Multiple sequence alignment - TraesCS4D01G321600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G321600 chr4D 100.000 8442 0 0 1 8442 484157045 484148604 0.000000e+00 15590.0
1 TraesCS4D01G321600 chr4D 97.549 204 5 0 7042 7245 421253346 421253143 4.850000e-92 350.0
2 TraesCS4D01G321600 chr4D 93.023 86 6 0 1584 1669 484155417 484155332 8.900000e-25 126.0
3 TraesCS4D01G321600 chr4D 93.023 86 6 0 1629 1714 484155462 484155377 8.900000e-25 126.0
4 TraesCS4D01G321600 chr4B 96.438 7018 170 32 776 7759 615563419 615556448 0.000000e+00 11502.0
5 TraesCS4D01G321600 chr4B 100.000 80 0 0 7833 7912 615556447 615556368 1.900000e-31 148.0
6 TraesCS4D01G321600 chr4B 95.349 86 4 0 1584 1669 615562568 615562483 4.110000e-28 137.0
7 TraesCS4D01G321600 chr4B 95.349 86 4 0 1629 1714 615562613 615562528 4.110000e-28 137.0
8 TraesCS4D01G321600 chr4B 94.000 50 3 0 8052 8101 615343229 615343180 9.090000e-10 76.8
9 TraesCS4D01G321600 chr4B 97.561 41 1 0 1674 1714 615562613 615562573 4.230000e-08 71.3
10 TraesCS4D01G321600 chr5A 95.212 6996 245 36 749 7705 664490191 664483247 0.000000e+00 10981.0
11 TraesCS4D01G321600 chr5A 95.287 679 31 1 1 679 438429497 438428820 0.000000e+00 1075.0
12 TraesCS4D01G321600 chr5A 98.246 342 6 0 8101 8442 688608333 688607992 4.360000e-167 599.0
13 TraesCS4D01G321600 chr5A 83.721 258 22 9 7860 8101 664483204 664482951 8.530000e-55 226.0
14 TraesCS4D01G321600 chr5A 94.444 90 3 2 7757 7844 670543088 670542999 4.110000e-28 137.0
15 TraesCS4D01G321600 chr5A 94.048 84 5 0 1586 1669 664489306 664489223 2.470000e-25 128.0
16 TraesCS4D01G321600 chr5A 94.340 53 3 0 8049 8101 664275424 664275372 1.950000e-11 82.4
17 TraesCS4D01G321600 chr7A 96.041 682 22 2 1 682 653541494 653542170 0.000000e+00 1105.0
18 TraesCS4D01G321600 chr7A 83.140 344 56 2 8100 8442 148921207 148921549 6.360000e-81 313.0
19 TraesCS4D01G321600 chr7A 84.000 125 17 3 1008 1131 725935993 725935871 5.350000e-22 117.0
20 TraesCS4D01G321600 chr6B 92.952 681 44 3 1 681 88880451 88879775 0.000000e+00 989.0
21 TraesCS4D01G321600 chr6B 84.097 698 73 19 1 698 611452918 611452259 2.570000e-179 640.0
22 TraesCS4D01G321600 chr6B 84.211 285 43 2 8159 8442 709583491 709583774 8.350000e-70 276.0
23 TraesCS4D01G321600 chr6B 71.529 713 143 50 1 682 562556906 562557589 4.110000e-28 137.0
24 TraesCS4D01G321600 chrUn 93.088 680 32 8 1 680 74719224 74719888 0.000000e+00 981.0
25 TraesCS4D01G321600 chr3D 99.441 537 2 1 7906 8442 571128108 571127573 0.000000e+00 974.0
26 TraesCS4D01G321600 chr3D 92.857 98 3 3 7757 7852 45429578 45429483 1.140000e-28 139.0
27 TraesCS4D01G321600 chr2B 89.747 673 48 9 1 673 765539220 765539871 0.000000e+00 841.0
28 TraesCS4D01G321600 chr2B 97.633 338 8 0 8105 8442 135780516 135780179 1.580000e-161 580.0
29 TraesCS4D01G321600 chr2B 97.647 85 1 1 7752 7835 288470711 288470795 2.460000e-30 145.0
30 TraesCS4D01G321600 chr2A 94.855 447 21 2 1 445 59335470 59335024 0.000000e+00 697.0
31 TraesCS4D01G321600 chr2A 95.305 213 7 3 472 683 59335027 59334817 1.360000e-87 335.0
32 TraesCS4D01G321600 chr2A 71.509 709 141 49 1 679 1216988 1217665 5.320000e-27 134.0
33 TraesCS4D01G321600 chr6A 85.714 259 34 3 8106 8363 611656798 611656542 3.880000e-68 270.0
34 TraesCS4D01G321600 chr3A 72.191 712 135 50 1 681 148614409 148615088 8.770000e-35 159.0
35 TraesCS4D01G321600 chr3A 87.288 118 6 5 7754 7864 516801724 516801839 8.900000e-25 126.0
36 TraesCS4D01G321600 chr5D 97.619 84 2 0 7756 7839 277244591 277244674 2.460000e-30 145.0
37 TraesCS4D01G321600 chr5D 95.402 87 3 1 7750 7836 43411030 43411115 4.110000e-28 137.0
38 TraesCS4D01G321600 chr5D 93.478 92 4 2 7746 7836 43411125 43411035 1.480000e-27 135.0
39 TraesCS4D01G321600 chr5D 90.722 97 3 1 7756 7846 331119030 331118934 3.200000e-24 124.0
40 TraesCS4D01G321600 chr3B 88.235 119 12 2 8140 8257 235888067 235888184 3.180000e-29 141.0
41 TraesCS4D01G321600 chr6D 88.679 106 8 3 7755 7857 461687857 461687753 8.900000e-25 126.0
42 TraesCS4D01G321600 chr7D 84.000 125 17 3 1008 1131 629838975 629838853 5.350000e-22 117.0
43 TraesCS4D01G321600 chr7B 83.594 128 16 4 1009 1132 732658450 732658324 1.930000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G321600 chr4D 484148604 484157045 8441 True 5280.666667 15590 95.348667 1 8442 3 chr4D.!!$R2 8441
1 TraesCS4D01G321600 chr4B 615556368 615563419 7051 True 2399.060000 11502 96.939400 776 7912 5 chr4B.!!$R2 7136
2 TraesCS4D01G321600 chr5A 664482951 664490191 7240 True 3778.333333 10981 90.993667 749 8101 3 chr5A.!!$R5 7352
3 TraesCS4D01G321600 chr5A 438428820 438429497 677 True 1075.000000 1075 95.287000 1 679 1 chr5A.!!$R1 678
4 TraesCS4D01G321600 chr7A 653541494 653542170 676 False 1105.000000 1105 96.041000 1 682 1 chr7A.!!$F2 681
5 TraesCS4D01G321600 chr6B 88879775 88880451 676 True 989.000000 989 92.952000 1 681 1 chr6B.!!$R1 680
6 TraesCS4D01G321600 chr6B 611452259 611452918 659 True 640.000000 640 84.097000 1 698 1 chr6B.!!$R2 697
7 TraesCS4D01G321600 chrUn 74719224 74719888 664 False 981.000000 981 93.088000 1 680 1 chrUn.!!$F1 679
8 TraesCS4D01G321600 chr3D 571127573 571128108 535 True 974.000000 974 99.441000 7906 8442 1 chr3D.!!$R2 536
9 TraesCS4D01G321600 chr2B 765539220 765539871 651 False 841.000000 841 89.747000 1 673 1 chr2B.!!$F2 672
10 TraesCS4D01G321600 chr2A 59334817 59335470 653 True 516.000000 697 95.080000 1 683 2 chr2A.!!$R1 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
842 875 0.318441 CTCACACACCATCTGGACGT 59.682 55.000 2.55 0.00 38.94 4.34 F
1662 1703 0.107456 CAGGGAAGCGGTATGATGCT 59.893 55.000 0.00 0.00 44.97 3.79 F
2995 3039 0.392193 ACGGCATGCTTTCTCTGAGG 60.392 55.000 18.92 0.00 0.00 3.86 F
3103 3147 2.059541 GAGACACTGTTACGAGCAACC 58.940 52.381 0.00 0.00 0.00 3.77 F
3184 3228 2.574006 TTGGCTGCAAGATCTCAGTT 57.426 45.000 11.82 0.00 34.07 3.16 F
5024 5092 0.827368 ACCTTTCTTTTTGCGGGCAA 59.173 45.000 1.21 1.21 0.00 4.52 F
5603 5673 3.201487 TCATCTCATGCAGACCATTTCCT 59.799 43.478 0.00 0.00 32.26 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2328 2369 0.379669 GCTTGATGAGTTGGGCATCG 59.620 55.000 0.00 0.00 43.88 3.84 R
3103 3147 0.674895 AAGCTGTAGAAGGCAAGCCG 60.675 55.000 5.28 0.00 41.95 5.52 R
3964 4025 1.000019 CCTCCCTCCCTACGTGACA 60.000 63.158 0.00 0.00 0.00 3.58 R
3970 4031 3.116668 AGAAGTAATCCCTCCCTCCCTAC 60.117 52.174 0.00 0.00 0.00 3.18 R
5056 5126 5.243207 ACGGTTTGGTGTTATTTAGAGAGG 58.757 41.667 0.00 0.00 0.00 3.69 R
6146 6220 0.392193 ATTCACTCTCAGGCGCTTGG 60.392 55.000 20.24 10.46 0.00 3.61 R
7460 7543 1.339055 CCCGCAAGAGACAAATCCTCA 60.339 52.381 0.00 0.00 43.02 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 165 5.588246 TGTTTTCACTGTGTGCTCTTTCATA 59.412 36.000 7.79 0.00 32.98 2.15
191 194 3.593442 TGGTCAGGTTTGATGAAAGGT 57.407 42.857 0.00 0.00 35.39 3.50
270 273 5.534278 TCTCTTGCTGATCGATCTACTTCAT 59.466 40.000 25.02 0.00 0.00 2.57
309 312 0.884514 GCAGGGGAGCTGAAAAAGTC 59.115 55.000 0.00 0.00 0.00 3.01
460 492 6.267496 ACTATTTTGGTGCTTGATGGTTAC 57.733 37.500 0.00 0.00 0.00 2.50
546 578 1.448013 GTGCTCCAACTCGCTACCC 60.448 63.158 0.00 0.00 0.00 3.69
696 729 3.608316 AAAAAGCTGTGGCAAACTTGA 57.392 38.095 0.00 0.00 41.70 3.02
697 730 3.825143 AAAAGCTGTGGCAAACTTGAT 57.175 38.095 0.00 0.00 41.70 2.57
698 731 3.825143 AAAGCTGTGGCAAACTTGATT 57.175 38.095 0.00 0.00 41.70 2.57
699 732 4.935352 AAAGCTGTGGCAAACTTGATTA 57.065 36.364 0.00 0.00 41.70 1.75
700 733 4.510038 AAGCTGTGGCAAACTTGATTAG 57.490 40.909 0.00 0.00 41.70 1.73
701 734 3.754965 AGCTGTGGCAAACTTGATTAGA 58.245 40.909 0.00 0.00 41.70 2.10
702 735 3.755378 AGCTGTGGCAAACTTGATTAGAG 59.245 43.478 0.00 0.00 41.70 2.43
703 736 3.671702 GCTGTGGCAAACTTGATTAGAGC 60.672 47.826 0.00 0.00 38.54 4.09
704 737 2.819608 TGTGGCAAACTTGATTAGAGCC 59.180 45.455 0.00 0.00 38.99 4.70
705 738 3.084786 GTGGCAAACTTGATTAGAGCCT 58.915 45.455 0.00 0.00 39.15 4.58
706 739 3.507622 GTGGCAAACTTGATTAGAGCCTT 59.492 43.478 0.00 0.00 39.15 4.35
707 740 3.758554 TGGCAAACTTGATTAGAGCCTTC 59.241 43.478 0.00 0.00 39.15 3.46
708 741 4.013050 GGCAAACTTGATTAGAGCCTTCT 58.987 43.478 0.00 0.00 37.09 2.85
709 742 4.095632 GGCAAACTTGATTAGAGCCTTCTC 59.904 45.833 0.00 0.00 37.09 2.87
710 743 4.201763 GCAAACTTGATTAGAGCCTTCTCG 60.202 45.833 0.00 0.00 44.02 4.04
711 744 4.810191 AACTTGATTAGAGCCTTCTCGT 57.190 40.909 0.00 0.00 44.02 4.18
712 745 4.810191 ACTTGATTAGAGCCTTCTCGTT 57.190 40.909 0.00 0.00 44.02 3.85
713 746 4.749976 ACTTGATTAGAGCCTTCTCGTTC 58.250 43.478 0.00 0.00 44.02 3.95
714 747 4.220821 ACTTGATTAGAGCCTTCTCGTTCA 59.779 41.667 0.00 0.00 44.02 3.18
715 748 4.377839 TGATTAGAGCCTTCTCGTTCAG 57.622 45.455 0.00 0.00 44.02 3.02
716 749 3.764434 TGATTAGAGCCTTCTCGTTCAGT 59.236 43.478 0.00 0.00 44.02 3.41
717 750 3.577649 TTAGAGCCTTCTCGTTCAGTG 57.422 47.619 0.00 0.00 44.02 3.66
718 751 1.621992 AGAGCCTTCTCGTTCAGTGA 58.378 50.000 0.00 0.00 44.02 3.41
719 752 1.964223 AGAGCCTTCTCGTTCAGTGAA 59.036 47.619 0.08 0.08 44.02 3.18
720 753 2.564947 AGAGCCTTCTCGTTCAGTGAAT 59.435 45.455 9.18 0.00 44.02 2.57
721 754 2.926838 GAGCCTTCTCGTTCAGTGAATC 59.073 50.000 9.18 2.36 32.66 2.52
722 755 2.300152 AGCCTTCTCGTTCAGTGAATCA 59.700 45.455 9.18 0.00 32.66 2.57
723 756 2.413453 GCCTTCTCGTTCAGTGAATCAC 59.587 50.000 9.18 5.02 32.66 3.06
724 757 2.663602 CCTTCTCGTTCAGTGAATCACG 59.336 50.000 9.18 9.15 39.64 4.35
725 758 3.309388 CTTCTCGTTCAGTGAATCACGT 58.691 45.455 9.18 0.00 39.64 4.49
726 759 2.661594 TCTCGTTCAGTGAATCACGTG 58.338 47.619 9.94 9.94 39.64 4.49
727 760 1.125021 CTCGTTCAGTGAATCACGTGC 59.875 52.381 11.67 0.00 39.64 5.34
728 761 0.858583 CGTTCAGTGAATCACGTGCA 59.141 50.000 11.67 0.00 39.64 4.57
729 762 1.397190 CGTTCAGTGAATCACGTGCAC 60.397 52.381 11.67 13.47 39.64 4.57
730 763 1.867233 GTTCAGTGAATCACGTGCACT 59.133 47.619 18.07 18.07 43.16 4.40
731 764 2.238942 TCAGTGAATCACGTGCACTT 57.761 45.000 20.34 1.59 40.63 3.16
732 765 2.135139 TCAGTGAATCACGTGCACTTC 58.865 47.619 20.34 17.27 40.63 3.01
733 766 2.138320 CAGTGAATCACGTGCACTTCT 58.862 47.619 20.34 9.71 40.63 2.85
734 767 2.156504 CAGTGAATCACGTGCACTTCTC 59.843 50.000 20.34 16.94 40.63 2.87
735 768 1.461127 GTGAATCACGTGCACTTCTCC 59.539 52.381 16.19 3.63 0.00 3.71
736 769 1.344438 TGAATCACGTGCACTTCTCCT 59.656 47.619 16.19 0.00 0.00 3.69
737 770 1.996191 GAATCACGTGCACTTCTCCTC 59.004 52.381 16.19 0.76 0.00 3.71
738 771 1.261480 ATCACGTGCACTTCTCCTCT 58.739 50.000 16.19 0.00 0.00 3.69
739 772 1.905637 TCACGTGCACTTCTCCTCTA 58.094 50.000 16.19 0.00 0.00 2.43
740 773 2.447443 TCACGTGCACTTCTCCTCTAT 58.553 47.619 16.19 0.00 0.00 1.98
741 774 2.164422 TCACGTGCACTTCTCCTCTATG 59.836 50.000 16.19 0.00 0.00 2.23
742 775 1.478510 ACGTGCACTTCTCCTCTATGG 59.521 52.381 16.19 0.00 37.10 2.74
743 776 1.478510 CGTGCACTTCTCCTCTATGGT 59.521 52.381 16.19 0.00 37.07 3.55
744 777 2.093973 CGTGCACTTCTCCTCTATGGTT 60.094 50.000 16.19 0.00 37.07 3.67
745 778 3.526534 GTGCACTTCTCCTCTATGGTTC 58.473 50.000 10.32 0.00 37.07 3.62
746 779 2.166459 TGCACTTCTCCTCTATGGTTCG 59.834 50.000 0.00 0.00 37.07 3.95
747 780 2.482142 GCACTTCTCCTCTATGGTTCGG 60.482 54.545 0.00 0.00 37.07 4.30
770 803 7.720515 TCGGAAAAATAAACTTGGTTAGAAGGA 59.279 33.333 0.00 0.00 0.00 3.36
771 804 7.806487 CGGAAAAATAAACTTGGTTAGAAGGAC 59.194 37.037 0.00 0.00 0.00 3.85
782 815 4.410883 TGGTTAGAAGGACTTGAAACTGGA 59.589 41.667 0.00 0.00 0.00 3.86
783 816 4.998033 GGTTAGAAGGACTTGAAACTGGAG 59.002 45.833 0.00 0.00 0.00 3.86
842 875 0.318441 CTCACACACCATCTGGACGT 59.682 55.000 2.55 0.00 38.94 4.34
1171 1212 1.309688 CCAATCCATTCCCCCGGTT 59.690 57.895 0.00 0.00 0.00 4.44
1188 1229 4.865761 TCGAGCGCCCCGAATTCG 62.866 66.667 20.92 20.92 39.44 3.34
1241 1282 0.755686 AGCCCCTCTCTAGCGAATTG 59.244 55.000 0.00 0.00 0.00 2.32
1276 1317 0.396556 AGGGTTGGTTGGTTGGTGAC 60.397 55.000 0.00 0.00 0.00 3.67
1468 1509 2.187946 CCGCCTCCGAAGATTGCT 59.812 61.111 0.00 0.00 36.29 3.91
1579 1620 2.974698 CCGCAGATGAATCCGGCC 60.975 66.667 0.00 0.00 33.77 6.13
1662 1703 0.107456 CAGGGAAGCGGTATGATGCT 59.893 55.000 0.00 0.00 44.97 3.79
1789 1830 2.301505 CGTCAACTCGATGATGCCC 58.698 57.895 0.00 0.00 31.67 5.36
2038 2079 3.580895 GGGGTAATGTTGGTTCATTTGGT 59.419 43.478 0.00 0.00 38.68 3.67
2328 2369 2.280797 TGCACTTCCGACCAGCAC 60.281 61.111 0.00 0.00 0.00 4.40
2362 2403 3.153369 TCAAGCTTTATGTCCAAGCCA 57.847 42.857 0.00 0.00 46.76 4.75
2501 2542 1.067295 ATCTCCAGGTGTTTCTGCCA 58.933 50.000 0.00 0.00 33.64 4.92
2521 2562 3.127030 CCAGCGTTTCTAATTCCACTTCC 59.873 47.826 0.00 0.00 0.00 3.46
2629 2670 1.137614 CGCAGAAGCTCGCACTCTA 59.862 57.895 0.00 0.00 39.10 2.43
2995 3039 0.392193 ACGGCATGCTTTCTCTGAGG 60.392 55.000 18.92 0.00 0.00 3.86
3019 3063 6.128472 GGGAGTTTTGCATTGCTCTTTATTTG 60.128 38.462 10.49 0.00 0.00 2.32
3032 3076 5.882557 GCTCTTTATTTGATGGAGAGGAACA 59.117 40.000 0.00 0.00 35.53 3.18
3103 3147 2.059541 GAGACACTGTTACGAGCAACC 58.940 52.381 0.00 0.00 0.00 3.77
3127 3171 3.120165 GCTTGCCTTCTACAGCTTACAAC 60.120 47.826 0.00 0.00 0.00 3.32
3180 3224 4.970662 TTTGTATTGGCTGCAAGATCTC 57.029 40.909 0.50 0.00 34.07 2.75
3181 3225 3.632643 TGTATTGGCTGCAAGATCTCA 57.367 42.857 0.50 0.00 34.07 3.27
3182 3226 3.538591 TGTATTGGCTGCAAGATCTCAG 58.461 45.455 0.50 7.00 34.07 3.35
3183 3227 2.803030 ATTGGCTGCAAGATCTCAGT 57.197 45.000 11.82 0.00 34.07 3.41
3184 3228 2.574006 TTGGCTGCAAGATCTCAGTT 57.426 45.000 11.82 0.00 34.07 3.16
3185 3229 3.701205 TTGGCTGCAAGATCTCAGTTA 57.299 42.857 11.82 1.13 34.07 2.24
3186 3230 3.920231 TGGCTGCAAGATCTCAGTTAT 57.080 42.857 11.82 0.00 34.07 1.89
3632 3676 7.885297 TGCTCTTGTTATTCAATTAAGCAAGT 58.115 30.769 0.00 0.00 40.03 3.16
3633 3677 8.023128 TGCTCTTGTTATTCAATTAAGCAAGTC 58.977 33.333 0.00 0.00 40.03 3.01
3667 3711 3.438781 GGTGTATCCAAATCTTGTCGCAA 59.561 43.478 0.00 0.00 35.97 4.85
3964 4025 8.691661 TCTTTGTAAGCAACCTTCTCTAAAAT 57.308 30.769 0.00 0.00 33.82 1.82
3970 4031 4.452455 AGCAACCTTCTCTAAAATGTCACG 59.548 41.667 0.00 0.00 0.00 4.35
4311 4374 8.034058 AGCATGTTTCTATCTTGTTAGTTGTC 57.966 34.615 0.00 0.00 0.00 3.18
4646 4712 1.729284 CAGGCATGGAAATTGGTTGC 58.271 50.000 0.00 0.00 0.00 4.17
4898 4966 6.980978 TCATATCTTCATTCCGACTGTCTTTC 59.019 38.462 6.21 0.00 0.00 2.62
5024 5092 0.827368 ACCTTTCTTTTTGCGGGCAA 59.173 45.000 1.21 1.21 0.00 4.52
5056 5126 9.994432 CATACCTTCAATCAGTTCTATTTTGTC 57.006 33.333 0.00 0.00 0.00 3.18
5223 5293 3.302161 GGTACCCAACTTTCCCAACTTT 58.698 45.455 0.00 0.00 0.00 2.66
5235 5305 8.528044 ACTTTCCCAACTTTCAGTATTTGTTA 57.472 30.769 0.00 0.00 0.00 2.41
5429 5499 5.340803 TGAAGGTCAGATACTTTTCGATCG 58.659 41.667 9.36 9.36 0.00 3.69
5541 5611 5.514274 AAAGTGCTGATTTCCTTTCGAAA 57.486 34.783 10.71 10.71 44.49 3.46
5603 5673 3.201487 TCATCTCATGCAGACCATTTCCT 59.799 43.478 0.00 0.00 32.26 3.36
5607 5677 3.952323 CTCATGCAGACCATTTCCTGATT 59.048 43.478 0.00 0.00 32.37 2.57
5636 5707 5.643777 ACTTCATGCTTACACCAGTTATGTC 59.356 40.000 0.00 0.00 0.00 3.06
5638 5709 6.538945 TCATGCTTACACCAGTTATGTCTA 57.461 37.500 0.00 0.00 0.00 2.59
5681 5755 6.773976 TGATTGTGTTTCTAATCCCAATCC 57.226 37.500 0.00 0.00 38.11 3.01
5708 5782 7.621832 TTCGCTGTTGTCAAATAATTTTCAG 57.378 32.000 0.00 0.00 0.00 3.02
5925 5999 3.678056 TCGACATCAGCAACCTACTTT 57.322 42.857 0.00 0.00 0.00 2.66
6146 6220 3.056536 TGAGACATTACAGAGCTGGTGAC 60.057 47.826 0.00 0.00 34.19 3.67
6407 6487 7.281841 TGAACAACATGATGAGCTATATTCCA 58.718 34.615 10.29 0.00 0.00 3.53
6430 6510 7.818930 TCCATTTCTTTATTTGCTTGATGAACC 59.181 33.333 0.00 0.00 0.00 3.62
6490 6571 5.163301 CCTGCCTTTAGAAGTATGAGCCTTA 60.163 44.000 0.00 0.00 0.00 2.69
6549 6630 4.589908 AGCTGACCAAGATTTATCGGTTT 58.410 39.130 0.00 0.00 0.00 3.27
6733 6816 7.573968 ATCCTCCAAGAAATATTGCAAGTAC 57.426 36.000 4.94 0.00 0.00 2.73
6908 6991 6.092807 GGAACTTTGATGACCAAGATACTGAC 59.907 42.308 0.00 0.00 35.94 3.51
6975 7058 1.948104 TCTGGACTTTTGTGGTGTCG 58.052 50.000 0.00 0.00 0.00 4.35
6984 7067 0.034756 TTGTGGTGTCGACCCATCTG 59.965 55.000 23.09 0.00 42.34 2.90
7228 7311 5.727434 TCCTATAACTTTGGAAGGTTCGAC 58.273 41.667 0.00 0.00 0.00 4.20
7282 7365 0.673985 AAAGCCGCTTTTCCAGGTTC 59.326 50.000 12.75 0.00 28.27 3.62
7426 7509 4.819761 GCATCAGGAGCGCGGTCA 62.820 66.667 35.80 19.10 0.00 4.02
7538 7622 4.481368 AAGTACAATACAGCGGATCCAA 57.519 40.909 13.41 0.00 0.00 3.53
7760 7853 9.485591 CAATATACAAACGTCAAATTGGTACTC 57.514 33.333 3.01 0.00 0.00 2.59
7761 7854 4.823790 ACAAACGTCAAATTGGTACTCC 57.176 40.909 3.01 0.00 0.00 3.85
7762 7855 3.566742 ACAAACGTCAAATTGGTACTCCC 59.433 43.478 3.01 0.00 0.00 4.30
7763 7856 3.782656 AACGTCAAATTGGTACTCCCT 57.217 42.857 0.00 0.00 0.00 4.20
7764 7857 3.329929 ACGTCAAATTGGTACTCCCTC 57.670 47.619 0.00 0.00 0.00 4.30
7765 7858 2.904434 ACGTCAAATTGGTACTCCCTCT 59.096 45.455 0.00 0.00 0.00 3.69
7766 7859 3.262420 CGTCAAATTGGTACTCCCTCTG 58.738 50.000 0.00 0.00 0.00 3.35
7767 7860 3.306780 CGTCAAATTGGTACTCCCTCTGT 60.307 47.826 0.00 0.00 0.00 3.41
7768 7861 4.081862 CGTCAAATTGGTACTCCCTCTGTA 60.082 45.833 0.00 0.00 0.00 2.74
7769 7862 5.568023 CGTCAAATTGGTACTCCCTCTGTAA 60.568 44.000 0.00 0.00 0.00 2.41
7770 7863 6.235664 GTCAAATTGGTACTCCCTCTGTAAA 58.764 40.000 0.00 0.00 0.00 2.01
7771 7864 6.148976 GTCAAATTGGTACTCCCTCTGTAAAC 59.851 42.308 0.00 0.00 0.00 2.01
7772 7865 6.043938 TCAAATTGGTACTCCCTCTGTAAACT 59.956 38.462 0.00 0.00 0.00 2.66
7773 7866 7.236019 TCAAATTGGTACTCCCTCTGTAAACTA 59.764 37.037 0.00 0.00 0.00 2.24
7774 7867 7.563724 AATTGGTACTCCCTCTGTAAACTAA 57.436 36.000 0.00 0.00 0.00 2.24
7775 7868 7.750947 ATTGGTACTCCCTCTGTAAACTAAT 57.249 36.000 0.00 0.00 0.00 1.73
7776 7869 8.849543 ATTGGTACTCCCTCTGTAAACTAATA 57.150 34.615 0.00 0.00 0.00 0.98
7777 7870 8.849543 TTGGTACTCCCTCTGTAAACTAATAT 57.150 34.615 0.00 0.00 0.00 1.28
7778 7871 9.940974 TTGGTACTCCCTCTGTAAACTAATATA 57.059 33.333 0.00 0.00 0.00 0.86
7779 7872 9.940974 TGGTACTCCCTCTGTAAACTAATATAA 57.059 33.333 0.00 0.00 0.00 0.98
7783 7876 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
7784 7877 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
7785 7878 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
7786 7879 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
7787 7880 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
7829 7922 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
7830 7923 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
7831 7924 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
8104 8213 1.000731 GCTATGCTGCCGATCTCTCTT 59.999 52.381 0.00 0.00 0.00 2.85
8315 8424 2.746279 AACACCACTGAATCCCACAA 57.254 45.000 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 165 7.309990 CCTTTCATCAAACCTGACCAATACATT 60.310 37.037 0.00 0.00 33.30 2.71
191 194 2.789213 TGGAATTTCGCCTTGTCATCA 58.211 42.857 0.00 0.00 0.00 3.07
309 312 2.669300 AGCACACACATCTAGCTCAG 57.331 50.000 0.00 0.00 0.00 3.35
460 492 1.576421 GGCGAAAACCTGCTGACAG 59.424 57.895 0.00 0.00 44.05 3.51
546 578 0.610232 CAACAGGAGGCAGAAAGGGG 60.610 60.000 0.00 0.00 0.00 4.79
682 715 3.119708 GGCTCTAATCAAGTTTGCCACAG 60.120 47.826 0.00 0.00 37.23 3.66
683 716 2.819608 GGCTCTAATCAAGTTTGCCACA 59.180 45.455 0.00 0.00 37.23 4.17
684 717 3.084786 AGGCTCTAATCAAGTTTGCCAC 58.915 45.455 0.00 0.00 38.59 5.01
685 718 3.439857 AGGCTCTAATCAAGTTTGCCA 57.560 42.857 0.00 0.00 38.59 4.92
686 719 4.013050 AGAAGGCTCTAATCAAGTTTGCC 58.987 43.478 0.00 0.00 37.40 4.52
687 720 4.201763 CGAGAAGGCTCTAATCAAGTTTGC 60.202 45.833 0.00 0.00 39.06 3.68
688 721 4.932200 ACGAGAAGGCTCTAATCAAGTTTG 59.068 41.667 0.00 0.00 39.06 2.93
689 722 5.153950 ACGAGAAGGCTCTAATCAAGTTT 57.846 39.130 0.00 0.00 39.06 2.66
690 723 4.810191 ACGAGAAGGCTCTAATCAAGTT 57.190 40.909 0.00 0.00 39.06 2.66
691 724 4.220821 TGAACGAGAAGGCTCTAATCAAGT 59.779 41.667 0.00 0.00 39.06 3.16
692 725 4.748892 TGAACGAGAAGGCTCTAATCAAG 58.251 43.478 0.00 0.00 39.06 3.02
693 726 4.220821 ACTGAACGAGAAGGCTCTAATCAA 59.779 41.667 0.00 0.00 39.06 2.57
694 727 3.764434 ACTGAACGAGAAGGCTCTAATCA 59.236 43.478 0.00 0.00 39.06 2.57
695 728 4.109050 CACTGAACGAGAAGGCTCTAATC 58.891 47.826 0.00 0.00 39.06 1.75
696 729 3.764434 TCACTGAACGAGAAGGCTCTAAT 59.236 43.478 0.00 0.00 39.06 1.73
697 730 3.154710 TCACTGAACGAGAAGGCTCTAA 58.845 45.455 0.00 0.00 39.06 2.10
698 731 2.791655 TCACTGAACGAGAAGGCTCTA 58.208 47.619 0.00 0.00 39.06 2.43
699 732 1.621992 TCACTGAACGAGAAGGCTCT 58.378 50.000 0.00 0.00 39.06 4.09
700 733 2.440539 TTCACTGAACGAGAAGGCTC 57.559 50.000 0.00 0.00 37.81 4.70
701 734 2.300152 TGATTCACTGAACGAGAAGGCT 59.700 45.455 0.00 0.00 0.00 4.58
702 735 2.413453 GTGATTCACTGAACGAGAAGGC 59.587 50.000 9.59 0.00 0.00 4.35
703 736 2.663602 CGTGATTCACTGAACGAGAAGG 59.336 50.000 14.54 0.00 38.27 3.46
704 737 3.120286 CACGTGATTCACTGAACGAGAAG 59.880 47.826 10.90 0.00 39.27 2.85
705 738 3.049912 CACGTGATTCACTGAACGAGAA 58.950 45.455 10.90 0.00 39.27 2.87
706 739 2.661594 CACGTGATTCACTGAACGAGA 58.338 47.619 10.90 0.00 39.27 4.04
707 740 1.125021 GCACGTGATTCACTGAACGAG 59.875 52.381 22.23 2.67 39.27 4.18
708 741 1.136690 GCACGTGATTCACTGAACGA 58.863 50.000 22.23 0.00 39.27 3.85
709 742 0.858583 TGCACGTGATTCACTGAACG 59.141 50.000 22.23 3.88 41.64 3.95
710 743 1.867233 AGTGCACGTGATTCACTGAAC 59.133 47.619 22.23 14.58 39.36 3.18
711 744 2.238942 AGTGCACGTGATTCACTGAA 57.761 45.000 22.23 4.40 39.36 3.02
712 745 2.135139 GAAGTGCACGTGATTCACTGA 58.865 47.619 22.23 1.50 40.54 3.41
713 746 2.138320 AGAAGTGCACGTGATTCACTG 58.862 47.619 22.23 12.05 40.54 3.66
714 747 2.408050 GAGAAGTGCACGTGATTCACT 58.592 47.619 22.23 19.71 42.28 3.41
715 748 1.461127 GGAGAAGTGCACGTGATTCAC 59.539 52.381 22.23 17.67 0.00 3.18
716 749 1.344438 AGGAGAAGTGCACGTGATTCA 59.656 47.619 22.23 4.77 0.00 2.57
717 750 1.996191 GAGGAGAAGTGCACGTGATTC 59.004 52.381 22.23 18.52 0.00 2.52
718 751 1.620819 AGAGGAGAAGTGCACGTGATT 59.379 47.619 22.23 10.38 0.00 2.57
719 752 1.261480 AGAGGAGAAGTGCACGTGAT 58.739 50.000 22.23 0.30 0.00 3.06
720 753 1.905637 TAGAGGAGAAGTGCACGTGA 58.094 50.000 22.23 1.04 0.00 4.35
721 754 2.534298 CATAGAGGAGAAGTGCACGTG 58.466 52.381 10.87 12.28 0.00 4.49
722 755 1.478510 CCATAGAGGAGAAGTGCACGT 59.521 52.381 12.01 8.44 41.22 4.49
723 756 1.478510 ACCATAGAGGAGAAGTGCACG 59.521 52.381 12.01 0.00 41.22 5.34
724 757 3.526534 GAACCATAGAGGAGAAGTGCAC 58.473 50.000 9.40 9.40 41.22 4.57
725 758 2.166459 CGAACCATAGAGGAGAAGTGCA 59.834 50.000 0.00 0.00 41.22 4.57
726 759 2.482142 CCGAACCATAGAGGAGAAGTGC 60.482 54.545 0.00 0.00 41.22 4.40
727 760 3.024547 TCCGAACCATAGAGGAGAAGTG 58.975 50.000 0.00 0.00 41.22 3.16
728 761 3.383698 TCCGAACCATAGAGGAGAAGT 57.616 47.619 0.00 0.00 41.22 3.01
729 762 4.737855 TTTCCGAACCATAGAGGAGAAG 57.262 45.455 0.00 0.00 41.22 2.85
730 763 5.492855 TTTTTCCGAACCATAGAGGAGAA 57.507 39.130 0.00 0.00 41.22 2.87
731 764 5.693769 ATTTTTCCGAACCATAGAGGAGA 57.306 39.130 0.00 0.00 41.22 3.71
732 765 7.553044 AGTTTATTTTTCCGAACCATAGAGGAG 59.447 37.037 0.00 0.00 41.22 3.69
733 766 7.399634 AGTTTATTTTTCCGAACCATAGAGGA 58.600 34.615 0.00 0.00 41.22 3.71
734 767 7.625828 AGTTTATTTTTCCGAACCATAGAGG 57.374 36.000 0.00 0.00 45.67 3.69
735 768 7.968405 CCAAGTTTATTTTTCCGAACCATAGAG 59.032 37.037 0.00 0.00 0.00 2.43
736 769 7.449086 ACCAAGTTTATTTTTCCGAACCATAGA 59.551 33.333 0.00 0.00 0.00 1.98
737 770 7.599171 ACCAAGTTTATTTTTCCGAACCATAG 58.401 34.615 0.00 0.00 0.00 2.23
738 771 7.527568 ACCAAGTTTATTTTTCCGAACCATA 57.472 32.000 0.00 0.00 0.00 2.74
739 772 6.413783 ACCAAGTTTATTTTTCCGAACCAT 57.586 33.333 0.00 0.00 0.00 3.55
740 773 5.855740 ACCAAGTTTATTTTTCCGAACCA 57.144 34.783 0.00 0.00 0.00 3.67
741 774 7.650890 TCTAACCAAGTTTATTTTTCCGAACC 58.349 34.615 0.00 0.00 0.00 3.62
742 775 9.177304 CTTCTAACCAAGTTTATTTTTCCGAAC 57.823 33.333 0.00 0.00 0.00 3.95
743 776 8.354426 CCTTCTAACCAAGTTTATTTTTCCGAA 58.646 33.333 0.00 0.00 0.00 4.30
744 777 7.720515 TCCTTCTAACCAAGTTTATTTTTCCGA 59.279 33.333 0.00 0.00 0.00 4.55
745 778 7.806487 GTCCTTCTAACCAAGTTTATTTTTCCG 59.194 37.037 0.00 0.00 0.00 4.30
746 779 8.857098 AGTCCTTCTAACCAAGTTTATTTTTCC 58.143 33.333 0.00 0.00 0.00 3.13
812 845 3.054503 GTGTGAGCTGCCTGCCTG 61.055 66.667 0.00 0.00 44.23 4.85
813 846 3.563224 TGTGTGAGCTGCCTGCCT 61.563 61.111 0.00 0.00 44.23 4.75
814 847 3.360340 GTGTGTGAGCTGCCTGCC 61.360 66.667 0.00 0.00 44.23 4.85
1171 1212 4.865761 CGAATTCGGGGCGCTCGA 62.866 66.667 20.16 18.93 35.37 4.04
1182 1223 1.270571 GGGAGATCAGGCCTCGAATTC 60.271 57.143 0.00 6.54 0.00 2.17
1188 1229 1.923356 CTCTAGGGAGATCAGGCCTC 58.077 60.000 0.00 0.00 41.86 4.70
1192 1233 0.968405 GCTGCTCTAGGGAGATCAGG 59.032 60.000 0.00 0.00 43.36 3.86
1193 1234 0.597568 CGCTGCTCTAGGGAGATCAG 59.402 60.000 0.00 2.21 45.11 2.90
1241 1282 3.477210 ACCCTTAGCTTCCATCGAATC 57.523 47.619 0.00 0.00 0.00 2.52
1276 1317 4.072088 GCGCACAAGGTCCGAACG 62.072 66.667 0.30 0.00 0.00 3.95
1504 1545 0.478507 CATTACCTTGGGGCCTAGGG 59.521 60.000 16.91 16.91 41.99 3.53
1562 1603 2.974698 GGCCGGATTCATCTGCGG 60.975 66.667 5.05 0.00 35.57 5.69
1662 1703 1.004080 GGAGCAGCAGCAGAAGTCA 60.004 57.895 3.17 0.00 45.49 3.41
1789 1830 3.052082 CCACCCTGACTTGCAGCG 61.052 66.667 0.00 0.00 43.50 5.18
1936 1977 2.046313 GTTGCTTGAAGTGATGTTGCG 58.954 47.619 0.00 0.00 0.00 4.85
2038 2079 2.225522 TGGAGAGGGTTGTGAGATACCA 60.226 50.000 0.00 0.00 36.10 3.25
2328 2369 0.379669 GCTTGATGAGTTGGGCATCG 59.620 55.000 0.00 0.00 43.88 3.84
2501 2542 3.244770 TGGGAAGTGGAATTAGAAACGCT 60.245 43.478 0.00 0.00 0.00 5.07
2521 2562 4.599047 TTGAGTAACTTTTGGCCATTGG 57.401 40.909 6.09 1.51 0.00 3.16
2698 2739 6.639671 GAGCATCTTATAGGCAGAAATACG 57.360 41.667 0.00 0.00 37.35 3.06
2995 3039 6.646240 TCAAATAAAGAGCAATGCAAAACTCC 59.354 34.615 8.35 0.00 0.00 3.85
3019 3063 1.138661 CCAGCTCTGTTCCTCTCCATC 59.861 57.143 0.00 0.00 0.00 3.51
3032 3076 1.264045 GGCAGAGGAGTTCCAGCTCT 61.264 60.000 0.28 0.00 38.89 4.09
3103 3147 0.674895 AAGCTGTAGAAGGCAAGCCG 60.675 55.000 5.28 0.00 41.95 5.52
3220 3264 3.435671 GCTAGACAAAGTATGCGTGGTTT 59.564 43.478 0.00 0.00 0.00 3.27
3352 3396 3.538591 TCCATCAGTCTGTGAATGCATC 58.461 45.455 0.00 0.00 39.19 3.91
3632 3676 4.030216 TGGATACACCATTCAGCTGTAGA 58.970 43.478 14.67 1.43 46.17 2.59
3633 3677 4.406648 TGGATACACCATTCAGCTGTAG 57.593 45.455 14.67 4.75 46.17 2.74
3667 3711 7.725251 ACAACTGGTCAATGTTAAATCATGTT 58.275 30.769 0.00 0.00 0.00 2.71
3791 3835 8.242729 TGGCAGTATGATATATACAGGAGATG 57.757 38.462 0.00 0.00 39.69 2.90
3964 4025 1.000019 CCTCCCTCCCTACGTGACA 60.000 63.158 0.00 0.00 0.00 3.58
3970 4031 3.116668 AGAAGTAATCCCTCCCTCCCTAC 60.117 52.174 0.00 0.00 0.00 3.18
4898 4966 9.686683 TTCCTCTCCTGAAAAAGATTATTAAGG 57.313 33.333 0.00 0.00 0.00 2.69
5056 5126 5.243207 ACGGTTTGGTGTTATTTAGAGAGG 58.757 41.667 0.00 0.00 0.00 3.69
5108 5178 5.480642 TCTCCATCTCCTCTAATTGATGC 57.519 43.478 0.00 0.00 36.08 3.91
5429 5499 7.717568 TCTAAGTAGTGATGTAAGGCAAGATC 58.282 38.462 0.00 0.00 0.00 2.75
5541 5611 8.602472 TGCCCTATAAACAGAAAATTACCAAT 57.398 30.769 0.00 0.00 0.00 3.16
5603 5673 4.937620 GTGTAAGCATGAAGTCCAGAATCA 59.062 41.667 0.00 0.00 0.00 2.57
5607 5677 2.637382 TGGTGTAAGCATGAAGTCCAGA 59.363 45.455 0.00 0.00 40.88 3.86
5655 5729 7.959658 ATTGGGATTAGAAACACAATCATGA 57.040 32.000 0.00 0.00 35.59 3.07
5665 5739 5.067805 AGCGAAATGGATTGGGATTAGAAAC 59.932 40.000 0.00 0.00 0.00 2.78
5681 5755 8.486383 TGAAAATTATTTGACAACAGCGAAATG 58.514 29.630 0.00 0.00 0.00 2.32
5753 5827 3.945285 AGCGGACGGAAAATAATGACAAT 59.055 39.130 0.00 0.00 0.00 2.71
5925 5999 6.855763 AATAAGATCAGCCAAAAATGGACA 57.144 33.333 0.00 0.00 0.00 4.02
6146 6220 0.392193 ATTCACTCTCAGGCGCTTGG 60.392 55.000 20.24 10.46 0.00 3.61
6323 6398 9.855021 TTTTAAACTTTGAGAAAAAGGACTCTG 57.145 29.630 3.15 0.00 34.65 3.35
6490 6571 1.341976 ACAGTGGGGTTTGCTCAAAGT 60.342 47.619 0.00 0.00 0.00 2.66
6549 6630 7.537596 ACATCCAAAACATTCAGGTGATAAA 57.462 32.000 0.00 0.00 0.00 1.40
6658 6741 5.904362 AAGTAGGAAACAAGGATGATTGC 57.096 39.130 0.00 0.00 33.28 3.56
6908 6991 3.889815 TGCATTAGATCCCCAAACTGAG 58.110 45.455 0.00 0.00 0.00 3.35
6975 7058 7.718753 AGATAATTCATCAGAAACAGATGGGTC 59.281 37.037 0.00 0.00 42.38 4.46
7228 7311 2.419851 GCTGTCTTGGGATCTGAAGGAG 60.420 54.545 0.00 0.00 0.00 3.69
7460 7543 1.339055 CCCGCAAGAGACAAATCCTCA 60.339 52.381 0.00 0.00 43.02 3.86
7760 7853 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
7761 7854 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
7803 7896 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
7804 7897 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
7805 7898 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
7806 7899 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
7807 7900 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
7814 7907 9.844257 GTCTAGTACTCCCTCTGTAAACTAATA 57.156 37.037 0.00 0.00 0.00 0.98
7815 7908 8.559175 AGTCTAGTACTCCCTCTGTAAACTAAT 58.441 37.037 0.00 0.00 30.33 1.73
7816 7909 7.926705 AGTCTAGTACTCCCTCTGTAAACTAA 58.073 38.462 0.00 0.00 30.33 2.24
7817 7910 7.507797 AGTCTAGTACTCCCTCTGTAAACTA 57.492 40.000 0.00 0.00 30.33 2.24
7818 7911 6.391479 AGTCTAGTACTCCCTCTGTAAACT 57.609 41.667 0.00 0.00 30.33 2.66
7819 7912 7.563906 TCTAGTCTAGTACTCCCTCTGTAAAC 58.436 42.308 0.00 0.00 39.80 2.01
7820 7913 7.746243 TCTAGTCTAGTACTCCCTCTGTAAA 57.254 40.000 0.00 0.00 39.80 2.01
7821 7914 7.622878 TCTTCTAGTCTAGTACTCCCTCTGTAA 59.377 40.741 0.00 0.00 39.80 2.41
7822 7915 7.131451 TCTTCTAGTCTAGTACTCCCTCTGTA 58.869 42.308 0.00 0.00 39.80 2.74
7823 7916 5.965705 TCTTCTAGTCTAGTACTCCCTCTGT 59.034 44.000 0.00 0.00 39.80 3.41
7824 7917 6.488769 TCTTCTAGTCTAGTACTCCCTCTG 57.511 45.833 0.00 0.00 39.80 3.35
7825 7918 6.847567 TCATCTTCTAGTCTAGTACTCCCTCT 59.152 42.308 0.00 0.00 39.80 3.69
7826 7919 6.932960 GTCATCTTCTAGTCTAGTACTCCCTC 59.067 46.154 0.00 0.00 39.80 4.30
7827 7920 6.618196 AGTCATCTTCTAGTCTAGTACTCCCT 59.382 42.308 0.00 0.00 39.80 4.20
7828 7921 6.834107 AGTCATCTTCTAGTCTAGTACTCCC 58.166 44.000 0.00 0.00 39.80 4.30
7829 7922 6.932960 GGAGTCATCTTCTAGTCTAGTACTCC 59.067 46.154 17.82 17.82 41.61 3.85
7830 7923 6.932960 GGGAGTCATCTTCTAGTCTAGTACTC 59.067 46.154 0.00 10.17 39.80 2.59
7831 7924 6.618196 AGGGAGTCATCTTCTAGTCTAGTACT 59.382 42.308 6.77 0.00 42.62 2.73
8315 8424 8.635765 TTCAAAGATATTAAGTTCCAGTTGCT 57.364 30.769 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.