Multiple sequence alignment - TraesCS4D01G320900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G320900 chr4D 100.000 3752 0 0 1 3752 483950285 483954036 0.000000e+00 6929.0
1 TraesCS4D01G320900 chr5A 92.970 2916 129 28 262 3137 663840871 663843750 0.000000e+00 4180.0
2 TraesCS4D01G320900 chr5A 83.251 1624 227 27 994 2607 569068239 569066651 0.000000e+00 1450.0
3 TraesCS4D01G320900 chr5A 85.156 128 17 1 3547 3672 663844307 663844434 3.040000e-26 130.0
4 TraesCS4D01G320900 chr5A 93.056 72 5 0 3470 3541 663844141 663844212 5.130000e-19 106.0
5 TraesCS4D01G320900 chr4B 94.710 2174 63 24 987 3157 614719785 614721909 0.000000e+00 3330.0
6 TraesCS4D01G320900 chr4B 87.143 210 20 4 3470 3673 614722335 614722543 8.100000e-57 231.0
7 TraesCS4D01G320900 chr4B 93.038 158 7 1 616 773 614719391 614719544 1.050000e-55 228.0
8 TraesCS4D01G320900 chr4B 86.555 119 8 2 478 596 614719289 614719399 1.410000e-24 124.0
9 TraesCS4D01G320900 chr5D 83.455 1650 247 21 975 2610 449688818 449687181 0.000000e+00 1511.0
10 TraesCS4D01G320900 chr2D 83.384 1643 243 19 1001 2631 643071129 643069505 0.000000e+00 1495.0
11 TraesCS4D01G320900 chr2D 83.139 1631 251 15 1001 2622 642965524 642967139 0.000000e+00 1467.0
12 TraesCS4D01G320900 chr2D 78.554 401 79 7 2 396 513553291 513553690 1.340000e-64 257.0
13 TraesCS4D01G320900 chr2A 83.109 1634 246 21 1001 2622 767952043 767950428 0.000000e+00 1461.0
14 TraesCS4D01G320900 chrUn 82.439 1640 263 15 1001 2631 31607124 31605501 0.000000e+00 1410.0
15 TraesCS4D01G320900 chrUn 100.000 28 0 0 424 451 341972821 341972794 7.000000e-03 52.8
16 TraesCS4D01G320900 chrUn 91.892 37 3 0 415 451 379283484 379283520 7.000000e-03 52.8
17 TraesCS4D01G320900 chrUn 91.892 37 3 0 415 451 396884752 396884788 7.000000e-03 52.8
18 TraesCS4D01G320900 chr5B 83.642 1406 207 17 1238 2630 549671417 549670022 0.000000e+00 1301.0
19 TraesCS4D01G320900 chr6B 78.125 288 52 10 3 287 554629722 554630001 4.980000e-39 172.0
20 TraesCS4D01G320900 chr3D 91.892 37 3 0 415 451 419826095 419826131 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G320900 chr4D 483950285 483954036 3751 False 6929.00 6929 100.0000 1 3752 1 chr4D.!!$F1 3751
1 TraesCS4D01G320900 chr5A 663840871 663844434 3563 False 1472.00 4180 90.3940 262 3672 3 chr5A.!!$F1 3410
2 TraesCS4D01G320900 chr5A 569066651 569068239 1588 True 1450.00 1450 83.2510 994 2607 1 chr5A.!!$R1 1613
3 TraesCS4D01G320900 chr4B 614719289 614722543 3254 False 978.25 3330 90.3615 478 3673 4 chr4B.!!$F1 3195
4 TraesCS4D01G320900 chr5D 449687181 449688818 1637 True 1511.00 1511 83.4550 975 2610 1 chr5D.!!$R1 1635
5 TraesCS4D01G320900 chr2D 643069505 643071129 1624 True 1495.00 1495 83.3840 1001 2631 1 chr2D.!!$R1 1630
6 TraesCS4D01G320900 chr2D 642965524 642967139 1615 False 1467.00 1467 83.1390 1001 2622 1 chr2D.!!$F2 1621
7 TraesCS4D01G320900 chr2A 767950428 767952043 1615 True 1461.00 1461 83.1090 1001 2622 1 chr2A.!!$R1 1621
8 TraesCS4D01G320900 chrUn 31605501 31607124 1623 True 1410.00 1410 82.4390 1001 2631 1 chrUn.!!$R1 1630
9 TraesCS4D01G320900 chr5B 549670022 549671417 1395 True 1301.00 1301 83.6420 1238 2630 1 chr5B.!!$R1 1392

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 551 0.031111 TACTCCCTGCCCACTAGCAT 60.031 55.0 0.0 0.0 43.09 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2808 2887 1.469703 ACCGTACGACATCATCACGAA 59.53 47.619 18.76 0.0 34.66 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.434884 ATTGCCGAGCGTGGTGAG 60.435 61.111 0.00 0.00 0.00 3.51
18 19 3.240134 ATTGCCGAGCGTGGTGAGT 62.240 57.895 0.00 0.00 0.00 3.41
21 22 2.697761 GCCGAGCGTGGTGAGTCTA 61.698 63.158 0.00 0.00 0.00 2.59
22 23 1.429825 CCGAGCGTGGTGAGTCTAG 59.570 63.158 0.00 0.00 0.00 2.43
23 24 1.226435 CGAGCGTGGTGAGTCTAGC 60.226 63.158 0.00 0.00 0.00 3.42
24 25 1.883732 GAGCGTGGTGAGTCTAGCA 59.116 57.895 0.00 0.00 0.00 3.49
25 26 0.179150 GAGCGTGGTGAGTCTAGCAG 60.179 60.000 0.00 0.00 0.00 4.24
26 27 0.896019 AGCGTGGTGAGTCTAGCAGT 60.896 55.000 0.00 0.00 0.00 4.40
27 28 0.809385 GCGTGGTGAGTCTAGCAGTA 59.191 55.000 0.00 0.00 0.00 2.74
28 29 1.202200 GCGTGGTGAGTCTAGCAGTAG 60.202 57.143 0.00 0.00 0.00 2.57
29 30 2.085320 CGTGGTGAGTCTAGCAGTAGT 58.915 52.381 0.00 0.00 0.00 2.73
30 31 2.159503 CGTGGTGAGTCTAGCAGTAGTG 60.160 54.545 0.00 0.00 0.00 2.74
31 32 2.164624 GTGGTGAGTCTAGCAGTAGTGG 59.835 54.545 0.00 0.00 0.00 4.00
32 33 2.041216 TGGTGAGTCTAGCAGTAGTGGA 59.959 50.000 0.00 0.00 0.00 4.02
33 34 3.292460 GGTGAGTCTAGCAGTAGTGGAT 58.708 50.000 0.00 0.00 0.00 3.41
34 35 3.067461 GGTGAGTCTAGCAGTAGTGGATG 59.933 52.174 0.00 0.00 0.00 3.51
35 36 3.067461 GTGAGTCTAGCAGTAGTGGATGG 59.933 52.174 0.00 0.00 0.00 3.51
36 37 3.292460 GAGTCTAGCAGTAGTGGATGGT 58.708 50.000 0.00 0.00 0.00 3.55
37 38 4.079958 TGAGTCTAGCAGTAGTGGATGGTA 60.080 45.833 0.00 0.00 0.00 3.25
38 39 4.208746 AGTCTAGCAGTAGTGGATGGTAC 58.791 47.826 0.00 0.00 0.00 3.34
39 40 3.318557 GTCTAGCAGTAGTGGATGGTACC 59.681 52.174 4.43 4.43 0.00 3.34
40 41 2.552093 AGCAGTAGTGGATGGTACCT 57.448 50.000 14.36 0.00 0.00 3.08
41 42 2.111384 AGCAGTAGTGGATGGTACCTG 58.889 52.381 14.36 0.23 0.00 4.00
42 43 1.139058 GCAGTAGTGGATGGTACCTGG 59.861 57.143 14.36 0.00 0.00 4.45
43 44 1.139058 CAGTAGTGGATGGTACCTGGC 59.861 57.143 14.36 2.02 0.00 4.85
44 45 1.200519 GTAGTGGATGGTACCTGGCA 58.799 55.000 14.36 0.00 0.00 4.92
45 46 1.139058 GTAGTGGATGGTACCTGGCAG 59.861 57.143 14.36 7.75 0.00 4.85
46 47 0.252696 AGTGGATGGTACCTGGCAGA 60.253 55.000 17.94 0.00 0.00 4.26
47 48 0.179000 GTGGATGGTACCTGGCAGAG 59.821 60.000 17.94 8.80 0.00 3.35
48 49 1.147153 GGATGGTACCTGGCAGAGC 59.853 63.158 17.94 7.30 0.00 4.09
59 60 4.200283 GCAGAGCCGTCGGAGGAG 62.200 72.222 17.49 2.48 0.00 3.69
60 61 2.438614 CAGAGCCGTCGGAGGAGA 60.439 66.667 17.49 0.00 0.00 3.71
61 62 2.124487 AGAGCCGTCGGAGGAGAG 60.124 66.667 17.49 0.00 0.00 3.20
62 63 3.213402 GAGCCGTCGGAGGAGAGG 61.213 72.222 17.49 0.00 0.00 3.69
63 64 4.824515 AGCCGTCGGAGGAGAGGG 62.825 72.222 17.49 1.76 45.96 4.30
65 66 4.444081 CCGTCGGAGGAGAGGGGT 62.444 72.222 4.91 0.00 41.17 4.95
66 67 2.362632 CGTCGGAGGAGAGGGGTT 60.363 66.667 0.00 0.00 0.00 4.11
67 68 2.711922 CGTCGGAGGAGAGGGGTTG 61.712 68.421 0.00 0.00 0.00 3.77
68 69 1.305046 GTCGGAGGAGAGGGGTTGA 60.305 63.158 0.00 0.00 0.00 3.18
69 70 0.903454 GTCGGAGGAGAGGGGTTGAA 60.903 60.000 0.00 0.00 0.00 2.69
70 71 0.903454 TCGGAGGAGAGGGGTTGAAC 60.903 60.000 0.00 0.00 0.00 3.18
71 72 1.597461 GGAGGAGAGGGGTTGAACG 59.403 63.158 0.00 0.00 0.00 3.95
72 73 1.597461 GAGGAGAGGGGTTGAACGG 59.403 63.158 0.00 0.00 0.00 4.44
73 74 2.046217 GGAGAGGGGTTGAACGGC 60.046 66.667 0.00 0.00 0.00 5.68
74 75 2.434359 GAGAGGGGTTGAACGGCG 60.434 66.667 4.80 4.80 0.00 6.46
75 76 2.920912 AGAGGGGTTGAACGGCGA 60.921 61.111 16.62 0.00 0.00 5.54
76 77 2.741211 GAGGGGTTGAACGGCGAC 60.741 66.667 16.62 7.98 0.00 5.19
77 78 3.236003 GAGGGGTTGAACGGCGACT 62.236 63.158 16.62 0.00 0.00 4.18
78 79 3.047877 GGGGTTGAACGGCGACTG 61.048 66.667 16.62 0.00 0.00 3.51
79 80 2.029964 GGGTTGAACGGCGACTGA 59.970 61.111 16.62 0.00 0.00 3.41
80 81 2.027625 GGGTTGAACGGCGACTGAG 61.028 63.158 16.62 0.00 0.00 3.35
81 82 2.027625 GGTTGAACGGCGACTGAGG 61.028 63.158 16.62 0.00 0.00 3.86
82 83 2.027625 GTTGAACGGCGACTGAGGG 61.028 63.158 16.62 0.00 0.00 4.30
83 84 3.234630 TTGAACGGCGACTGAGGGG 62.235 63.158 16.62 0.00 0.00 4.79
84 85 3.379445 GAACGGCGACTGAGGGGA 61.379 66.667 16.62 0.00 0.00 4.81
85 86 2.920912 AACGGCGACTGAGGGGAA 60.921 61.111 16.62 0.00 0.00 3.97
86 87 2.837371 GAACGGCGACTGAGGGGAAG 62.837 65.000 16.62 0.00 0.00 3.46
87 88 3.382832 CGGCGACTGAGGGGAAGT 61.383 66.667 0.00 0.00 0.00 3.01
88 89 2.266055 GGCGACTGAGGGGAAGTG 59.734 66.667 0.00 0.00 0.00 3.16
89 90 2.266055 GCGACTGAGGGGAAGTGG 59.734 66.667 0.00 0.00 0.00 4.00
90 91 2.982130 CGACTGAGGGGAAGTGGG 59.018 66.667 0.00 0.00 0.00 4.61
91 92 2.660064 CGACTGAGGGGAAGTGGGG 61.660 68.421 0.00 0.00 0.00 4.96
92 93 1.539124 GACTGAGGGGAAGTGGGGT 60.539 63.158 0.00 0.00 0.00 4.95
93 94 1.842381 GACTGAGGGGAAGTGGGGTG 61.842 65.000 0.00 0.00 0.00 4.61
94 95 2.531685 TGAGGGGAAGTGGGGTGG 60.532 66.667 0.00 0.00 0.00 4.61
95 96 2.204090 GAGGGGAAGTGGGGTGGA 60.204 66.667 0.00 0.00 0.00 4.02
96 97 2.204151 AGGGGAAGTGGGGTGGAG 60.204 66.667 0.00 0.00 0.00 3.86
97 98 4.048470 GGGGAAGTGGGGTGGAGC 62.048 72.222 0.00 0.00 0.00 4.70
98 99 4.048470 GGGAAGTGGGGTGGAGCC 62.048 72.222 0.00 0.00 0.00 4.70
107 108 3.081409 GGTGGAGCCCGGCTAGAA 61.081 66.667 13.29 0.00 39.88 2.10
108 109 2.187163 GTGGAGCCCGGCTAGAAC 59.813 66.667 13.29 7.38 39.88 3.01
109 110 3.458163 TGGAGCCCGGCTAGAACG 61.458 66.667 13.29 0.00 39.88 3.95
110 111 4.893601 GGAGCCCGGCTAGAACGC 62.894 72.222 13.29 0.00 39.88 4.84
111 112 3.839432 GAGCCCGGCTAGAACGCT 61.839 66.667 13.29 0.00 39.88 5.07
112 113 4.148825 AGCCCGGCTAGAACGCTG 62.149 66.667 11.25 0.00 36.99 5.18
116 117 2.583593 CGGCTAGAACGCTGGAGC 60.584 66.667 0.00 0.00 32.64 4.70
117 118 2.896443 GGCTAGAACGCTGGAGCT 59.104 61.111 0.00 0.00 39.32 4.09
118 119 1.520342 GGCTAGAACGCTGGAGCTG 60.520 63.158 0.00 0.00 39.32 4.24
119 120 1.513158 GCTAGAACGCTGGAGCTGA 59.487 57.895 0.00 0.00 39.32 4.26
120 121 0.804156 GCTAGAACGCTGGAGCTGAC 60.804 60.000 0.00 0.00 39.32 3.51
121 122 0.524392 CTAGAACGCTGGAGCTGACG 60.524 60.000 0.00 0.00 39.32 4.35
122 123 1.934220 TAGAACGCTGGAGCTGACGG 61.934 60.000 0.00 0.00 39.32 4.79
123 124 3.282745 GAACGCTGGAGCTGACGGA 62.283 63.158 0.00 0.00 39.32 4.69
124 125 3.288308 AACGCTGGAGCTGACGGAG 62.288 63.158 0.00 0.00 39.32 4.63
125 126 3.443925 CGCTGGAGCTGACGGAGA 61.444 66.667 0.00 0.00 39.32 3.71
126 127 2.183046 GCTGGAGCTGACGGAGAC 59.817 66.667 0.00 0.00 38.21 3.36
139 140 2.634809 GGAGACGTAGCGTTTCGAC 58.365 57.895 5.15 0.00 40.97 4.20
140 141 0.110056 GGAGACGTAGCGTTTCGACA 60.110 55.000 5.15 0.00 40.97 4.35
141 142 1.248721 GAGACGTAGCGTTTCGACAG 58.751 55.000 5.15 0.00 41.37 3.51
142 143 0.109873 AGACGTAGCGTTTCGACAGG 60.110 55.000 5.15 0.00 41.37 4.00
143 144 1.069378 GACGTAGCGTTTCGACAGGG 61.069 60.000 5.15 0.00 41.37 4.45
144 145 1.804326 CGTAGCGTTTCGACAGGGG 60.804 63.158 0.00 0.00 0.00 4.79
145 146 1.291272 GTAGCGTTTCGACAGGGGT 59.709 57.895 0.00 0.00 0.00 4.95
146 147 0.527565 GTAGCGTTTCGACAGGGGTA 59.472 55.000 0.00 0.00 0.00 3.69
147 148 1.135721 GTAGCGTTTCGACAGGGGTAT 59.864 52.381 0.00 0.00 0.00 2.73
148 149 0.108329 AGCGTTTCGACAGGGGTATG 60.108 55.000 0.00 0.00 0.00 2.39
149 150 1.087771 GCGTTTCGACAGGGGTATGG 61.088 60.000 0.00 0.00 0.00 2.74
150 151 1.087771 CGTTTCGACAGGGGTATGGC 61.088 60.000 0.00 0.00 0.00 4.40
153 154 2.202878 CGACAGGGGTATGGCGTG 60.203 66.667 0.00 0.00 46.75 5.34
154 155 2.717044 CGACAGGGGTATGGCGTGA 61.717 63.158 0.00 0.00 46.75 4.35
155 156 1.153429 GACAGGGGTATGGCGTGAC 60.153 63.158 0.00 0.00 0.00 3.67
156 157 1.895020 GACAGGGGTATGGCGTGACA 61.895 60.000 0.00 0.00 0.00 3.58
157 158 1.153369 CAGGGGTATGGCGTGACAG 60.153 63.158 0.00 0.00 0.00 3.51
158 159 2.513897 GGGGTATGGCGTGACAGC 60.514 66.667 0.00 0.00 0.00 4.40
159 160 2.890474 GGGTATGGCGTGACAGCG 60.890 66.667 0.00 0.00 38.18 5.18
160 161 2.890474 GGTATGGCGTGACAGCGG 60.890 66.667 0.00 0.00 38.18 5.52
161 162 2.890474 GTATGGCGTGACAGCGGG 60.890 66.667 0.00 0.00 38.18 6.13
162 163 4.155733 TATGGCGTGACAGCGGGG 62.156 66.667 0.00 0.00 38.18 5.73
176 177 4.351054 GGGGGTGGTGGAGCAGTG 62.351 72.222 0.00 0.00 0.00 3.66
177 178 4.351054 GGGGTGGTGGAGCAGTGG 62.351 72.222 0.00 0.00 0.00 4.00
179 180 4.269523 GGTGGTGGAGCAGTGGCA 62.270 66.667 0.00 0.00 44.61 4.92
180 181 2.203337 GTGGTGGAGCAGTGGCAA 60.203 61.111 0.00 0.00 44.61 4.52
181 182 1.827789 GTGGTGGAGCAGTGGCAAA 60.828 57.895 0.00 0.00 44.61 3.68
182 183 1.076412 TGGTGGAGCAGTGGCAAAA 60.076 52.632 0.00 0.00 44.61 2.44
183 184 1.108727 TGGTGGAGCAGTGGCAAAAG 61.109 55.000 0.00 0.00 44.61 2.27
184 185 1.006922 GTGGAGCAGTGGCAAAAGC 60.007 57.895 0.00 0.00 44.61 3.51
185 186 1.455402 TGGAGCAGTGGCAAAAGCA 60.455 52.632 9.30 0.00 44.61 3.91
186 187 1.042003 TGGAGCAGTGGCAAAAGCAA 61.042 50.000 9.30 0.00 44.61 3.91
187 188 0.319297 GGAGCAGTGGCAAAAGCAAG 60.319 55.000 9.30 0.00 44.61 4.01
188 189 0.670162 GAGCAGTGGCAAAAGCAAGA 59.330 50.000 9.30 0.00 44.61 3.02
189 190 0.672342 AGCAGTGGCAAAAGCAAGAG 59.328 50.000 9.30 0.00 44.61 2.85
190 191 0.670162 GCAGTGGCAAAAGCAAGAGA 59.330 50.000 0.00 0.00 40.72 3.10
191 192 1.335689 GCAGTGGCAAAAGCAAGAGAG 60.336 52.381 0.00 0.00 40.72 3.20
192 193 2.224606 CAGTGGCAAAAGCAAGAGAGA 58.775 47.619 0.00 0.00 0.00 3.10
193 194 2.620115 CAGTGGCAAAAGCAAGAGAGAA 59.380 45.455 0.00 0.00 0.00 2.87
194 195 3.067180 CAGTGGCAAAAGCAAGAGAGAAA 59.933 43.478 0.00 0.00 0.00 2.52
195 196 3.317430 AGTGGCAAAAGCAAGAGAGAAAG 59.683 43.478 0.00 0.00 0.00 2.62
196 197 3.316308 GTGGCAAAAGCAAGAGAGAAAGA 59.684 43.478 0.00 0.00 0.00 2.52
197 198 3.953612 TGGCAAAAGCAAGAGAGAAAGAA 59.046 39.130 0.00 0.00 0.00 2.52
198 199 4.037208 TGGCAAAAGCAAGAGAGAAAGAAG 59.963 41.667 0.00 0.00 0.00 2.85
199 200 4.544651 GCAAAAGCAAGAGAGAAAGAAGG 58.455 43.478 0.00 0.00 0.00 3.46
200 201 4.276926 GCAAAAGCAAGAGAGAAAGAAGGA 59.723 41.667 0.00 0.00 0.00 3.36
201 202 5.756849 CAAAAGCAAGAGAGAAAGAAGGAC 58.243 41.667 0.00 0.00 0.00 3.85
202 203 4.696479 AAGCAAGAGAGAAAGAAGGACA 57.304 40.909 0.00 0.00 0.00 4.02
203 204 4.696479 AGCAAGAGAGAAAGAAGGACAA 57.304 40.909 0.00 0.00 0.00 3.18
204 205 5.041191 AGCAAGAGAGAAAGAAGGACAAA 57.959 39.130 0.00 0.00 0.00 2.83
205 206 5.440610 AGCAAGAGAGAAAGAAGGACAAAA 58.559 37.500 0.00 0.00 0.00 2.44
206 207 5.888161 AGCAAGAGAGAAAGAAGGACAAAAA 59.112 36.000 0.00 0.00 0.00 1.94
224 225 4.718940 AAAAATAAGGTGGATGGAAGCG 57.281 40.909 0.00 0.00 0.00 4.68
225 226 1.680338 AATAAGGTGGATGGAAGCGC 58.320 50.000 0.00 0.00 0.00 5.92
226 227 0.532862 ATAAGGTGGATGGAAGCGCG 60.533 55.000 0.00 0.00 0.00 6.86
227 228 1.609635 TAAGGTGGATGGAAGCGCGA 61.610 55.000 12.10 0.00 0.00 5.87
228 229 2.859273 AAGGTGGATGGAAGCGCGAG 62.859 60.000 12.10 0.00 0.00 5.03
229 230 2.125512 GTGGATGGAAGCGCGAGT 60.126 61.111 12.10 0.00 0.00 4.18
230 231 2.167861 GTGGATGGAAGCGCGAGTC 61.168 63.158 12.10 5.44 0.00 3.36
231 232 2.586357 GGATGGAAGCGCGAGTCC 60.586 66.667 12.10 16.36 0.00 3.85
232 233 2.956964 GATGGAAGCGCGAGTCCG 60.957 66.667 12.10 0.00 36.65 4.79
233 234 4.514577 ATGGAAGCGCGAGTCCGG 62.515 66.667 12.10 0.00 36.65 5.14
235 236 3.818787 GGAAGCGCGAGTCCGGTA 61.819 66.667 12.10 0.00 38.06 4.02
236 237 2.180017 GAAGCGCGAGTCCGGTAA 59.820 61.111 12.10 0.00 38.06 2.85
237 238 1.226888 GAAGCGCGAGTCCGGTAAT 60.227 57.895 12.10 0.00 38.06 1.89
238 239 1.480219 GAAGCGCGAGTCCGGTAATG 61.480 60.000 12.10 0.00 38.06 1.90
239 240 2.901051 AAGCGCGAGTCCGGTAATGG 62.901 60.000 12.10 0.00 38.06 3.16
240 241 2.493030 CGCGAGTCCGGTAATGGT 59.507 61.111 0.00 0.00 36.06 3.55
241 242 1.153706 CGCGAGTCCGGTAATGGTT 60.154 57.895 0.00 0.00 36.06 3.67
242 243 0.738412 CGCGAGTCCGGTAATGGTTT 60.738 55.000 0.00 0.00 36.06 3.27
243 244 1.445871 GCGAGTCCGGTAATGGTTTT 58.554 50.000 0.00 0.00 36.06 2.43
244 245 1.129811 GCGAGTCCGGTAATGGTTTTG 59.870 52.381 0.00 0.00 36.06 2.44
245 246 2.690786 CGAGTCCGGTAATGGTTTTGA 58.309 47.619 0.00 0.00 0.00 2.69
246 247 2.671396 CGAGTCCGGTAATGGTTTTGAG 59.329 50.000 0.00 0.00 0.00 3.02
247 248 3.615592 CGAGTCCGGTAATGGTTTTGAGA 60.616 47.826 0.00 0.00 0.00 3.27
248 249 3.933332 GAGTCCGGTAATGGTTTTGAGAG 59.067 47.826 0.00 0.00 0.00 3.20
249 250 3.007635 GTCCGGTAATGGTTTTGAGAGG 58.992 50.000 0.00 0.00 0.00 3.69
250 251 2.026636 TCCGGTAATGGTTTTGAGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
251 252 1.743394 CGGTAATGGTTTTGAGAGGGC 59.257 52.381 0.00 0.00 0.00 5.19
252 253 2.802719 GGTAATGGTTTTGAGAGGGCA 58.197 47.619 0.00 0.00 0.00 5.36
253 254 2.755103 GGTAATGGTTTTGAGAGGGCAG 59.245 50.000 0.00 0.00 0.00 4.85
254 255 1.928868 AATGGTTTTGAGAGGGCAGG 58.071 50.000 0.00 0.00 0.00 4.85
255 256 1.075601 ATGGTTTTGAGAGGGCAGGA 58.924 50.000 0.00 0.00 0.00 3.86
256 257 0.401738 TGGTTTTGAGAGGGCAGGAG 59.598 55.000 0.00 0.00 0.00 3.69
257 258 0.402121 GGTTTTGAGAGGGCAGGAGT 59.598 55.000 0.00 0.00 0.00 3.85
258 259 1.528129 GTTTTGAGAGGGCAGGAGTG 58.472 55.000 0.00 0.00 0.00 3.51
259 260 1.140312 TTTTGAGAGGGCAGGAGTGT 58.860 50.000 0.00 0.00 0.00 3.55
260 261 0.687354 TTTGAGAGGGCAGGAGTGTC 59.313 55.000 0.00 0.00 0.00 3.67
267 268 4.803426 GCAGGAGTGTCGGAGGCG 62.803 72.222 0.00 0.00 28.88 5.52
302 303 1.461559 CGGACTCCGGTTAAGTCTCT 58.538 55.000 18.31 0.00 44.15 3.10
307 308 1.811359 CTCCGGTTAAGTCTCTCACGT 59.189 52.381 0.00 0.00 0.00 4.49
308 309 2.228343 CTCCGGTTAAGTCTCTCACGTT 59.772 50.000 0.00 0.00 0.00 3.99
317 318 2.894126 AGTCTCTCACGTTTGTCTCCAT 59.106 45.455 0.00 0.00 0.00 3.41
355 356 0.818445 TCTAGACTGGTCGGCGGATC 60.818 60.000 7.21 0.00 34.09 3.36
367 368 2.960170 CGGATCGATACGGACCCC 59.040 66.667 22.59 4.52 0.00 4.95
370 371 1.664306 GATCGATACGGACCCCCAC 59.336 63.158 0.00 0.00 0.00 4.61
373 374 2.504519 GATACGGACCCCCACTGC 59.495 66.667 0.00 0.00 0.00 4.40
402 403 1.487452 CGTGTTCGGGCCGTATGATG 61.487 60.000 27.32 8.95 0.00 3.07
408 409 1.227556 GGGCCGTATGATGCGAACT 60.228 57.895 4.06 0.00 0.00 3.01
413 414 2.157668 GCCGTATGATGCGAACTTATGG 59.842 50.000 4.06 0.00 0.00 2.74
414 415 3.649073 CCGTATGATGCGAACTTATGGA 58.351 45.455 4.06 0.00 0.00 3.41
449 450 3.403936 GCGTTGGAGATGCCCTAAT 57.596 52.632 0.00 0.00 34.03 1.73
450 451 2.543777 GCGTTGGAGATGCCCTAATA 57.456 50.000 0.00 0.00 34.03 0.98
453 454 3.139077 CGTTGGAGATGCCCTAATAACC 58.861 50.000 0.00 0.00 34.97 2.85
454 455 3.433031 CGTTGGAGATGCCCTAATAACCA 60.433 47.826 0.00 0.00 34.97 3.67
455 456 3.857157 TGGAGATGCCCTAATAACCAC 57.143 47.619 0.00 0.00 34.97 4.16
464 466 2.505819 CCCTAATAACCACAGGAGTGCT 59.494 50.000 0.00 0.00 44.53 4.40
535 537 0.381089 CATCGACCGGTCACTACTCC 59.619 60.000 32.80 5.45 0.00 3.85
537 539 1.378250 CGACCGGTCACTACTCCCT 60.378 63.158 32.80 0.00 0.00 4.20
538 540 1.654954 CGACCGGTCACTACTCCCTG 61.655 65.000 32.80 9.78 0.00 4.45
549 551 0.031111 TACTCCCTGCCCACTAGCAT 60.031 55.000 0.00 0.00 43.09 3.79
551 553 1.306911 TCCCTGCCCACTAGCATGA 60.307 57.895 0.00 0.00 43.09 3.07
563 565 1.204704 CTAGCATGAACAGTCCGGTCA 59.795 52.381 0.00 0.00 0.00 4.02
606 608 3.744719 GGCCCGGGAAAACGAAGC 61.745 66.667 29.31 4.51 35.47 3.86
607 609 2.671963 GCCCGGGAAAACGAAGCT 60.672 61.111 29.31 0.00 35.47 3.74
609 611 2.038837 CCCGGGAAAACGAAGCTCC 61.039 63.158 18.48 0.00 35.47 4.70
610 612 2.038837 CCGGGAAAACGAAGCTCCC 61.039 63.158 0.00 0.00 44.78 4.30
615 617 3.759527 GGAAAACGAAGCTCCCAATAC 57.240 47.619 0.00 0.00 0.00 1.89
616 618 2.422479 GGAAAACGAAGCTCCCAATACC 59.578 50.000 0.00 0.00 0.00 2.73
617 619 3.344515 GAAAACGAAGCTCCCAATACCT 58.655 45.455 0.00 0.00 0.00 3.08
618 620 2.403252 AACGAAGCTCCCAATACCTG 57.597 50.000 0.00 0.00 0.00 4.00
619 621 0.107654 ACGAAGCTCCCAATACCTGC 60.108 55.000 0.00 0.00 0.00 4.85
620 622 0.815615 CGAAGCTCCCAATACCTGCC 60.816 60.000 0.00 0.00 0.00 4.85
621 623 0.466372 GAAGCTCCCAATACCTGCCC 60.466 60.000 0.00 0.00 0.00 5.36
622 624 2.203209 GCTCCCAATACCTGCCCG 60.203 66.667 0.00 0.00 0.00 6.13
623 625 2.510906 CTCCCAATACCTGCCCGG 59.489 66.667 0.00 0.00 39.35 5.73
624 626 3.774599 CTCCCAATACCTGCCCGGC 62.775 68.421 1.04 1.04 35.61 6.13
625 627 4.894896 CCCAATACCTGCCCGGCC 62.895 72.222 7.03 0.00 35.61 6.13
627 629 4.169696 CAATACCTGCCCGGCCGA 62.170 66.667 30.73 5.58 35.61 5.54
628 630 3.861797 AATACCTGCCCGGCCGAG 61.862 66.667 30.73 16.89 35.61 4.63
826 828 3.992643 CAAATCACATTTGCTCCAACCA 58.007 40.909 0.00 0.00 42.57 3.67
841 843 4.699637 TCCAACCACTATATAAACAGCGG 58.300 43.478 0.00 0.00 0.00 5.52
979 995 1.337823 CCTACCCGTTTCAGGACACAG 60.338 57.143 0.00 0.00 0.00 3.66
980 996 0.034337 TACCCGTTTCAGGACACAGC 59.966 55.000 0.00 0.00 0.00 4.40
981 997 1.966451 CCCGTTTCAGGACACAGCC 60.966 63.158 0.00 0.00 0.00 4.85
982 998 2.317609 CCGTTTCAGGACACAGCCG 61.318 63.158 0.00 0.00 0.00 5.52
983 999 1.594293 CGTTTCAGGACACAGCCGT 60.594 57.895 0.00 0.00 0.00 5.68
984 1000 1.157870 CGTTTCAGGACACAGCCGTT 61.158 55.000 0.00 0.00 0.00 4.44
1659 1725 1.267574 TGCTCATGTCCTGGGAGGTC 61.268 60.000 0.00 0.00 36.53 3.85
1728 1794 1.847968 CTGGACCTTCACCTGGGGT 60.848 63.158 0.00 0.00 35.62 4.95
2043 2115 2.282462 CAGTGGGACAACCTGCCC 60.282 66.667 0.00 0.00 44.16 5.36
2810 2889 3.369835 CGTTCCTACGTGCATTTCTTC 57.630 47.619 0.00 0.00 42.72 2.87
2811 2890 2.222508 CGTTCCTACGTGCATTTCTTCG 60.223 50.000 0.00 0.00 42.72 3.79
2812 2891 2.735134 GTTCCTACGTGCATTTCTTCGT 59.265 45.455 0.00 3.25 39.74 3.85
2813 2892 2.333926 TCCTACGTGCATTTCTTCGTG 58.666 47.619 7.92 0.00 37.66 4.35
2814 2893 2.029739 TCCTACGTGCATTTCTTCGTGA 60.030 45.455 7.92 0.00 37.66 4.35
2831 2910 2.278094 CGTGATGATGTCGTACGGTTTC 59.722 50.000 16.52 10.00 0.00 2.78
2864 2943 6.235664 GTGGTTTGGTCAGGTAATTAAGAGA 58.764 40.000 0.00 0.00 0.00 3.10
2957 3040 1.002087 CAGGGAGTGCGGTTAAGACTT 59.998 52.381 0.00 0.00 0.00 3.01
2995 3083 6.849085 AGCTCTATTCTGTGTATAGGATGG 57.151 41.667 0.00 0.00 0.00 3.51
3141 3256 6.633500 AAGGAAATCTTCGTGTCAAATTCA 57.367 33.333 0.00 0.00 0.00 2.57
3166 3281 7.047460 TCTGTAAGAACTTAACCGAAAGTCT 57.953 36.000 0.00 0.00 42.31 3.24
3167 3282 8.169977 TCTGTAAGAACTTAACCGAAAGTCTA 57.830 34.615 0.00 0.00 42.31 2.59
3169 3284 7.945134 TGTAAGAACTTAACCGAAAGTCTAGT 58.055 34.615 0.00 0.00 38.76 2.57
3171 3286 9.899226 GTAAGAACTTAACCGAAAGTCTAGTAA 57.101 33.333 0.00 0.00 38.76 2.24
3188 3601 7.019356 AGTCTAGTAAGTATAATCTGCCCCCTA 59.981 40.741 0.00 0.00 0.00 3.53
3192 3605 2.846827 AGTATAATCTGCCCCCTATGCC 59.153 50.000 0.00 0.00 0.00 4.40
3196 3609 0.766674 ATCTGCCCCCTATGCCGTTA 60.767 55.000 0.00 0.00 0.00 3.18
3198 3611 2.281553 GCCCCCTATGCCGTTAGC 60.282 66.667 0.00 0.00 44.14 3.09
3199 3612 2.819284 GCCCCCTATGCCGTTAGCT 61.819 63.158 0.00 0.00 44.23 3.32
3200 3613 1.477685 GCCCCCTATGCCGTTAGCTA 61.478 60.000 0.00 0.00 44.23 3.32
3202 3615 0.320697 CCCCTATGCCGTTAGCTACC 59.679 60.000 0.00 0.00 44.23 3.18
3203 3616 1.045407 CCCTATGCCGTTAGCTACCA 58.955 55.000 0.00 0.00 44.23 3.25
3204 3617 1.623811 CCCTATGCCGTTAGCTACCAT 59.376 52.381 0.00 0.00 44.23 3.55
3205 3618 2.038557 CCCTATGCCGTTAGCTACCATT 59.961 50.000 0.00 0.00 44.23 3.16
3206 3619 3.496160 CCCTATGCCGTTAGCTACCATTT 60.496 47.826 0.00 0.00 44.23 2.32
3207 3620 3.498397 CCTATGCCGTTAGCTACCATTTG 59.502 47.826 0.00 0.00 44.23 2.32
3208 3621 2.772077 TGCCGTTAGCTACCATTTGA 57.228 45.000 0.00 0.00 44.23 2.69
3210 3623 1.326548 GCCGTTAGCTACCATTTGACG 59.673 52.381 0.00 0.00 38.99 4.35
3211 3624 2.883574 CCGTTAGCTACCATTTGACGA 58.116 47.619 12.24 0.00 0.00 4.20
3212 3625 3.255725 CCGTTAGCTACCATTTGACGAA 58.744 45.455 12.24 0.00 0.00 3.85
3213 3626 3.680937 CCGTTAGCTACCATTTGACGAAA 59.319 43.478 12.24 0.00 0.00 3.46
3214 3627 4.435121 CCGTTAGCTACCATTTGACGAAAC 60.435 45.833 12.24 0.00 0.00 2.78
3217 3630 3.335579 AGCTACCATTTGACGAAACCTC 58.664 45.455 0.00 0.00 0.00 3.85
3234 3647 0.035458 CTCGTCAAAGGTGGGAAGCT 59.965 55.000 0.00 0.00 0.00 3.74
3235 3648 0.034896 TCGTCAAAGGTGGGAAGCTC 59.965 55.000 0.00 0.00 0.00 4.09
3236 3649 0.955919 CGTCAAAGGTGGGAAGCTCC 60.956 60.000 0.00 0.00 35.23 4.70
3245 3658 2.751436 GGAAGCTCCCGCATTGCA 60.751 61.111 9.69 0.00 39.10 4.08
3246 3659 2.123428 GGAAGCTCCCGCATTGCAT 61.123 57.895 9.69 0.00 39.10 3.96
3247 3660 1.669999 GGAAGCTCCCGCATTGCATT 61.670 55.000 9.69 0.00 39.10 3.56
3248 3661 1.024271 GAAGCTCCCGCATTGCATTA 58.976 50.000 9.69 0.00 39.10 1.90
3249 3662 1.405105 GAAGCTCCCGCATTGCATTAA 59.595 47.619 9.69 0.00 39.10 1.40
3250 3663 1.473258 AGCTCCCGCATTGCATTAAA 58.527 45.000 9.69 0.00 39.10 1.52
3251 3664 1.824230 AGCTCCCGCATTGCATTAAAA 59.176 42.857 9.69 0.00 39.10 1.52
3252 3665 2.233431 AGCTCCCGCATTGCATTAAAAA 59.767 40.909 9.69 0.00 39.10 1.94
3283 3696 5.819825 CTGGTCCAGCTAATAAAGGAAAC 57.180 43.478 5.79 0.00 0.00 2.78
3284 3697 4.595986 TGGTCCAGCTAATAAAGGAAACC 58.404 43.478 0.00 0.00 0.00 3.27
3285 3698 3.626217 GGTCCAGCTAATAAAGGAAACCG 59.374 47.826 0.00 0.00 0.00 4.44
3286 3699 3.626217 GTCCAGCTAATAAAGGAAACCGG 59.374 47.826 0.00 0.00 0.00 5.28
3287 3700 3.520317 TCCAGCTAATAAAGGAAACCGGA 59.480 43.478 9.46 0.00 0.00 5.14
3288 3701 3.626217 CCAGCTAATAAAGGAAACCGGAC 59.374 47.826 9.46 0.00 0.00 4.79
3289 3702 3.308866 CAGCTAATAAAGGAAACCGGACG 59.691 47.826 9.46 0.00 0.00 4.79
3290 3703 3.196254 AGCTAATAAAGGAAACCGGACGA 59.804 43.478 9.46 0.00 0.00 4.20
3291 3704 3.934579 GCTAATAAAGGAAACCGGACGAA 59.065 43.478 9.46 0.00 0.00 3.85
3292 3705 4.392754 GCTAATAAAGGAAACCGGACGAAA 59.607 41.667 9.46 0.00 0.00 3.46
3293 3706 5.106594 GCTAATAAAGGAAACCGGACGAAAA 60.107 40.000 9.46 0.00 0.00 2.29
3294 3707 5.771153 AATAAAGGAAACCGGACGAAAAA 57.229 34.783 9.46 0.00 0.00 1.94
3319 3732 6.539649 CCATACATGGTACGGTTAATCAAG 57.460 41.667 0.00 0.00 43.05 3.02
3320 3733 5.468746 CCATACATGGTACGGTTAATCAAGG 59.531 44.000 0.00 0.00 43.05 3.61
3321 3734 4.563140 ACATGGTACGGTTAATCAAGGT 57.437 40.909 0.00 0.00 0.00 3.50
3322 3735 5.680594 ACATGGTACGGTTAATCAAGGTA 57.319 39.130 0.00 0.00 0.00 3.08
3323 3736 6.052405 ACATGGTACGGTTAATCAAGGTAA 57.948 37.500 0.00 0.00 0.00 2.85
3324 3737 6.474630 ACATGGTACGGTTAATCAAGGTAAA 58.525 36.000 0.00 0.00 0.00 2.01
3325 3738 6.372381 ACATGGTACGGTTAATCAAGGTAAAC 59.628 38.462 0.00 0.00 0.00 2.01
3326 3739 5.244755 TGGTACGGTTAATCAAGGTAAACC 58.755 41.667 0.00 0.00 38.40 3.27
3329 3742 3.770263 GGTTAATCAAGGTAAACCGGC 57.230 47.619 0.00 0.00 42.08 6.13
3330 3743 3.083293 GGTTAATCAAGGTAAACCGGCA 58.917 45.455 0.00 0.00 42.08 5.69
3331 3744 3.506844 GGTTAATCAAGGTAAACCGGCAA 59.493 43.478 0.00 0.00 42.08 4.52
3332 3745 4.022155 GGTTAATCAAGGTAAACCGGCAAA 60.022 41.667 0.00 0.00 42.08 3.68
3333 3746 3.934457 AATCAAGGTAAACCGGCAAAG 57.066 42.857 0.00 0.00 42.08 2.77
3334 3747 2.642154 TCAAGGTAAACCGGCAAAGA 57.358 45.000 0.00 0.00 42.08 2.52
3335 3748 2.223745 TCAAGGTAAACCGGCAAAGAC 58.776 47.619 0.00 0.00 42.08 3.01
3336 3749 1.268625 CAAGGTAAACCGGCAAAGACC 59.731 52.381 0.00 1.95 42.08 3.85
3337 3750 0.475044 AGGTAAACCGGCAAAGACCA 59.525 50.000 0.00 0.00 42.08 4.02
3338 3751 0.594602 GGTAAACCGGCAAAGACCAC 59.405 55.000 0.00 0.00 0.00 4.16
3339 3752 1.310904 GTAAACCGGCAAAGACCACA 58.689 50.000 0.00 0.00 0.00 4.17
3340 3753 1.002142 GTAAACCGGCAAAGACCACAC 60.002 52.381 0.00 0.00 0.00 3.82
3341 3754 0.681564 AAACCGGCAAAGACCACACA 60.682 50.000 0.00 0.00 0.00 3.72
3342 3755 1.381165 AACCGGCAAAGACCACACAC 61.381 55.000 0.00 0.00 0.00 3.82
3377 3790 1.665735 CGTGTAAACATGCAAGGCCAC 60.666 52.381 5.01 0.00 0.00 5.01
3397 3810 6.099341 GCCACACAAGTCTTATTAAAATGGG 58.901 40.000 0.00 0.00 0.00 4.00
3414 3827 0.831307 GGGATCAACTAACCGCTCCT 59.169 55.000 0.00 0.00 0.00 3.69
3432 3845 2.039216 TCCTACTGAACGCCATTTTCCA 59.961 45.455 0.00 0.00 0.00 3.53
3433 3846 2.817258 CCTACTGAACGCCATTTTCCAA 59.183 45.455 0.00 0.00 0.00 3.53
3434 3847 3.254657 CCTACTGAACGCCATTTTCCAAA 59.745 43.478 0.00 0.00 0.00 3.28
3435 3848 3.369546 ACTGAACGCCATTTTCCAAAG 57.630 42.857 0.00 0.00 0.00 2.77
3436 3849 2.955660 ACTGAACGCCATTTTCCAAAGA 59.044 40.909 0.00 0.00 0.00 2.52
3437 3850 3.004734 ACTGAACGCCATTTTCCAAAGAG 59.995 43.478 0.00 0.00 0.00 2.85
3438 3851 2.955660 TGAACGCCATTTTCCAAAGAGT 59.044 40.909 0.00 0.00 0.00 3.24
3439 3852 3.243367 TGAACGCCATTTTCCAAAGAGTG 60.243 43.478 0.00 0.00 0.00 3.51
3440 3853 2.582052 ACGCCATTTTCCAAAGAGTGA 58.418 42.857 0.00 0.00 0.00 3.41
3441 3854 3.157087 ACGCCATTTTCCAAAGAGTGAT 58.843 40.909 0.00 0.00 0.00 3.06
3442 3855 4.331968 ACGCCATTTTCCAAAGAGTGATA 58.668 39.130 0.00 0.00 0.00 2.15
3443 3856 4.396166 ACGCCATTTTCCAAAGAGTGATAG 59.604 41.667 0.00 0.00 0.00 2.08
3444 3857 4.396166 CGCCATTTTCCAAAGAGTGATAGT 59.604 41.667 0.00 0.00 0.00 2.12
3445 3858 5.644644 GCCATTTTCCAAAGAGTGATAGTG 58.355 41.667 0.00 0.00 0.00 2.74
3446 3859 5.415701 GCCATTTTCCAAAGAGTGATAGTGA 59.584 40.000 0.00 0.00 0.00 3.41
3447 3860 6.096001 GCCATTTTCCAAAGAGTGATAGTGAT 59.904 38.462 0.00 0.00 0.00 3.06
3448 3861 7.283127 GCCATTTTCCAAAGAGTGATAGTGATA 59.717 37.037 0.00 0.00 0.00 2.15
3449 3862 8.616076 CCATTTTCCAAAGAGTGATAGTGATAC 58.384 37.037 0.00 0.00 0.00 2.24
3450 3863 8.616076 CATTTTCCAAAGAGTGATAGTGATACC 58.384 37.037 0.00 0.00 0.00 2.73
3451 3864 7.496346 TTTCCAAAGAGTGATAGTGATACCT 57.504 36.000 0.00 0.00 0.00 3.08
3452 3865 6.716934 TCCAAAGAGTGATAGTGATACCTC 57.283 41.667 0.00 0.00 0.00 3.85
3453 3866 6.436027 TCCAAAGAGTGATAGTGATACCTCT 58.564 40.000 0.00 0.00 0.00 3.69
3454 3867 6.897966 TCCAAAGAGTGATAGTGATACCTCTT 59.102 38.462 0.00 0.00 0.00 2.85
3455 3868 7.400339 TCCAAAGAGTGATAGTGATACCTCTTT 59.600 37.037 6.63 6.63 39.53 2.52
3456 3869 8.043710 CCAAAGAGTGATAGTGATACCTCTTTT 58.956 37.037 9.14 0.00 37.68 2.27
3457 3870 8.877779 CAAAGAGTGATAGTGATACCTCTTTTG 58.122 37.037 9.14 3.59 37.68 2.44
3458 3871 7.726033 AGAGTGATAGTGATACCTCTTTTGT 57.274 36.000 0.00 0.00 0.00 2.83
3459 3872 8.140112 AGAGTGATAGTGATACCTCTTTTGTT 57.860 34.615 0.00 0.00 0.00 2.83
3460 3873 8.598041 AGAGTGATAGTGATACCTCTTTTGTTT 58.402 33.333 0.00 0.00 0.00 2.83
3461 3874 9.220767 GAGTGATAGTGATACCTCTTTTGTTTT 57.779 33.333 0.00 0.00 0.00 2.43
3462 3875 9.574516 AGTGATAGTGATACCTCTTTTGTTTTT 57.425 29.630 0.00 0.00 0.00 1.94
3463 3876 9.612620 GTGATAGTGATACCTCTTTTGTTTTTG 57.387 33.333 0.00 0.00 0.00 2.44
3464 3877 8.296713 TGATAGTGATACCTCTTTTGTTTTTGC 58.703 33.333 0.00 0.00 0.00 3.68
3465 3878 5.519722 AGTGATACCTCTTTTGTTTTTGCG 58.480 37.500 0.00 0.00 0.00 4.85
3466 3879 4.679654 GTGATACCTCTTTTGTTTTTGCGG 59.320 41.667 0.00 0.00 0.00 5.69
3467 3880 4.580995 TGATACCTCTTTTGTTTTTGCGGA 59.419 37.500 0.00 0.00 0.00 5.54
3468 3881 3.436700 ACCTCTTTTGTTTTTGCGGAG 57.563 42.857 0.00 0.00 0.00 4.63
3490 3903 7.117236 CGGAGAAGAGTGATAGTGATACTACTC 59.883 44.444 0.00 0.00 32.84 2.59
3503 3916 5.690857 GTGATACTACTCGCCAGAAATTACC 59.309 44.000 0.00 0.00 0.00 2.85
3511 3924 2.874701 CGCCAGAAATTACCATCTCCTG 59.125 50.000 0.00 0.00 0.00 3.86
3541 3954 1.393883 GGTTTACGCTAGCTGCAAGAC 59.606 52.381 13.93 3.95 43.06 3.01
3616 4121 1.662876 CGTTTCAACGCATTGTGAGGG 60.663 52.381 3.82 0.00 46.06 4.30
3617 4122 1.336755 GTTTCAACGCATTGTGAGGGT 59.663 47.619 3.82 0.00 37.11 4.34
3618 4123 0.950836 TTCAACGCATTGTGAGGGTG 59.049 50.000 3.82 0.00 37.11 4.61
3649 4154 8.753175 GCTGTACGAACTCGATTAAATCTATTT 58.247 33.333 6.05 0.00 43.02 1.40
3658 4163 7.280876 ACTCGATTAAATCTATTTGCTTGCTCA 59.719 33.333 0.00 0.00 0.00 4.26
3659 4164 7.984391 TCGATTAAATCTATTTGCTTGCTCAA 58.016 30.769 0.00 0.00 0.00 3.02
3668 4173 2.105006 TGCTTGCTCAACCATCTCTC 57.895 50.000 0.00 0.00 0.00 3.20
3673 4178 1.067565 TGCTCAACCATCTCTCGTGTC 60.068 52.381 0.00 0.00 0.00 3.67
3674 4179 1.737363 GCTCAACCATCTCTCGTGTCC 60.737 57.143 0.00 0.00 0.00 4.02
3675 4180 0.526211 TCAACCATCTCTCGTGTCCG 59.474 55.000 0.00 0.00 0.00 4.79
3676 4181 0.458543 CAACCATCTCTCGTGTCCGG 60.459 60.000 0.00 0.00 33.95 5.14
3677 4182 0.898789 AACCATCTCTCGTGTCCGGT 60.899 55.000 0.00 0.00 33.95 5.28
3678 4183 0.898789 ACCATCTCTCGTGTCCGGTT 60.899 55.000 0.00 0.00 33.95 4.44
3679 4184 0.458543 CCATCTCTCGTGTCCGGTTG 60.459 60.000 0.00 0.00 33.95 3.77
3680 4185 0.458543 CATCTCTCGTGTCCGGTTGG 60.459 60.000 0.00 0.00 33.95 3.77
3681 4186 2.227089 ATCTCTCGTGTCCGGTTGGC 62.227 60.000 0.00 0.00 34.14 4.52
3682 4187 3.220999 CTCTCGTGTCCGGTTGGCA 62.221 63.158 0.00 0.00 34.14 4.92
3683 4188 2.738521 CTCGTGTCCGGTTGGCAG 60.739 66.667 0.00 0.00 34.14 4.85
3684 4189 3.515316 CTCGTGTCCGGTTGGCAGT 62.515 63.158 0.00 0.00 34.14 4.40
3685 4190 2.590575 CGTGTCCGGTTGGCAGTT 60.591 61.111 0.00 0.00 34.14 3.16
3686 4191 2.184167 CGTGTCCGGTTGGCAGTTT 61.184 57.895 0.00 0.00 34.14 2.66
3687 4192 1.358759 GTGTCCGGTTGGCAGTTTG 59.641 57.895 0.00 0.00 34.14 2.93
3688 4193 1.826054 TGTCCGGTTGGCAGTTTGG 60.826 57.895 0.00 0.00 34.14 3.28
3689 4194 1.527380 GTCCGGTTGGCAGTTTGGA 60.527 57.895 0.00 0.00 34.14 3.53
3690 4195 0.893727 GTCCGGTTGGCAGTTTGGAT 60.894 55.000 0.00 0.00 34.14 3.41
3691 4196 0.693622 TCCGGTTGGCAGTTTGGATA 59.306 50.000 0.00 0.00 34.14 2.59
3692 4197 1.074084 TCCGGTTGGCAGTTTGGATAA 59.926 47.619 0.00 0.00 34.14 1.75
3693 4198 1.889829 CCGGTTGGCAGTTTGGATAAA 59.110 47.619 0.00 0.00 0.00 1.40
3694 4199 2.297597 CCGGTTGGCAGTTTGGATAAAA 59.702 45.455 0.00 0.00 0.00 1.52
3695 4200 3.574614 CGGTTGGCAGTTTGGATAAAAG 58.425 45.455 0.00 0.00 0.00 2.27
3696 4201 3.254657 CGGTTGGCAGTTTGGATAAAAGA 59.745 43.478 0.00 0.00 0.00 2.52
3697 4202 4.615912 CGGTTGGCAGTTTGGATAAAAGAG 60.616 45.833 0.00 0.00 0.00 2.85
3698 4203 4.522789 GGTTGGCAGTTTGGATAAAAGAGA 59.477 41.667 0.00 0.00 0.00 3.10
3699 4204 5.335976 GGTTGGCAGTTTGGATAAAAGAGAG 60.336 44.000 0.00 0.00 0.00 3.20
3700 4205 3.758554 TGGCAGTTTGGATAAAAGAGAGC 59.241 43.478 0.00 0.00 0.00 4.09
3701 4206 3.181506 GGCAGTTTGGATAAAAGAGAGCG 60.182 47.826 0.00 0.00 0.00 5.03
3702 4207 3.684788 GCAGTTTGGATAAAAGAGAGCGA 59.315 43.478 0.00 0.00 0.00 4.93
3703 4208 4.436183 GCAGTTTGGATAAAAGAGAGCGAC 60.436 45.833 0.00 0.00 0.00 5.19
3704 4209 4.093556 CAGTTTGGATAAAAGAGAGCGACC 59.906 45.833 0.00 0.00 0.00 4.79
3705 4210 3.973206 TTGGATAAAAGAGAGCGACCA 57.027 42.857 0.00 0.00 0.00 4.02
3706 4211 3.247006 TGGATAAAAGAGAGCGACCAC 57.753 47.619 0.00 0.00 0.00 4.16
3707 4212 2.194271 GGATAAAAGAGAGCGACCACG 58.806 52.381 0.00 0.00 42.93 4.94
3708 4213 2.159282 GGATAAAAGAGAGCGACCACGA 60.159 50.000 0.00 0.00 42.66 4.35
3709 4214 2.342910 TAAAAGAGAGCGACCACGAC 57.657 50.000 0.00 0.00 42.66 4.34
3710 4215 0.319641 AAAAGAGAGCGACCACGACC 60.320 55.000 0.00 0.00 42.66 4.79
3711 4216 2.156051 AAAGAGAGCGACCACGACCC 62.156 60.000 0.00 0.00 42.66 4.46
3712 4217 4.131088 GAGAGCGACCACGACCCC 62.131 72.222 0.00 0.00 42.66 4.95
3713 4218 4.988716 AGAGCGACCACGACCCCA 62.989 66.667 0.00 0.00 42.66 4.96
3714 4219 3.998672 GAGCGACCACGACCCCAA 61.999 66.667 0.00 0.00 42.66 4.12
3715 4220 3.934391 GAGCGACCACGACCCCAAG 62.934 68.421 0.00 0.00 42.66 3.61
3717 4222 4.308458 CGACCACGACCCCAAGCA 62.308 66.667 0.00 0.00 42.66 3.91
3718 4223 2.358737 GACCACGACCCCAAGCAG 60.359 66.667 0.00 0.00 0.00 4.24
3719 4224 4.643387 ACCACGACCCCAAGCAGC 62.643 66.667 0.00 0.00 0.00 5.25
3720 4225 4.335647 CCACGACCCCAAGCAGCT 62.336 66.667 0.00 0.00 0.00 4.24
3721 4226 2.743928 CACGACCCCAAGCAGCTC 60.744 66.667 0.00 0.00 0.00 4.09
3722 4227 3.241530 ACGACCCCAAGCAGCTCA 61.242 61.111 0.00 0.00 0.00 4.26
3723 4228 2.270205 CGACCCCAAGCAGCTCAT 59.730 61.111 0.00 0.00 0.00 2.90
3724 4229 2.110967 CGACCCCAAGCAGCTCATG 61.111 63.158 0.00 0.00 0.00 3.07
3725 4230 1.001641 GACCCCAAGCAGCTCATGT 60.002 57.895 0.00 0.00 0.00 3.21
3726 4231 1.303888 ACCCCAAGCAGCTCATGTG 60.304 57.895 0.00 0.00 0.00 3.21
3727 4232 2.707849 CCCCAAGCAGCTCATGTGC 61.708 63.158 11.79 11.79 41.54 4.57
3728 4233 2.483745 CCAAGCAGCTCATGTGCG 59.516 61.111 13.68 9.98 46.06 5.34
3729 4234 2.483745 CAAGCAGCTCATGTGCGG 59.516 61.111 14.41 14.41 46.06 5.69
3733 4238 4.156622 CAGCTCATGTGCGGCGTG 62.157 66.667 13.68 0.00 38.13 5.34
3734 4239 4.687215 AGCTCATGTGCGGCGTGT 62.687 61.111 13.68 0.00 38.13 4.49
3735 4240 4.450122 GCTCATGTGCGGCGTGTG 62.450 66.667 9.37 0.51 35.64 3.82
3736 4241 2.738139 CTCATGTGCGGCGTGTGA 60.738 61.111 9.37 7.09 35.64 3.58
3737 4242 2.733671 CTCATGTGCGGCGTGTGAG 61.734 63.158 9.37 12.85 35.64 3.51
3738 4243 4.450122 CATGTGCGGCGTGTGAGC 62.450 66.667 9.37 0.00 0.00 4.26
3739 4244 4.687215 ATGTGCGGCGTGTGAGCT 62.687 61.111 9.37 0.00 37.29 4.09
3744 4249 3.114616 CGGCGTGTGAGCTCCAAG 61.115 66.667 12.15 11.89 37.29 3.61
3745 4250 2.031163 GGCGTGTGAGCTCCAAGT 59.969 61.111 12.15 0.00 37.29 3.16
3746 4251 2.029844 GGCGTGTGAGCTCCAAGTC 61.030 63.158 12.15 8.95 37.29 3.01
3747 4252 1.300931 GCGTGTGAGCTCCAAGTCA 60.301 57.895 12.15 0.06 0.00 3.41
3748 4253 0.880278 GCGTGTGAGCTCCAAGTCAA 60.880 55.000 12.15 0.00 0.00 3.18
3749 4254 1.143305 CGTGTGAGCTCCAAGTCAAG 58.857 55.000 12.15 1.94 0.00 3.02
3750 4255 0.871057 GTGTGAGCTCCAAGTCAAGC 59.129 55.000 12.15 0.00 38.84 4.01
3751 4256 0.469494 TGTGAGCTCCAAGTCAAGCA 59.531 50.000 12.15 0.00 41.06 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.858868 GACTCACCACGCTCGGCAA 62.859 63.158 0.00 0.00 0.00 4.52
2 3 4.357947 GACTCACCACGCTCGGCA 62.358 66.667 0.00 0.00 0.00 5.69
3 4 2.600122 CTAGACTCACCACGCTCGGC 62.600 65.000 0.00 0.00 0.00 5.54
4 5 1.429825 CTAGACTCACCACGCTCGG 59.570 63.158 0.00 0.00 0.00 4.63
5 6 1.226435 GCTAGACTCACCACGCTCG 60.226 63.158 0.00 0.00 0.00 5.03
6 7 0.179150 CTGCTAGACTCACCACGCTC 60.179 60.000 0.00 0.00 0.00 5.03
8 9 0.809385 TACTGCTAGACTCACCACGC 59.191 55.000 0.00 0.00 0.00 5.34
9 10 2.085320 ACTACTGCTAGACTCACCACG 58.915 52.381 0.00 0.00 0.00 4.94
12 13 2.724454 TCCACTACTGCTAGACTCACC 58.276 52.381 0.00 0.00 0.00 4.02
13 14 3.067461 CCATCCACTACTGCTAGACTCAC 59.933 52.174 0.00 0.00 0.00 3.51
16 17 3.390175 ACCATCCACTACTGCTAGACT 57.610 47.619 0.00 0.00 0.00 3.24
17 18 3.318557 GGTACCATCCACTACTGCTAGAC 59.681 52.174 7.15 0.00 0.00 2.59
18 19 3.204606 AGGTACCATCCACTACTGCTAGA 59.795 47.826 15.94 0.00 0.00 2.43
21 22 2.111384 CAGGTACCATCCACTACTGCT 58.889 52.381 15.94 0.00 0.00 4.24
22 23 1.139058 CCAGGTACCATCCACTACTGC 59.861 57.143 15.94 0.00 0.00 4.40
23 24 1.139058 GCCAGGTACCATCCACTACTG 59.861 57.143 15.94 0.00 0.00 2.74
24 25 1.273609 TGCCAGGTACCATCCACTACT 60.274 52.381 15.94 0.00 0.00 2.57
25 26 1.139058 CTGCCAGGTACCATCCACTAC 59.861 57.143 15.94 0.00 0.00 2.73
26 27 1.007842 TCTGCCAGGTACCATCCACTA 59.992 52.381 15.94 0.00 0.00 2.74
27 28 0.252696 TCTGCCAGGTACCATCCACT 60.253 55.000 15.94 0.00 0.00 4.00
28 29 0.179000 CTCTGCCAGGTACCATCCAC 59.821 60.000 15.94 0.00 0.00 4.02
29 30 1.626356 GCTCTGCCAGGTACCATCCA 61.626 60.000 15.94 6.45 0.00 3.41
30 31 1.147153 GCTCTGCCAGGTACCATCC 59.853 63.158 15.94 1.53 0.00 3.51
31 32 4.865865 GCTCTGCCAGGTACCATC 57.134 61.111 15.94 2.80 0.00 3.51
42 43 4.200283 CTCCTCCGACGGCTCTGC 62.200 72.222 9.66 0.00 0.00 4.26
43 44 2.438614 TCTCCTCCGACGGCTCTG 60.439 66.667 9.66 0.00 0.00 3.35
44 45 2.124487 CTCTCCTCCGACGGCTCT 60.124 66.667 9.66 0.00 0.00 4.09
45 46 3.213402 CCTCTCCTCCGACGGCTC 61.213 72.222 9.66 0.00 0.00 4.70
46 47 4.824515 CCCTCTCCTCCGACGGCT 62.825 72.222 9.66 0.00 0.00 5.52
48 49 3.959329 AACCCCTCTCCTCCGACGG 62.959 68.421 7.84 7.84 0.00 4.79
49 50 2.362632 AACCCCTCTCCTCCGACG 60.363 66.667 0.00 0.00 0.00 5.12
50 51 0.903454 TTCAACCCCTCTCCTCCGAC 60.903 60.000 0.00 0.00 0.00 4.79
51 52 0.903454 GTTCAACCCCTCTCCTCCGA 60.903 60.000 0.00 0.00 0.00 4.55
52 53 1.597461 GTTCAACCCCTCTCCTCCG 59.403 63.158 0.00 0.00 0.00 4.63
53 54 1.597461 CGTTCAACCCCTCTCCTCC 59.403 63.158 0.00 0.00 0.00 4.30
54 55 1.597461 CCGTTCAACCCCTCTCCTC 59.403 63.158 0.00 0.00 0.00 3.71
55 56 2.593956 GCCGTTCAACCCCTCTCCT 61.594 63.158 0.00 0.00 0.00 3.69
56 57 2.046217 GCCGTTCAACCCCTCTCC 60.046 66.667 0.00 0.00 0.00 3.71
57 58 2.434359 CGCCGTTCAACCCCTCTC 60.434 66.667 0.00 0.00 0.00 3.20
58 59 2.920912 TCGCCGTTCAACCCCTCT 60.921 61.111 0.00 0.00 0.00 3.69
59 60 2.741211 GTCGCCGTTCAACCCCTC 60.741 66.667 0.00 0.00 0.00 4.30
60 61 3.239253 AGTCGCCGTTCAACCCCT 61.239 61.111 0.00 0.00 0.00 4.79
61 62 3.047877 CAGTCGCCGTTCAACCCC 61.048 66.667 0.00 0.00 0.00 4.95
62 63 2.027625 CTCAGTCGCCGTTCAACCC 61.028 63.158 0.00 0.00 0.00 4.11
63 64 2.027625 CCTCAGTCGCCGTTCAACC 61.028 63.158 0.00 0.00 0.00 3.77
64 65 2.027625 CCCTCAGTCGCCGTTCAAC 61.028 63.158 0.00 0.00 0.00 3.18
65 66 2.342279 CCCTCAGTCGCCGTTCAA 59.658 61.111 0.00 0.00 0.00 2.69
66 67 3.691342 CCCCTCAGTCGCCGTTCA 61.691 66.667 0.00 0.00 0.00 3.18
67 68 2.837371 CTTCCCCTCAGTCGCCGTTC 62.837 65.000 0.00 0.00 0.00 3.95
68 69 2.920912 TTCCCCTCAGTCGCCGTT 60.921 61.111 0.00 0.00 0.00 4.44
69 70 3.382832 CTTCCCCTCAGTCGCCGT 61.383 66.667 0.00 0.00 0.00 5.68
70 71 3.382832 ACTTCCCCTCAGTCGCCG 61.383 66.667 0.00 0.00 0.00 6.46
71 72 2.266055 CACTTCCCCTCAGTCGCC 59.734 66.667 0.00 0.00 0.00 5.54
72 73 2.266055 CCACTTCCCCTCAGTCGC 59.734 66.667 0.00 0.00 0.00 5.19
73 74 2.660064 CCCCACTTCCCCTCAGTCG 61.660 68.421 0.00 0.00 0.00 4.18
74 75 1.539124 ACCCCACTTCCCCTCAGTC 60.539 63.158 0.00 0.00 0.00 3.51
75 76 1.847968 CACCCCACTTCCCCTCAGT 60.848 63.158 0.00 0.00 0.00 3.41
76 77 2.606587 CCACCCCACTTCCCCTCAG 61.607 68.421 0.00 0.00 0.00 3.35
77 78 2.531685 CCACCCCACTTCCCCTCA 60.532 66.667 0.00 0.00 0.00 3.86
78 79 2.204090 TCCACCCCACTTCCCCTC 60.204 66.667 0.00 0.00 0.00 4.30
79 80 2.204151 CTCCACCCCACTTCCCCT 60.204 66.667 0.00 0.00 0.00 4.79
80 81 4.048470 GCTCCACCCCACTTCCCC 62.048 72.222 0.00 0.00 0.00 4.81
81 82 4.048470 GGCTCCACCCCACTTCCC 62.048 72.222 0.00 0.00 0.00 3.97
90 91 3.081409 TTCTAGCCGGGCTCCACC 61.081 66.667 27.65 0.00 40.44 4.61
91 92 2.187163 GTTCTAGCCGGGCTCCAC 59.813 66.667 27.65 16.48 40.44 4.02
92 93 3.458163 CGTTCTAGCCGGGCTCCA 61.458 66.667 27.65 10.56 40.44 3.86
93 94 4.893601 GCGTTCTAGCCGGGCTCC 62.894 72.222 27.65 11.09 40.44 4.70
94 95 3.839432 AGCGTTCTAGCCGGGCTC 61.839 66.667 27.65 10.31 40.44 4.70
95 96 4.148825 CAGCGTTCTAGCCGGGCT 62.149 66.667 26.95 26.95 43.41 5.19
97 98 3.432051 CTCCAGCGTTCTAGCCGGG 62.432 68.421 2.18 0.00 35.47 5.73
98 99 2.105128 CTCCAGCGTTCTAGCCGG 59.895 66.667 0.00 0.00 38.01 6.13
99 100 2.583593 GCTCCAGCGTTCTAGCCG 60.584 66.667 0.00 0.00 38.01 5.52
109 110 2.183046 GTCTCCGTCAGCTCCAGC 59.817 66.667 0.00 0.00 42.49 4.85
110 111 1.025113 TACGTCTCCGTCAGCTCCAG 61.025 60.000 0.00 0.00 46.28 3.86
111 112 1.002990 TACGTCTCCGTCAGCTCCA 60.003 57.895 0.00 0.00 46.28 3.86
112 113 1.722677 CTACGTCTCCGTCAGCTCC 59.277 63.158 0.00 0.00 46.28 4.70
113 114 1.062845 GCTACGTCTCCGTCAGCTC 59.937 63.158 0.00 0.00 46.28 4.09
114 115 2.751913 CGCTACGTCTCCGTCAGCT 61.752 63.158 0.00 0.00 46.28 4.24
115 116 2.277373 CGCTACGTCTCCGTCAGC 60.277 66.667 0.00 0.00 46.28 4.26
116 117 0.109873 AAACGCTACGTCTCCGTCAG 60.110 55.000 8.22 0.00 46.28 3.51
117 118 0.110056 GAAACGCTACGTCTCCGTCA 60.110 55.000 8.22 0.00 46.28 4.35
118 119 1.124702 CGAAACGCTACGTCTCCGTC 61.125 60.000 8.22 0.00 46.28 4.79
120 121 1.124702 GTCGAAACGCTACGTCTCCG 61.125 60.000 0.00 0.00 39.99 4.63
121 122 0.110056 TGTCGAAACGCTACGTCTCC 60.110 55.000 0.00 0.00 39.99 3.71
122 123 1.248721 CTGTCGAAACGCTACGTCTC 58.751 55.000 0.00 0.00 39.99 3.36
123 124 0.109873 CCTGTCGAAACGCTACGTCT 60.110 55.000 0.00 0.00 39.99 4.18
124 125 1.069378 CCCTGTCGAAACGCTACGTC 61.069 60.000 0.00 0.00 39.99 4.34
125 126 1.080974 CCCTGTCGAAACGCTACGT 60.081 57.895 0.00 0.00 43.97 3.57
126 127 1.804326 CCCCTGTCGAAACGCTACG 60.804 63.158 0.00 0.00 0.00 3.51
127 128 0.527565 TACCCCTGTCGAAACGCTAC 59.472 55.000 0.00 0.00 0.00 3.58
128 129 1.135527 CATACCCCTGTCGAAACGCTA 59.864 52.381 0.00 0.00 0.00 4.26
129 130 0.108329 CATACCCCTGTCGAAACGCT 60.108 55.000 0.00 0.00 0.00 5.07
130 131 1.087771 CCATACCCCTGTCGAAACGC 61.088 60.000 0.00 0.00 0.00 4.84
131 132 1.087771 GCCATACCCCTGTCGAAACG 61.088 60.000 0.00 0.00 0.00 3.60
132 133 1.087771 CGCCATACCCCTGTCGAAAC 61.088 60.000 0.00 0.00 0.00 2.78
133 134 1.219664 CGCCATACCCCTGTCGAAA 59.780 57.895 0.00 0.00 0.00 3.46
134 135 1.985662 ACGCCATACCCCTGTCGAA 60.986 57.895 0.00 0.00 0.00 3.71
135 136 2.363276 ACGCCATACCCCTGTCGA 60.363 61.111 0.00 0.00 0.00 4.20
136 137 2.202878 CACGCCATACCCCTGTCG 60.203 66.667 0.00 0.00 0.00 4.35
137 138 1.153429 GTCACGCCATACCCCTGTC 60.153 63.158 0.00 0.00 0.00 3.51
138 139 1.899437 CTGTCACGCCATACCCCTGT 61.899 60.000 0.00 0.00 0.00 4.00
139 140 1.153369 CTGTCACGCCATACCCCTG 60.153 63.158 0.00 0.00 0.00 4.45
140 141 3.031417 GCTGTCACGCCATACCCCT 62.031 63.158 0.00 0.00 0.00 4.79
141 142 2.513897 GCTGTCACGCCATACCCC 60.514 66.667 0.00 0.00 0.00 4.95
142 143 2.890474 CGCTGTCACGCCATACCC 60.890 66.667 0.00 0.00 0.00 3.69
143 144 2.890474 CCGCTGTCACGCCATACC 60.890 66.667 0.00 0.00 0.00 2.73
144 145 2.890474 CCCGCTGTCACGCCATAC 60.890 66.667 0.00 0.00 0.00 2.39
145 146 4.155733 CCCCGCTGTCACGCCATA 62.156 66.667 0.00 0.00 0.00 2.74
159 160 4.351054 CACTGCTCCACCACCCCC 62.351 72.222 0.00 0.00 0.00 5.40
160 161 4.351054 CCACTGCTCCACCACCCC 62.351 72.222 0.00 0.00 0.00 4.95
162 163 3.790416 TTGCCACTGCTCCACCACC 62.790 63.158 0.00 0.00 38.71 4.61
163 164 1.391157 TTTTGCCACTGCTCCACCAC 61.391 55.000 0.00 0.00 38.71 4.16
164 165 1.076412 TTTTGCCACTGCTCCACCA 60.076 52.632 0.00 0.00 38.71 4.17
165 166 1.662044 CTTTTGCCACTGCTCCACC 59.338 57.895 0.00 0.00 38.71 4.61
166 167 1.006922 GCTTTTGCCACTGCTCCAC 60.007 57.895 0.00 0.00 40.15 4.02
167 168 1.042003 TTGCTTTTGCCACTGCTCCA 61.042 50.000 0.00 0.00 46.87 3.86
168 169 0.319297 CTTGCTTTTGCCACTGCTCC 60.319 55.000 0.00 0.00 46.87 4.70
169 170 0.670162 TCTTGCTTTTGCCACTGCTC 59.330 50.000 0.00 0.00 46.87 4.26
170 171 0.672342 CTCTTGCTTTTGCCACTGCT 59.328 50.000 0.00 0.00 46.87 4.24
171 172 0.670162 TCTCTTGCTTTTGCCACTGC 59.330 50.000 0.00 0.00 46.87 4.40
172 173 2.224606 TCTCTCTTGCTTTTGCCACTG 58.775 47.619 0.00 0.00 46.87 3.66
173 174 2.645838 TCTCTCTTGCTTTTGCCACT 57.354 45.000 0.00 0.00 46.87 4.00
174 175 3.316308 TCTTTCTCTCTTGCTTTTGCCAC 59.684 43.478 0.00 0.00 46.87 5.01
175 176 3.554934 TCTTTCTCTCTTGCTTTTGCCA 58.445 40.909 0.00 0.00 46.87 4.92
176 177 4.544651 CTTCTTTCTCTCTTGCTTTTGCC 58.455 43.478 0.00 0.00 46.87 4.52
178 179 5.297776 TGTCCTTCTTTCTCTCTTGCTTTTG 59.702 40.000 0.00 0.00 0.00 2.44
179 180 5.440610 TGTCCTTCTTTCTCTCTTGCTTTT 58.559 37.500 0.00 0.00 0.00 2.27
180 181 5.041191 TGTCCTTCTTTCTCTCTTGCTTT 57.959 39.130 0.00 0.00 0.00 3.51
181 182 4.696479 TGTCCTTCTTTCTCTCTTGCTT 57.304 40.909 0.00 0.00 0.00 3.91
182 183 4.696479 TTGTCCTTCTTTCTCTCTTGCT 57.304 40.909 0.00 0.00 0.00 3.91
183 184 5.757850 TTTTGTCCTTCTTTCTCTCTTGC 57.242 39.130 0.00 0.00 0.00 4.01
203 204 3.119137 GCGCTTCCATCCACCTTATTTTT 60.119 43.478 0.00 0.00 0.00 1.94
204 205 2.427095 GCGCTTCCATCCACCTTATTTT 59.573 45.455 0.00 0.00 0.00 1.82
205 206 2.024414 GCGCTTCCATCCACCTTATTT 58.976 47.619 0.00 0.00 0.00 1.40
206 207 1.680338 GCGCTTCCATCCACCTTATT 58.320 50.000 0.00 0.00 0.00 1.40
207 208 0.532862 CGCGCTTCCATCCACCTTAT 60.533 55.000 5.56 0.00 0.00 1.73
208 209 1.153449 CGCGCTTCCATCCACCTTA 60.153 57.895 5.56 0.00 0.00 2.69
209 210 2.436646 CGCGCTTCCATCCACCTT 60.437 61.111 5.56 0.00 0.00 3.50
210 211 3.376935 CTCGCGCTTCCATCCACCT 62.377 63.158 5.56 0.00 0.00 4.00
211 212 2.892425 CTCGCGCTTCCATCCACC 60.892 66.667 5.56 0.00 0.00 4.61
212 213 2.125512 ACTCGCGCTTCCATCCAC 60.126 61.111 5.56 0.00 0.00 4.02
213 214 2.184322 GACTCGCGCTTCCATCCA 59.816 61.111 5.56 0.00 0.00 3.41
214 215 2.586357 GGACTCGCGCTTCCATCC 60.586 66.667 17.99 1.26 0.00 3.51
215 216 2.956964 CGGACTCGCGCTTCCATC 60.957 66.667 21.32 4.98 0.00 3.51
216 217 4.514577 CCGGACTCGCGCTTCCAT 62.515 66.667 21.32 0.00 34.56 3.41
218 219 2.624437 ATTACCGGACTCGCGCTTCC 62.624 60.000 9.46 14.10 34.56 3.46
219 220 1.226888 ATTACCGGACTCGCGCTTC 60.227 57.895 9.46 0.00 34.56 3.86
220 221 1.518572 CATTACCGGACTCGCGCTT 60.519 57.895 9.46 0.00 34.56 4.68
221 222 2.104331 CATTACCGGACTCGCGCT 59.896 61.111 9.46 0.00 34.56 5.92
222 223 2.960129 CCATTACCGGACTCGCGC 60.960 66.667 9.46 0.00 34.56 6.86
223 224 0.738412 AAACCATTACCGGACTCGCG 60.738 55.000 9.46 0.00 34.56 5.87
224 225 1.129811 CAAAACCATTACCGGACTCGC 59.870 52.381 9.46 0.00 34.56 5.03
225 226 2.671396 CTCAAAACCATTACCGGACTCG 59.329 50.000 9.46 0.00 0.00 4.18
226 227 3.933332 CTCTCAAAACCATTACCGGACTC 59.067 47.826 9.46 0.00 0.00 3.36
227 228 3.307480 CCTCTCAAAACCATTACCGGACT 60.307 47.826 9.46 0.00 0.00 3.85
228 229 3.007635 CCTCTCAAAACCATTACCGGAC 58.992 50.000 9.46 0.00 0.00 4.79
229 230 2.026636 CCCTCTCAAAACCATTACCGGA 60.027 50.000 9.46 0.00 0.00 5.14
230 231 2.365582 CCCTCTCAAAACCATTACCGG 58.634 52.381 0.00 0.00 0.00 5.28
231 232 1.743394 GCCCTCTCAAAACCATTACCG 59.257 52.381 0.00 0.00 0.00 4.02
232 233 2.755103 CTGCCCTCTCAAAACCATTACC 59.245 50.000 0.00 0.00 0.00 2.85
233 234 2.755103 CCTGCCCTCTCAAAACCATTAC 59.245 50.000 0.00 0.00 0.00 1.89
234 235 2.647299 TCCTGCCCTCTCAAAACCATTA 59.353 45.455 0.00 0.00 0.00 1.90
235 236 1.428912 TCCTGCCCTCTCAAAACCATT 59.571 47.619 0.00 0.00 0.00 3.16
236 237 1.005215 CTCCTGCCCTCTCAAAACCAT 59.995 52.381 0.00 0.00 0.00 3.55
237 238 0.401738 CTCCTGCCCTCTCAAAACCA 59.598 55.000 0.00 0.00 0.00 3.67
238 239 0.402121 ACTCCTGCCCTCTCAAAACC 59.598 55.000 0.00 0.00 0.00 3.27
239 240 1.202818 ACACTCCTGCCCTCTCAAAAC 60.203 52.381 0.00 0.00 0.00 2.43
240 241 1.072331 GACACTCCTGCCCTCTCAAAA 59.928 52.381 0.00 0.00 0.00 2.44
241 242 0.687354 GACACTCCTGCCCTCTCAAA 59.313 55.000 0.00 0.00 0.00 2.69
242 243 1.536073 CGACACTCCTGCCCTCTCAA 61.536 60.000 0.00 0.00 0.00 3.02
243 244 1.979155 CGACACTCCTGCCCTCTCA 60.979 63.158 0.00 0.00 0.00 3.27
244 245 2.716017 CCGACACTCCTGCCCTCTC 61.716 68.421 0.00 0.00 0.00 3.20
245 246 2.681778 CCGACACTCCTGCCCTCT 60.682 66.667 0.00 0.00 0.00 3.69
246 247 2.680352 TCCGACACTCCTGCCCTC 60.680 66.667 0.00 0.00 0.00 4.30
247 248 2.681778 CTCCGACACTCCTGCCCT 60.682 66.667 0.00 0.00 0.00 5.19
248 249 3.775654 CCTCCGACACTCCTGCCC 61.776 72.222 0.00 0.00 0.00 5.36
249 250 4.459089 GCCTCCGACACTCCTGCC 62.459 72.222 0.00 0.00 0.00 4.85
250 251 4.803426 CGCCTCCGACACTCCTGC 62.803 72.222 0.00 0.00 36.29 4.85
251 252 2.044555 TACGCCTCCGACACTCCTG 61.045 63.158 0.00 0.00 38.29 3.86
252 253 2.045131 GTACGCCTCCGACACTCCT 61.045 63.158 0.00 0.00 38.29 3.69
253 254 2.488820 GTACGCCTCCGACACTCC 59.511 66.667 0.00 0.00 38.29 3.85
254 255 2.099831 CGTACGCCTCCGACACTC 59.900 66.667 0.52 0.00 38.29 3.51
255 256 2.670934 ACGTACGCCTCCGACACT 60.671 61.111 16.72 0.00 38.29 3.55
256 257 2.503375 CACGTACGCCTCCGACAC 60.503 66.667 16.72 0.00 38.29 3.67
257 258 3.740397 CCACGTACGCCTCCGACA 61.740 66.667 16.72 0.00 38.29 4.35
267 268 2.809601 CGGACAGCAGCCACGTAC 60.810 66.667 0.00 0.00 0.00 3.67
287 288 1.811359 ACGTGAGAGACTTAACCGGAG 59.189 52.381 9.46 0.00 0.00 4.63
291 292 4.618965 AGACAAACGTGAGAGACTTAACC 58.381 43.478 0.00 0.00 0.00 2.85
293 294 4.340097 TGGAGACAAACGTGAGAGACTTAA 59.660 41.667 0.00 0.00 37.44 1.85
294 295 3.887110 TGGAGACAAACGTGAGAGACTTA 59.113 43.478 0.00 0.00 37.44 2.24
296 297 2.307768 TGGAGACAAACGTGAGAGACT 58.692 47.619 0.00 0.00 37.44 3.24
331 332 1.880675 CGCCGACCAGTCTAGACATAT 59.119 52.381 24.44 8.94 0.00 1.78
338 339 2.184830 CGATCCGCCGACCAGTCTA 61.185 63.158 0.00 0.00 0.00 2.59
339 340 3.518998 CGATCCGCCGACCAGTCT 61.519 66.667 0.00 0.00 0.00 3.24
342 343 1.081376 GTATCGATCCGCCGACCAG 60.081 63.158 0.00 0.00 41.70 4.00
345 346 2.126965 CCGTATCGATCCGCCGAC 60.127 66.667 0.00 0.00 41.70 4.79
355 356 2.812499 CAGTGGGGGTCCGTATCG 59.188 66.667 0.00 0.00 35.24 2.92
370 371 0.664166 GAACACGGTTTGCCATGCAG 60.664 55.000 0.00 0.00 40.61 4.41
373 374 1.081509 CCGAACACGGTTTGCCATG 60.082 57.895 0.00 0.00 41.61 3.66
388 389 2.787567 TTCGCATCATACGGCCCGA 61.788 57.895 11.71 0.00 0.00 5.14
392 393 2.157668 CCATAAGTTCGCATCATACGGC 59.842 50.000 0.00 0.00 0.00 5.68
394 395 3.675225 CCTCCATAAGTTCGCATCATACG 59.325 47.826 0.00 0.00 0.00 3.06
395 396 4.449068 CACCTCCATAAGTTCGCATCATAC 59.551 45.833 0.00 0.00 0.00 2.39
398 399 2.419990 CCACCTCCATAAGTTCGCATCA 60.420 50.000 0.00 0.00 0.00 3.07
402 403 2.547826 GTACCACCTCCATAAGTTCGC 58.452 52.381 0.00 0.00 0.00 4.70
408 409 1.007479 ACCCTCGTACCACCTCCATAA 59.993 52.381 0.00 0.00 0.00 1.90
413 414 2.413142 CCGACCCTCGTACCACCTC 61.413 68.421 0.00 0.00 38.40 3.85
414 415 2.362120 CCGACCCTCGTACCACCT 60.362 66.667 0.00 0.00 38.40 4.00
453 454 0.388649 GGTGACGTAGCACTCCTGTG 60.389 60.000 7.26 0.00 46.37 3.66
454 455 0.539901 AGGTGACGTAGCACTCCTGT 60.540 55.000 7.26 0.00 38.78 4.00
455 456 0.109086 CAGGTGACGTAGCACTCCTG 60.109 60.000 7.26 7.77 40.27 3.86
464 466 1.404035 CACGATGGATCAGGTGACGTA 59.596 52.381 0.00 0.00 0.00 3.57
535 537 0.035152 TGTTCATGCTAGTGGGCAGG 60.035 55.000 0.00 0.00 45.75 4.85
537 539 0.692476 ACTGTTCATGCTAGTGGGCA 59.308 50.000 0.00 0.00 46.63 5.36
538 540 1.373570 GACTGTTCATGCTAGTGGGC 58.626 55.000 1.81 0.00 0.00 5.36
549 551 2.732016 CGGTGACCGGACTGTTCA 59.268 61.111 17.80 0.00 44.15 3.18
601 603 0.815615 GGCAGGTATTGGGAGCTTCG 60.816 60.000 0.00 0.00 0.00 3.79
606 608 2.510906 CCGGGCAGGTATTGGGAG 59.489 66.667 0.00 0.00 34.51 4.30
607 609 3.804329 GCCGGGCAGGTATTGGGA 61.804 66.667 15.62 0.00 43.70 4.37
610 612 4.169696 TCGGCCGGGCAGGTATTG 62.170 66.667 29.19 9.77 43.70 1.90
611 613 3.861797 CTCGGCCGGGCAGGTATT 61.862 66.667 29.19 0.00 43.70 1.89
634 636 2.610859 ATATTTCACACGCGCGCACG 62.611 55.000 32.58 23.11 44.07 5.34
635 637 0.919427 GATATTTCACACGCGCGCAC 60.919 55.000 32.58 2.05 0.00 5.34
636 638 1.346879 GATATTTCACACGCGCGCA 59.653 52.632 32.58 10.12 0.00 6.09
637 639 1.714366 CGATATTTCACACGCGCGC 60.714 57.895 32.58 23.91 0.00 6.86
640 642 0.315059 GCCACGATATTTCACACGCG 60.315 55.000 3.53 3.53 0.00 6.01
735 737 3.832490 CGGGGAGAAAAGAAAGGGAAATT 59.168 43.478 0.00 0.00 0.00 1.82
773 775 4.486503 GCAGAGGCAGAGGCAGGG 62.487 72.222 0.00 0.00 43.71 4.45
822 824 4.127171 CTGCCGCTGTTTATATAGTGGTT 58.873 43.478 10.38 0.00 43.08 3.67
826 828 2.550208 GGGCTGCCGCTGTTTATATAGT 60.550 50.000 13.40 0.00 36.09 2.12
841 843 4.767255 CGGACAGTGGAGGGCTGC 62.767 72.222 0.00 0.00 37.47 5.25
958 974 0.036671 GTGTCCTGAAACGGGTAGGG 60.037 60.000 0.00 0.00 32.39 3.53
982 998 3.785499 GTCCTCCGCGGCGAAAAC 61.785 66.667 25.92 9.88 0.00 2.43
983 999 3.599285 ATGTCCTCCGCGGCGAAAA 62.599 57.895 25.92 10.43 0.00 2.29
984 1000 4.077184 ATGTCCTCCGCGGCGAAA 62.077 61.111 25.92 14.12 0.00 3.46
2807 2886 2.109463 CCGTACGACATCATCACGAAG 58.891 52.381 18.76 0.00 34.66 3.79
2808 2887 1.469703 ACCGTACGACATCATCACGAA 59.530 47.619 18.76 0.00 34.66 3.85
2810 2889 1.904144 AACCGTACGACATCATCACG 58.096 50.000 18.76 0.00 0.00 4.35
2811 2890 3.247442 TGAAACCGTACGACATCATCAC 58.753 45.455 18.76 0.00 0.00 3.06
2812 2891 3.579335 TGAAACCGTACGACATCATCA 57.421 42.857 18.76 9.16 0.00 3.07
2813 2892 4.435121 GGTTTGAAACCGTACGACATCATC 60.435 45.833 18.76 12.19 42.62 2.92
2814 2893 3.434299 GGTTTGAAACCGTACGACATCAT 59.566 43.478 18.76 0.00 42.62 2.45
2864 2943 5.818857 ACACTTTTTACCAACACACGTAGAT 59.181 36.000 0.00 0.00 0.00 1.98
2982 3070 4.338400 CAGACTCGTTCCATCCTATACACA 59.662 45.833 0.00 0.00 0.00 3.72
2983 3071 4.338682 ACAGACTCGTTCCATCCTATACAC 59.661 45.833 0.00 0.00 0.00 2.90
2995 3083 4.559251 CACTGCACTAATACAGACTCGTTC 59.441 45.833 0.00 0.00 37.35 3.95
3091 3181 7.692291 CACATTTCCACACTCGATATTTACAAC 59.308 37.037 0.00 0.00 0.00 3.32
3092 3182 7.604545 TCACATTTCCACACTCGATATTTACAA 59.395 33.333 0.00 0.00 0.00 2.41
3103 3193 5.474876 AGATTTCCTTCACATTTCCACACTC 59.525 40.000 0.00 0.00 0.00 3.51
3141 3256 7.668492 AGACTTTCGGTTAAGTTCTTACAGAT 58.332 34.615 0.00 0.00 38.43 2.90
3158 3273 7.808856 GGGCAGATTATACTTACTAGACTTTCG 59.191 40.741 0.00 0.00 0.00 3.46
3159 3274 8.089597 GGGGCAGATTATACTTACTAGACTTTC 58.910 40.741 0.00 0.00 0.00 2.62
3162 3277 6.017830 GGGGGCAGATTATACTTACTAGACT 58.982 44.000 0.00 0.00 0.00 3.24
3164 3279 6.228977 AGGGGGCAGATTATACTTACTAGA 57.771 41.667 0.00 0.00 0.00 2.43
3166 3281 6.383147 GCATAGGGGGCAGATTATACTTACTA 59.617 42.308 0.00 0.00 0.00 1.82
3167 3282 5.189934 GCATAGGGGGCAGATTATACTTACT 59.810 44.000 0.00 0.00 0.00 2.24
3169 3284 4.473559 GGCATAGGGGGCAGATTATACTTA 59.526 45.833 0.00 0.00 0.00 2.24
3171 3286 2.846827 GGCATAGGGGGCAGATTATACT 59.153 50.000 0.00 0.00 0.00 2.12
3176 3589 1.645402 AACGGCATAGGGGGCAGATT 61.645 55.000 0.00 0.00 0.00 2.40
3188 3601 2.943033 GTCAAATGGTAGCTAACGGCAT 59.057 45.455 3.91 0.00 44.79 4.40
3192 3605 4.435121 GGTTTCGTCAAATGGTAGCTAACG 60.435 45.833 3.91 4.94 0.00 3.18
3196 3609 3.335579 GAGGTTTCGTCAAATGGTAGCT 58.664 45.455 0.00 0.00 0.00 3.32
3198 3611 3.991605 CGAGGTTTCGTCAAATGGTAG 57.008 47.619 0.00 0.00 41.84 3.18
3214 3627 0.955919 GCTTCCCACCTTTGACGAGG 60.956 60.000 0.00 0.00 42.75 4.63
3217 3630 0.955919 GGAGCTTCCCACCTTTGACG 60.956 60.000 0.00 0.00 0.00 4.35
3218 3631 2.948386 GGAGCTTCCCACCTTTGAC 58.052 57.895 0.00 0.00 0.00 3.18
3261 3674 4.640647 GGTTTCCTTTATTAGCTGGACCAG 59.359 45.833 17.83 17.83 34.12 4.00
3262 3675 4.595986 GGTTTCCTTTATTAGCTGGACCA 58.404 43.478 0.00 0.00 0.00 4.02
3263 3676 3.626217 CGGTTTCCTTTATTAGCTGGACC 59.374 47.826 0.00 0.00 0.00 4.46
3264 3677 3.626217 CCGGTTTCCTTTATTAGCTGGAC 59.374 47.826 0.00 0.00 0.00 4.02
3265 3678 3.520317 TCCGGTTTCCTTTATTAGCTGGA 59.480 43.478 0.00 0.00 0.00 3.86
3266 3679 3.626217 GTCCGGTTTCCTTTATTAGCTGG 59.374 47.826 0.00 0.00 0.00 4.85
3267 3680 3.308866 CGTCCGGTTTCCTTTATTAGCTG 59.691 47.826 0.00 0.00 0.00 4.24
3268 3681 3.196254 TCGTCCGGTTTCCTTTATTAGCT 59.804 43.478 0.00 0.00 0.00 3.32
3269 3682 3.524541 TCGTCCGGTTTCCTTTATTAGC 58.475 45.455 0.00 0.00 0.00 3.09
3270 3683 6.484818 TTTTCGTCCGGTTTCCTTTATTAG 57.515 37.500 0.00 0.00 0.00 1.73
3271 3684 6.874288 TTTTTCGTCCGGTTTCCTTTATTA 57.126 33.333 0.00 0.00 0.00 0.98
3272 3685 5.771153 TTTTTCGTCCGGTTTCCTTTATT 57.229 34.783 0.00 0.00 0.00 1.40
3297 3710 6.053005 ACCTTGATTAACCGTACCATGTATG 58.947 40.000 0.00 0.00 0.00 2.39
3298 3711 6.243216 ACCTTGATTAACCGTACCATGTAT 57.757 37.500 0.00 0.00 0.00 2.29
3299 3712 5.680594 ACCTTGATTAACCGTACCATGTA 57.319 39.130 0.00 0.00 0.00 2.29
3300 3713 4.563140 ACCTTGATTAACCGTACCATGT 57.437 40.909 0.00 0.00 0.00 3.21
3301 3714 6.183360 GGTTTACCTTGATTAACCGTACCATG 60.183 42.308 0.00 0.00 31.64 3.66
3302 3715 5.882000 GGTTTACCTTGATTAACCGTACCAT 59.118 40.000 0.00 0.00 31.64 3.55
3303 3716 5.244755 GGTTTACCTTGATTAACCGTACCA 58.755 41.667 0.00 0.00 31.64 3.25
3304 3717 5.801350 GGTTTACCTTGATTAACCGTACC 57.199 43.478 0.00 0.00 31.64 3.34
3309 3722 3.083293 TGCCGGTTTACCTTGATTAACC 58.917 45.455 1.90 0.00 37.31 2.85
3310 3723 4.769859 TTGCCGGTTTACCTTGATTAAC 57.230 40.909 1.90 0.00 0.00 2.01
3311 3724 5.048573 GTCTTTGCCGGTTTACCTTGATTAA 60.049 40.000 1.90 0.00 0.00 1.40
3312 3725 4.456566 GTCTTTGCCGGTTTACCTTGATTA 59.543 41.667 1.90 0.00 0.00 1.75
3313 3726 3.254903 GTCTTTGCCGGTTTACCTTGATT 59.745 43.478 1.90 0.00 0.00 2.57
3314 3727 2.817844 GTCTTTGCCGGTTTACCTTGAT 59.182 45.455 1.90 0.00 0.00 2.57
3315 3728 2.223745 GTCTTTGCCGGTTTACCTTGA 58.776 47.619 1.90 0.00 0.00 3.02
3316 3729 1.268625 GGTCTTTGCCGGTTTACCTTG 59.731 52.381 1.90 0.00 0.00 3.61
3317 3730 1.133730 TGGTCTTTGCCGGTTTACCTT 60.134 47.619 1.90 0.00 0.00 3.50
3318 3731 0.475044 TGGTCTTTGCCGGTTTACCT 59.525 50.000 1.90 0.00 0.00 3.08
3319 3732 0.594602 GTGGTCTTTGCCGGTTTACC 59.405 55.000 1.90 4.98 0.00 2.85
3320 3733 1.002142 GTGTGGTCTTTGCCGGTTTAC 60.002 52.381 1.90 0.00 0.00 2.01
3321 3734 1.310904 GTGTGGTCTTTGCCGGTTTA 58.689 50.000 1.90 0.00 0.00 2.01
3322 3735 0.681564 TGTGTGGTCTTTGCCGGTTT 60.682 50.000 1.90 0.00 0.00 3.27
3323 3736 1.077357 TGTGTGGTCTTTGCCGGTT 60.077 52.632 1.90 0.00 0.00 4.44
3324 3737 1.822186 GTGTGTGGTCTTTGCCGGT 60.822 57.895 1.90 0.00 0.00 5.28
3325 3738 1.101049 AAGTGTGTGGTCTTTGCCGG 61.101 55.000 0.00 0.00 0.00 6.13
3326 3739 1.531149 CTAAGTGTGTGGTCTTTGCCG 59.469 52.381 0.00 0.00 0.00 5.69
3327 3740 1.266989 GCTAAGTGTGTGGTCTTTGCC 59.733 52.381 0.00 0.00 36.80 4.52
3328 3741 2.222027 AGCTAAGTGTGTGGTCTTTGC 58.778 47.619 0.00 0.00 40.59 3.68
3329 3742 3.251004 GGAAGCTAAGTGTGTGGTCTTTG 59.749 47.826 0.00 0.00 0.00 2.77
3330 3743 3.118038 TGGAAGCTAAGTGTGTGGTCTTT 60.118 43.478 0.00 0.00 0.00 2.52
3331 3744 2.438021 TGGAAGCTAAGTGTGTGGTCTT 59.562 45.455 0.00 0.00 0.00 3.01
3332 3745 2.047061 TGGAAGCTAAGTGTGTGGTCT 58.953 47.619 0.00 0.00 0.00 3.85
3333 3746 2.543777 TGGAAGCTAAGTGTGTGGTC 57.456 50.000 0.00 0.00 0.00 4.02
3334 3747 3.508845 AATGGAAGCTAAGTGTGTGGT 57.491 42.857 0.00 0.00 0.00 4.16
3335 3748 3.612479 GCAAATGGAAGCTAAGTGTGTGG 60.612 47.826 0.00 0.00 0.00 4.17
3336 3749 3.568538 GCAAATGGAAGCTAAGTGTGTG 58.431 45.455 0.00 0.00 0.00 3.82
3337 3750 2.226437 CGCAAATGGAAGCTAAGTGTGT 59.774 45.455 0.00 0.00 0.00 3.72
3338 3751 2.226437 ACGCAAATGGAAGCTAAGTGTG 59.774 45.455 0.00 0.00 0.00 3.82
3339 3752 2.226437 CACGCAAATGGAAGCTAAGTGT 59.774 45.455 0.00 0.00 0.00 3.55
3340 3753 2.226437 ACACGCAAATGGAAGCTAAGTG 59.774 45.455 0.00 0.00 0.00 3.16
3341 3754 2.504367 ACACGCAAATGGAAGCTAAGT 58.496 42.857 0.00 0.00 0.00 2.24
3342 3755 4.678509 TTACACGCAAATGGAAGCTAAG 57.321 40.909 0.00 0.00 0.00 2.18
3371 3784 6.071391 CCATTTTAATAAGACTTGTGTGGCCT 60.071 38.462 3.32 0.00 0.00 5.19
3377 3790 9.573133 GTTGATCCCATTTTAATAAGACTTGTG 57.427 33.333 0.00 0.00 0.00 3.33
3397 3810 3.380637 TCAGTAGGAGCGGTTAGTTGATC 59.619 47.826 0.00 0.00 0.00 2.92
3414 3827 4.138290 TCTTTGGAAAATGGCGTTCAGTA 58.862 39.130 0.00 0.00 0.00 2.74
3433 3846 8.140112 ACAAAAGAGGTATCACTATCACTCTT 57.860 34.615 0.00 0.00 44.51 2.85
3434 3847 7.726033 ACAAAAGAGGTATCACTATCACTCT 57.274 36.000 0.00 0.00 36.92 3.24
3435 3848 8.779354 AAACAAAAGAGGTATCACTATCACTC 57.221 34.615 0.00 0.00 0.00 3.51
3436 3849 9.574516 AAAAACAAAAGAGGTATCACTATCACT 57.425 29.630 0.00 0.00 0.00 3.41
3437 3850 9.612620 CAAAAACAAAAGAGGTATCACTATCAC 57.387 33.333 0.00 0.00 0.00 3.06
3438 3851 8.296713 GCAAAAACAAAAGAGGTATCACTATCA 58.703 33.333 0.00 0.00 0.00 2.15
3439 3852 7.481798 CGCAAAAACAAAAGAGGTATCACTATC 59.518 37.037 0.00 0.00 0.00 2.08
3440 3853 7.305474 CGCAAAAACAAAAGAGGTATCACTAT 58.695 34.615 0.00 0.00 0.00 2.12
3441 3854 6.293735 CCGCAAAAACAAAAGAGGTATCACTA 60.294 38.462 0.00 0.00 0.00 2.74
3442 3855 5.507315 CCGCAAAAACAAAAGAGGTATCACT 60.507 40.000 0.00 0.00 0.00 3.41
3443 3856 4.679654 CCGCAAAAACAAAAGAGGTATCAC 59.320 41.667 0.00 0.00 0.00 3.06
3444 3857 4.580995 TCCGCAAAAACAAAAGAGGTATCA 59.419 37.500 0.00 0.00 0.00 2.15
3445 3858 5.048991 TCTCCGCAAAAACAAAAGAGGTATC 60.049 40.000 0.00 0.00 0.00 2.24
3446 3859 4.825085 TCTCCGCAAAAACAAAAGAGGTAT 59.175 37.500 0.00 0.00 0.00 2.73
3447 3860 4.200874 TCTCCGCAAAAACAAAAGAGGTA 58.799 39.130 0.00 0.00 0.00 3.08
3448 3861 3.020984 TCTCCGCAAAAACAAAAGAGGT 58.979 40.909 0.00 0.00 0.00 3.85
3449 3862 3.708563 TCTCCGCAAAAACAAAAGAGG 57.291 42.857 0.00 0.00 0.00 3.69
3450 3863 4.920376 TCTTCTCCGCAAAAACAAAAGAG 58.080 39.130 0.00 0.00 0.00 2.85
3451 3864 4.398044 ACTCTTCTCCGCAAAAACAAAAGA 59.602 37.500 0.00 0.00 0.00 2.52
3452 3865 4.500477 CACTCTTCTCCGCAAAAACAAAAG 59.500 41.667 0.00 0.00 0.00 2.27
3453 3866 4.156922 TCACTCTTCTCCGCAAAAACAAAA 59.843 37.500 0.00 0.00 0.00 2.44
3454 3867 3.692101 TCACTCTTCTCCGCAAAAACAAA 59.308 39.130 0.00 0.00 0.00 2.83
3455 3868 3.275143 TCACTCTTCTCCGCAAAAACAA 58.725 40.909 0.00 0.00 0.00 2.83
3456 3869 2.912771 TCACTCTTCTCCGCAAAAACA 58.087 42.857 0.00 0.00 0.00 2.83
3457 3870 4.691216 ACTATCACTCTTCTCCGCAAAAAC 59.309 41.667 0.00 0.00 0.00 2.43
3458 3871 4.690748 CACTATCACTCTTCTCCGCAAAAA 59.309 41.667 0.00 0.00 0.00 1.94
3459 3872 4.021456 TCACTATCACTCTTCTCCGCAAAA 60.021 41.667 0.00 0.00 0.00 2.44
3460 3873 3.509967 TCACTATCACTCTTCTCCGCAAA 59.490 43.478 0.00 0.00 0.00 3.68
3461 3874 3.089284 TCACTATCACTCTTCTCCGCAA 58.911 45.455 0.00 0.00 0.00 4.85
3462 3875 2.723273 TCACTATCACTCTTCTCCGCA 58.277 47.619 0.00 0.00 0.00 5.69
3463 3876 4.517453 AGTATCACTATCACTCTTCTCCGC 59.483 45.833 0.00 0.00 0.00 5.54
3464 3877 6.932400 AGTAGTATCACTATCACTCTTCTCCG 59.068 42.308 0.00 0.00 32.65 4.63
3465 3878 7.117236 CGAGTAGTATCACTATCACTCTTCTCC 59.883 44.444 6.29 0.00 32.65 3.71
3466 3879 7.359765 GCGAGTAGTATCACTATCACTCTTCTC 60.360 44.444 0.00 0.00 32.65 2.87
3467 3880 6.425721 GCGAGTAGTATCACTATCACTCTTCT 59.574 42.308 0.00 0.00 32.65 2.85
3468 3881 6.347888 GGCGAGTAGTATCACTATCACTCTTC 60.348 46.154 0.00 0.47 32.65 2.87
3490 3903 2.874701 CAGGAGATGGTAATTTCTGGCG 59.125 50.000 0.00 0.00 0.00 5.69
3503 3916 0.179116 CCGTGTGAGAGCAGGAGATG 60.179 60.000 0.00 0.00 0.00 2.90
3511 3924 0.666577 AGCGTAAACCGTGTGAGAGC 60.667 55.000 0.00 0.00 39.32 4.09
3541 3954 3.491619 CGAATATCCTGGTGTCCTCTGTG 60.492 52.174 0.00 0.00 0.00 3.66
3611 4116 2.986979 TACAGCGCGTCACCCTCA 60.987 61.111 8.43 0.00 0.00 3.86
3614 4119 3.902162 TTCGTACAGCGCGTCACCC 62.902 63.158 8.43 0.00 41.07 4.61
3616 4121 1.662845 GAGTTCGTACAGCGCGTCAC 61.663 60.000 8.43 0.00 41.07 3.67
3617 4122 1.441515 GAGTTCGTACAGCGCGTCA 60.442 57.895 8.43 0.00 41.07 4.35
3618 4123 2.486322 CGAGTTCGTACAGCGCGTC 61.486 63.158 8.43 0.00 41.07 5.19
3635 4140 7.166473 GGTTGAGCAAGCAAATAGATTTAATCG 59.834 37.037 7.47 0.00 38.57 3.34
3639 4144 6.832520 TGGTTGAGCAAGCAAATAGATTTA 57.167 33.333 12.17 0.00 44.63 1.40
3640 4145 5.726980 TGGTTGAGCAAGCAAATAGATTT 57.273 34.783 12.17 0.00 44.63 2.17
3658 4163 0.898789 ACCGGACACGAGAGATGGTT 60.899 55.000 9.46 0.00 44.60 3.67
3659 4164 0.898789 AACCGGACACGAGAGATGGT 60.899 55.000 9.46 0.00 44.60 3.55
3668 4173 2.184167 AAACTGCCAACCGGACACG 61.184 57.895 9.46 0.00 40.55 4.49
3673 4178 1.540267 TTATCCAAACTGCCAACCGG 58.460 50.000 0.00 0.00 0.00 5.28
3674 4179 3.254657 TCTTTTATCCAAACTGCCAACCG 59.745 43.478 0.00 0.00 0.00 4.44
3675 4180 4.522789 TCTCTTTTATCCAAACTGCCAACC 59.477 41.667 0.00 0.00 0.00 3.77
3676 4181 5.703876 CTCTCTTTTATCCAAACTGCCAAC 58.296 41.667 0.00 0.00 0.00 3.77
3677 4182 4.218417 GCTCTCTTTTATCCAAACTGCCAA 59.782 41.667 0.00 0.00 0.00 4.52
3678 4183 3.758554 GCTCTCTTTTATCCAAACTGCCA 59.241 43.478 0.00 0.00 0.00 4.92
3679 4184 3.181506 CGCTCTCTTTTATCCAAACTGCC 60.182 47.826 0.00 0.00 0.00 4.85
3680 4185 3.684788 TCGCTCTCTTTTATCCAAACTGC 59.315 43.478 0.00 0.00 0.00 4.40
3681 4186 4.093556 GGTCGCTCTCTTTTATCCAAACTG 59.906 45.833 0.00 0.00 0.00 3.16
3682 4187 4.254492 GGTCGCTCTCTTTTATCCAAACT 58.746 43.478 0.00 0.00 0.00 2.66
3683 4188 4.000988 TGGTCGCTCTCTTTTATCCAAAC 58.999 43.478 0.00 0.00 0.00 2.93
3684 4189 4.000988 GTGGTCGCTCTCTTTTATCCAAA 58.999 43.478 0.00 0.00 0.00 3.28
3685 4190 3.596214 GTGGTCGCTCTCTTTTATCCAA 58.404 45.455 0.00 0.00 0.00 3.53
3686 4191 2.416836 CGTGGTCGCTCTCTTTTATCCA 60.417 50.000 0.00 0.00 0.00 3.41
3687 4192 2.159282 TCGTGGTCGCTCTCTTTTATCC 60.159 50.000 0.00 0.00 36.96 2.59
3688 4193 2.853003 GTCGTGGTCGCTCTCTTTTATC 59.147 50.000 0.00 0.00 36.96 1.75
3689 4194 2.416972 GGTCGTGGTCGCTCTCTTTTAT 60.417 50.000 0.00 0.00 36.96 1.40
3690 4195 1.068055 GGTCGTGGTCGCTCTCTTTTA 60.068 52.381 0.00 0.00 36.96 1.52
3691 4196 0.319641 GGTCGTGGTCGCTCTCTTTT 60.320 55.000 0.00 0.00 36.96 2.27
3692 4197 1.289380 GGTCGTGGTCGCTCTCTTT 59.711 57.895 0.00 0.00 36.96 2.52
3693 4198 2.637383 GGGTCGTGGTCGCTCTCTT 61.637 63.158 0.00 0.00 36.96 2.85
3694 4199 3.063084 GGGTCGTGGTCGCTCTCT 61.063 66.667 0.00 0.00 36.96 3.10
3695 4200 4.131088 GGGGTCGTGGTCGCTCTC 62.131 72.222 0.00 0.00 36.96 3.20
3696 4201 4.988716 TGGGGTCGTGGTCGCTCT 62.989 66.667 0.00 0.00 36.96 4.09
3697 4202 3.934391 CTTGGGGTCGTGGTCGCTC 62.934 68.421 0.00 0.00 36.96 5.03
3698 4203 4.003788 CTTGGGGTCGTGGTCGCT 62.004 66.667 0.00 0.00 36.96 4.93
3700 4205 4.308458 TGCTTGGGGTCGTGGTCG 62.308 66.667 0.00 0.00 38.55 4.79
3701 4206 2.358737 CTGCTTGGGGTCGTGGTC 60.359 66.667 0.00 0.00 0.00 4.02
3702 4207 4.643387 GCTGCTTGGGGTCGTGGT 62.643 66.667 0.00 0.00 0.00 4.16
3703 4208 4.335647 AGCTGCTTGGGGTCGTGG 62.336 66.667 0.00 0.00 0.00 4.94
3704 4209 2.743928 GAGCTGCTTGGGGTCGTG 60.744 66.667 2.53 0.00 0.00 4.35
3705 4210 2.596851 ATGAGCTGCTTGGGGTCGT 61.597 57.895 2.53 0.00 34.38 4.34
3706 4211 2.110967 CATGAGCTGCTTGGGGTCG 61.111 63.158 2.53 0.00 34.38 4.79
3707 4212 1.001641 ACATGAGCTGCTTGGGGTC 60.002 57.895 2.53 0.00 0.00 4.46
3708 4213 1.303888 CACATGAGCTGCTTGGGGT 60.304 57.895 2.53 0.00 0.00 4.95
3709 4214 2.707849 GCACATGAGCTGCTTGGGG 61.708 63.158 7.97 0.00 0.00 4.96
3710 4215 2.882876 GCACATGAGCTGCTTGGG 59.117 61.111 7.97 0.60 0.00 4.12
3711 4216 2.483745 CGCACATGAGCTGCTTGG 59.516 61.111 13.36 0.00 32.03 3.61
3712 4217 2.483745 CCGCACATGAGCTGCTTG 59.516 61.111 13.36 1.02 32.03 4.01
3713 4218 3.437795 GCCGCACATGAGCTGCTT 61.438 61.111 20.90 0.00 40.89 3.91
3716 4221 4.156622 CACGCCGCACATGAGCTG 62.157 66.667 13.36 7.84 0.00 4.24
3717 4222 4.687215 ACACGCCGCACATGAGCT 62.687 61.111 13.36 0.00 0.00 4.09
3718 4223 4.450122 CACACGCCGCACATGAGC 62.450 66.667 4.89 4.89 0.00 4.26
3719 4224 2.733671 CTCACACGCCGCACATGAG 61.734 63.158 0.00 0.00 0.00 2.90
3720 4225 2.738139 CTCACACGCCGCACATGA 60.738 61.111 0.00 0.00 0.00 3.07
3721 4226 4.450122 GCTCACACGCCGCACATG 62.450 66.667 0.00 0.00 0.00 3.21
3722 4227 4.687215 AGCTCACACGCCGCACAT 62.687 61.111 0.00 0.00 0.00 3.21
3727 4232 3.114616 CTTGGAGCTCACACGCCG 61.115 66.667 17.19 0.00 31.10 6.46
3728 4233 2.029844 GACTTGGAGCTCACACGCC 61.030 63.158 17.19 0.00 0.00 5.68
3729 4234 0.880278 TTGACTTGGAGCTCACACGC 60.880 55.000 17.19 2.08 0.00 5.34
3730 4235 1.143305 CTTGACTTGGAGCTCACACG 58.857 55.000 17.19 11.07 0.00 4.49
3731 4236 0.871057 GCTTGACTTGGAGCTCACAC 59.129 55.000 17.19 0.00 36.01 3.82
3732 4237 0.469494 TGCTTGACTTGGAGCTCACA 59.531 50.000 17.19 8.45 39.60 3.58
3733 4238 3.312404 TGCTTGACTTGGAGCTCAC 57.688 52.632 17.19 5.63 39.60 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.