Multiple sequence alignment - TraesCS4D01G319600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G319600 chr4D 100.000 2264 0 0 1 2264 483180791 483178528 0.000000e+00 4181.0
1 TraesCS4D01G319600 chr4D 91.829 257 11 8 1 251 29643167 29642915 1.290000e-92 350.0
2 TraesCS4D01G319600 chr4B 89.066 1317 78 37 361 1640 613905100 613906387 0.000000e+00 1574.0
3 TraesCS4D01G319600 chr4B 84.766 256 30 9 1 251 10409291 10409040 4.830000e-62 248.0
4 TraesCS4D01G319600 chr4B 91.057 123 10 1 2075 2196 613906985 613907107 5.000000e-37 165.0
5 TraesCS4D01G319600 chr5A 86.847 996 63 35 748 1725 663376404 663375459 0.000000e+00 1051.0
6 TraesCS4D01G319600 chr5A 93.075 361 19 3 283 639 663377133 663376775 7.160000e-145 523.0
7 TraesCS4D01G319600 chr5A 86.923 260 19 9 1 248 25879210 25879466 6.160000e-71 278.0
8 TraesCS4D01G319600 chr5D 92.885 253 15 2 1 250 37204084 37203832 4.600000e-97 364.0
9 TraesCS4D01G319600 chr1D 91.373 255 16 4 1 251 234392482 234392734 5.990000e-91 344.0
10 TraesCS4D01G319600 chr1D 86.154 260 24 10 1 251 474370145 474369889 1.030000e-68 270.0
11 TraesCS4D01G319600 chr2D 90.909 253 15 7 1 248 527552243 527552492 1.300000e-87 333.0
12 TraesCS4D01G319600 chr2D 88.123 261 18 9 1 251 487929348 487929605 4.730000e-77 298.0
13 TraesCS4D01G319600 chr6D 87.302 252 27 5 4 251 450548220 450547970 1.320000e-72 283.0
14 TraesCS4D01G319600 chr3B 89.831 59 4 2 1698 1754 7131726 7131668 8.670000e-10 75.0
15 TraesCS4D01G319600 chr3B 100.000 33 0 0 1698 1730 7175659 7175627 6.750000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G319600 chr4D 483178528 483180791 2263 True 4181.0 4181 100.0000 1 2264 1 chr4D.!!$R2 2263
1 TraesCS4D01G319600 chr4B 613905100 613907107 2007 False 869.5 1574 90.0615 361 2196 2 chr4B.!!$F1 1835
2 TraesCS4D01G319600 chr5A 663375459 663377133 1674 True 787.0 1051 89.9610 283 1725 2 chr5A.!!$R1 1442

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
415 424 0.034337 ACGGCGGCGGATATACAAAT 59.966 50.0 35.05 7.19 0.0 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2074 2707 0.038599 AGACATGGCATTGGCACAGA 59.961 50.0 15.84 0.0 41.84 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.283751 TGTTAATTATGGAACTGGGCCG 58.716 45.455 0.00 0.00 0.00 6.13
24 25 3.284617 GTTAATTATGGAACTGGGCCGT 58.715 45.455 0.00 0.00 0.00 5.68
25 26 2.525105 AATTATGGAACTGGGCCGTT 57.475 45.000 12.43 12.43 0.00 4.44
26 27 2.525105 ATTATGGAACTGGGCCGTTT 57.475 45.000 13.50 2.34 0.00 3.60
27 28 3.655615 ATTATGGAACTGGGCCGTTTA 57.344 42.857 13.50 7.92 0.00 2.01
28 29 3.436577 TTATGGAACTGGGCCGTTTAA 57.563 42.857 13.50 7.25 0.00 1.52
29 30 1.834188 ATGGAACTGGGCCGTTTAAG 58.166 50.000 13.50 1.02 0.00 1.85
30 31 0.475044 TGGAACTGGGCCGTTTAAGT 59.525 50.000 13.50 1.66 0.00 2.24
31 32 0.879090 GGAACTGGGCCGTTTAAGTG 59.121 55.000 13.50 0.00 0.00 3.16
32 33 0.879090 GAACTGGGCCGTTTAAGTGG 59.121 55.000 13.50 0.00 0.00 4.00
33 34 0.475044 AACTGGGCCGTTTAAGTGGA 59.525 50.000 0.00 0.00 0.00 4.02
34 35 0.696501 ACTGGGCCGTTTAAGTGGAT 59.303 50.000 0.00 0.00 0.00 3.41
35 36 1.074889 ACTGGGCCGTTTAAGTGGATT 59.925 47.619 0.00 0.00 0.00 3.01
36 37 2.306512 ACTGGGCCGTTTAAGTGGATTA 59.693 45.455 0.00 0.00 0.00 1.75
37 38 2.681344 CTGGGCCGTTTAAGTGGATTAC 59.319 50.000 0.00 0.00 0.00 1.89
38 39 1.667212 GGGCCGTTTAAGTGGATTACG 59.333 52.381 0.00 0.00 0.00 3.18
44 45 5.199424 CGTTTAAGTGGATTACGGAACTG 57.801 43.478 0.00 0.00 0.00 3.16
45 46 4.092383 CGTTTAAGTGGATTACGGAACTGG 59.908 45.833 0.00 0.00 0.00 4.00
46 47 2.781681 AAGTGGATTACGGAACTGGG 57.218 50.000 0.00 0.00 0.00 4.45
47 48 0.252197 AGTGGATTACGGAACTGGGC 59.748 55.000 0.00 0.00 0.00 5.36
48 49 0.746923 GTGGATTACGGAACTGGGCC 60.747 60.000 0.00 0.00 0.00 5.80
54 55 2.642700 CGGAACTGGGCCGTTTTG 59.357 61.111 13.50 7.07 43.66 2.44
55 56 2.190841 CGGAACTGGGCCGTTTTGT 61.191 57.895 13.50 0.00 43.66 2.83
56 57 1.362355 GGAACTGGGCCGTTTTGTG 59.638 57.895 13.50 0.00 0.00 3.33
57 58 1.362355 GAACTGGGCCGTTTTGTGG 59.638 57.895 13.50 0.00 0.00 4.17
64 65 2.330041 CCGTTTTGTGGCCGTGAC 59.670 61.111 0.00 0.00 0.00 3.67
65 66 2.330041 CGTTTTGTGGCCGTGACC 59.670 61.111 0.00 0.00 0.00 4.02
66 67 2.725641 GTTTTGTGGCCGTGACCC 59.274 61.111 0.00 0.00 0.00 4.46
67 68 2.519780 TTTTGTGGCCGTGACCCC 60.520 61.111 0.00 0.00 0.00 4.95
68 69 3.063197 TTTTGTGGCCGTGACCCCT 62.063 57.895 0.00 0.00 0.00 4.79
69 70 1.706995 TTTTGTGGCCGTGACCCCTA 61.707 55.000 0.00 0.00 0.00 3.53
70 71 1.706995 TTTGTGGCCGTGACCCCTAA 61.707 55.000 0.00 0.00 0.00 2.69
71 72 1.706995 TTGTGGCCGTGACCCCTAAA 61.707 55.000 0.00 0.00 0.00 1.85
72 73 1.301954 GTGGCCGTGACCCCTAAAT 59.698 57.895 0.00 0.00 0.00 1.40
73 74 0.542805 GTGGCCGTGACCCCTAAATA 59.457 55.000 0.00 0.00 0.00 1.40
74 75 1.142262 GTGGCCGTGACCCCTAAATAT 59.858 52.381 0.00 0.00 0.00 1.28
75 76 1.142060 TGGCCGTGACCCCTAAATATG 59.858 52.381 0.00 0.00 0.00 1.78
76 77 1.142262 GGCCGTGACCCCTAAATATGT 59.858 52.381 0.00 0.00 0.00 2.29
77 78 2.422377 GGCCGTGACCCCTAAATATGTT 60.422 50.000 0.00 0.00 0.00 2.71
78 79 3.284617 GCCGTGACCCCTAAATATGTTT 58.715 45.455 0.00 0.00 0.00 2.83
79 80 3.697542 GCCGTGACCCCTAAATATGTTTT 59.302 43.478 0.00 0.00 0.00 2.43
80 81 4.883006 GCCGTGACCCCTAAATATGTTTTA 59.117 41.667 0.00 0.00 0.00 1.52
81 82 5.357596 GCCGTGACCCCTAAATATGTTTTAA 59.642 40.000 0.00 0.00 0.00 1.52
82 83 6.459161 GCCGTGACCCCTAAATATGTTTTAAG 60.459 42.308 0.00 0.00 0.00 1.85
83 84 6.600427 CCGTGACCCCTAAATATGTTTTAAGT 59.400 38.462 0.00 0.00 0.00 2.24
84 85 7.121611 CCGTGACCCCTAAATATGTTTTAAGTT 59.878 37.037 0.00 0.00 0.00 2.66
85 86 8.517056 CGTGACCCCTAAATATGTTTTAAGTTT 58.483 33.333 0.00 0.00 0.00 2.66
115 116 7.862741 AACTGCGTTTATTTACTTTTTAGGC 57.137 32.000 0.00 0.00 0.00 3.93
116 117 6.972722 ACTGCGTTTATTTACTTTTTAGGCA 58.027 32.000 0.00 0.00 0.00 4.75
117 118 7.599171 ACTGCGTTTATTTACTTTTTAGGCAT 58.401 30.769 0.00 0.00 0.00 4.40
118 119 8.085909 ACTGCGTTTATTTACTTTTTAGGCATT 58.914 29.630 0.00 0.00 0.00 3.56
119 120 8.819643 TGCGTTTATTTACTTTTTAGGCATTT 57.180 26.923 0.00 0.00 0.00 2.32
120 121 9.262358 TGCGTTTATTTACTTTTTAGGCATTTT 57.738 25.926 0.00 0.00 0.00 1.82
150 151 2.835580 TTTTAATCACGTCCACCCGA 57.164 45.000 0.00 0.00 0.00 5.14
151 152 2.083167 TTTAATCACGTCCACCCGAC 57.917 50.000 0.00 0.00 38.21 4.79
152 153 0.967662 TTAATCACGTCCACCCGACA 59.032 50.000 0.00 0.00 42.07 4.35
153 154 0.967662 TAATCACGTCCACCCGACAA 59.032 50.000 0.00 0.00 42.07 3.18
154 155 0.320421 AATCACGTCCACCCGACAAG 60.320 55.000 0.00 0.00 42.07 3.16
155 156 1.183030 ATCACGTCCACCCGACAAGA 61.183 55.000 0.00 0.00 42.07 3.02
156 157 1.183030 TCACGTCCACCCGACAAGAT 61.183 55.000 0.00 0.00 42.07 2.40
157 158 0.320421 CACGTCCACCCGACAAGATT 60.320 55.000 0.00 0.00 42.07 2.40
158 159 0.395312 ACGTCCACCCGACAAGATTT 59.605 50.000 0.00 0.00 42.07 2.17
159 160 1.202722 ACGTCCACCCGACAAGATTTT 60.203 47.619 0.00 0.00 42.07 1.82
160 161 1.196808 CGTCCACCCGACAAGATTTTG 59.803 52.381 0.00 0.00 42.07 2.44
161 162 1.539827 GTCCACCCGACAAGATTTTGG 59.460 52.381 0.57 0.00 41.54 3.28
162 163 0.887933 CCACCCGACAAGATTTTGGG 59.112 55.000 0.57 0.00 45.70 4.12
165 166 0.243636 CCCGACAAGATTTTGGGTGC 59.756 55.000 0.57 0.00 38.66 5.01
166 167 0.109781 CCGACAAGATTTTGGGTGCG 60.110 55.000 0.57 0.00 38.66 5.34
167 168 0.109781 CGACAAGATTTTGGGTGCGG 60.110 55.000 0.57 0.00 38.66 5.69
168 169 0.388520 GACAAGATTTTGGGTGCGGC 60.389 55.000 0.57 0.00 38.66 6.53
169 170 1.079888 CAAGATTTTGGGTGCGGCC 60.080 57.895 0.00 0.00 0.00 6.13
170 171 2.635443 AAGATTTTGGGTGCGGCCG 61.635 57.895 24.05 24.05 38.44 6.13
171 172 4.794439 GATTTTGGGTGCGGCCGC 62.794 66.667 42.35 42.35 42.35 6.53
190 191 4.728102 CGTTAGGCGCACCCACGA 62.728 66.667 10.83 0.00 43.00 4.35
191 192 3.116531 GTTAGGCGCACCCACGAC 61.117 66.667 10.83 0.00 43.08 4.34
192 193 4.382320 TTAGGCGCACCCACGACC 62.382 66.667 10.83 0.00 44.12 4.79
199 200 3.931247 CACCCACGACCCAACGGA 61.931 66.667 0.00 0.00 37.61 4.69
200 201 3.932483 ACCCACGACCCAACGGAC 61.932 66.667 0.00 0.00 37.61 4.79
201 202 3.931247 CCCACGACCCAACGGACA 61.931 66.667 0.00 0.00 37.61 4.02
202 203 2.109387 CCACGACCCAACGGACAA 59.891 61.111 0.00 0.00 37.61 3.18
203 204 1.524165 CCACGACCCAACGGACAAA 60.524 57.895 0.00 0.00 37.61 2.83
204 205 1.644913 CACGACCCAACGGACAAAC 59.355 57.895 0.00 0.00 37.61 2.93
205 206 1.090625 CACGACCCAACGGACAAACA 61.091 55.000 0.00 0.00 37.61 2.83
206 207 1.091197 ACGACCCAACGGACAAACAC 61.091 55.000 0.00 0.00 37.61 3.32
207 208 1.644913 GACCCAACGGACAAACACG 59.355 57.895 0.00 0.00 0.00 4.49
208 209 1.778027 GACCCAACGGACAAACACGG 61.778 60.000 0.00 0.00 0.00 4.94
209 210 1.524165 CCCAACGGACAAACACGGA 60.524 57.895 0.00 0.00 0.00 4.69
210 211 1.644913 CCAACGGACAAACACGGAC 59.355 57.895 0.00 0.00 0.00 4.79
211 212 1.090625 CCAACGGACAAACACGGACA 61.091 55.000 0.00 0.00 0.00 4.02
212 213 0.941542 CAACGGACAAACACGGACAT 59.058 50.000 0.00 0.00 0.00 3.06
213 214 0.941542 AACGGACAAACACGGACATG 59.058 50.000 0.00 0.00 0.00 3.21
214 215 0.882927 ACGGACAAACACGGACATGG 60.883 55.000 0.00 0.00 0.00 3.66
215 216 1.573829 CGGACAAACACGGACATGGG 61.574 60.000 0.00 0.00 0.00 4.00
216 217 1.579429 GACAAACACGGACATGGGC 59.421 57.895 0.00 0.00 0.00 5.36
217 218 2.182614 GACAAACACGGACATGGGCG 62.183 60.000 0.00 0.00 0.00 6.13
218 219 1.963855 CAAACACGGACATGGGCGA 60.964 57.895 0.00 0.00 0.00 5.54
219 220 1.228003 AAACACGGACATGGGCGAA 60.228 52.632 0.00 0.00 0.00 4.70
220 221 1.512156 AAACACGGACATGGGCGAAC 61.512 55.000 0.00 0.00 0.00 3.95
221 222 3.124921 CACGGACATGGGCGAACC 61.125 66.667 0.00 0.00 40.81 3.62
242 243 4.697756 CGCCGCCTCAAAGGGACA 62.698 66.667 0.00 0.00 35.37 4.02
243 244 2.282180 GCCGCCTCAAAGGGACAA 60.282 61.111 0.00 0.00 35.37 3.18
244 245 1.901464 GCCGCCTCAAAGGGACAAA 60.901 57.895 0.00 0.00 35.37 2.83
245 246 1.460273 GCCGCCTCAAAGGGACAAAA 61.460 55.000 0.00 0.00 35.37 2.44
246 247 1.256812 CCGCCTCAAAGGGACAAAAT 58.743 50.000 0.00 0.00 35.37 1.82
247 248 1.202348 CCGCCTCAAAGGGACAAAATC 59.798 52.381 0.00 0.00 35.37 2.17
255 256 4.707791 GGACAAAATCCGGTCCGT 57.292 55.556 11.06 0.00 43.67 4.69
256 257 2.936928 GGACAAAATCCGGTCCGTT 58.063 52.632 11.06 0.00 43.67 4.44
257 258 1.241165 GGACAAAATCCGGTCCGTTT 58.759 50.000 11.06 2.05 43.67 3.60
258 259 1.068816 GGACAAAATCCGGTCCGTTTG 60.069 52.381 19.03 19.03 43.67 2.93
259 260 0.955905 ACAAAATCCGGTCCGTTTGG 59.044 50.000 22.53 13.19 35.69 3.28
260 261 0.242555 CAAAATCCGGTCCGTTTGGG 59.757 55.000 11.06 0.00 35.24 4.12
261 262 0.110869 AAAATCCGGTCCGTTTGGGA 59.889 50.000 11.06 0.00 44.68 4.37
268 269 4.713946 TCCGTTTGGGAGTCATGC 57.286 55.556 0.00 0.00 40.94 4.06
269 270 1.375396 TCCGTTTGGGAGTCATGCG 60.375 57.895 0.00 0.00 40.94 4.73
270 271 2.398554 CCGTTTGGGAGTCATGCGG 61.399 63.158 0.00 0.00 38.47 5.69
271 272 1.671054 CGTTTGGGAGTCATGCGGT 60.671 57.895 0.00 0.00 0.00 5.68
272 273 1.875963 GTTTGGGAGTCATGCGGTG 59.124 57.895 0.00 0.00 0.00 4.94
273 274 1.303236 TTTGGGAGTCATGCGGTGG 60.303 57.895 0.00 0.00 0.00 4.61
274 275 1.773856 TTTGGGAGTCATGCGGTGGA 61.774 55.000 0.00 0.00 0.00 4.02
275 276 1.773856 TTGGGAGTCATGCGGTGGAA 61.774 55.000 0.00 0.00 0.00 3.53
276 277 1.224592 GGGAGTCATGCGGTGGAAT 59.775 57.895 0.00 0.00 0.00 3.01
277 278 0.394352 GGGAGTCATGCGGTGGAATT 60.394 55.000 0.00 0.00 0.00 2.17
278 279 0.734889 GGAGTCATGCGGTGGAATTG 59.265 55.000 0.00 0.00 0.00 2.32
279 280 0.734889 GAGTCATGCGGTGGAATTGG 59.265 55.000 0.00 0.00 0.00 3.16
280 281 1.139520 GTCATGCGGTGGAATTGGC 59.860 57.895 0.00 0.00 0.00 4.52
281 282 2.051518 TCATGCGGTGGAATTGGCC 61.052 57.895 0.00 0.00 0.00 5.36
314 315 3.535561 CAGTGGCAAAGGTACCTATGAG 58.464 50.000 16.67 6.65 0.00 2.90
321 325 2.660670 AGGTACCTATGAGGAGGACG 57.339 55.000 14.41 0.00 37.67 4.79
342 346 3.995526 CTCTTGTGACTGAGCACCA 57.004 52.632 4.94 0.00 37.99 4.17
354 358 2.956987 GCACCAAGCACGCAGAAT 59.043 55.556 0.00 0.00 44.79 2.40
358 362 0.593128 ACCAAGCACGCAGAATGAAC 59.407 50.000 0.00 0.00 39.69 3.18
394 398 1.473258 AACCAAACTGTTGCTGCTCA 58.527 45.000 0.00 0.00 33.01 4.26
415 424 0.034337 ACGGCGGCGGATATACAAAT 59.966 50.000 35.05 7.19 0.00 2.32
526 535 2.759560 GCACCCGCCCATTCCATT 60.760 61.111 0.00 0.00 0.00 3.16
565 574 4.335647 CCAAGTGGGAGCGGCAGT 62.336 66.667 1.45 0.00 40.01 4.40
619 629 1.515020 GCAAGCCAACAACACACCA 59.485 52.632 0.00 0.00 0.00 4.17
642 652 1.597461 GGGCCAAGCTAGAGAACGT 59.403 57.895 4.39 0.00 0.00 3.99
643 653 0.822164 GGGCCAAGCTAGAGAACGTA 59.178 55.000 4.39 0.00 0.00 3.57
683 710 2.713967 CCAAGGGCCCGCATCTTTG 61.714 63.158 18.44 14.26 0.00 2.77
725 849 2.693762 CCGTTGTGCTCATGGCCAG 61.694 63.158 13.05 3.43 40.92 4.85
810 1087 0.251787 GGCAAAACCTCCCATCACCT 60.252 55.000 0.00 0.00 34.51 4.00
811 1088 1.177401 GCAAAACCTCCCATCACCTC 58.823 55.000 0.00 0.00 0.00 3.85
812 1089 1.453155 CAAAACCTCCCATCACCTCG 58.547 55.000 0.00 0.00 0.00 4.63
817 1094 2.038813 TCCCATCACCTCGCCTCA 59.961 61.111 0.00 0.00 0.00 3.86
864 1144 1.135315 CCCATCACAATTCACAAGCCG 60.135 52.381 0.00 0.00 0.00 5.52
879 1159 0.244450 AGCCGCCACAACAATCATTG 59.756 50.000 0.00 0.00 35.59 2.82
882 1162 2.731968 GCCGCCACAACAATCATTGTAG 60.732 50.000 2.67 0.00 44.59 2.74
884 1164 3.057596 CCGCCACAACAATCATTGTAGTT 60.058 43.478 2.67 0.00 44.59 2.24
885 1165 3.913763 CGCCACAACAATCATTGTAGTTG 59.086 43.478 2.67 1.09 44.59 3.16
916 1201 2.560119 CCGATCGAGCTCCCTCCTG 61.560 68.421 18.66 0.00 34.49 3.86
921 1206 0.395862 TCGAGCTCCCTCCTGGTTAG 60.396 60.000 8.47 0.00 34.49 2.34
922 1207 1.826709 GAGCTCCCTCCTGGTTAGC 59.173 63.158 0.87 0.00 39.41 3.09
923 1208 0.689412 GAGCTCCCTCCTGGTTAGCT 60.689 60.000 0.87 12.29 46.77 3.32
924 1209 0.637195 AGCTCCCTCCTGGTTAGCTA 59.363 55.000 11.25 0.00 44.17 3.32
936 1221 4.753516 TGGTTAGCTATAAGCAGCAAGA 57.246 40.909 0.00 0.00 45.56 3.02
948 1233 4.808238 GCAAGAAGCAGCGCTCGC 62.808 66.667 19.82 19.82 44.79 5.03
980 1265 2.745884 CGACATGGCCGGCAAGAA 60.746 61.111 30.85 11.08 0.00 2.52
982 1267 2.361610 ACATGGCCGGCAAGAAGG 60.362 61.111 30.85 14.55 0.00 3.46
1282 1594 0.475906 GATCCATCCACCCTCCCAAG 59.524 60.000 0.00 0.00 0.00 3.61
1283 1595 0.253820 ATCCATCCACCCTCCCAAGT 60.254 55.000 0.00 0.00 0.00 3.16
1284 1596 0.914417 TCCATCCACCCTCCCAAGTC 60.914 60.000 0.00 0.00 0.00 3.01
1285 1597 1.609783 CATCCACCCTCCCAAGTCC 59.390 63.158 0.00 0.00 0.00 3.85
1286 1598 1.619669 ATCCACCCTCCCAAGTCCC 60.620 63.158 0.00 0.00 0.00 4.46
1287 1599 2.431047 ATCCACCCTCCCAAGTCCCA 62.431 60.000 0.00 0.00 0.00 4.37
1288 1600 2.160171 CCACCCTCCCAAGTCCCAA 61.160 63.158 0.00 0.00 0.00 4.12
1289 1601 1.074951 CACCCTCCCAAGTCCCAAC 59.925 63.158 0.00 0.00 0.00 3.77
1290 1602 1.386772 ACCCTCCCAAGTCCCAACA 60.387 57.895 0.00 0.00 0.00 3.33
1291 1603 0.776080 ACCCTCCCAAGTCCCAACAT 60.776 55.000 0.00 0.00 0.00 2.71
1292 1604 0.034089 CCCTCCCAAGTCCCAACATC 60.034 60.000 0.00 0.00 0.00 3.06
1293 1605 0.995024 CCTCCCAAGTCCCAACATCT 59.005 55.000 0.00 0.00 0.00 2.90
1294 1606 1.340405 CCTCCCAAGTCCCAACATCTG 60.340 57.143 0.00 0.00 0.00 2.90
1295 1607 1.352352 CTCCCAAGTCCCAACATCTGT 59.648 52.381 0.00 0.00 0.00 3.41
1296 1608 1.351017 TCCCAAGTCCCAACATCTGTC 59.649 52.381 0.00 0.00 0.00 3.51
1385 1703 1.268899 AGTATACATGTACCGAGCCGC 59.731 52.381 7.96 0.00 0.00 6.53
1398 1716 0.798776 GAGCCGCATATACATGTGCC 59.201 55.000 9.11 0.00 41.18 5.01
1448 1766 2.673862 CGGTGTGTGAAAGTGTGTGTTA 59.326 45.455 0.00 0.00 0.00 2.41
1462 1784 1.906574 TGTGTTACCATGTCCCCTCTC 59.093 52.381 0.00 0.00 0.00 3.20
1472 1794 3.775654 CCCCTCTCGGCAGTGACC 61.776 72.222 0.00 0.00 0.00 4.02
1485 1807 1.066454 CAGTGACCGTGTCTGTGTGTA 59.934 52.381 5.77 0.00 33.15 2.90
1509 1835 5.789643 ACATTGCCACTACTTCAAATGTT 57.210 34.783 0.00 0.00 0.00 2.71
1538 1865 8.181573 CACTTTATACATGTGTATGTGGTTTCC 58.818 37.037 19.23 0.00 46.63 3.13
1556 1883 5.634859 GGTTTCCGTAAACAATCTACTTCGA 59.365 40.000 5.94 0.00 45.68 3.71
1585 1913 0.608640 ATCCACCGACAGAACTCCAC 59.391 55.000 0.00 0.00 0.00 4.02
1640 1968 4.219143 TCGTGTCATGTTAGCGGTATAG 57.781 45.455 0.00 0.00 0.00 1.31
1642 1970 4.815846 TCGTGTCATGTTAGCGGTATAGTA 59.184 41.667 0.00 0.00 0.00 1.82
1644 1972 6.650390 TCGTGTCATGTTAGCGGTATAGTATA 59.350 38.462 0.00 0.00 0.00 1.47
1646 1974 7.428472 CGTGTCATGTTAGCGGTATAGTATATG 59.572 40.741 0.00 0.00 0.00 1.78
1647 1975 8.242053 GTGTCATGTTAGCGGTATAGTATATGT 58.758 37.037 0.00 0.00 0.00 2.29
1648 1976 8.799367 TGTCATGTTAGCGGTATAGTATATGTT 58.201 33.333 0.00 0.00 0.00 2.71
1649 1977 9.635520 GTCATGTTAGCGGTATAGTATATGTTT 57.364 33.333 0.00 0.00 0.00 2.83
1675 2012 4.216411 CCGGAAAGGGTCAGATCTAAAA 57.784 45.455 0.00 0.00 35.97 1.52
1676 2013 4.192317 CCGGAAAGGGTCAGATCTAAAAG 58.808 47.826 0.00 0.00 35.97 2.27
1677 2014 4.323562 CCGGAAAGGGTCAGATCTAAAAGT 60.324 45.833 0.00 0.00 35.97 2.66
1678 2015 5.246307 CGGAAAGGGTCAGATCTAAAAGTT 58.754 41.667 0.00 0.00 0.00 2.66
1679 2016 5.351740 CGGAAAGGGTCAGATCTAAAAGTTC 59.648 44.000 0.00 0.00 0.00 3.01
1680 2017 5.351740 GGAAAGGGTCAGATCTAAAAGTTCG 59.648 44.000 0.00 0.00 0.00 3.95
1681 2018 5.740290 AAGGGTCAGATCTAAAAGTTCGA 57.260 39.130 0.00 0.00 0.00 3.71
1682 2019 5.740290 AGGGTCAGATCTAAAAGTTCGAA 57.260 39.130 0.00 0.00 0.00 3.71
1683 2020 6.301169 AGGGTCAGATCTAAAAGTTCGAAT 57.699 37.500 0.00 0.00 0.00 3.34
1684 2021 7.419711 AGGGTCAGATCTAAAAGTTCGAATA 57.580 36.000 0.00 0.00 0.00 1.75
1685 2022 7.848128 AGGGTCAGATCTAAAAGTTCGAATAA 58.152 34.615 0.00 0.00 0.00 1.40
1686 2023 7.982354 AGGGTCAGATCTAAAAGTTCGAATAAG 59.018 37.037 0.00 0.00 0.00 1.73
1710 2047 6.091441 AGTTCATTCGAAGTACAAAGCATCTC 59.909 38.462 3.35 0.00 32.82 2.75
1712 2049 5.578336 TCATTCGAAGTACAAAGCATCTCAG 59.422 40.000 3.35 0.00 0.00 3.35
1747 2084 9.699410 AAAATTACATCTATTTCCAGACCATCA 57.301 29.630 0.00 0.00 0.00 3.07
1751 2088 7.578310 ACATCTATTTCCAGACCATCAAATG 57.422 36.000 0.00 0.00 0.00 2.32
1752 2089 7.348815 ACATCTATTTCCAGACCATCAAATGA 58.651 34.615 0.00 0.00 0.00 2.57
1753 2090 7.284034 ACATCTATTTCCAGACCATCAAATGAC 59.716 37.037 0.00 0.00 0.00 3.06
1755 2092 8.089625 TCTATTTCCAGACCATCAAATGACTA 57.910 34.615 0.00 0.00 0.00 2.59
1756 2093 7.987458 TCTATTTCCAGACCATCAAATGACTAC 59.013 37.037 0.00 0.00 0.00 2.73
1757 2094 5.762179 TTCCAGACCATCAAATGACTACT 57.238 39.130 0.00 0.00 0.00 2.57
1758 2095 5.089970 TCCAGACCATCAAATGACTACTG 57.910 43.478 0.00 0.00 0.00 2.74
1759 2096 3.624861 CCAGACCATCAAATGACTACTGC 59.375 47.826 0.00 0.00 0.00 4.40
1760 2097 4.511527 CAGACCATCAAATGACTACTGCT 58.488 43.478 0.00 0.00 0.00 4.24
1762 2099 6.286758 CAGACCATCAAATGACTACTGCTAT 58.713 40.000 0.00 0.00 0.00 2.97
1764 2101 6.765036 AGACCATCAAATGACTACTGCTATTG 59.235 38.462 0.00 0.00 0.00 1.90
1765 2102 5.297776 ACCATCAAATGACTACTGCTATTGC 59.702 40.000 0.00 0.00 40.20 3.56
1766 2103 5.278169 CCATCAAATGACTACTGCTATTGCC 60.278 44.000 0.00 0.00 38.71 4.52
1768 2105 4.877823 TCAAATGACTACTGCTATTGCCAG 59.122 41.667 0.00 0.00 38.71 4.85
1769 2106 4.760530 AATGACTACTGCTATTGCCAGA 57.239 40.909 0.00 0.00 38.71 3.86
1770 2107 4.760530 ATGACTACTGCTATTGCCAGAA 57.239 40.909 0.00 0.00 38.71 3.02
1771 2108 3.861840 TGACTACTGCTATTGCCAGAAC 58.138 45.455 0.00 0.00 38.71 3.01
1772 2109 2.860735 GACTACTGCTATTGCCAGAACG 59.139 50.000 0.00 0.00 38.71 3.95
1773 2110 2.496070 ACTACTGCTATTGCCAGAACGA 59.504 45.455 0.00 0.00 38.71 3.85
1775 2112 0.654683 CTGCTATTGCCAGAACGAGC 59.345 55.000 0.00 0.00 38.71 5.03
1776 2113 0.744414 TGCTATTGCCAGAACGAGCC 60.744 55.000 0.00 0.00 38.71 4.70
1777 2114 0.744414 GCTATTGCCAGAACGAGCCA 60.744 55.000 0.00 0.00 0.00 4.75
1778 2115 1.959042 CTATTGCCAGAACGAGCCAT 58.041 50.000 0.00 0.00 0.00 4.40
1779 2116 2.292267 CTATTGCCAGAACGAGCCATT 58.708 47.619 0.00 0.00 0.00 3.16
1780 2117 0.813184 ATTGCCAGAACGAGCCATTG 59.187 50.000 0.00 0.00 0.00 2.82
1781 2118 0.537143 TTGCCAGAACGAGCCATTGT 60.537 50.000 0.00 0.00 0.00 2.71
1782 2119 0.537143 TGCCAGAACGAGCCATTGTT 60.537 50.000 0.00 0.00 35.63 2.83
1785 2122 2.699954 CCAGAACGAGCCATTGTTAGT 58.300 47.619 0.00 0.00 32.90 2.24
1786 2123 2.416547 CCAGAACGAGCCATTGTTAGTG 59.583 50.000 0.00 0.00 32.90 2.74
1788 2125 3.935203 CAGAACGAGCCATTGTTAGTGAT 59.065 43.478 0.00 0.00 32.90 3.06
1790 2127 5.755375 CAGAACGAGCCATTGTTAGTGATAT 59.245 40.000 0.00 0.00 32.90 1.63
1796 2428 5.518865 AGCCATTGTTAGTGATATTTGGGT 58.481 37.500 0.00 0.00 0.00 4.51
1814 2446 3.059386 GAAAATGTCGGCGGCCCA 61.059 61.111 14.55 6.96 0.00 5.36
1821 2453 3.536917 TCGGCGGCCCAGTAGATG 61.537 66.667 14.55 0.00 0.00 2.90
1822 2454 3.536917 CGGCGGCCCAGTAGATGA 61.537 66.667 14.55 0.00 0.00 2.92
1823 2455 2.423446 GGCGGCCCAGTAGATGAG 59.577 66.667 8.12 0.00 0.00 2.90
1824 2456 2.423446 GCGGCCCAGTAGATGAGG 59.577 66.667 0.00 0.00 0.00 3.86
1825 2457 2.134287 GCGGCCCAGTAGATGAGGA 61.134 63.158 0.00 0.00 0.00 3.71
1826 2458 1.742768 CGGCCCAGTAGATGAGGAC 59.257 63.158 0.00 0.00 0.00 3.85
1836 2469 5.513094 CCAGTAGATGAGGACCAAGAAACAA 60.513 44.000 0.00 0.00 0.00 2.83
1882 2515 9.763465 ACATTTATTTACTTTTGGACGATTACG 57.237 29.630 0.00 0.00 45.75 3.18
1899 2532 6.013085 CGATTACGTGGACATTTTAACAGTG 58.987 40.000 0.00 0.00 34.56 3.66
1900 2533 6.347079 CGATTACGTGGACATTTTAACAGTGT 60.347 38.462 0.00 0.00 34.56 3.55
1901 2534 6.680874 TTACGTGGACATTTTAACAGTGTT 57.319 33.333 14.05 14.05 0.00 3.32
1902 2535 5.570234 ACGTGGACATTTTAACAGTGTTT 57.430 34.783 14.90 0.00 0.00 2.83
1903 2536 5.336744 ACGTGGACATTTTAACAGTGTTTG 58.663 37.500 14.90 8.81 0.00 2.93
1904 2537 5.124138 ACGTGGACATTTTAACAGTGTTTGA 59.876 36.000 14.90 0.50 0.00 2.69
1906 2539 6.695278 CGTGGACATTTTAACAGTGTTTGATT 59.305 34.615 14.90 0.00 0.00 2.57
1907 2540 7.221838 CGTGGACATTTTAACAGTGTTTGATTT 59.778 33.333 14.90 0.00 0.00 2.17
1908 2541 8.878769 GTGGACATTTTAACAGTGTTTGATTTT 58.121 29.630 14.90 0.00 0.00 1.82
1919 2552 9.946165 AACAGTGTTTGATTTTAAACTAGCTAC 57.054 29.630 1.64 0.00 40.36 3.58
1920 2553 9.116067 ACAGTGTTTGATTTTAAACTAGCTACA 57.884 29.630 0.00 0.00 40.36 2.74
1933 2566 4.734917 ACTAGCTACATATTTCGATCGGC 58.265 43.478 16.41 7.19 0.00 5.54
1934 2567 3.660501 AGCTACATATTTCGATCGGCA 57.339 42.857 16.41 2.07 0.00 5.69
1935 2568 3.579709 AGCTACATATTTCGATCGGCAG 58.420 45.455 16.41 0.00 0.00 4.85
1936 2569 3.005897 AGCTACATATTTCGATCGGCAGT 59.994 43.478 16.41 8.30 0.00 4.40
1937 2570 3.741344 GCTACATATTTCGATCGGCAGTT 59.259 43.478 16.41 0.00 0.00 3.16
1940 2573 4.689071 ACATATTTCGATCGGCAGTTACA 58.311 39.130 16.41 0.00 0.00 2.41
1941 2574 5.113383 ACATATTTCGATCGGCAGTTACAA 58.887 37.500 16.41 0.00 0.00 2.41
1942 2575 5.583061 ACATATTTCGATCGGCAGTTACAAA 59.417 36.000 16.41 6.05 0.00 2.83
1943 2576 3.799137 TTTCGATCGGCAGTTACAAAC 57.201 42.857 16.41 0.00 0.00 2.93
1944 2577 1.342555 TCGATCGGCAGTTACAAACG 58.657 50.000 16.41 0.00 36.23 3.60
1945 2578 0.247145 CGATCGGCAGTTACAAACGC 60.247 55.000 7.38 0.00 36.23 4.84
1946 2579 0.247145 GATCGGCAGTTACAAACGCG 60.247 55.000 3.53 3.53 36.23 6.01
1947 2580 0.947180 ATCGGCAGTTACAAACGCGT 60.947 50.000 5.58 5.58 36.23 6.01
1948 2581 1.438059 CGGCAGTTACAAACGCGTG 60.438 57.895 14.98 3.14 36.23 5.34
1949 2582 1.823260 CGGCAGTTACAAACGCGTGA 61.823 55.000 14.98 0.00 36.23 4.35
1950 2583 0.305313 GGCAGTTACAAACGCGTGAA 59.695 50.000 14.98 1.76 36.23 3.18
1951 2584 1.268133 GGCAGTTACAAACGCGTGAAA 60.268 47.619 14.98 1.63 36.23 2.69
1952 2585 2.442424 GCAGTTACAAACGCGTGAAAA 58.558 42.857 14.98 2.04 36.23 2.29
1953 2586 2.847133 GCAGTTACAAACGCGTGAAAAA 59.153 40.909 14.98 2.46 36.23 1.94
1975 2608 4.185413 CGATGTAAGCGCCTGTGT 57.815 55.556 2.29 0.00 40.80 3.72
1976 2609 2.456000 CGATGTAAGCGCCTGTGTT 58.544 52.632 2.29 0.00 40.80 3.32
1977 2610 0.370273 CGATGTAAGCGCCTGTGTTC 59.630 55.000 2.29 0.00 40.80 3.18
1978 2611 1.726853 GATGTAAGCGCCTGTGTTCT 58.273 50.000 2.29 0.00 0.00 3.01
1979 2612 1.394917 GATGTAAGCGCCTGTGTTCTG 59.605 52.381 2.29 0.00 0.00 3.02
1980 2613 0.105964 TGTAAGCGCCTGTGTTCTGT 59.894 50.000 2.29 0.00 0.00 3.41
1981 2614 1.226746 GTAAGCGCCTGTGTTCTGTT 58.773 50.000 2.29 0.00 0.00 3.16
1982 2615 1.602377 GTAAGCGCCTGTGTTCTGTTT 59.398 47.619 2.29 0.00 0.00 2.83
1983 2616 0.663153 AAGCGCCTGTGTTCTGTTTC 59.337 50.000 2.29 0.00 0.00 2.78
1984 2617 0.463654 AGCGCCTGTGTTCTGTTTCA 60.464 50.000 2.29 0.00 0.00 2.69
1985 2618 0.317020 GCGCCTGTGTTCTGTTTCAC 60.317 55.000 0.00 0.00 35.43 3.18
1986 2619 1.013596 CGCCTGTGTTCTGTTTCACA 58.986 50.000 0.00 0.00 41.37 3.58
1987 2620 1.400142 CGCCTGTGTTCTGTTTCACAA 59.600 47.619 0.00 0.00 42.67 3.33
1988 2621 2.159448 CGCCTGTGTTCTGTTTCACAAA 60.159 45.455 0.00 0.00 42.67 2.83
1989 2622 3.671971 CGCCTGTGTTCTGTTTCACAAAA 60.672 43.478 0.00 0.00 42.67 2.44
1990 2623 4.241681 GCCTGTGTTCTGTTTCACAAAAA 58.758 39.130 0.00 0.00 42.67 1.94
1991 2624 4.091365 GCCTGTGTTCTGTTTCACAAAAAC 59.909 41.667 0.00 0.00 42.67 2.43
1992 2625 5.226396 CCTGTGTTCTGTTTCACAAAAACA 58.774 37.500 3.59 3.59 42.67 2.83
1993 2626 5.694006 CCTGTGTTCTGTTTCACAAAAACAA 59.306 36.000 5.03 0.00 42.67 2.83
1994 2627 6.201806 CCTGTGTTCTGTTTCACAAAAACAAA 59.798 34.615 5.03 2.16 42.67 2.83
1995 2628 7.254590 CCTGTGTTCTGTTTCACAAAAACAAAA 60.255 33.333 5.03 0.00 42.67 2.44
1996 2629 7.974675 TGTGTTCTGTTTCACAAAAACAAAAA 58.025 26.923 5.03 1.00 40.81 1.94
1997 2630 7.905493 TGTGTTCTGTTTCACAAAAACAAAAAC 59.095 29.630 15.01 15.01 40.81 2.43
1998 2631 7.905493 GTGTTCTGTTTCACAAAAACAAAAACA 59.095 29.630 17.96 17.96 40.09 2.83
1999 2632 8.450964 TGTTCTGTTTCACAAAAACAAAAACAA 58.549 25.926 18.80 9.87 39.80 2.83
2000 2633 9.278734 GTTCTGTTTCACAAAAACAAAAACAAA 57.721 25.926 16.05 0.00 38.81 2.83
2001 2634 9.840427 TTCTGTTTCACAAAAACAAAAACAAAA 57.160 22.222 5.03 0.00 38.81 2.44
2002 2635 9.840427 TCTGTTTCACAAAAACAAAAACAAAAA 57.160 22.222 5.03 0.00 38.81 1.94
2020 2653 4.992381 AAAAACTGCTAGATCGACACAC 57.008 40.909 0.00 0.00 0.00 3.82
2021 2654 3.944055 AAACTGCTAGATCGACACACT 57.056 42.857 0.00 0.00 0.00 3.55
2022 2655 3.944055 AACTGCTAGATCGACACACTT 57.056 42.857 0.00 0.00 0.00 3.16
2023 2656 5.386958 AAACTGCTAGATCGACACACTTA 57.613 39.130 0.00 0.00 0.00 2.24
2024 2657 5.584253 AACTGCTAGATCGACACACTTAT 57.416 39.130 0.00 0.00 0.00 1.73
2025 2658 6.694877 AACTGCTAGATCGACACACTTATA 57.305 37.500 0.00 0.00 0.00 0.98
2026 2659 6.307031 ACTGCTAGATCGACACACTTATAG 57.693 41.667 0.00 0.00 0.00 1.31
2027 2660 5.109662 TGCTAGATCGACACACTTATAGC 57.890 43.478 0.00 2.02 35.96 2.97
2028 2661 4.023107 TGCTAGATCGACACACTTATAGCC 60.023 45.833 5.83 0.00 34.82 3.93
2029 2662 4.023107 GCTAGATCGACACACTTATAGCCA 60.023 45.833 0.00 0.00 0.00 4.75
2030 2663 5.507482 GCTAGATCGACACACTTATAGCCAA 60.507 44.000 0.00 0.00 0.00 4.52
2031 2664 5.339008 AGATCGACACACTTATAGCCAAA 57.661 39.130 0.00 0.00 0.00 3.28
2032 2665 5.730550 AGATCGACACACTTATAGCCAAAA 58.269 37.500 0.00 0.00 0.00 2.44
2033 2666 6.170506 AGATCGACACACTTATAGCCAAAAA 58.829 36.000 0.00 0.00 0.00 1.94
2065 2698 6.406370 TCATATTATCAAGGGCCAGTAATCG 58.594 40.000 6.18 0.83 0.00 3.34
2071 2704 0.824759 AGGGCCAGTAATCGTCTGTC 59.175 55.000 6.18 0.00 0.00 3.51
2072 2705 0.527817 GGGCCAGTAATCGTCTGTCG 60.528 60.000 4.39 0.00 41.41 4.35
2073 2706 0.527817 GGCCAGTAATCGTCTGTCGG 60.528 60.000 0.00 0.00 40.32 4.79
2074 2707 0.172803 GCCAGTAATCGTCTGTCGGT 59.827 55.000 0.00 0.00 40.32 4.69
2078 2711 2.161808 CAGTAATCGTCTGTCGGTCTGT 59.838 50.000 0.00 0.00 40.32 3.41
2079 2712 2.161808 AGTAATCGTCTGTCGGTCTGTG 59.838 50.000 0.00 0.00 40.32 3.66
2080 2713 0.388649 AATCGTCTGTCGGTCTGTGC 60.389 55.000 0.00 0.00 40.32 4.57
2082 2715 2.734591 GTCTGTCGGTCTGTGCCA 59.265 61.111 0.00 0.00 0.00 4.92
2083 2716 1.069090 GTCTGTCGGTCTGTGCCAA 59.931 57.895 0.00 0.00 0.00 4.52
2084 2717 0.320771 GTCTGTCGGTCTGTGCCAAT 60.321 55.000 0.00 0.00 0.00 3.16
2085 2718 0.320683 TCTGTCGGTCTGTGCCAATG 60.321 55.000 0.00 0.00 0.00 2.82
2086 2719 1.915614 CTGTCGGTCTGTGCCAATGC 61.916 60.000 0.00 0.00 38.26 3.56
2087 2720 2.359850 TCGGTCTGTGCCAATGCC 60.360 61.111 0.00 0.00 36.33 4.40
2088 2721 2.672651 CGGTCTGTGCCAATGCCA 60.673 61.111 0.00 0.00 36.33 4.92
2089 2722 2.048023 CGGTCTGTGCCAATGCCAT 61.048 57.895 0.00 0.00 36.33 4.40
2090 2723 1.514087 GGTCTGTGCCAATGCCATG 59.486 57.895 0.00 0.00 36.33 3.66
2091 2724 1.252904 GGTCTGTGCCAATGCCATGT 61.253 55.000 0.00 0.00 36.33 3.21
2092 2725 0.171903 GTCTGTGCCAATGCCATGTC 59.828 55.000 0.00 0.00 36.33 3.06
2093 2726 0.038599 TCTGTGCCAATGCCATGTCT 59.961 50.000 0.00 0.00 36.33 3.41
2104 2737 2.001361 GCCATGTCTCATGCCAGCAC 62.001 60.000 0.00 0.00 0.00 4.40
2132 2765 6.878389 ACTTCTTTGTTTTTGGAGAATTGCAA 59.122 30.769 0.00 0.00 32.36 4.08
2134 2767 5.294060 TCTTTGTTTTTGGAGAATTGCAAGC 59.706 36.000 4.94 0.00 35.96 4.01
2140 2773 0.172803 GGAGAATTGCAAGCCAGCAG 59.827 55.000 4.94 0.00 46.54 4.24
2143 2776 1.005394 AATTGCAAGCCAGCAGCAC 60.005 52.632 4.94 0.00 46.54 4.40
2180 2813 1.134220 GGGGATCAACATCGCAGGTTA 60.134 52.381 0.00 0.00 42.55 2.85
2196 2829 5.277779 CGCAGGTTAGATGAAACAAACAAGA 60.278 40.000 0.00 0.00 0.00 3.02
2197 2830 6.568462 CGCAGGTTAGATGAAACAAACAAGAT 60.568 38.462 0.00 0.00 0.00 2.40
2198 2831 7.360861 CGCAGGTTAGATGAAACAAACAAGATA 60.361 37.037 0.00 0.00 0.00 1.98
2199 2832 7.750903 GCAGGTTAGATGAAACAAACAAGATAC 59.249 37.037 0.00 0.00 0.00 2.24
2200 2833 8.237267 CAGGTTAGATGAAACAAACAAGATACC 58.763 37.037 0.00 0.00 0.00 2.73
2201 2834 7.393515 AGGTTAGATGAAACAAACAAGATACCC 59.606 37.037 0.00 0.00 0.00 3.69
2202 2835 7.393515 GGTTAGATGAAACAAACAAGATACCCT 59.606 37.037 0.00 0.00 0.00 4.34
2203 2836 8.451748 GTTAGATGAAACAAACAAGATACCCTC 58.548 37.037 0.00 0.00 0.00 4.30
2204 2837 5.946377 AGATGAAACAAACAAGATACCCTCC 59.054 40.000 0.00 0.00 0.00 4.30
2205 2838 5.319043 TGAAACAAACAAGATACCCTCCT 57.681 39.130 0.00 0.00 0.00 3.69
2206 2839 5.070001 TGAAACAAACAAGATACCCTCCTG 58.930 41.667 0.00 0.00 0.00 3.86
2207 2840 3.073274 ACAAACAAGATACCCTCCTGC 57.927 47.619 0.00 0.00 0.00 4.85
2208 2841 2.009774 CAAACAAGATACCCTCCTGCG 58.990 52.381 0.00 0.00 0.00 5.18
2209 2842 0.107654 AACAAGATACCCTCCTGCGC 60.108 55.000 0.00 0.00 0.00 6.09
2210 2843 1.264749 ACAAGATACCCTCCTGCGCA 61.265 55.000 10.98 10.98 0.00 6.09
2211 2844 0.107703 CAAGATACCCTCCTGCGCAA 60.108 55.000 13.05 0.00 0.00 4.85
2212 2845 0.839946 AAGATACCCTCCTGCGCAAT 59.160 50.000 13.05 0.00 0.00 3.56
2213 2846 0.839946 AGATACCCTCCTGCGCAATT 59.160 50.000 13.05 0.00 0.00 2.32
2214 2847 1.212935 AGATACCCTCCTGCGCAATTT 59.787 47.619 13.05 0.00 0.00 1.82
2215 2848 1.604278 GATACCCTCCTGCGCAATTTC 59.396 52.381 13.05 0.00 0.00 2.17
2216 2849 0.326595 TACCCTCCTGCGCAATTTCA 59.673 50.000 13.05 0.00 0.00 2.69
2217 2850 0.962356 ACCCTCCTGCGCAATTTCAG 60.962 55.000 13.05 2.57 0.00 3.02
2218 2851 0.962356 CCCTCCTGCGCAATTTCAGT 60.962 55.000 13.05 0.00 0.00 3.41
2219 2852 1.678728 CCCTCCTGCGCAATTTCAGTA 60.679 52.381 13.05 0.00 0.00 2.74
2220 2853 1.667724 CCTCCTGCGCAATTTCAGTAG 59.332 52.381 13.05 0.00 0.00 2.57
2221 2854 2.621338 CTCCTGCGCAATTTCAGTAGA 58.379 47.619 13.05 0.00 0.00 2.59
2222 2855 2.606725 CTCCTGCGCAATTTCAGTAGAG 59.393 50.000 13.05 2.87 0.00 2.43
2223 2856 1.063174 CCTGCGCAATTTCAGTAGAGC 59.937 52.381 13.05 0.00 0.00 4.09
2224 2857 1.733912 CTGCGCAATTTCAGTAGAGCA 59.266 47.619 13.05 0.00 0.00 4.26
2225 2858 1.733912 TGCGCAATTTCAGTAGAGCAG 59.266 47.619 8.16 0.00 0.00 4.24
2226 2859 1.063174 GCGCAATTTCAGTAGAGCAGG 59.937 52.381 0.30 0.00 0.00 4.85
2227 2860 2.350522 CGCAATTTCAGTAGAGCAGGT 58.649 47.619 0.00 0.00 0.00 4.00
2228 2861 3.521560 CGCAATTTCAGTAGAGCAGGTA 58.478 45.455 0.00 0.00 0.00 3.08
2229 2862 3.307242 CGCAATTTCAGTAGAGCAGGTAC 59.693 47.826 0.00 0.00 0.00 3.34
2230 2863 4.253685 GCAATTTCAGTAGAGCAGGTACA 58.746 43.478 0.00 0.00 0.00 2.90
2231 2864 4.878397 GCAATTTCAGTAGAGCAGGTACAT 59.122 41.667 0.00 0.00 0.00 2.29
2232 2865 5.220739 GCAATTTCAGTAGAGCAGGTACATG 60.221 44.000 2.43 2.43 0.00 3.21
2233 2866 5.939764 ATTTCAGTAGAGCAGGTACATGA 57.060 39.130 12.53 0.00 0.00 3.07
2234 2867 5.738619 TTTCAGTAGAGCAGGTACATGAA 57.261 39.130 12.53 0.00 0.00 2.57
2235 2868 4.720649 TCAGTAGAGCAGGTACATGAAC 57.279 45.455 12.53 4.04 0.00 3.18
2236 2869 4.344978 TCAGTAGAGCAGGTACATGAACT 58.655 43.478 12.53 11.32 0.00 3.01
2237 2870 4.772624 TCAGTAGAGCAGGTACATGAACTT 59.227 41.667 12.53 0.00 0.00 2.66
2238 2871 4.867047 CAGTAGAGCAGGTACATGAACTTG 59.133 45.833 12.53 2.35 0.00 3.16
2244 2877 4.410492 CAGGTACATGAACTTGCACTTC 57.590 45.455 0.00 0.00 0.00 3.01
2245 2878 3.189287 CAGGTACATGAACTTGCACTTCC 59.811 47.826 0.00 0.00 0.00 3.46
2246 2879 3.146066 GGTACATGAACTTGCACTTCCA 58.854 45.455 0.00 0.00 0.00 3.53
2247 2880 3.568007 GGTACATGAACTTGCACTTCCAA 59.432 43.478 0.00 0.00 0.00 3.53
2248 2881 3.715628 ACATGAACTTGCACTTCCAAC 57.284 42.857 0.00 0.00 0.00 3.77
2249 2882 3.290710 ACATGAACTTGCACTTCCAACT 58.709 40.909 0.00 0.00 0.00 3.16
2250 2883 3.067180 ACATGAACTTGCACTTCCAACTG 59.933 43.478 0.00 0.00 0.00 3.16
2251 2884 2.722094 TGAACTTGCACTTCCAACTGT 58.278 42.857 0.00 0.00 0.00 3.55
2252 2885 3.879998 TGAACTTGCACTTCCAACTGTA 58.120 40.909 0.00 0.00 0.00 2.74
2253 2886 4.265893 TGAACTTGCACTTCCAACTGTAA 58.734 39.130 0.00 0.00 0.00 2.41
2254 2887 4.702612 TGAACTTGCACTTCCAACTGTAAA 59.297 37.500 0.00 0.00 0.00 2.01
2255 2888 4.900635 ACTTGCACTTCCAACTGTAAAG 57.099 40.909 0.00 0.00 0.00 1.85
2256 2889 4.523083 ACTTGCACTTCCAACTGTAAAGA 58.477 39.130 0.00 0.00 0.00 2.52
2257 2890 5.133221 ACTTGCACTTCCAACTGTAAAGAT 58.867 37.500 0.00 0.00 0.00 2.40
2258 2891 6.296026 ACTTGCACTTCCAACTGTAAAGATA 58.704 36.000 0.00 0.00 0.00 1.98
2259 2892 6.942576 ACTTGCACTTCCAACTGTAAAGATAT 59.057 34.615 0.00 0.00 0.00 1.63
2260 2893 6.985188 TGCACTTCCAACTGTAAAGATATC 57.015 37.500 0.00 0.00 0.00 1.63
2261 2894 6.472016 TGCACTTCCAACTGTAAAGATATCA 58.528 36.000 5.32 0.00 0.00 2.15
2262 2895 7.112122 TGCACTTCCAACTGTAAAGATATCAT 58.888 34.615 5.32 0.00 0.00 2.45
2263 2896 7.280876 TGCACTTCCAACTGTAAAGATATCATC 59.719 37.037 5.32 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.067273 CGGCCCAGTTCCATAATTAACATA 58.933 41.667 0.00 0.00 0.00 2.29
1 2 3.888930 CGGCCCAGTTCCATAATTAACAT 59.111 43.478 0.00 0.00 0.00 2.71
2 3 3.283751 CGGCCCAGTTCCATAATTAACA 58.716 45.455 0.00 0.00 0.00 2.41
3 4 3.284617 ACGGCCCAGTTCCATAATTAAC 58.715 45.455 0.00 0.00 0.00 2.01
4 5 3.655615 ACGGCCCAGTTCCATAATTAA 57.344 42.857 0.00 0.00 0.00 1.40
5 6 3.655615 AACGGCCCAGTTCCATAATTA 57.344 42.857 0.00 0.00 0.00 1.40
6 7 2.525105 AACGGCCCAGTTCCATAATT 57.475 45.000 0.00 0.00 0.00 1.40
7 8 2.525105 AAACGGCCCAGTTCCATAAT 57.475 45.000 0.00 0.00 32.43 1.28
8 9 3.244981 ACTTAAACGGCCCAGTTCCATAA 60.245 43.478 0.00 0.00 32.43 1.90
9 10 2.306512 ACTTAAACGGCCCAGTTCCATA 59.693 45.455 0.00 0.00 32.43 2.74
10 11 1.074889 ACTTAAACGGCCCAGTTCCAT 59.925 47.619 0.00 0.00 32.43 3.41
11 12 0.475044 ACTTAAACGGCCCAGTTCCA 59.525 50.000 0.00 0.00 32.43 3.53
12 13 0.879090 CACTTAAACGGCCCAGTTCC 59.121 55.000 0.00 0.00 32.43 3.62
13 14 0.879090 CCACTTAAACGGCCCAGTTC 59.121 55.000 0.00 0.00 32.43 3.01
14 15 0.475044 TCCACTTAAACGGCCCAGTT 59.525 50.000 0.00 0.00 35.59 3.16
15 16 0.696501 ATCCACTTAAACGGCCCAGT 59.303 50.000 0.00 0.00 0.00 4.00
16 17 1.834188 AATCCACTTAAACGGCCCAG 58.166 50.000 0.00 0.00 0.00 4.45
17 18 2.713877 GTAATCCACTTAAACGGCCCA 58.286 47.619 0.00 0.00 0.00 5.36
18 19 1.667212 CGTAATCCACTTAAACGGCCC 59.333 52.381 0.00 0.00 0.00 5.80
19 20 1.667212 CCGTAATCCACTTAAACGGCC 59.333 52.381 0.00 0.00 45.56 6.13
22 23 4.092383 CCAGTTCCGTAATCCACTTAAACG 59.908 45.833 0.00 0.00 0.00 3.60
23 24 4.393990 CCCAGTTCCGTAATCCACTTAAAC 59.606 45.833 0.00 0.00 0.00 2.01
24 25 4.581868 CCCAGTTCCGTAATCCACTTAAA 58.418 43.478 0.00 0.00 0.00 1.52
25 26 3.620472 GCCCAGTTCCGTAATCCACTTAA 60.620 47.826 0.00 0.00 0.00 1.85
26 27 2.093341 GCCCAGTTCCGTAATCCACTTA 60.093 50.000 0.00 0.00 0.00 2.24
27 28 1.339727 GCCCAGTTCCGTAATCCACTT 60.340 52.381 0.00 0.00 0.00 3.16
28 29 0.252197 GCCCAGTTCCGTAATCCACT 59.748 55.000 0.00 0.00 0.00 4.00
29 30 0.746923 GGCCCAGTTCCGTAATCCAC 60.747 60.000 0.00 0.00 0.00 4.02
30 31 1.605453 GGCCCAGTTCCGTAATCCA 59.395 57.895 0.00 0.00 0.00 3.41
31 32 1.523032 CGGCCCAGTTCCGTAATCC 60.523 63.158 0.00 0.00 41.85 3.01
32 33 4.120085 CGGCCCAGTTCCGTAATC 57.880 61.111 0.00 0.00 41.85 1.75
38 39 1.362355 CACAAAACGGCCCAGTTCC 59.638 57.895 0.00 0.00 32.43 3.62
39 40 1.362355 CCACAAAACGGCCCAGTTC 59.638 57.895 0.00 0.00 32.43 3.01
40 41 2.791868 GCCACAAAACGGCCCAGTT 61.792 57.895 0.00 0.00 44.22 3.16
41 42 3.223589 GCCACAAAACGGCCCAGT 61.224 61.111 0.00 0.00 44.22 4.00
47 48 2.330041 GTCACGGCCACAAAACGG 59.670 61.111 2.24 0.00 0.00 4.44
48 49 2.330041 GGTCACGGCCACAAAACG 59.670 61.111 2.24 0.00 0.00 3.60
49 50 2.725641 GGGTCACGGCCACAAAAC 59.274 61.111 2.24 0.00 0.00 2.43
50 51 1.706995 TAGGGGTCACGGCCACAAAA 61.707 55.000 2.24 0.00 33.41 2.44
51 52 1.706995 TTAGGGGTCACGGCCACAAA 61.707 55.000 2.24 0.00 33.41 2.83
52 53 1.706995 TTTAGGGGTCACGGCCACAA 61.707 55.000 2.24 0.00 33.41 3.33
53 54 1.493854 ATTTAGGGGTCACGGCCACA 61.494 55.000 2.24 0.00 33.41 4.17
54 55 0.542805 TATTTAGGGGTCACGGCCAC 59.457 55.000 2.24 0.00 0.00 5.01
55 56 1.142060 CATATTTAGGGGTCACGGCCA 59.858 52.381 2.24 0.00 0.00 5.36
56 57 1.142262 ACATATTTAGGGGTCACGGCC 59.858 52.381 0.00 0.00 0.00 6.13
57 58 2.632987 ACATATTTAGGGGTCACGGC 57.367 50.000 0.00 0.00 0.00 5.68
58 59 6.600427 ACTTAAAACATATTTAGGGGTCACGG 59.400 38.462 0.00 0.00 0.00 4.94
59 60 7.619964 ACTTAAAACATATTTAGGGGTCACG 57.380 36.000 0.00 0.00 0.00 4.35
93 94 8.460831 AATGCCTAAAAAGTAAATAAACGCAG 57.539 30.769 0.00 0.00 0.00 5.18
94 95 8.819643 AAATGCCTAAAAAGTAAATAAACGCA 57.180 26.923 0.00 0.00 0.00 5.24
130 131 2.807392 GTCGGGTGGACGTGATTAAAAA 59.193 45.455 0.00 0.00 35.61 1.94
131 132 2.415776 GTCGGGTGGACGTGATTAAAA 58.584 47.619 0.00 0.00 35.61 1.52
132 133 2.083167 GTCGGGTGGACGTGATTAAA 57.917 50.000 0.00 0.00 35.61 1.52
133 134 3.818586 GTCGGGTGGACGTGATTAA 57.181 52.632 0.00 0.00 35.61 1.40
141 142 1.539827 CCAAAATCTTGTCGGGTGGAC 59.460 52.381 0.00 0.00 46.27 4.02
142 143 1.546773 CCCAAAATCTTGTCGGGTGGA 60.547 52.381 0.00 0.00 31.80 4.02
143 144 0.887933 CCCAAAATCTTGTCGGGTGG 59.112 55.000 0.00 0.00 31.80 4.61
146 147 0.243636 GCACCCAAAATCTTGTCGGG 59.756 55.000 0.00 0.00 43.02 5.14
147 148 0.109781 CGCACCCAAAATCTTGTCGG 60.110 55.000 0.00 0.00 0.00 4.79
148 149 0.109781 CCGCACCCAAAATCTTGTCG 60.110 55.000 0.00 0.00 0.00 4.35
149 150 0.388520 GCCGCACCCAAAATCTTGTC 60.389 55.000 0.00 0.00 0.00 3.18
150 151 1.665442 GCCGCACCCAAAATCTTGT 59.335 52.632 0.00 0.00 0.00 3.16
151 152 1.079888 GGCCGCACCCAAAATCTTG 60.080 57.895 0.00 0.00 0.00 3.02
152 153 2.635443 CGGCCGCACCCAAAATCTT 61.635 57.895 14.67 0.00 33.26 2.40
153 154 3.061848 CGGCCGCACCCAAAATCT 61.062 61.111 14.67 0.00 33.26 2.40
154 155 4.794439 GCGGCCGCACCCAAAATC 62.794 66.667 43.55 11.09 41.49 2.17
174 175 3.116531 GTCGTGGGTGCGCCTAAC 61.117 66.667 17.49 13.86 34.45 2.34
175 176 4.382320 GGTCGTGGGTGCGCCTAA 62.382 66.667 17.49 1.71 34.45 2.69
182 183 3.931247 TCCGTTGGGTCGTGGGTG 61.931 66.667 0.00 0.00 33.83 4.61
183 184 3.932483 GTCCGTTGGGTCGTGGGT 61.932 66.667 0.00 0.00 33.83 4.51
184 185 2.944409 TTTGTCCGTTGGGTCGTGGG 62.944 60.000 0.00 0.00 33.83 4.61
185 186 1.524165 TTTGTCCGTTGGGTCGTGG 60.524 57.895 0.00 0.00 33.83 4.94
186 187 1.090625 TGTTTGTCCGTTGGGTCGTG 61.091 55.000 0.00 0.00 33.83 4.35
187 188 1.091197 GTGTTTGTCCGTTGGGTCGT 61.091 55.000 0.00 0.00 33.83 4.34
188 189 1.644913 GTGTTTGTCCGTTGGGTCG 59.355 57.895 0.00 0.00 33.83 4.79
189 190 1.644913 CGTGTTTGTCCGTTGGGTC 59.355 57.895 0.00 0.00 33.83 4.46
190 191 1.820481 CCGTGTTTGTCCGTTGGGT 60.820 57.895 0.00 0.00 33.83 4.51
191 192 1.524165 TCCGTGTTTGTCCGTTGGG 60.524 57.895 0.00 0.00 0.00 4.12
192 193 1.090625 TGTCCGTGTTTGTCCGTTGG 61.091 55.000 0.00 0.00 0.00 3.77
193 194 0.941542 ATGTCCGTGTTTGTCCGTTG 59.058 50.000 0.00 0.00 0.00 4.10
194 195 0.941542 CATGTCCGTGTTTGTCCGTT 59.058 50.000 0.00 0.00 0.00 4.44
195 196 0.882927 CCATGTCCGTGTTTGTCCGT 60.883 55.000 0.00 0.00 0.00 4.69
196 197 1.573829 CCCATGTCCGTGTTTGTCCG 61.574 60.000 0.00 0.00 0.00 4.79
197 198 1.862602 GCCCATGTCCGTGTTTGTCC 61.863 60.000 0.00 0.00 0.00 4.02
198 199 1.579429 GCCCATGTCCGTGTTTGTC 59.421 57.895 0.00 0.00 0.00 3.18
199 200 2.258013 CGCCCATGTCCGTGTTTGT 61.258 57.895 0.00 0.00 0.00 2.83
200 201 1.511318 TTCGCCCATGTCCGTGTTTG 61.511 55.000 0.00 0.00 0.00 2.93
201 202 1.228003 TTCGCCCATGTCCGTGTTT 60.228 52.632 0.00 0.00 0.00 2.83
202 203 1.964373 GTTCGCCCATGTCCGTGTT 60.964 57.895 0.00 0.00 0.00 3.32
203 204 2.358247 GTTCGCCCATGTCCGTGT 60.358 61.111 0.00 0.00 0.00 4.49
204 205 3.124921 GGTTCGCCCATGTCCGTG 61.125 66.667 0.00 0.00 0.00 4.94
225 226 4.697756 TGTCCCTTTGAGGCGGCG 62.698 66.667 0.51 0.51 32.73 6.46
226 227 1.460273 TTTTGTCCCTTTGAGGCGGC 61.460 55.000 0.00 0.00 32.73 6.53
227 228 1.202348 GATTTTGTCCCTTTGAGGCGG 59.798 52.381 0.00 0.00 32.73 6.13
228 229 1.202348 GGATTTTGTCCCTTTGAGGCG 59.798 52.381 0.00 0.00 41.50 5.52
229 230 1.202348 CGGATTTTGTCCCTTTGAGGC 59.798 52.381 0.00 0.00 44.77 4.70
230 231 1.818674 CCGGATTTTGTCCCTTTGAGG 59.181 52.381 0.00 0.00 44.77 3.86
231 232 2.488153 GACCGGATTTTGTCCCTTTGAG 59.512 50.000 9.46 0.00 44.77 3.02
232 233 2.510613 GACCGGATTTTGTCCCTTTGA 58.489 47.619 9.46 0.00 44.77 2.69
233 234 1.544246 GGACCGGATTTTGTCCCTTTG 59.456 52.381 9.46 0.00 44.32 2.77
234 235 1.884928 CGGACCGGATTTTGTCCCTTT 60.885 52.381 9.46 0.00 46.78 3.11
235 236 0.322187 CGGACCGGATTTTGTCCCTT 60.322 55.000 9.46 0.00 46.78 3.95
236 237 1.298667 CGGACCGGATTTTGTCCCT 59.701 57.895 9.46 0.00 46.78 4.20
237 238 0.607217 AACGGACCGGATTTTGTCCC 60.607 55.000 20.00 0.00 46.78 4.46
238 239 1.068816 CAAACGGACCGGATTTTGTCC 60.069 52.381 20.00 1.51 46.15 4.02
239 240 1.068816 CCAAACGGACCGGATTTTGTC 60.069 52.381 20.00 0.00 0.00 3.18
240 241 0.955905 CCAAACGGACCGGATTTTGT 59.044 50.000 20.00 0.00 0.00 2.83
241 242 0.242555 CCCAAACGGACCGGATTTTG 59.757 55.000 20.00 18.33 0.00 2.44
242 243 0.110869 TCCCAAACGGACCGGATTTT 59.889 50.000 20.00 7.00 34.86 1.82
243 244 0.322187 CTCCCAAACGGACCGGATTT 60.322 55.000 20.00 7.78 34.86 2.17
244 245 1.298667 CTCCCAAACGGACCGGATT 59.701 57.895 20.00 10.13 34.86 3.01
245 246 1.896122 GACTCCCAAACGGACCGGAT 61.896 60.000 20.00 3.40 34.86 4.18
246 247 2.524887 ACTCCCAAACGGACCGGA 60.525 61.111 20.00 4.14 34.86 5.14
247 248 2.047560 GACTCCCAAACGGACCGG 60.048 66.667 20.00 0.00 34.86 5.28
248 249 1.019278 CATGACTCCCAAACGGACCG 61.019 60.000 13.61 13.61 34.86 4.79
249 250 1.305930 GCATGACTCCCAAACGGACC 61.306 60.000 0.00 0.00 34.86 4.46
250 251 1.635663 CGCATGACTCCCAAACGGAC 61.636 60.000 0.00 0.00 34.86 4.79
251 252 1.375396 CGCATGACTCCCAAACGGA 60.375 57.895 0.00 0.00 38.83 4.69
252 253 2.398554 CCGCATGACTCCCAAACGG 61.399 63.158 0.00 0.00 39.71 4.44
253 254 1.671054 ACCGCATGACTCCCAAACG 60.671 57.895 0.00 0.00 0.00 3.60
254 255 1.586154 CCACCGCATGACTCCCAAAC 61.586 60.000 0.00 0.00 0.00 2.93
255 256 1.303236 CCACCGCATGACTCCCAAA 60.303 57.895 0.00 0.00 0.00 3.28
256 257 1.773856 TTCCACCGCATGACTCCCAA 61.774 55.000 0.00 0.00 0.00 4.12
257 258 1.561769 ATTCCACCGCATGACTCCCA 61.562 55.000 0.00 0.00 0.00 4.37
258 259 0.394352 AATTCCACCGCATGACTCCC 60.394 55.000 0.00 0.00 0.00 4.30
259 260 0.734889 CAATTCCACCGCATGACTCC 59.265 55.000 0.00 0.00 0.00 3.85
260 261 0.734889 CCAATTCCACCGCATGACTC 59.265 55.000 0.00 0.00 0.00 3.36
261 262 1.315257 GCCAATTCCACCGCATGACT 61.315 55.000 0.00 0.00 0.00 3.41
262 263 1.139520 GCCAATTCCACCGCATGAC 59.860 57.895 0.00 0.00 0.00 3.06
263 264 2.051518 GGCCAATTCCACCGCATGA 61.052 57.895 0.00 0.00 0.00 3.07
264 265 2.008268 GAGGCCAATTCCACCGCATG 62.008 60.000 5.01 0.00 0.00 4.06
265 266 1.754234 GAGGCCAATTCCACCGCAT 60.754 57.895 5.01 0.00 0.00 4.73
266 267 2.361104 GAGGCCAATTCCACCGCA 60.361 61.111 5.01 0.00 0.00 5.69
267 268 2.361104 TGAGGCCAATTCCACCGC 60.361 61.111 5.01 0.00 0.00 5.68
268 269 1.002134 AGTGAGGCCAATTCCACCG 60.002 57.895 5.01 0.00 0.00 4.94
269 270 0.967380 CCAGTGAGGCCAATTCCACC 60.967 60.000 5.01 0.00 0.00 4.61
270 271 2.571548 CCAGTGAGGCCAATTCCAC 58.428 57.895 5.01 4.81 0.00 4.02
301 302 2.512896 TCGTCCTCCTCATAGGTACCTT 59.487 50.000 22.11 5.20 37.91 3.50
314 315 0.109039 GTCACAAGAGCTCGTCCTCC 60.109 60.000 8.37 0.00 32.17 4.30
342 346 1.868997 CGGTTCATTCTGCGTGCTT 59.131 52.632 0.00 0.00 0.00 3.91
354 358 1.292223 GGTGCTAGACTGCGGTTCA 59.708 57.895 0.00 0.00 35.36 3.18
358 362 0.517316 GTTTTGGTGCTAGACTGCGG 59.483 55.000 0.00 0.00 35.36 5.69
394 398 0.179078 TTGTATATCCGCCGCCGTTT 60.179 50.000 0.00 0.00 0.00 3.60
404 413 2.433436 GCCACCGGGATTTGTATATCC 58.567 52.381 6.32 0.00 42.84 2.59
406 415 1.271163 CGGCCACCGGGATTTGTATAT 60.271 52.381 6.32 0.00 44.15 0.86
407 416 0.107081 CGGCCACCGGGATTTGTATA 59.893 55.000 6.32 0.00 44.15 1.47
526 535 2.662070 GGGATCGGGTTCACGGGAA 61.662 63.158 0.00 0.00 0.00 3.97
619 629 0.687757 TCTCTAGCTTGGCCCGTGAT 60.688 55.000 0.00 0.00 0.00 3.06
642 652 2.548493 GCAAAACACCCTGGACGTACTA 60.548 50.000 0.00 0.00 0.00 1.82
643 653 1.812708 GCAAAACACCCTGGACGTACT 60.813 52.381 0.00 0.00 0.00 2.73
683 710 0.674895 AAGTGCTGTGCGATTCTCCC 60.675 55.000 0.00 0.00 0.00 4.30
691 718 0.796312 ACGGAATTAAGTGCTGTGCG 59.204 50.000 0.00 0.00 0.00 5.34
725 849 4.804665 GCCAGTCTAAGTTCGAACCTAATC 59.195 45.833 24.22 12.43 0.00 1.75
810 1087 3.119065 TGTTTTATACCGTGATGAGGCGA 60.119 43.478 0.00 0.00 0.00 5.54
811 1088 3.000925 GTGTTTTATACCGTGATGAGGCG 59.999 47.826 0.00 0.00 0.00 5.52
812 1089 3.311596 GGTGTTTTATACCGTGATGAGGC 59.688 47.826 0.00 0.00 0.00 4.70
817 1094 2.908916 CGGGGTGTTTTATACCGTGAT 58.091 47.619 0.00 0.00 39.14 3.06
885 1165 1.589196 GATCGGTCGGTGCTACTGC 60.589 63.158 0.00 0.00 40.20 4.40
916 1201 4.024472 GCTTCTTGCTGCTTATAGCTAACC 60.024 45.833 0.00 0.00 42.97 2.85
921 1206 3.605743 CTGCTTCTTGCTGCTTATAGC 57.394 47.619 0.00 5.88 43.95 2.97
948 1233 4.700365 TCGCACGAGCACACCGAG 62.700 66.667 5.50 0.00 42.27 4.63
951 1236 2.738521 ATGTCGCACGAGCACACC 60.739 61.111 5.50 0.00 42.27 4.16
953 1238 2.738139 CCATGTCGCACGAGCACA 60.738 61.111 5.50 8.87 42.27 4.57
954 1239 4.152625 GCCATGTCGCACGAGCAC 62.153 66.667 5.50 3.26 42.27 4.40
999 1284 2.579787 GCGACGAGGACGACCATG 60.580 66.667 6.71 0.03 42.66 3.66
1282 1594 1.339151 GGACAGGACAGATGTTGGGAC 60.339 57.143 0.00 0.00 0.00 4.46
1283 1595 0.984230 GGACAGGACAGATGTTGGGA 59.016 55.000 0.00 0.00 0.00 4.37
1284 1596 0.987294 AGGACAGGACAGATGTTGGG 59.013 55.000 0.00 0.00 0.00 4.12
1285 1597 1.065854 GGAGGACAGGACAGATGTTGG 60.066 57.143 0.00 0.00 0.00 3.77
1286 1598 1.905215 AGGAGGACAGGACAGATGTTG 59.095 52.381 0.00 0.00 0.00 3.33
1287 1599 1.905215 CAGGAGGACAGGACAGATGTT 59.095 52.381 0.00 0.00 0.00 2.71
1288 1600 1.566211 CAGGAGGACAGGACAGATGT 58.434 55.000 0.00 0.00 0.00 3.06
1289 1601 0.829333 CCAGGAGGACAGGACAGATG 59.171 60.000 0.00 0.00 36.89 2.90
1290 1602 0.415429 ACCAGGAGGACAGGACAGAT 59.585 55.000 0.00 0.00 38.69 2.90
1291 1603 0.542938 CACCAGGAGGACAGGACAGA 60.543 60.000 0.00 0.00 38.69 3.41
1292 1604 0.833834 ACACCAGGAGGACAGGACAG 60.834 60.000 0.00 0.00 38.69 3.51
1293 1605 0.832135 GACACCAGGAGGACAGGACA 60.832 60.000 0.00 0.00 38.69 4.02
1294 1606 1.545706 GGACACCAGGAGGACAGGAC 61.546 65.000 0.00 0.00 38.69 3.85
1295 1607 1.229209 GGACACCAGGAGGACAGGA 60.229 63.158 0.00 0.00 38.69 3.86
1296 1608 2.294078 GGGACACCAGGAGGACAGG 61.294 68.421 0.00 0.00 38.69 4.00
1323 1641 0.879839 TGTACCGCATGCATCATCGG 60.880 55.000 22.63 22.63 39.00 4.18
1324 1642 0.936600 TTGTACCGCATGCATCATCG 59.063 50.000 19.57 0.46 0.00 3.84
1385 1703 4.152938 CGACAAGATGGGCACATGTATATG 59.847 45.833 5.94 0.00 37.47 1.78
1472 1794 3.288242 GCAATGTTTACACACAGACACG 58.712 45.455 0.00 0.00 35.03 4.49
1485 1807 6.160576 ACATTTGAAGTAGTGGCAATGTTT 57.839 33.333 0.00 0.00 0.00 2.83
1509 1835 6.657117 ACCACATACACATGTATAAAGTGCAA 59.343 34.615 12.22 0.00 43.73 4.08
1538 1865 7.801547 TTAACCTCGAAGTAGATTGTTTACG 57.198 36.000 0.00 0.00 0.00 3.18
1556 1883 5.687166 TCTGTCGGTGGATTAATTAACCT 57.313 39.130 14.95 0.00 0.00 3.50
1585 1913 4.742167 CACTGTTGTGAGCGATAAGATAGG 59.258 45.833 0.00 0.00 46.55 2.57
1657 1985 6.164176 TCGAACTTTTAGATCTGACCCTTTC 58.836 40.000 5.18 0.63 0.00 2.62
1680 2017 8.227791 TGCTTTGTACTTCGAATGAACTTATTC 58.772 33.333 0.00 0.00 34.48 1.75
1681 2018 8.094798 TGCTTTGTACTTCGAATGAACTTATT 57.905 30.769 0.00 0.00 0.00 1.40
1682 2019 7.667043 TGCTTTGTACTTCGAATGAACTTAT 57.333 32.000 0.00 0.00 0.00 1.73
1683 2020 7.602644 AGATGCTTTGTACTTCGAATGAACTTA 59.397 33.333 0.00 0.00 0.00 2.24
1684 2021 6.428159 AGATGCTTTGTACTTCGAATGAACTT 59.572 34.615 0.00 0.00 0.00 2.66
1685 2022 5.934625 AGATGCTTTGTACTTCGAATGAACT 59.065 36.000 0.00 0.00 0.00 3.01
1686 2023 6.128553 TGAGATGCTTTGTACTTCGAATGAAC 60.129 38.462 0.00 0.00 0.00 3.18
1725 2062 9.123902 CATTTGATGGTCTGGAAATAGATGTAA 57.876 33.333 0.00 0.00 0.00 2.41
1726 2063 8.493607 TCATTTGATGGTCTGGAAATAGATGTA 58.506 33.333 0.00 0.00 0.00 2.29
1727 2064 7.284034 GTCATTTGATGGTCTGGAAATAGATGT 59.716 37.037 0.00 0.00 0.00 3.06
1729 2066 7.580910 AGTCATTTGATGGTCTGGAAATAGAT 58.419 34.615 0.00 0.00 0.00 1.98
1730 2067 6.962182 AGTCATTTGATGGTCTGGAAATAGA 58.038 36.000 0.00 0.00 0.00 1.98
1731 2068 7.989741 AGTAGTCATTTGATGGTCTGGAAATAG 59.010 37.037 0.00 0.00 0.00 1.73
1732 2069 7.770433 CAGTAGTCATTTGATGGTCTGGAAATA 59.230 37.037 0.00 0.00 0.00 1.40
1733 2070 6.600822 CAGTAGTCATTTGATGGTCTGGAAAT 59.399 38.462 0.00 0.00 0.00 2.17
1734 2071 5.939883 CAGTAGTCATTTGATGGTCTGGAAA 59.060 40.000 0.00 0.00 0.00 3.13
1736 2073 4.623886 GCAGTAGTCATTTGATGGTCTGGA 60.624 45.833 0.00 0.00 0.00 3.86
1737 2074 3.624861 GCAGTAGTCATTTGATGGTCTGG 59.375 47.826 0.00 0.00 0.00 3.86
1738 2075 4.511527 AGCAGTAGTCATTTGATGGTCTG 58.488 43.478 0.00 0.00 0.00 3.51
1739 2076 4.833478 AGCAGTAGTCATTTGATGGTCT 57.167 40.909 0.00 0.00 0.00 3.85
1740 2077 6.512415 GCAATAGCAGTAGTCATTTGATGGTC 60.512 42.308 0.00 0.00 41.58 4.02
1741 2078 5.297776 GCAATAGCAGTAGTCATTTGATGGT 59.702 40.000 0.00 0.00 41.58 3.55
1742 2079 5.278169 GGCAATAGCAGTAGTCATTTGATGG 60.278 44.000 0.00 0.00 44.61 3.51
1744 2081 5.439721 TGGCAATAGCAGTAGTCATTTGAT 58.560 37.500 0.00 0.00 44.61 2.57
1746 2083 4.877823 TCTGGCAATAGCAGTAGTCATTTG 59.122 41.667 0.00 0.00 44.61 2.32
1747 2084 5.102953 TCTGGCAATAGCAGTAGTCATTT 57.897 39.130 0.00 0.00 44.61 2.32
1751 2088 2.860735 CGTTCTGGCAATAGCAGTAGTC 59.139 50.000 0.00 0.00 44.61 2.59
1752 2089 2.496070 TCGTTCTGGCAATAGCAGTAGT 59.504 45.455 0.00 0.00 44.61 2.73
1753 2090 3.119291 CTCGTTCTGGCAATAGCAGTAG 58.881 50.000 0.00 0.00 44.61 2.57
1755 2092 2.009042 GCTCGTTCTGGCAATAGCAGT 61.009 52.381 0.00 0.00 44.61 4.40
1756 2093 0.654683 GCTCGTTCTGGCAATAGCAG 59.345 55.000 0.00 0.00 44.61 4.24
1757 2094 0.744414 GGCTCGTTCTGGCAATAGCA 60.744 55.000 0.00 0.00 44.61 3.49
1758 2095 0.744414 TGGCTCGTTCTGGCAATAGC 60.744 55.000 0.00 0.00 37.05 2.97
1759 2096 1.959042 ATGGCTCGTTCTGGCAATAG 58.041 50.000 0.00 0.00 43.05 1.73
1760 2097 2.016318 CAATGGCTCGTTCTGGCAATA 58.984 47.619 0.00 0.00 43.05 1.90
1762 2099 0.537143 ACAATGGCTCGTTCTGGCAA 60.537 50.000 0.00 0.00 43.05 4.52
1764 2101 1.398390 CTAACAATGGCTCGTTCTGGC 59.602 52.381 0.00 0.00 0.00 4.85
1765 2102 2.416547 CACTAACAATGGCTCGTTCTGG 59.583 50.000 0.00 0.00 0.00 3.86
1766 2103 3.325870 TCACTAACAATGGCTCGTTCTG 58.674 45.455 0.00 0.00 0.00 3.02
1768 2105 6.604735 AATATCACTAACAATGGCTCGTTC 57.395 37.500 0.00 0.00 0.00 3.95
1769 2106 6.183360 CCAAATATCACTAACAATGGCTCGTT 60.183 38.462 0.00 0.00 0.00 3.85
1770 2107 5.296780 CCAAATATCACTAACAATGGCTCGT 59.703 40.000 0.00 0.00 0.00 4.18
1771 2108 5.277974 CCCAAATATCACTAACAATGGCTCG 60.278 44.000 0.00 0.00 0.00 5.03
1772 2109 5.594317 ACCCAAATATCACTAACAATGGCTC 59.406 40.000 0.00 0.00 0.00 4.70
1773 2110 5.360714 CACCCAAATATCACTAACAATGGCT 59.639 40.000 0.00 0.00 0.00 4.75
1775 2112 7.403312 TTCACCCAAATATCACTAACAATGG 57.597 36.000 0.00 0.00 0.00 3.16
1776 2113 9.874205 ATTTTCACCCAAATATCACTAACAATG 57.126 29.630 0.00 0.00 0.00 2.82
1777 2114 9.874205 CATTTTCACCCAAATATCACTAACAAT 57.126 29.630 0.00 0.00 0.00 2.71
1778 2115 8.865090 ACATTTTCACCCAAATATCACTAACAA 58.135 29.630 0.00 0.00 0.00 2.83
1779 2116 8.415950 ACATTTTCACCCAAATATCACTAACA 57.584 30.769 0.00 0.00 0.00 2.41
1780 2117 7.696453 CGACATTTTCACCCAAATATCACTAAC 59.304 37.037 0.00 0.00 0.00 2.34
1781 2118 7.148154 CCGACATTTTCACCCAAATATCACTAA 60.148 37.037 0.00 0.00 0.00 2.24
1782 2119 6.317642 CCGACATTTTCACCCAAATATCACTA 59.682 38.462 0.00 0.00 0.00 2.74
1785 2122 4.142271 GCCGACATTTTCACCCAAATATCA 60.142 41.667 0.00 0.00 0.00 2.15
1786 2123 4.359706 GCCGACATTTTCACCCAAATATC 58.640 43.478 0.00 0.00 0.00 1.63
1788 2125 2.162608 CGCCGACATTTTCACCCAAATA 59.837 45.455 0.00 0.00 0.00 1.40
1790 2127 0.312416 CGCCGACATTTTCACCCAAA 59.688 50.000 0.00 0.00 0.00 3.28
1796 2428 3.059386 GGGCCGCCGACATTTTCA 61.059 61.111 2.55 0.00 0.00 2.69
1814 2446 5.825593 TTGTTTCTTGGTCCTCATCTACT 57.174 39.130 0.00 0.00 0.00 2.57
1819 2451 6.923199 ATTCATTTGTTTCTTGGTCCTCAT 57.077 33.333 0.00 0.00 0.00 2.90
1821 2453 7.209475 TCAAATTCATTTGTTTCTTGGTCCTC 58.791 34.615 11.21 0.00 45.49 3.71
1822 2454 7.123355 TCAAATTCATTTGTTTCTTGGTCCT 57.877 32.000 11.21 0.00 45.49 3.85
1823 2455 6.073602 GCTCAAATTCATTTGTTTCTTGGTCC 60.074 38.462 11.21 0.00 45.49 4.46
1824 2456 6.703165 AGCTCAAATTCATTTGTTTCTTGGTC 59.297 34.615 11.21 0.00 45.49 4.02
1825 2457 6.585416 AGCTCAAATTCATTTGTTTCTTGGT 58.415 32.000 11.21 1.71 45.49 3.67
1826 2458 8.592105 TTAGCTCAAATTCATTTGTTTCTTGG 57.408 30.769 11.21 0.00 45.49 3.61
1875 2508 6.013085 CACTGTTAAAATGTCCACGTAATCG 58.987 40.000 0.00 0.00 43.34 3.34
1880 2513 5.124138 TCAAACACTGTTAAAATGTCCACGT 59.876 36.000 0.00 0.00 0.00 4.49
1882 2515 8.419076 AAATCAAACACTGTTAAAATGTCCAC 57.581 30.769 0.00 0.00 0.00 4.02
1893 2526 9.946165 GTAGCTAGTTTAAAATCAAACACTGTT 57.054 29.630 0.00 0.00 40.22 3.16
1894 2527 9.116067 TGTAGCTAGTTTAAAATCAAACACTGT 57.884 29.630 0.00 0.00 40.22 3.55
1906 2539 9.188588 CCGATCGAAATATGTAGCTAGTTTAAA 57.811 33.333 18.66 0.00 0.00 1.52
1907 2540 7.327761 GCCGATCGAAATATGTAGCTAGTTTAA 59.672 37.037 18.66 0.00 0.00 1.52
1908 2541 6.805271 GCCGATCGAAATATGTAGCTAGTTTA 59.195 38.462 18.66 0.00 0.00 2.01
1910 2543 5.162075 GCCGATCGAAATATGTAGCTAGTT 58.838 41.667 18.66 0.00 0.00 2.24
1911 2544 4.217767 TGCCGATCGAAATATGTAGCTAGT 59.782 41.667 18.66 0.00 0.00 2.57
1912 2545 4.733850 TGCCGATCGAAATATGTAGCTAG 58.266 43.478 18.66 0.00 0.00 3.42
1913 2546 4.217767 ACTGCCGATCGAAATATGTAGCTA 59.782 41.667 18.66 0.00 0.00 3.32
1914 2547 3.005897 ACTGCCGATCGAAATATGTAGCT 59.994 43.478 18.66 0.00 0.00 3.32
1915 2548 3.318017 ACTGCCGATCGAAATATGTAGC 58.682 45.455 18.66 8.49 0.00 3.58
1916 2549 5.918576 TGTAACTGCCGATCGAAATATGTAG 59.081 40.000 18.66 9.88 0.00 2.74
1919 2552 5.651172 TTGTAACTGCCGATCGAAATATG 57.349 39.130 18.66 0.00 0.00 1.78
1920 2553 5.276678 CGTTTGTAACTGCCGATCGAAATAT 60.277 40.000 18.66 2.23 0.00 1.28
1923 2556 2.156117 CGTTTGTAACTGCCGATCGAAA 59.844 45.455 18.66 3.33 0.00 3.46
1925 2558 1.342555 CGTTTGTAACTGCCGATCGA 58.657 50.000 18.66 0.00 0.00 3.59
1926 2559 0.247145 GCGTTTGTAACTGCCGATCG 60.247 55.000 8.51 8.51 0.00 3.69
1927 2560 0.247145 CGCGTTTGTAACTGCCGATC 60.247 55.000 0.00 0.00 0.00 3.69
1929 2562 1.592131 ACGCGTTTGTAACTGCCGA 60.592 52.632 5.58 0.00 0.00 5.54
1930 2563 1.438059 CACGCGTTTGTAACTGCCG 60.438 57.895 10.22 0.00 0.00 5.69
1931 2564 0.305313 TTCACGCGTTTGTAACTGCC 59.695 50.000 10.22 0.00 0.00 4.85
1953 2586 1.877443 ACAGGCGCTTACATCGTTTTT 59.123 42.857 7.64 0.00 0.00 1.94
1954 2587 1.196808 CACAGGCGCTTACATCGTTTT 59.803 47.619 7.64 0.00 0.00 2.43
1955 2588 0.796312 CACAGGCGCTTACATCGTTT 59.204 50.000 7.64 0.00 0.00 3.60
1956 2589 0.320421 ACACAGGCGCTTACATCGTT 60.320 50.000 7.64 0.00 0.00 3.85
1957 2590 0.320421 AACACAGGCGCTTACATCGT 60.320 50.000 7.64 0.00 0.00 3.73
1958 2591 0.370273 GAACACAGGCGCTTACATCG 59.630 55.000 7.64 0.00 0.00 3.84
1959 2592 1.394917 CAGAACACAGGCGCTTACATC 59.605 52.381 7.64 0.00 0.00 3.06
1960 2593 1.270839 ACAGAACACAGGCGCTTACAT 60.271 47.619 7.64 0.00 0.00 2.29
1961 2594 0.105964 ACAGAACACAGGCGCTTACA 59.894 50.000 7.64 0.00 0.00 2.41
1962 2595 1.226746 AACAGAACACAGGCGCTTAC 58.773 50.000 7.64 0.00 0.00 2.34
1963 2596 1.871039 GAAACAGAACACAGGCGCTTA 59.129 47.619 7.64 0.00 0.00 3.09
1964 2597 0.663153 GAAACAGAACACAGGCGCTT 59.337 50.000 7.64 0.00 0.00 4.68
1965 2598 0.463654 TGAAACAGAACACAGGCGCT 60.464 50.000 7.64 0.00 0.00 5.92
1966 2599 0.317020 GTGAAACAGAACACAGGCGC 60.317 55.000 0.00 0.00 37.05 6.53
1967 2600 1.013596 TGTGAAACAGAACACAGGCG 58.986 50.000 0.00 0.00 45.67 5.52
1999 2632 4.632153 AGTGTGTCGATCTAGCAGTTTTT 58.368 39.130 0.00 0.00 0.00 1.94
2000 2633 4.258702 AGTGTGTCGATCTAGCAGTTTT 57.741 40.909 0.00 0.00 0.00 2.43
2001 2634 3.944055 AGTGTGTCGATCTAGCAGTTT 57.056 42.857 0.00 0.00 0.00 2.66
2002 2635 3.944055 AAGTGTGTCGATCTAGCAGTT 57.056 42.857 0.00 0.00 0.00 3.16
2003 2636 5.278071 GCTATAAGTGTGTCGATCTAGCAGT 60.278 44.000 0.00 0.00 32.58 4.40
2004 2637 5.150683 GCTATAAGTGTGTCGATCTAGCAG 58.849 45.833 0.00 0.00 32.58 4.24
2005 2638 4.023107 GGCTATAAGTGTGTCGATCTAGCA 60.023 45.833 0.00 0.00 33.67 3.49
2006 2639 4.023107 TGGCTATAAGTGTGTCGATCTAGC 60.023 45.833 0.00 0.00 0.00 3.42
2007 2640 5.690997 TGGCTATAAGTGTGTCGATCTAG 57.309 43.478 0.00 0.00 0.00 2.43
2008 2641 6.459670 TTTGGCTATAAGTGTGTCGATCTA 57.540 37.500 0.00 0.00 0.00 1.98
2009 2642 5.339008 TTTGGCTATAAGTGTGTCGATCT 57.661 39.130 0.00 0.00 0.00 2.75
2010 2643 6.417191 TTTTTGGCTATAAGTGTGTCGATC 57.583 37.500 0.00 0.00 0.00 3.69
2032 2665 9.827198 TGGCCCTTGATAATATGATCTATTTTT 57.173 29.630 0.00 0.00 0.00 1.94
2033 2666 9.471702 CTGGCCCTTGATAATATGATCTATTTT 57.528 33.333 0.00 0.00 0.00 1.82
2034 2667 8.618385 ACTGGCCCTTGATAATATGATCTATTT 58.382 33.333 0.00 0.00 0.00 1.40
2035 2668 8.167691 ACTGGCCCTTGATAATATGATCTATT 57.832 34.615 0.00 0.00 0.00 1.73
2036 2669 7.761981 ACTGGCCCTTGATAATATGATCTAT 57.238 36.000 0.00 0.00 0.00 1.98
2037 2670 8.679344 TTACTGGCCCTTGATAATATGATCTA 57.321 34.615 0.00 0.00 0.00 1.98
2038 2671 7.574021 TTACTGGCCCTTGATAATATGATCT 57.426 36.000 0.00 0.00 0.00 2.75
2039 2672 7.225538 CGATTACTGGCCCTTGATAATATGATC 59.774 40.741 0.00 0.00 0.00 2.92
2040 2673 7.050377 CGATTACTGGCCCTTGATAATATGAT 58.950 38.462 0.00 0.00 0.00 2.45
2041 2674 6.013725 ACGATTACTGGCCCTTGATAATATGA 60.014 38.462 0.00 0.00 0.00 2.15
2042 2675 6.173339 ACGATTACTGGCCCTTGATAATATG 58.827 40.000 0.00 0.00 0.00 1.78
2043 2676 6.213600 AGACGATTACTGGCCCTTGATAATAT 59.786 38.462 0.00 0.00 0.00 1.28
2044 2677 5.542635 AGACGATTACTGGCCCTTGATAATA 59.457 40.000 0.00 0.00 0.00 0.98
2045 2678 4.348168 AGACGATTACTGGCCCTTGATAAT 59.652 41.667 0.00 0.00 0.00 1.28
2046 2679 3.709653 AGACGATTACTGGCCCTTGATAA 59.290 43.478 0.00 0.00 0.00 1.75
2047 2680 3.069586 CAGACGATTACTGGCCCTTGATA 59.930 47.826 0.00 0.00 0.00 2.15
2048 2681 2.119495 AGACGATTACTGGCCCTTGAT 58.881 47.619 0.00 0.00 0.00 2.57
2049 2682 1.207089 CAGACGATTACTGGCCCTTGA 59.793 52.381 0.00 0.00 0.00 3.02
2050 2683 1.066143 ACAGACGATTACTGGCCCTTG 60.066 52.381 0.00 0.00 39.38 3.61
2051 2684 1.207329 GACAGACGATTACTGGCCCTT 59.793 52.381 0.00 0.00 37.42 3.95
2052 2685 0.824759 GACAGACGATTACTGGCCCT 59.175 55.000 0.00 0.00 37.42 5.19
2053 2686 0.527817 CGACAGACGATTACTGGCCC 60.528 60.000 0.00 0.00 45.77 5.80
2054 2687 0.527817 CCGACAGACGATTACTGGCC 60.528 60.000 0.00 0.00 45.77 5.36
2055 2688 0.172803 ACCGACAGACGATTACTGGC 59.827 55.000 0.00 0.00 45.77 4.85
2065 2698 0.320771 ATTGGCACAGACCGACAGAC 60.321 55.000 0.00 0.00 42.39 3.51
2071 2704 2.048023 ATGGCATTGGCACAGACCG 61.048 57.895 15.84 0.00 41.84 4.79
2072 2705 1.252904 ACATGGCATTGGCACAGACC 61.253 55.000 15.84 0.00 41.84 3.85
2073 2706 0.171903 GACATGGCATTGGCACAGAC 59.828 55.000 15.84 7.96 41.84 3.51
2074 2707 0.038599 AGACATGGCATTGGCACAGA 59.961 50.000 15.84 0.00 41.84 3.41
2078 2711 1.107945 CATGAGACATGGCATTGGCA 58.892 50.000 15.86 15.86 43.71 4.92
2079 2712 0.249322 GCATGAGACATGGCATTGGC 60.249 55.000 0.00 2.73 40.13 4.52
2080 2713 0.387929 GGCATGAGACATGGCATTGG 59.612 55.000 25.51 0.00 43.15 3.16
2085 2718 1.751544 TGCTGGCATGAGACATGGC 60.752 57.895 24.33 24.33 43.83 4.40
2086 2719 1.381928 GGTGCTGGCATGAGACATGG 61.382 60.000 12.56 0.00 27.70 3.66
2087 2720 0.678684 TGGTGCTGGCATGAGACATG 60.679 55.000 0.00 7.29 27.70 3.21
2088 2721 0.038599 TTGGTGCTGGCATGAGACAT 59.961 50.000 0.00 0.00 27.70 3.06
2089 2722 0.890542 GTTGGTGCTGGCATGAGACA 60.891 55.000 0.00 0.00 0.00 3.41
2090 2723 0.607489 AGTTGGTGCTGGCATGAGAC 60.607 55.000 0.00 0.00 0.00 3.36
2091 2724 0.111061 AAGTTGGTGCTGGCATGAGA 59.889 50.000 0.00 0.00 0.00 3.27
2092 2725 0.524862 GAAGTTGGTGCTGGCATGAG 59.475 55.000 0.00 0.00 0.00 2.90
2093 2726 0.111061 AGAAGTTGGTGCTGGCATGA 59.889 50.000 0.00 0.00 0.00 3.07
2104 2737 7.677041 GCAATTCTCCAAAAACAAAGAAGTTGG 60.677 37.037 0.00 0.00 41.97 3.77
2132 2765 1.901085 GTACTAGGTGCTGCTGGCT 59.099 57.895 0.00 0.00 42.39 4.75
2134 2767 1.519455 GCGTACTAGGTGCTGCTGG 60.519 63.158 0.00 0.00 0.00 4.85
2140 2773 1.084370 CAGCTTGGCGTACTAGGTGC 61.084 60.000 9.03 0.00 41.87 5.01
2143 2776 1.144057 CCCAGCTTGGCGTACTAGG 59.856 63.158 0.00 0.00 35.79 3.02
2180 2813 5.946377 GGAGGGTATCTTGTTTGTTTCATCT 59.054 40.000 0.00 0.00 0.00 2.90
2196 2829 1.064758 TGAAATTGCGCAGGAGGGTAT 60.065 47.619 11.31 0.00 0.00 2.73
2197 2830 0.326595 TGAAATTGCGCAGGAGGGTA 59.673 50.000 11.31 0.00 0.00 3.69
2198 2831 0.962356 CTGAAATTGCGCAGGAGGGT 60.962 55.000 11.31 0.00 0.00 4.34
2199 2832 0.962356 ACTGAAATTGCGCAGGAGGG 60.962 55.000 11.31 3.49 36.47 4.30
2200 2833 1.667724 CTACTGAAATTGCGCAGGAGG 59.332 52.381 11.31 2.91 39.03 4.30
2201 2834 2.606725 CTCTACTGAAATTGCGCAGGAG 59.393 50.000 11.31 3.74 43.10 3.69
2202 2835 2.621338 CTCTACTGAAATTGCGCAGGA 58.379 47.619 11.31 0.00 36.47 3.86
2203 2836 1.063174 GCTCTACTGAAATTGCGCAGG 59.937 52.381 11.31 0.66 36.47 4.85
2204 2837 1.733912 TGCTCTACTGAAATTGCGCAG 59.266 47.619 11.31 0.00 38.10 5.18
2205 2838 1.733912 CTGCTCTACTGAAATTGCGCA 59.266 47.619 5.66 5.66 0.00 6.09
2206 2839 1.063174 CCTGCTCTACTGAAATTGCGC 59.937 52.381 0.00 0.00 0.00 6.09
2207 2840 2.350522 ACCTGCTCTACTGAAATTGCG 58.649 47.619 0.00 0.00 0.00 4.85
2208 2841 4.253685 TGTACCTGCTCTACTGAAATTGC 58.746 43.478 0.00 0.00 0.00 3.56
2209 2842 6.108687 TCATGTACCTGCTCTACTGAAATTG 58.891 40.000 0.00 0.00 0.00 2.32
2210 2843 6.299805 TCATGTACCTGCTCTACTGAAATT 57.700 37.500 0.00 0.00 0.00 1.82
2211 2844 5.939764 TCATGTACCTGCTCTACTGAAAT 57.060 39.130 0.00 0.00 0.00 2.17
2212 2845 5.246203 AGTTCATGTACCTGCTCTACTGAAA 59.754 40.000 0.00 0.00 0.00 2.69
2213 2846 4.772624 AGTTCATGTACCTGCTCTACTGAA 59.227 41.667 0.00 0.00 0.00 3.02
2214 2847 4.344978 AGTTCATGTACCTGCTCTACTGA 58.655 43.478 0.00 0.00 0.00 3.41
2215 2848 4.727507 AGTTCATGTACCTGCTCTACTG 57.272 45.455 0.00 0.00 0.00 2.74
2216 2849 4.621747 GCAAGTTCATGTACCTGCTCTACT 60.622 45.833 16.30 0.00 33.66 2.57
2217 2850 3.619038 GCAAGTTCATGTACCTGCTCTAC 59.381 47.826 16.30 0.00 33.66 2.59
2218 2851 3.260632 TGCAAGTTCATGTACCTGCTCTA 59.739 43.478 21.88 4.54 36.62 2.43
2219 2852 2.038952 TGCAAGTTCATGTACCTGCTCT 59.961 45.455 21.88 0.00 36.62 4.09
2220 2853 2.160417 GTGCAAGTTCATGTACCTGCTC 59.840 50.000 21.88 16.46 36.62 4.26
2221 2854 2.154462 GTGCAAGTTCATGTACCTGCT 58.846 47.619 21.88 0.00 36.62 4.24
2222 2855 2.154462 AGTGCAAGTTCATGTACCTGC 58.846 47.619 16.62 16.62 36.69 4.85
2223 2856 4.410492 GAAGTGCAAGTTCATGTACCTG 57.590 45.455 0.00 0.00 45.59 4.00
2232 2865 4.893424 TTACAGTTGGAAGTGCAAGTTC 57.107 40.909 0.00 0.00 45.55 3.01
2233 2866 4.947388 TCTTTACAGTTGGAAGTGCAAGTT 59.053 37.500 0.00 0.00 32.54 2.66
2234 2867 4.523083 TCTTTACAGTTGGAAGTGCAAGT 58.477 39.130 0.00 0.00 32.54 3.16
2235 2868 5.695851 ATCTTTACAGTTGGAAGTGCAAG 57.304 39.130 0.00 0.00 32.54 4.01
2236 2869 6.939730 TGATATCTTTACAGTTGGAAGTGCAA 59.060 34.615 3.98 0.00 32.54 4.08
2237 2870 6.472016 TGATATCTTTACAGTTGGAAGTGCA 58.528 36.000 3.98 0.00 32.54 4.57
2238 2871 6.985188 TGATATCTTTACAGTTGGAAGTGC 57.015 37.500 3.98 0.00 32.54 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.