Multiple sequence alignment - TraesCS4D01G319400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G319400 chr4D 100.000 3863 0 0 1 3863 483136131 483139993 0.000000e+00 7134.0
1 TraesCS4D01G319400 chr4B 93.001 2972 123 42 436 3366 613373989 613376916 0.000000e+00 4257.0
2 TraesCS4D01G319400 chr4B 91.346 208 17 1 3657 3863 613381169 613381376 2.270000e-72 283.0
3 TraesCS4D01G319400 chr4B 76.863 255 39 6 1 237 393404048 393403796 4.050000e-25 126.0
4 TraesCS4D01G319400 chr5A 90.046 2803 128 60 683 3428 663304204 663306912 0.000000e+00 3491.0
5 TraesCS4D01G319400 chr5A 86.516 838 79 19 2954 3788 663316722 663317528 0.000000e+00 891.0
6 TraesCS4D01G319400 chr5A 82.353 170 28 1 106 275 560458902 560459069 3.110000e-31 147.0
7 TraesCS4D01G319400 chr5A 79.888 179 28 5 3293 3470 35988373 35988544 1.460000e-24 124.0
8 TraesCS4D01G319400 chr2B 79.703 606 114 7 2018 2618 488192677 488193278 2.760000e-116 429.0
9 TraesCS4D01G319400 chr2B 81.065 169 30 1 106 274 272762698 272762532 2.420000e-27 134.0
10 TraesCS4D01G319400 chr2B 75.781 256 41 7 1 237 690663447 690663194 4.080000e-20 110.0
11 TraesCS4D01G319400 chr2D 83.224 459 74 2 2160 2618 414956035 414956490 5.970000e-113 418.0
12 TraesCS4D01G319400 chr2A 83.224 459 74 2 2160 2618 581942091 581942546 5.970000e-113 418.0
13 TraesCS4D01G319400 chr5D 83.774 265 35 6 3603 3863 298936852 298936592 1.070000e-60 244.0
14 TraesCS4D01G319400 chr3B 82.900 269 26 11 3600 3863 812480069 812480322 1.400000e-54 224.0
15 TraesCS4D01G319400 chr3B 90.647 139 12 1 3726 3863 812500862 812501000 2.370000e-42 183.0
16 TraesCS4D01G319400 chr3B 76.953 256 38 11 1 237 448572056 448572309 4.050000e-25 126.0
17 TraesCS4D01G319400 chr3B 83.529 85 13 1 3298 3382 11001722 11001639 1.150000e-10 78.7
18 TraesCS4D01G319400 chr6B 77.647 255 37 7 1 237 227259580 227259328 1.870000e-28 137.0
19 TraesCS4D01G319400 chr6B 77.647 255 37 7 1 237 487476702 487476954 1.870000e-28 137.0
20 TraesCS4D01G319400 chr6D 77.083 240 47 7 3616 3848 348648033 348648271 8.710000e-27 132.0
21 TraesCS4D01G319400 chr6D 100.000 31 0 0 2595 2625 119138809 119138779 1.500000e-04 58.4
22 TraesCS4D01G319400 chrUn 88.542 96 11 0 3768 3863 130419625 130419530 2.440000e-22 117.0
23 TraesCS4D01G319400 chr4A 82.576 132 21 1 106 237 642117068 642116939 8.770000e-22 115.0
24 TraesCS4D01G319400 chr1B 76.000 250 39 11 1 231 398963732 398963979 4.080000e-20 110.0
25 TraesCS4D01G319400 chr3D 80.165 121 21 3 3308 3427 8360257 8360139 1.910000e-13 87.9
26 TraesCS4D01G319400 chr7B 95.000 40 2 0 2583 2622 645389598 645389637 3.220000e-06 63.9
27 TraesCS4D01G319400 chr7A 95.000 40 2 0 2583 2622 671417390 671417429 3.220000e-06 63.9
28 TraesCS4D01G319400 chr6A 100.000 31 0 0 2595 2625 147303341 147303311 1.500000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G319400 chr4D 483136131 483139993 3862 False 7134 7134 100.000 1 3863 1 chr4D.!!$F1 3862
1 TraesCS4D01G319400 chr4B 613373989 613376916 2927 False 4257 4257 93.001 436 3366 1 chr4B.!!$F1 2930
2 TraesCS4D01G319400 chr5A 663304204 663306912 2708 False 3491 3491 90.046 683 3428 1 chr5A.!!$F3 2745
3 TraesCS4D01G319400 chr5A 663316722 663317528 806 False 891 891 86.516 2954 3788 1 chr5A.!!$F4 834
4 TraesCS4D01G319400 chr2B 488192677 488193278 601 False 429 429 79.703 2018 2618 1 chr2B.!!$F1 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
193 194 0.029567 CGTAGGAGCATCGTCCTCAC 59.970 60.0 0.00 0.0 44.25 3.51 F
195 196 0.033503 TAGGAGCATCGTCCTCACCA 60.034 55.0 0.00 0.0 44.25 4.17 F
201 202 0.034756 CATCGTCCTCACCACACCAA 59.965 55.0 0.00 0.0 0.00 3.67 F
203 204 0.034756 TCGTCCTCACCACACCAATG 59.965 55.0 0.00 0.0 0.00 2.82 F
469 470 0.035630 GTGAGCTCAGTCCTGCCAAT 60.036 55.0 18.89 0.0 0.00 3.16 F
538 546 0.250597 ACCAAGAACGTTGGGGCTAC 60.251 55.0 5.00 0.0 43.71 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1767 1809 0.109412 GTACCCTTCGACACAGGACG 60.109 60.000 3.07 0.0 32.41 4.79 R
1925 1968 0.392998 ACCTGATGATGTTGGCGACC 60.393 55.000 1.61 0.0 0.00 4.79 R
2164 2242 1.065418 GTCATGGTCCCCTTCACGATT 60.065 52.381 0.00 0.0 0.00 3.34 R
2640 2718 2.589492 CGCCGTCAATGATCTCGCC 61.589 63.158 0.00 0.0 0.00 5.54 R
2651 2734 1.443802 TGCATGTAATTTCGCCGTCA 58.556 45.000 0.00 0.0 0.00 4.35 R
2883 2966 4.680237 CGACCGGTCAAGCCAGCA 62.680 66.667 32.80 0.0 36.97 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.155950 AACATCAACAGGCGTGCA 57.844 50.000 6.26 0.00 0.00 4.57
18 19 1.654220 AACATCAACAGGCGTGCAC 59.346 52.632 6.82 6.82 0.00 4.57
19 20 2.116736 AACATCAACAGGCGTGCACG 62.117 55.000 34.01 34.01 43.27 5.34
29 30 4.738198 CGTGCACGCTGGAGATAT 57.262 55.556 28.16 0.00 0.00 1.63
30 31 3.865700 CGTGCACGCTGGAGATATA 57.134 52.632 28.16 0.00 0.00 0.86
31 32 1.691127 CGTGCACGCTGGAGATATAG 58.309 55.000 28.16 0.00 0.00 1.31
32 33 1.667177 CGTGCACGCTGGAGATATAGG 60.667 57.143 28.16 0.00 0.00 2.57
33 34 1.341531 GTGCACGCTGGAGATATAGGT 59.658 52.381 0.00 0.00 0.00 3.08
34 35 1.613925 TGCACGCTGGAGATATAGGTC 59.386 52.381 0.00 0.00 0.00 3.85
35 36 1.613925 GCACGCTGGAGATATAGGTCA 59.386 52.381 0.00 0.00 0.00 4.02
36 37 2.352225 GCACGCTGGAGATATAGGTCAG 60.352 54.545 0.00 0.00 0.00 3.51
37 38 1.889829 ACGCTGGAGATATAGGTCAGC 59.110 52.381 0.00 0.00 45.01 4.26
38 39 1.203523 CGCTGGAGATATAGGTCAGCC 59.796 57.143 7.85 0.00 45.50 4.85
39 40 1.203523 GCTGGAGATATAGGTCAGCCG 59.796 57.143 0.00 0.00 43.36 5.52
40 41 1.821753 CTGGAGATATAGGTCAGCCGG 59.178 57.143 0.00 0.00 40.50 6.13
41 42 1.427753 TGGAGATATAGGTCAGCCGGA 59.572 52.381 5.05 0.00 40.50 5.14
42 43 2.096248 GGAGATATAGGTCAGCCGGAG 58.904 57.143 5.05 0.00 40.50 4.63
55 56 3.168271 CGGAGGTTGTGCATCGTG 58.832 61.111 0.00 0.00 0.00 4.35
56 57 2.870372 GGAGGTTGTGCATCGTGC 59.130 61.111 0.00 3.44 45.29 5.34
65 66 3.490759 GCATCGTGCACGGACAGG 61.491 66.667 36.41 21.51 44.26 4.00
66 67 2.261361 CATCGTGCACGGACAGGA 59.739 61.111 36.41 18.59 38.66 3.86
67 68 1.374125 CATCGTGCACGGACAGGAA 60.374 57.895 36.41 17.82 37.91 3.36
68 69 1.374252 ATCGTGCACGGACAGGAAC 60.374 57.895 36.41 0.00 37.91 3.62
69 70 3.403057 CGTGCACGGACAGGAACG 61.403 66.667 31.15 0.89 35.37 3.95
70 71 3.712881 GTGCACGGACAGGAACGC 61.713 66.667 0.00 0.00 0.00 4.84
71 72 3.923864 TGCACGGACAGGAACGCT 61.924 61.111 0.00 0.00 0.00 5.07
72 73 2.665185 GCACGGACAGGAACGCTT 60.665 61.111 0.00 0.00 0.00 4.68
73 74 2.668280 GCACGGACAGGAACGCTTC 61.668 63.158 0.00 0.00 0.00 3.86
74 75 1.300620 CACGGACAGGAACGCTTCA 60.301 57.895 0.00 0.00 0.00 3.02
75 76 1.006102 ACGGACAGGAACGCTTCAG 60.006 57.895 0.00 0.00 0.00 3.02
76 77 1.289066 CGGACAGGAACGCTTCAGA 59.711 57.895 0.00 0.00 0.00 3.27
77 78 0.108615 CGGACAGGAACGCTTCAGAT 60.109 55.000 0.00 0.00 0.00 2.90
78 79 1.646189 GGACAGGAACGCTTCAGATC 58.354 55.000 0.00 0.00 0.00 2.75
79 80 1.205893 GGACAGGAACGCTTCAGATCT 59.794 52.381 0.00 0.00 0.00 2.75
80 81 2.266554 GACAGGAACGCTTCAGATCTG 58.733 52.381 17.07 17.07 0.00 2.90
81 82 1.895798 ACAGGAACGCTTCAGATCTGA 59.104 47.619 21.67 21.67 37.91 3.27
82 83 2.266554 CAGGAACGCTTCAGATCTGAC 58.733 52.381 25.07 13.55 39.66 3.51
83 84 1.895798 AGGAACGCTTCAGATCTGACA 59.104 47.619 25.07 14.64 39.66 3.58
84 85 2.094286 AGGAACGCTTCAGATCTGACAG 60.094 50.000 25.07 22.66 39.66 3.51
85 86 2.266554 GAACGCTTCAGATCTGACAGG 58.733 52.381 25.07 17.57 39.66 4.00
86 87 0.534412 ACGCTTCAGATCTGACAGGG 59.466 55.000 29.24 29.24 39.66 4.45
87 88 0.179089 CGCTTCAGATCTGACAGGGG 60.179 60.000 25.07 19.70 39.66 4.79
88 89 1.198713 GCTTCAGATCTGACAGGGGA 58.801 55.000 25.07 8.58 39.66 4.81
89 90 1.138661 GCTTCAGATCTGACAGGGGAG 59.861 57.143 25.07 18.36 39.66 4.30
90 91 1.138661 CTTCAGATCTGACAGGGGAGC 59.861 57.143 25.07 0.00 39.66 4.70
91 92 0.337773 TCAGATCTGACAGGGGAGCT 59.662 55.000 21.67 0.00 34.14 4.09
92 93 0.752054 CAGATCTGACAGGGGAGCTC 59.248 60.000 18.34 4.71 0.00 4.09
93 94 0.754957 AGATCTGACAGGGGAGCTCG 60.755 60.000 7.83 0.00 0.00 5.03
94 95 1.743321 GATCTGACAGGGGAGCTCGG 61.743 65.000 7.83 0.00 0.00 4.63
95 96 3.465403 CTGACAGGGGAGCTCGGG 61.465 72.222 7.83 0.00 0.00 5.14
119 120 3.953775 CCACACCGGGACCTTGCT 61.954 66.667 6.32 0.00 0.00 3.91
120 121 2.669569 CACACCGGGACCTTGCTG 60.670 66.667 6.32 0.00 0.00 4.41
121 122 4.643387 ACACCGGGACCTTGCTGC 62.643 66.667 6.32 0.00 0.00 5.25
142 143 2.027314 CGCAGCCGAGGAGATCTG 59.973 66.667 0.00 0.00 36.29 2.90
143 144 2.484928 CGCAGCCGAGGAGATCTGA 61.485 63.158 0.00 0.00 36.29 3.27
144 145 1.067250 GCAGCCGAGGAGATCTGAC 59.933 63.158 0.00 0.00 0.00 3.51
145 146 1.739049 CAGCCGAGGAGATCTGACC 59.261 63.158 0.00 0.00 0.00 4.02
146 147 1.039785 CAGCCGAGGAGATCTGACCA 61.040 60.000 0.00 0.00 0.00 4.02
147 148 0.324738 AGCCGAGGAGATCTGACCAA 60.325 55.000 0.00 0.00 0.00 3.67
148 149 0.179097 GCCGAGGAGATCTGACCAAC 60.179 60.000 0.00 0.00 0.00 3.77
149 150 0.461961 CCGAGGAGATCTGACCAACC 59.538 60.000 0.00 0.00 0.00 3.77
150 151 1.479709 CGAGGAGATCTGACCAACCT 58.520 55.000 0.00 0.00 0.00 3.50
151 152 1.407258 CGAGGAGATCTGACCAACCTC 59.593 57.143 13.49 13.49 40.03 3.85
152 153 2.461695 GAGGAGATCTGACCAACCTCA 58.538 52.381 17.07 0.00 42.11 3.86
153 154 2.167487 GAGGAGATCTGACCAACCTCAC 59.833 54.545 17.07 0.00 42.11 3.51
154 155 1.208293 GGAGATCTGACCAACCTCACC 59.792 57.143 0.00 0.00 0.00 4.02
155 156 0.898320 AGATCTGACCAACCTCACCG 59.102 55.000 0.00 0.00 0.00 4.94
156 157 0.895530 GATCTGACCAACCTCACCGA 59.104 55.000 0.00 0.00 0.00 4.69
157 158 0.608640 ATCTGACCAACCTCACCGAC 59.391 55.000 0.00 0.00 0.00 4.79
158 159 1.372997 CTGACCAACCTCACCGACG 60.373 63.158 0.00 0.00 0.00 5.12
159 160 1.802337 CTGACCAACCTCACCGACGA 61.802 60.000 0.00 0.00 0.00 4.20
160 161 1.080705 GACCAACCTCACCGACGAG 60.081 63.158 0.00 0.00 0.00 4.18
161 162 2.432628 CCAACCTCACCGACGAGC 60.433 66.667 0.00 0.00 0.00 5.03
162 163 2.432628 CAACCTCACCGACGAGCC 60.433 66.667 0.00 0.00 0.00 4.70
163 164 3.692406 AACCTCACCGACGAGCCC 61.692 66.667 0.00 0.00 0.00 5.19
166 167 4.436998 CTCACCGACGAGCCCCAC 62.437 72.222 0.00 0.00 0.00 4.61
178 179 3.534056 CCCCACCCGCTACCGTAG 61.534 72.222 0.76 0.76 0.00 3.51
192 193 2.405143 CGTAGGAGCATCGTCCTCA 58.595 57.895 0.00 0.00 44.25 3.86
193 194 0.029567 CGTAGGAGCATCGTCCTCAC 59.970 60.000 0.00 0.00 44.25 3.51
194 195 0.386113 GTAGGAGCATCGTCCTCACC 59.614 60.000 0.00 0.00 44.25 4.02
195 196 0.033503 TAGGAGCATCGTCCTCACCA 60.034 55.000 0.00 0.00 44.25 4.17
196 197 1.153549 GGAGCATCGTCCTCACCAC 60.154 63.158 0.00 0.00 34.37 4.16
197 198 1.591703 GAGCATCGTCCTCACCACA 59.408 57.895 0.00 0.00 0.00 4.17
198 199 0.737715 GAGCATCGTCCTCACCACAC 60.738 60.000 0.00 0.00 0.00 3.82
199 200 1.741770 GCATCGTCCTCACCACACC 60.742 63.158 0.00 0.00 0.00 4.16
200 201 1.671166 CATCGTCCTCACCACACCA 59.329 57.895 0.00 0.00 0.00 4.17
201 202 0.034756 CATCGTCCTCACCACACCAA 59.965 55.000 0.00 0.00 0.00 3.67
202 203 0.984230 ATCGTCCTCACCACACCAAT 59.016 50.000 0.00 0.00 0.00 3.16
203 204 0.034756 TCGTCCTCACCACACCAATG 59.965 55.000 0.00 0.00 0.00 2.82
204 205 1.577328 CGTCCTCACCACACCAATGC 61.577 60.000 0.00 0.00 0.00 3.56
205 206 1.074775 TCCTCACCACACCAATGCC 59.925 57.895 0.00 0.00 0.00 4.40
206 207 2.334946 CCTCACCACACCAATGCCG 61.335 63.158 0.00 0.00 0.00 5.69
207 208 2.981560 CTCACCACACCAATGCCGC 61.982 63.158 0.00 0.00 0.00 6.53
208 209 4.054825 CACCACACCAATGCCGCC 62.055 66.667 0.00 0.00 0.00 6.13
217 218 4.181010 AATGCCGCCGCCTCAGAT 62.181 61.111 0.00 0.00 0.00 2.90
218 219 4.615815 ATGCCGCCGCCTCAGATC 62.616 66.667 0.00 0.00 0.00 2.75
221 222 4.598894 CCGCCGCCTCAGATCCAG 62.599 72.222 0.00 0.00 0.00 3.86
222 223 4.598894 CGCCGCCTCAGATCCAGG 62.599 72.222 4.19 4.19 0.00 4.45
227 228 3.560989 CCTCAGATCCAGGCCCTC 58.439 66.667 0.00 0.00 0.00 4.30
228 229 1.383664 CCTCAGATCCAGGCCCTCA 60.384 63.158 0.00 0.00 0.00 3.86
229 230 1.694133 CCTCAGATCCAGGCCCTCAC 61.694 65.000 0.00 0.00 0.00 3.51
230 231 1.690633 TCAGATCCAGGCCCTCACC 60.691 63.158 0.00 0.00 0.00 4.02
231 232 1.997311 CAGATCCAGGCCCTCACCA 60.997 63.158 0.00 0.00 0.00 4.17
232 233 1.005289 AGATCCAGGCCCTCACCAT 59.995 57.895 0.00 0.00 0.00 3.55
233 234 1.059006 AGATCCAGGCCCTCACCATC 61.059 60.000 0.00 0.00 0.00 3.51
234 235 2.388890 GATCCAGGCCCTCACCATCG 62.389 65.000 0.00 0.00 0.00 3.84
235 236 2.896677 ATCCAGGCCCTCACCATCGA 62.897 60.000 0.00 0.00 0.00 3.59
236 237 2.669133 CCAGGCCCTCACCATCGAA 61.669 63.158 0.00 0.00 0.00 3.71
237 238 1.299648 CAGGCCCTCACCATCGAAA 59.700 57.895 0.00 0.00 0.00 3.46
238 239 0.745845 CAGGCCCTCACCATCGAAAG 60.746 60.000 0.00 0.00 0.00 2.62
239 240 1.452108 GGCCCTCACCATCGAAAGG 60.452 63.158 5.78 5.78 0.00 3.11
240 241 4.963878 CCCTCACCATCGAAAGGG 57.036 61.111 11.44 8.56 42.47 3.95
242 243 3.768633 CCTCACCATCGAAAGGGAG 57.231 57.895 9.74 9.74 0.00 4.30
243 244 0.905357 CCTCACCATCGAAAGGGAGT 59.095 55.000 14.25 0.00 0.00 3.85
244 245 1.406069 CCTCACCATCGAAAGGGAGTG 60.406 57.143 14.25 5.38 0.00 3.51
245 246 0.613260 TCACCATCGAAAGGGAGTGG 59.387 55.000 11.44 4.95 36.06 4.00
246 247 0.613260 CACCATCGAAAGGGAGTGGA 59.387 55.000 11.44 0.00 34.13 4.02
247 248 0.613777 ACCATCGAAAGGGAGTGGAC 59.386 55.000 11.44 0.00 34.13 4.02
248 249 0.460284 CCATCGAAAGGGAGTGGACG 60.460 60.000 0.00 0.00 31.59 4.79
249 250 0.530744 CATCGAAAGGGAGTGGACGA 59.469 55.000 0.00 0.00 0.00 4.20
250 251 1.067142 CATCGAAAGGGAGTGGACGAA 60.067 52.381 0.00 0.00 33.77 3.85
251 252 0.601558 TCGAAAGGGAGTGGACGAAG 59.398 55.000 0.00 0.00 0.00 3.79
252 253 0.601558 CGAAAGGGAGTGGACGAAGA 59.398 55.000 0.00 0.00 0.00 2.87
253 254 1.669211 CGAAAGGGAGTGGACGAAGAC 60.669 57.143 0.00 0.00 0.00 3.01
254 255 0.685660 AAAGGGAGTGGACGAAGACC 59.314 55.000 0.00 0.00 44.11 3.85
255 256 0.178929 AAGGGAGTGGACGAAGACCT 60.179 55.000 0.00 0.00 44.19 3.85
256 257 0.178929 AGGGAGTGGACGAAGACCTT 60.179 55.000 0.00 0.00 44.19 3.50
257 258 0.037232 GGGAGTGGACGAAGACCTTG 60.037 60.000 0.00 0.00 44.19 3.61
258 259 0.670854 GGAGTGGACGAAGACCTTGC 60.671 60.000 0.00 0.00 44.19 4.01
259 260 0.670854 GAGTGGACGAAGACCTTGCC 60.671 60.000 0.00 0.00 44.19 4.52
260 261 2.027625 GTGGACGAAGACCTTGCCG 61.028 63.158 0.00 0.00 44.19 5.69
261 262 3.119096 GGACGAAGACCTTGCCGC 61.119 66.667 0.00 0.00 39.76 6.53
262 263 3.119096 GACGAAGACCTTGCCGCC 61.119 66.667 0.00 0.00 0.00 6.13
263 264 3.876589 GACGAAGACCTTGCCGCCA 62.877 63.158 0.00 0.00 0.00 5.69
264 265 3.423154 CGAAGACCTTGCCGCCAC 61.423 66.667 0.00 0.00 0.00 5.01
265 266 3.056328 GAAGACCTTGCCGCCACC 61.056 66.667 0.00 0.00 0.00 4.61
266 267 4.660938 AAGACCTTGCCGCCACCC 62.661 66.667 0.00 0.00 0.00 4.61
271 272 4.335647 CTTGCCGCCACCCTCACT 62.336 66.667 0.00 0.00 0.00 3.41
272 273 4.641645 TTGCCGCCACCCTCACTG 62.642 66.667 0.00 0.00 0.00 3.66
278 279 4.394712 CCACCCTCACTGGCGACC 62.395 72.222 0.00 0.00 0.00 4.79
279 280 4.742201 CACCCTCACTGGCGACCG 62.742 72.222 0.00 0.00 0.00 4.79
297 298 4.463879 CCTCTGGCAGCGGTGAGG 62.464 72.222 20.69 12.32 39.87 3.86
298 299 3.385384 CTCTGGCAGCGGTGAGGA 61.385 66.667 20.69 11.16 0.00 3.71
299 300 3.368190 CTCTGGCAGCGGTGAGGAG 62.368 68.421 20.69 16.52 0.00 3.69
300 301 3.385384 CTGGCAGCGGTGAGGAGA 61.385 66.667 20.69 0.00 0.00 3.71
301 302 2.922503 TGGCAGCGGTGAGGAGAA 60.923 61.111 20.69 0.00 0.00 2.87
302 303 2.125350 GGCAGCGGTGAGGAGAAG 60.125 66.667 20.69 0.00 0.00 2.85
303 304 2.125350 GCAGCGGTGAGGAGAAGG 60.125 66.667 20.69 0.00 0.00 3.46
304 305 2.581354 CAGCGGTGAGGAGAAGGG 59.419 66.667 9.50 0.00 0.00 3.95
305 306 2.685380 AGCGGTGAGGAGAAGGGG 60.685 66.667 0.00 0.00 0.00 4.79
306 307 3.787001 GCGGTGAGGAGAAGGGGG 61.787 72.222 0.00 0.00 0.00 5.40
307 308 2.038975 CGGTGAGGAGAAGGGGGA 59.961 66.667 0.00 0.00 0.00 4.81
308 309 2.060980 CGGTGAGGAGAAGGGGGAG 61.061 68.421 0.00 0.00 0.00 4.30
309 310 1.690985 GGTGAGGAGAAGGGGGAGG 60.691 68.421 0.00 0.00 0.00 4.30
310 311 1.690985 GTGAGGAGAAGGGGGAGGG 60.691 68.421 0.00 0.00 0.00 4.30
311 312 2.040359 GAGGAGAAGGGGGAGGGG 60.040 72.222 0.00 0.00 0.00 4.79
312 313 3.711782 AGGAGAAGGGGGAGGGGG 61.712 72.222 0.00 0.00 0.00 5.40
336 337 3.458163 CAGCGCGGAGGAACCCTA 61.458 66.667 8.83 0.00 31.76 3.53
337 338 3.148279 AGCGCGGAGGAACCCTAG 61.148 66.667 8.83 0.00 31.76 3.02
338 339 4.222847 GCGCGGAGGAACCCTAGG 62.223 72.222 8.83 0.06 31.76 3.02
339 340 2.758737 CGCGGAGGAACCCTAGGT 60.759 66.667 8.29 0.00 37.65 3.08
340 341 2.783288 CGCGGAGGAACCCTAGGTC 61.783 68.421 8.29 0.00 33.12 3.85
341 342 2.783288 GCGGAGGAACCCTAGGTCG 61.783 68.421 8.29 0.00 33.12 4.79
342 343 2.783288 CGGAGGAACCCTAGGTCGC 61.783 68.421 8.29 0.00 33.12 5.19
343 344 2.433146 GGAGGAACCCTAGGTCGCC 61.433 68.421 8.29 5.49 33.12 5.54
344 345 2.365237 AGGAACCCTAGGTCGCCC 60.365 66.667 8.29 3.42 33.12 6.13
345 346 2.365237 GGAACCCTAGGTCGCCCT 60.365 66.667 8.29 0.00 45.51 5.19
346 347 2.433146 GGAACCCTAGGTCGCCCTC 61.433 68.421 8.29 0.00 41.45 4.30
347 348 2.758737 AACCCTAGGTCGCCCTCG 60.759 66.667 8.29 0.00 41.45 4.63
348 349 3.292481 AACCCTAGGTCGCCCTCGA 62.292 63.158 8.29 0.00 41.45 4.04
349 350 2.907917 CCCTAGGTCGCCCTCGAG 60.908 72.222 8.29 5.13 46.46 4.04
350 351 2.192443 CCTAGGTCGCCCTCGAGA 59.808 66.667 15.71 0.00 46.46 4.04
351 352 1.894756 CCTAGGTCGCCCTCGAGAG 60.895 68.421 15.71 0.16 46.46 3.20
352 353 1.146485 CTAGGTCGCCCTCGAGAGA 59.854 63.158 15.71 7.57 46.46 3.10
362 363 3.555619 TCGAGAGAGCGACGCGAG 61.556 66.667 15.93 7.68 35.07 5.03
365 366 3.389727 GAGAGAGCGACGCGAGCTT 62.390 63.158 27.65 19.38 46.13 3.74
366 367 2.505118 GAGAGCGACGCGAGCTTT 60.505 61.111 27.65 23.71 46.13 3.51
367 368 2.049063 AGAGCGACGCGAGCTTTT 60.049 55.556 27.65 18.86 46.13 2.27
368 369 2.094724 GAGCGACGCGAGCTTTTG 59.905 61.111 27.65 5.98 46.13 2.44
369 370 2.658707 GAGCGACGCGAGCTTTTGT 61.659 57.895 27.65 11.31 46.13 2.83
370 371 2.202058 GCGACGCGAGCTTTTGTC 60.202 61.111 15.93 0.00 0.00 3.18
371 372 2.470286 CGACGCGAGCTTTTGTCC 59.530 61.111 15.93 0.00 0.00 4.02
372 373 2.307309 CGACGCGAGCTTTTGTCCA 61.307 57.895 15.93 0.00 0.00 4.02
373 374 1.626654 CGACGCGAGCTTTTGTCCAT 61.627 55.000 15.93 0.00 0.00 3.41
374 375 0.517316 GACGCGAGCTTTTGTCCATT 59.483 50.000 15.93 0.00 0.00 3.16
375 376 0.951558 ACGCGAGCTTTTGTCCATTT 59.048 45.000 15.93 0.00 0.00 2.32
376 377 1.336755 ACGCGAGCTTTTGTCCATTTT 59.663 42.857 15.93 0.00 0.00 1.82
377 378 1.978782 CGCGAGCTTTTGTCCATTTTC 59.021 47.619 0.00 0.00 0.00 2.29
378 379 2.350772 CGCGAGCTTTTGTCCATTTTCT 60.351 45.455 0.00 0.00 0.00 2.52
379 380 2.982470 GCGAGCTTTTGTCCATTTTCTG 59.018 45.455 0.00 0.00 0.00 3.02
380 381 2.982470 CGAGCTTTTGTCCATTTTCTGC 59.018 45.455 0.00 0.00 0.00 4.26
381 382 3.550639 CGAGCTTTTGTCCATTTTCTGCA 60.551 43.478 0.00 0.00 0.00 4.41
382 383 4.370917 GAGCTTTTGTCCATTTTCTGCAA 58.629 39.130 0.00 0.00 0.00 4.08
383 384 4.768583 AGCTTTTGTCCATTTTCTGCAAA 58.231 34.783 0.00 0.00 0.00 3.68
384 385 5.370679 AGCTTTTGTCCATTTTCTGCAAAT 58.629 33.333 0.00 0.00 35.24 2.32
385 386 6.523840 AGCTTTTGTCCATTTTCTGCAAATA 58.476 32.000 0.00 0.00 32.90 1.40
386 387 7.163441 AGCTTTTGTCCATTTTCTGCAAATAT 58.837 30.769 0.00 0.00 32.90 1.28
387 388 7.662669 AGCTTTTGTCCATTTTCTGCAAATATT 59.337 29.630 0.00 0.00 32.90 1.28
388 389 7.959109 GCTTTTGTCCATTTTCTGCAAATATTC 59.041 33.333 0.00 0.00 32.90 1.75
389 390 9.211485 CTTTTGTCCATTTTCTGCAAATATTCT 57.789 29.630 0.00 0.00 32.90 2.40
390 391 9.558396 TTTTGTCCATTTTCTGCAAATATTCTT 57.442 25.926 0.00 0.00 32.90 2.52
391 392 9.558396 TTTGTCCATTTTCTGCAAATATTCTTT 57.442 25.926 0.00 0.00 32.90 2.52
392 393 9.558396 TTGTCCATTTTCTGCAAATATTCTTTT 57.442 25.926 0.00 0.00 32.90 2.27
393 394 9.206870 TGTCCATTTTCTGCAAATATTCTTTTC 57.793 29.630 0.00 0.00 32.90 2.29
394 395 9.428097 GTCCATTTTCTGCAAATATTCTTTTCT 57.572 29.630 0.00 0.00 32.90 2.52
413 414 9.423061 TCTTTTCTTTTTCTTTTGTCTTCTTGG 57.577 29.630 0.00 0.00 0.00 3.61
414 415 9.423061 CTTTTCTTTTTCTTTTGTCTTCTTGGA 57.577 29.630 0.00 0.00 0.00 3.53
415 416 9.942850 TTTTCTTTTTCTTTTGTCTTCTTGGAT 57.057 25.926 0.00 0.00 0.00 3.41
416 417 9.586435 TTTCTTTTTCTTTTGTCTTCTTGGATC 57.414 29.630 0.00 0.00 0.00 3.36
417 418 8.292444 TCTTTTTCTTTTGTCTTCTTGGATCA 57.708 30.769 0.00 0.00 0.00 2.92
418 419 8.190784 TCTTTTTCTTTTGTCTTCTTGGATCAC 58.809 33.333 0.00 0.00 0.00 3.06
419 420 7.403312 TTTTCTTTTGTCTTCTTGGATCACA 57.597 32.000 0.00 0.00 0.00 3.58
420 421 7.403312 TTTCTTTTGTCTTCTTGGATCACAA 57.597 32.000 0.00 0.00 37.55 3.33
421 422 7.587037 TTCTTTTGTCTTCTTGGATCACAAT 57.413 32.000 0.00 0.00 38.65 2.71
422 423 7.587037 TCTTTTGTCTTCTTGGATCACAATT 57.413 32.000 0.00 0.00 38.65 2.32
423 424 8.010733 TCTTTTGTCTTCTTGGATCACAATTT 57.989 30.769 0.00 0.00 38.65 1.82
424 425 8.477256 TCTTTTGTCTTCTTGGATCACAATTTT 58.523 29.630 0.00 0.00 38.65 1.82
425 426 9.101655 CTTTTGTCTTCTTGGATCACAATTTTT 57.898 29.630 0.00 0.00 38.65 1.94
427 428 9.748708 TTTGTCTTCTTGGATCACAATTTTTAG 57.251 29.630 0.00 0.00 38.65 1.85
428 429 8.463930 TGTCTTCTTGGATCACAATTTTTAGT 57.536 30.769 0.00 0.00 38.65 2.24
429 430 8.352201 TGTCTTCTTGGATCACAATTTTTAGTG 58.648 33.333 0.00 0.00 38.65 2.74
431 432 8.786898 TCTTCTTGGATCACAATTTTTAGTGAG 58.213 33.333 0.00 0.00 46.70 3.51
432 433 8.463930 TTCTTGGATCACAATTTTTAGTGAGT 57.536 30.769 0.00 0.00 46.70 3.41
433 434 7.874940 TCTTGGATCACAATTTTTAGTGAGTG 58.125 34.615 0.00 0.00 46.70 3.51
434 435 7.719193 TCTTGGATCACAATTTTTAGTGAGTGA 59.281 33.333 0.00 0.00 46.70 3.41
435 436 7.815840 TGGATCACAATTTTTAGTGAGTGAA 57.184 32.000 0.00 0.00 46.70 3.18
436 437 7.874940 TGGATCACAATTTTTAGTGAGTGAAG 58.125 34.615 0.00 0.00 46.70 3.02
437 438 6.803807 GGATCACAATTTTTAGTGAGTGAAGC 59.196 38.462 0.00 0.00 46.70 3.86
438 439 5.747565 TCACAATTTTTAGTGAGTGAAGCG 58.252 37.500 0.00 0.00 39.65 4.68
439 440 5.295787 TCACAATTTTTAGTGAGTGAAGCGT 59.704 36.000 0.00 0.00 39.65 5.07
440 441 5.971202 CACAATTTTTAGTGAGTGAAGCGTT 59.029 36.000 0.00 0.00 37.97 4.84
448 449 4.848757 AGTGAGTGAAGCGTTGAATTTTC 58.151 39.130 0.00 0.00 0.00 2.29
451 452 4.335315 TGAGTGAAGCGTTGAATTTTCTGT 59.665 37.500 0.00 0.00 0.00 3.41
462 463 4.067896 TGAATTTTCTGTGAGCTCAGTCC 58.932 43.478 18.89 6.23 36.85 3.85
469 470 0.035630 GTGAGCTCAGTCCTGCCAAT 60.036 55.000 18.89 0.00 0.00 3.16
470 471 0.251354 TGAGCTCAGTCCTGCCAATC 59.749 55.000 13.74 0.00 0.00 2.67
475 483 0.465705 TCAGTCCTGCCAATCGATCC 59.534 55.000 0.00 0.00 0.00 3.36
510 518 6.700352 TGGTCCAATCCTCATTTGAAATTTC 58.300 36.000 11.41 11.41 0.00 2.17
538 546 0.250597 ACCAAGAACGTTGGGGCTAC 60.251 55.000 5.00 0.00 43.71 3.58
541 549 0.763035 AAGAACGTTGGGGCTACACT 59.237 50.000 5.00 0.00 0.00 3.55
554 562 2.619646 GGCTACACTCTAGTCCACTAGC 59.380 54.545 8.67 0.00 44.24 3.42
713 721 3.895041 CCTGGATAACACCACCAAAAAGT 59.105 43.478 0.00 0.00 35.91 2.66
714 722 5.074115 CCTGGATAACACCACCAAAAAGTA 58.926 41.667 0.00 0.00 35.91 2.24
715 723 5.048294 CCTGGATAACACCACCAAAAAGTAC 60.048 44.000 0.00 0.00 35.91 2.73
723 731 4.277423 CACCACCAAAAAGTACTACAAGGG 59.723 45.833 0.00 0.00 0.00 3.95
830 838 2.989824 ACCGGGGAGGATATCGCG 60.990 66.667 6.32 0.00 45.00 5.87
831 839 4.436998 CCGGGGAGGATATCGCGC 62.437 72.222 0.00 0.00 45.00 6.86
832 840 3.680786 CGGGGAGGATATCGCGCA 61.681 66.667 8.75 0.00 41.71 6.09
919 927 4.148825 AGTGATCACGCCGCCTCC 62.149 66.667 19.85 0.00 36.20 4.30
922 930 4.593864 GATCACGCCGCCTCCCTC 62.594 72.222 0.00 0.00 0.00 4.30
1220 1235 4.202245 TGCCCACAACTAGAACAGATAC 57.798 45.455 0.00 0.00 0.00 2.24
1258 1273 3.576982 GGATGTCCGTCCTAACATATGGA 59.423 47.826 7.80 0.00 36.28 3.41
1259 1274 4.223032 GGATGTCCGTCCTAACATATGGAT 59.777 45.833 7.80 0.00 36.28 3.41
1262 1277 6.280855 TGTCCGTCCTAACATATGGATATG 57.719 41.667 7.80 5.28 44.37 1.78
1518 1542 1.429148 GATGAACATGGTCGGGTCGC 61.429 60.000 6.21 0.00 0.00 5.19
1714 1738 6.017400 TCGTCATCGAGGTAAAACTAAACT 57.983 37.500 0.00 0.00 41.35 2.66
1715 1739 6.088824 TCGTCATCGAGGTAAAACTAAACTC 58.911 40.000 0.00 0.00 41.35 3.01
1716 1740 5.287992 CGTCATCGAGGTAAAACTAAACTCC 59.712 44.000 0.00 0.00 39.71 3.85
1717 1741 6.161381 GTCATCGAGGTAAAACTAAACTCCA 58.839 40.000 0.00 0.00 0.00 3.86
1718 1742 6.817140 GTCATCGAGGTAAAACTAAACTCCAT 59.183 38.462 0.00 0.00 0.00 3.41
1719 1743 7.333672 GTCATCGAGGTAAAACTAAACTCCATT 59.666 37.037 0.00 0.00 0.00 3.16
1720 1744 7.333423 TCATCGAGGTAAAACTAAACTCCATTG 59.667 37.037 0.00 0.00 0.00 2.82
1721 1745 5.410439 TCGAGGTAAAACTAAACTCCATTGC 59.590 40.000 0.00 0.00 0.00 3.56
1722 1746 5.411669 CGAGGTAAAACTAAACTCCATTGCT 59.588 40.000 0.00 0.00 0.00 3.91
1725 1749 7.459234 AGGTAAAACTAAACTCCATTGCTACT 58.541 34.615 0.00 0.00 0.00 2.57
1726 1750 8.599792 AGGTAAAACTAAACTCCATTGCTACTA 58.400 33.333 0.00 0.00 0.00 1.82
1727 1751 9.392259 GGTAAAACTAAACTCCATTGCTACTAT 57.608 33.333 0.00 0.00 0.00 2.12
1730 1754 9.515226 AAAACTAAACTCCATTGCTACTATGAA 57.485 29.630 0.00 0.00 0.00 2.57
1731 1755 8.723942 AACTAAACTCCATTGCTACTATGAAG 57.276 34.615 0.00 0.00 0.00 3.02
1733 1757 5.365021 AACTCCATTGCTACTATGAAGCT 57.635 39.130 0.00 0.00 40.73 3.74
1734 1758 5.365021 ACTCCATTGCTACTATGAAGCTT 57.635 39.130 0.00 0.00 40.73 3.74
1735 1759 5.121811 ACTCCATTGCTACTATGAAGCTTG 58.878 41.667 2.10 0.00 40.73 4.01
1738 1762 4.497006 CCATTGCTACTATGAAGCTTGCAC 60.497 45.833 2.10 0.00 40.73 4.57
1751 1775 4.440181 TGCACGTACGGCAAAAGA 57.560 50.000 23.20 5.56 38.54 2.52
1767 1809 2.732001 AAGAAAACTGAACGTGTCGC 57.268 45.000 0.00 0.00 0.00 5.19
1832 1875 2.739996 CGGGAAGCATCTCCAGGCT 61.740 63.158 2.38 0.00 43.46 4.58
1856 1899 2.679059 CGCCAAGAAGGTCATCATCACT 60.679 50.000 0.00 0.00 40.61 3.41
1898 1941 3.058160 CCCACCTACGTCGTCGGT 61.058 66.667 15.36 15.36 41.85 4.69
1918 1961 2.202570 CAACGAGGGCGACTACGG 60.203 66.667 11.54 0.00 41.64 4.02
1950 1993 5.577164 GTCGCCAACATCATCAGGTATATAC 59.423 44.000 4.14 4.14 0.00 1.47
1951 1994 4.870426 CGCCAACATCATCAGGTATATACC 59.130 45.833 22.39 22.39 46.82 2.73
1979 2035 3.523606 TTTTTGTGCTGCAATCAGTGT 57.476 38.095 2.77 0.00 42.29 3.55
2015 2074 5.474876 ACCAAATTGATCAACTCTGTTCCTC 59.525 40.000 11.07 0.00 0.00 3.71
2548 2626 3.362399 CTCCACCAGCATCGACGCT 62.362 63.158 0.00 0.00 45.21 5.07
2883 2966 1.607756 TGAGAGCTCGGAGGTTGCT 60.608 57.895 11.50 4.65 40.02 3.91
3077 3162 4.713792 AATTGACCCTTCTTCTGTGAGT 57.286 40.909 0.00 0.00 0.00 3.41
3110 3196 7.002250 ACTCCATATATTCAGATGTGTCAGG 57.998 40.000 0.00 0.00 0.00 3.86
3130 3216 2.554462 GGCTTTCTCTTGGGACTTTCAC 59.446 50.000 0.00 0.00 0.00 3.18
3438 3527 7.633789 AGTAAGAATGGATTACTGACATTGGT 58.366 34.615 0.00 0.00 40.94 3.67
3440 3529 9.561069 GTAAGAATGGATTACTGACATTGGTAT 57.439 33.333 0.00 0.00 35.17 2.73
3511 3600 5.895928 TGCACACAACTTTGCACTAAAATA 58.104 33.333 0.00 0.00 43.79 1.40
3515 3604 5.977129 ACACAACTTTGCACTAAAATAGCAC 59.023 36.000 0.00 0.00 38.11 4.40
3525 3614 7.936584 TGCACTAAAATAGCACTTTTTGTAGT 58.063 30.769 9.30 2.81 34.06 2.73
3574 3663 9.855021 ATAATAAAGCAATTTTCACACTGTACC 57.145 29.630 0.00 0.00 0.00 3.34
3576 3665 3.211045 AGCAATTTTCACACTGTACCGT 58.789 40.909 0.00 0.00 0.00 4.83
3591 3680 7.329226 ACACTGTACCGTAATTTACACACATAC 59.671 37.037 7.31 2.82 0.00 2.39
3600 3689 9.459640 CGTAATTTACACACATACTGTATAGCT 57.540 33.333 7.31 0.00 0.00 3.32
3631 3721 8.836268 TTTAGAGTAACCACACGTTTATTGAT 57.164 30.769 0.00 0.00 35.79 2.57
3639 3729 6.378582 ACCACACGTTTATTGATCACAAATC 58.621 36.000 0.00 0.00 39.54 2.17
3658 3748 6.204688 ACAAATCTGATGAATACAACACACGT 59.795 34.615 0.00 0.00 0.00 4.49
3660 3750 6.887376 ATCTGATGAATACAACACACGTAC 57.113 37.500 0.00 0.00 0.00 3.67
3661 3751 4.854839 TCTGATGAATACAACACACGTACG 59.145 41.667 15.01 15.01 0.00 3.67
3687 3777 3.427309 GACAAGAAGGGTCGAGAGC 57.573 57.895 0.00 0.00 0.00 4.09
3693 3783 1.149148 GAAGGGTCGAGAGCAAACAC 58.851 55.000 4.64 0.00 0.00 3.32
3703 3793 0.304705 GAGCAAACACGTGTCCACAG 59.695 55.000 23.61 11.11 0.00 3.66
3704 3794 1.095228 AGCAAACACGTGTCCACAGG 61.095 55.000 23.61 9.01 37.71 4.00
3708 3798 1.375551 AACACGTGTCCACAGGAAAC 58.624 50.000 23.61 0.00 36.63 2.78
3730 3820 4.466015 ACTGCAGAAAAACCTTCCAAGAAA 59.534 37.500 23.35 0.00 0.00 2.52
3732 3822 5.418676 TGCAGAAAAACCTTCCAAGAAAAG 58.581 37.500 0.00 0.00 0.00 2.27
3742 3832 7.855784 ACCTTCCAAGAAAAGGAAAATACAT 57.144 32.000 8.81 0.00 45.15 2.29
3743 3833 7.896811 ACCTTCCAAGAAAAGGAAAATACATC 58.103 34.615 8.81 0.00 45.15 3.06
3777 3868 2.202690 CCGCAATAGCCGTCGTCA 60.203 61.111 0.00 0.00 37.52 4.35
3779 3870 2.514013 CGCAATAGCCGTCGTCACC 61.514 63.158 0.00 0.00 37.52 4.02
3788 3879 0.248907 CCGTCGTCACCGCTGAATAT 60.249 55.000 0.00 0.00 0.00 1.28
3789 3880 1.121240 CGTCGTCACCGCTGAATATC 58.879 55.000 0.00 0.00 0.00 1.63
3790 3881 1.121240 GTCGTCACCGCTGAATATCG 58.879 55.000 0.00 0.00 0.00 2.92
3791 3882 0.594028 TCGTCACCGCTGAATATCGC 60.594 55.000 0.00 0.00 0.00 4.58
3792 3883 1.548973 CGTCACCGCTGAATATCGCC 61.549 60.000 0.00 0.00 0.00 5.54
3793 3884 1.299850 TCACCGCTGAATATCGCCG 60.300 57.895 0.00 0.00 0.00 6.46
3794 3885 2.029073 ACCGCTGAATATCGCCGG 59.971 61.111 0.00 0.00 0.00 6.13
3795 3886 2.338620 CCGCTGAATATCGCCGGA 59.661 61.111 5.05 0.00 0.00 5.14
3796 3887 1.079819 CCGCTGAATATCGCCGGAT 60.080 57.895 5.05 0.00 36.65 4.18
3797 3888 0.670546 CCGCTGAATATCGCCGGATT 60.671 55.000 5.05 0.00 34.00 3.01
3798 3889 1.148310 CGCTGAATATCGCCGGATTT 58.852 50.000 5.05 0.00 34.00 2.17
3799 3890 1.136252 CGCTGAATATCGCCGGATTTG 60.136 52.381 5.05 0.00 34.00 2.32
3800 3891 2.143122 GCTGAATATCGCCGGATTTGA 58.857 47.619 5.05 0.00 34.00 2.69
3801 3892 2.548057 GCTGAATATCGCCGGATTTGAA 59.452 45.455 5.05 0.00 34.00 2.69
3802 3893 3.364366 GCTGAATATCGCCGGATTTGAAG 60.364 47.826 5.05 0.00 34.00 3.02
3803 3894 3.138304 TGAATATCGCCGGATTTGAAGG 58.862 45.455 5.05 0.00 34.00 3.46
3804 3895 3.181459 TGAATATCGCCGGATTTGAAGGA 60.181 43.478 5.05 0.00 34.00 3.36
3805 3896 2.526304 TATCGCCGGATTTGAAGGAG 57.474 50.000 5.05 0.00 34.00 3.69
3806 3897 0.830648 ATCGCCGGATTTGAAGGAGA 59.169 50.000 5.05 0.00 38.18 3.71
3807 3898 0.611200 TCGCCGGATTTGAAGGAGAA 59.389 50.000 5.05 0.00 31.10 2.87
3808 3899 0.727398 CGCCGGATTTGAAGGAGAAC 59.273 55.000 5.05 0.00 0.00 3.01
3809 3900 1.095600 GCCGGATTTGAAGGAGAACC 58.904 55.000 5.05 0.00 0.00 3.62
3810 3901 1.613255 GCCGGATTTGAAGGAGAACCA 60.613 52.381 5.05 0.00 38.94 3.67
3811 3902 2.945890 GCCGGATTTGAAGGAGAACCAT 60.946 50.000 5.05 0.00 38.94 3.55
3812 3903 3.684413 GCCGGATTTGAAGGAGAACCATA 60.684 47.826 5.05 0.00 38.94 2.74
3813 3904 4.130118 CCGGATTTGAAGGAGAACCATAG 58.870 47.826 0.00 0.00 38.94 2.23
3814 3905 3.561725 CGGATTTGAAGGAGAACCATAGC 59.438 47.826 0.00 0.00 38.94 2.97
3815 3906 3.885901 GGATTTGAAGGAGAACCATAGCC 59.114 47.826 0.00 0.00 38.94 3.93
3816 3907 3.366052 TTTGAAGGAGAACCATAGCCC 57.634 47.619 0.00 0.00 38.94 5.19
3817 3908 1.965414 TGAAGGAGAACCATAGCCCA 58.035 50.000 0.00 0.00 38.94 5.36
3818 3909 2.492025 TGAAGGAGAACCATAGCCCAT 58.508 47.619 0.00 0.00 38.94 4.00
3819 3910 2.173356 TGAAGGAGAACCATAGCCCATG 59.827 50.000 0.00 0.00 38.94 3.66
3820 3911 2.196742 AGGAGAACCATAGCCCATGA 57.803 50.000 0.00 0.00 36.69 3.07
3821 3912 2.711174 AGGAGAACCATAGCCCATGAT 58.289 47.619 0.00 0.00 36.69 2.45
3822 3913 2.374504 AGGAGAACCATAGCCCATGATG 59.625 50.000 0.00 0.00 36.69 3.07
3823 3914 2.553904 GGAGAACCATAGCCCATGATGG 60.554 54.545 3.98 3.98 46.88 3.51
3830 3921 2.491152 GCCCATGATGGCGTTGTG 59.509 61.111 5.79 0.00 42.54 3.33
3831 3922 2.045708 GCCCATGATGGCGTTGTGA 61.046 57.895 5.79 0.00 42.54 3.58
3832 3923 1.996786 GCCCATGATGGCGTTGTGAG 61.997 60.000 5.79 0.00 42.54 3.51
3833 3924 0.677731 CCCATGATGGCGTTGTGAGT 60.678 55.000 5.79 0.00 35.79 3.41
3834 3925 0.729116 CCATGATGGCGTTGTGAGTC 59.271 55.000 0.00 0.00 0.00 3.36
3835 3926 0.371301 CATGATGGCGTTGTGAGTCG 59.629 55.000 0.00 0.00 0.00 4.18
3836 3927 0.246360 ATGATGGCGTTGTGAGTCGA 59.754 50.000 0.00 0.00 0.00 4.20
3837 3928 0.246360 TGATGGCGTTGTGAGTCGAT 59.754 50.000 0.00 0.00 0.00 3.59
3838 3929 0.647410 GATGGCGTTGTGAGTCGATG 59.353 55.000 0.00 0.00 0.00 3.84
3839 3930 0.246360 ATGGCGTTGTGAGTCGATGA 59.754 50.000 0.00 0.00 0.00 2.92
3840 3931 0.032815 TGGCGTTGTGAGTCGATGAA 59.967 50.000 0.00 0.00 0.00 2.57
3841 3932 0.716108 GGCGTTGTGAGTCGATGAAG 59.284 55.000 0.00 0.00 0.00 3.02
3842 3933 1.668919 GGCGTTGTGAGTCGATGAAGA 60.669 52.381 0.00 0.00 0.00 2.87
3843 3934 2.058798 GCGTTGTGAGTCGATGAAGAA 58.941 47.619 0.00 0.00 0.00 2.52
3844 3935 2.091277 GCGTTGTGAGTCGATGAAGAAG 59.909 50.000 0.00 0.00 0.00 2.85
3845 3936 2.091277 CGTTGTGAGTCGATGAAGAAGC 59.909 50.000 0.00 0.00 0.00 3.86
3846 3937 3.321497 GTTGTGAGTCGATGAAGAAGCT 58.679 45.455 0.00 0.00 0.00 3.74
3847 3938 3.667497 TGTGAGTCGATGAAGAAGCTT 57.333 42.857 0.00 0.00 0.00 3.74
3848 3939 3.320626 TGTGAGTCGATGAAGAAGCTTG 58.679 45.455 2.10 0.00 0.00 4.01
3849 3940 2.093467 GTGAGTCGATGAAGAAGCTTGC 59.907 50.000 2.10 0.00 0.00 4.01
3850 3941 1.663135 GAGTCGATGAAGAAGCTTGCC 59.337 52.381 2.10 0.00 0.00 4.52
3851 3942 1.002430 AGTCGATGAAGAAGCTTGCCA 59.998 47.619 2.10 0.00 0.00 4.92
3852 3943 2.012673 GTCGATGAAGAAGCTTGCCAT 58.987 47.619 2.10 3.98 0.00 4.40
3853 3944 2.031437 GTCGATGAAGAAGCTTGCCATC 59.969 50.000 2.10 12.28 0.00 3.51
3854 3945 1.004185 CGATGAAGAAGCTTGCCATCG 60.004 52.381 26.09 26.09 46.46 3.84
3855 3946 1.332997 GATGAAGAAGCTTGCCATCGG 59.667 52.381 2.10 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.606961 CGTGCACGCCTGTTGATGT 61.607 57.895 28.16 0.00 0.00 3.06
12 13 1.667177 CCTATATCTCCAGCGTGCACG 60.667 57.143 34.01 34.01 43.27 5.34
13 14 1.341531 ACCTATATCTCCAGCGTGCAC 59.658 52.381 6.82 6.82 0.00 4.57
14 15 1.613925 GACCTATATCTCCAGCGTGCA 59.386 52.381 0.00 0.00 0.00 4.57
15 16 1.613925 TGACCTATATCTCCAGCGTGC 59.386 52.381 0.00 0.00 0.00 5.34
16 17 2.352225 GCTGACCTATATCTCCAGCGTG 60.352 54.545 0.00 0.00 40.40 5.34
17 18 1.889829 GCTGACCTATATCTCCAGCGT 59.110 52.381 0.00 0.00 40.40 5.07
18 19 2.645730 GCTGACCTATATCTCCAGCG 57.354 55.000 0.00 0.00 40.40 5.18
19 20 1.203523 CGGCTGACCTATATCTCCAGC 59.796 57.143 0.00 0.00 46.71 4.85
20 21 1.821753 CCGGCTGACCTATATCTCCAG 59.178 57.143 0.00 0.00 0.00 3.86
21 22 1.427753 TCCGGCTGACCTATATCTCCA 59.572 52.381 0.00 0.00 0.00 3.86
22 23 2.096248 CTCCGGCTGACCTATATCTCC 58.904 57.143 0.00 0.00 0.00 3.71
23 24 2.096248 CCTCCGGCTGACCTATATCTC 58.904 57.143 0.00 0.00 0.00 2.75
24 25 1.429687 ACCTCCGGCTGACCTATATCT 59.570 52.381 0.00 0.00 0.00 1.98
25 26 1.926108 ACCTCCGGCTGACCTATATC 58.074 55.000 0.00 0.00 0.00 1.63
26 27 1.971357 CAACCTCCGGCTGACCTATAT 59.029 52.381 0.00 0.00 0.00 0.86
27 28 1.342674 ACAACCTCCGGCTGACCTATA 60.343 52.381 0.00 0.00 0.00 1.31
28 29 0.617820 ACAACCTCCGGCTGACCTAT 60.618 55.000 0.00 0.00 0.00 2.57
29 30 1.229082 ACAACCTCCGGCTGACCTA 60.229 57.895 0.00 0.00 0.00 3.08
30 31 2.526873 ACAACCTCCGGCTGACCT 60.527 61.111 0.00 0.00 0.00 3.85
31 32 2.358737 CACAACCTCCGGCTGACC 60.359 66.667 0.00 0.00 0.00 4.02
32 33 3.050275 GCACAACCTCCGGCTGAC 61.050 66.667 0.00 0.00 0.00 3.51
33 34 2.803155 GATGCACAACCTCCGGCTGA 62.803 60.000 0.00 0.00 0.00 4.26
34 35 2.360350 ATGCACAACCTCCGGCTG 60.360 61.111 0.00 0.00 0.00 4.85
35 36 2.045926 GATGCACAACCTCCGGCT 60.046 61.111 0.00 0.00 0.00 5.52
36 37 3.499737 CGATGCACAACCTCCGGC 61.500 66.667 0.00 0.00 0.00 6.13
37 38 2.047274 ACGATGCACAACCTCCGG 60.047 61.111 0.00 0.00 0.00 5.14
38 39 3.027170 GCACGATGCACAACCTCCG 62.027 63.158 0.00 0.00 44.26 4.63
39 40 2.870372 GCACGATGCACAACCTCC 59.130 61.111 0.00 0.00 44.26 4.30
48 49 3.490759 CCTGTCCGTGCACGATGC 61.491 66.667 39.10 26.25 45.29 3.91
49 50 1.374125 TTCCTGTCCGTGCACGATG 60.374 57.895 39.10 23.76 43.02 3.84
50 51 1.374252 GTTCCTGTCCGTGCACGAT 60.374 57.895 39.10 0.00 43.02 3.73
51 52 2.028484 GTTCCTGTCCGTGCACGA 59.972 61.111 39.10 22.39 43.02 4.35
52 53 3.403057 CGTTCCTGTCCGTGCACG 61.403 66.667 31.77 31.77 39.44 5.34
53 54 3.712881 GCGTTCCTGTCCGTGCAC 61.713 66.667 6.82 6.82 0.00 4.57
54 55 3.454587 AAGCGTTCCTGTCCGTGCA 62.455 57.895 0.00 0.00 0.00 4.57
55 56 2.665185 AAGCGTTCCTGTCCGTGC 60.665 61.111 0.00 0.00 0.00 5.34
56 57 1.284982 CTGAAGCGTTCCTGTCCGTG 61.285 60.000 0.00 0.00 0.00 4.94
57 58 1.006102 CTGAAGCGTTCCTGTCCGT 60.006 57.895 0.00 0.00 0.00 4.69
58 59 0.108615 ATCTGAAGCGTTCCTGTCCG 60.109 55.000 0.00 0.00 0.00 4.79
59 60 1.205893 AGATCTGAAGCGTTCCTGTCC 59.794 52.381 0.00 0.00 0.00 4.02
60 61 2.094494 TCAGATCTGAAGCGTTCCTGTC 60.094 50.000 23.17 0.00 36.53 3.51
61 62 1.895798 TCAGATCTGAAGCGTTCCTGT 59.104 47.619 23.17 0.00 36.53 4.00
62 63 2.266554 GTCAGATCTGAAGCGTTCCTG 58.733 52.381 26.70 0.00 41.85 3.86
63 64 1.895798 TGTCAGATCTGAAGCGTTCCT 59.104 47.619 26.70 0.00 41.85 3.36
64 65 2.266554 CTGTCAGATCTGAAGCGTTCC 58.733 52.381 26.70 12.96 41.85 3.62
65 66 2.266554 CCTGTCAGATCTGAAGCGTTC 58.733 52.381 26.70 13.66 41.85 3.95
66 67 1.066573 CCCTGTCAGATCTGAAGCGTT 60.067 52.381 26.70 0.00 41.85 4.84
67 68 0.534412 CCCTGTCAGATCTGAAGCGT 59.466 55.000 26.70 0.00 41.85 5.07
68 69 0.179089 CCCCTGTCAGATCTGAAGCG 60.179 60.000 26.70 16.56 41.85 4.68
69 70 1.138661 CTCCCCTGTCAGATCTGAAGC 59.861 57.143 26.70 15.80 41.85 3.86
70 71 1.138661 GCTCCCCTGTCAGATCTGAAG 59.861 57.143 26.70 22.39 41.85 3.02
71 72 1.198713 GCTCCCCTGTCAGATCTGAA 58.801 55.000 26.70 15.42 41.85 3.02
72 73 0.337773 AGCTCCCCTGTCAGATCTGA 59.662 55.000 21.67 21.67 37.24 3.27
73 74 0.752054 GAGCTCCCCTGTCAGATCTG 59.248 60.000 17.07 17.07 0.00 2.90
74 75 0.754957 CGAGCTCCCCTGTCAGATCT 60.755 60.000 8.47 0.00 0.00 2.75
75 76 1.739049 CGAGCTCCCCTGTCAGATC 59.261 63.158 8.47 0.00 0.00 2.75
76 77 1.760086 CCGAGCTCCCCTGTCAGAT 60.760 63.158 8.47 0.00 0.00 2.90
77 78 2.363018 CCGAGCTCCCCTGTCAGA 60.363 66.667 8.47 0.00 0.00 3.27
78 79 3.465403 CCCGAGCTCCCCTGTCAG 61.465 72.222 8.47 0.00 0.00 3.51
102 103 3.953775 AGCAAGGTCCCGGTGTGG 61.954 66.667 0.00 0.00 37.55 4.17
103 104 2.669569 CAGCAAGGTCCCGGTGTG 60.670 66.667 0.00 0.00 0.00 3.82
104 105 4.643387 GCAGCAAGGTCCCGGTGT 62.643 66.667 0.00 0.00 33.22 4.16
122 123 4.218578 ATCTCCTCGGCTGCGCAG 62.219 66.667 32.83 32.83 0.00 5.18
123 124 4.212913 GATCTCCTCGGCTGCGCA 62.213 66.667 10.98 10.98 0.00 6.09
124 125 3.910490 AGATCTCCTCGGCTGCGC 61.910 66.667 0.00 0.00 0.00 6.09
125 126 2.027314 CAGATCTCCTCGGCTGCG 59.973 66.667 0.00 0.00 0.00 5.18
126 127 1.067250 GTCAGATCTCCTCGGCTGC 59.933 63.158 0.00 0.00 0.00 5.25
127 128 1.039785 TGGTCAGATCTCCTCGGCTG 61.040 60.000 0.00 0.00 0.00 4.85
128 129 0.324738 TTGGTCAGATCTCCTCGGCT 60.325 55.000 0.00 0.00 0.00 5.52
129 130 0.179097 GTTGGTCAGATCTCCTCGGC 60.179 60.000 0.00 0.00 0.00 5.54
130 131 0.461961 GGTTGGTCAGATCTCCTCGG 59.538 60.000 0.00 0.00 0.00 4.63
131 132 1.407258 GAGGTTGGTCAGATCTCCTCG 59.593 57.143 9.46 0.00 33.44 4.63
132 133 2.167487 GTGAGGTTGGTCAGATCTCCTC 59.833 54.545 15.71 15.71 41.00 3.71
133 134 2.183679 GTGAGGTTGGTCAGATCTCCT 58.816 52.381 0.00 0.00 0.00 3.69
134 135 1.208293 GGTGAGGTTGGTCAGATCTCC 59.792 57.143 0.00 0.00 0.00 3.71
135 136 1.134965 CGGTGAGGTTGGTCAGATCTC 60.135 57.143 0.00 0.00 0.00 2.75
136 137 0.898320 CGGTGAGGTTGGTCAGATCT 59.102 55.000 0.00 0.00 0.00 2.75
137 138 0.895530 TCGGTGAGGTTGGTCAGATC 59.104 55.000 0.00 0.00 0.00 2.75
138 139 0.608640 GTCGGTGAGGTTGGTCAGAT 59.391 55.000 0.00 0.00 0.00 2.90
139 140 1.802337 CGTCGGTGAGGTTGGTCAGA 61.802 60.000 0.00 0.00 0.00 3.27
140 141 1.372997 CGTCGGTGAGGTTGGTCAG 60.373 63.158 0.00 0.00 0.00 3.51
141 142 1.802337 CTCGTCGGTGAGGTTGGTCA 61.802 60.000 0.00 0.00 32.18 4.02
142 143 1.080705 CTCGTCGGTGAGGTTGGTC 60.081 63.158 0.00 0.00 32.18 4.02
143 144 3.048602 CTCGTCGGTGAGGTTGGT 58.951 61.111 0.00 0.00 32.18 3.67
144 145 2.432628 GCTCGTCGGTGAGGTTGG 60.433 66.667 6.90 0.00 36.47 3.77
145 146 2.432628 GGCTCGTCGGTGAGGTTG 60.433 66.667 6.90 0.00 36.47 3.77
146 147 3.692406 GGGCTCGTCGGTGAGGTT 61.692 66.667 6.90 0.00 36.47 3.50
149 150 4.436998 GTGGGGCTCGTCGGTGAG 62.437 72.222 0.00 1.05 39.05 3.51
161 162 3.534056 CTACGGTAGCGGGTGGGG 61.534 72.222 19.72 0.00 0.00 4.96
162 163 3.534056 CCTACGGTAGCGGGTGGG 61.534 72.222 19.72 6.10 0.00 4.61
163 164 2.440796 TCCTACGGTAGCGGGTGG 60.441 66.667 19.72 16.18 0.00 4.61
164 165 3.117372 CTCCTACGGTAGCGGGTG 58.883 66.667 19.72 8.16 0.00 4.61
165 166 2.832201 GCTCCTACGGTAGCGGGT 60.832 66.667 19.72 0.45 0.00 5.28
166 167 2.143594 GATGCTCCTACGGTAGCGGG 62.144 65.000 19.72 11.18 41.77 6.13
167 168 1.286260 GATGCTCCTACGGTAGCGG 59.714 63.158 19.72 1.12 41.77 5.52
168 169 1.082038 CGATGCTCCTACGGTAGCG 60.082 63.158 13.69 13.69 41.77 4.26
169 170 0.040246 GACGATGCTCCTACGGTAGC 60.040 60.000 9.70 1.98 39.25 3.58
170 171 0.592148 GGACGATGCTCCTACGGTAG 59.408 60.000 8.22 8.22 0.00 3.18
171 172 0.182061 AGGACGATGCTCCTACGGTA 59.818 55.000 0.00 0.00 39.06 4.02
172 173 1.076923 AGGACGATGCTCCTACGGT 60.077 57.895 0.00 0.00 39.06 4.83
173 174 1.101635 TGAGGACGATGCTCCTACGG 61.102 60.000 0.00 0.00 41.11 4.02
174 175 0.029567 GTGAGGACGATGCTCCTACG 59.970 60.000 0.00 0.00 41.11 3.51
175 176 0.386113 GGTGAGGACGATGCTCCTAC 59.614 60.000 0.00 0.00 41.11 3.18
176 177 0.033503 TGGTGAGGACGATGCTCCTA 60.034 55.000 0.00 0.00 41.11 2.94
177 178 1.305297 TGGTGAGGACGATGCTCCT 60.305 57.895 0.00 0.00 44.00 3.69
178 179 1.153549 GTGGTGAGGACGATGCTCC 60.154 63.158 0.00 0.00 33.54 4.70
179 180 0.737715 GTGTGGTGAGGACGATGCTC 60.738 60.000 0.00 0.00 35.21 4.26
180 181 1.293498 GTGTGGTGAGGACGATGCT 59.707 57.895 0.00 0.00 0.00 3.79
181 182 1.741770 GGTGTGGTGAGGACGATGC 60.742 63.158 0.00 0.00 0.00 3.91
182 183 0.034756 TTGGTGTGGTGAGGACGATG 59.965 55.000 0.00 0.00 0.00 3.84
183 184 0.984230 ATTGGTGTGGTGAGGACGAT 59.016 50.000 0.00 0.00 0.00 3.73
184 185 0.034756 CATTGGTGTGGTGAGGACGA 59.965 55.000 0.00 0.00 0.00 4.20
185 186 1.577328 GCATTGGTGTGGTGAGGACG 61.577 60.000 0.00 0.00 0.00 4.79
186 187 1.244019 GGCATTGGTGTGGTGAGGAC 61.244 60.000 0.00 0.00 0.00 3.85
187 188 1.074775 GGCATTGGTGTGGTGAGGA 59.925 57.895 0.00 0.00 0.00 3.71
188 189 2.334946 CGGCATTGGTGTGGTGAGG 61.335 63.158 0.00 0.00 0.00 3.86
189 190 2.981560 GCGGCATTGGTGTGGTGAG 61.982 63.158 0.00 0.00 0.00 3.51
190 191 2.983030 GCGGCATTGGTGTGGTGA 60.983 61.111 0.00 0.00 0.00 4.02
191 192 4.054825 GGCGGCATTGGTGTGGTG 62.055 66.667 3.07 0.00 0.00 4.17
200 201 4.181010 ATCTGAGGCGGCGGCATT 62.181 61.111 34.87 16.28 42.47 3.56
201 202 4.615815 GATCTGAGGCGGCGGCAT 62.616 66.667 34.87 19.71 42.47 4.40
204 205 4.598894 CTGGATCTGAGGCGGCGG 62.599 72.222 9.78 0.00 0.00 6.13
205 206 4.598894 CCTGGATCTGAGGCGGCG 62.599 72.222 0.51 0.51 0.00 6.46
206 207 4.925861 GCCTGGATCTGAGGCGGC 62.926 72.222 17.23 0.00 46.47 6.53
210 211 1.383664 TGAGGGCCTGGATCTGAGG 60.384 63.158 12.95 6.90 0.00 3.86
211 212 1.694133 GGTGAGGGCCTGGATCTGAG 61.694 65.000 12.95 0.00 0.00 3.35
212 213 1.690633 GGTGAGGGCCTGGATCTGA 60.691 63.158 12.95 0.00 0.00 3.27
213 214 1.351080 ATGGTGAGGGCCTGGATCTG 61.351 60.000 12.95 0.00 0.00 2.90
214 215 1.005289 ATGGTGAGGGCCTGGATCT 59.995 57.895 12.95 0.00 0.00 2.75
215 216 1.453669 GATGGTGAGGGCCTGGATC 59.546 63.158 12.95 2.63 0.00 3.36
216 217 2.446848 CGATGGTGAGGGCCTGGAT 61.447 63.158 12.95 0.00 0.00 3.41
217 218 3.083349 CGATGGTGAGGGCCTGGA 61.083 66.667 12.95 0.00 0.00 3.86
218 219 2.196997 TTTCGATGGTGAGGGCCTGG 62.197 60.000 12.95 0.00 0.00 4.45
219 220 0.745845 CTTTCGATGGTGAGGGCCTG 60.746 60.000 12.95 0.00 0.00 4.85
220 221 1.604378 CTTTCGATGGTGAGGGCCT 59.396 57.895 5.25 5.25 0.00 5.19
221 222 1.452108 CCTTTCGATGGTGAGGGCC 60.452 63.158 0.00 0.00 0.00 5.80
222 223 1.452108 CCCTTTCGATGGTGAGGGC 60.452 63.158 5.53 0.00 42.18 5.19
223 224 4.963878 CCCTTTCGATGGTGAGGG 57.036 61.111 4.38 4.38 42.66 4.30
224 225 0.905357 ACTCCCTTTCGATGGTGAGG 59.095 55.000 18.31 9.03 0.00 3.86
225 226 1.406069 CCACTCCCTTTCGATGGTGAG 60.406 57.143 15.27 15.27 0.00 3.51
226 227 0.613260 CCACTCCCTTTCGATGGTGA 59.387 55.000 4.59 1.74 0.00 4.02
227 228 0.613260 TCCACTCCCTTTCGATGGTG 59.387 55.000 0.00 0.00 0.00 4.17
228 229 0.613777 GTCCACTCCCTTTCGATGGT 59.386 55.000 0.00 0.00 0.00 3.55
229 230 0.460284 CGTCCACTCCCTTTCGATGG 60.460 60.000 0.00 0.00 0.00 3.51
230 231 0.530744 TCGTCCACTCCCTTTCGATG 59.469 55.000 0.00 0.00 0.00 3.84
231 232 1.204941 CTTCGTCCACTCCCTTTCGAT 59.795 52.381 0.00 0.00 0.00 3.59
232 233 0.601558 CTTCGTCCACTCCCTTTCGA 59.398 55.000 0.00 0.00 0.00 3.71
233 234 0.601558 TCTTCGTCCACTCCCTTTCG 59.398 55.000 0.00 0.00 0.00 3.46
234 235 1.337917 GGTCTTCGTCCACTCCCTTTC 60.338 57.143 0.00 0.00 0.00 2.62
235 236 0.685660 GGTCTTCGTCCACTCCCTTT 59.314 55.000 0.00 0.00 0.00 3.11
236 237 0.178929 AGGTCTTCGTCCACTCCCTT 60.179 55.000 0.00 0.00 0.00 3.95
237 238 0.178929 AAGGTCTTCGTCCACTCCCT 60.179 55.000 0.00 0.00 0.00 4.20
238 239 0.037232 CAAGGTCTTCGTCCACTCCC 60.037 60.000 0.00 0.00 0.00 4.30
239 240 0.670854 GCAAGGTCTTCGTCCACTCC 60.671 60.000 0.00 0.00 0.00 3.85
240 241 0.670854 GGCAAGGTCTTCGTCCACTC 60.671 60.000 0.00 0.00 0.00 3.51
241 242 1.371558 GGCAAGGTCTTCGTCCACT 59.628 57.895 0.00 0.00 0.00 4.00
242 243 2.027625 CGGCAAGGTCTTCGTCCAC 61.028 63.158 0.00 0.00 0.00 4.02
243 244 2.342279 CGGCAAGGTCTTCGTCCA 59.658 61.111 0.00 0.00 0.00 4.02
244 245 3.119096 GCGGCAAGGTCTTCGTCC 61.119 66.667 0.00 0.00 0.00 4.79
245 246 3.119096 GGCGGCAAGGTCTTCGTC 61.119 66.667 3.07 0.00 0.00 4.20
246 247 3.936203 TGGCGGCAAGGTCTTCGT 61.936 61.111 10.22 0.00 0.00 3.85
247 248 3.423154 GTGGCGGCAAGGTCTTCG 61.423 66.667 15.50 0.00 0.00 3.79
248 249 3.056328 GGTGGCGGCAAGGTCTTC 61.056 66.667 15.50 0.00 0.00 2.87
249 250 4.660938 GGGTGGCGGCAAGGTCTT 62.661 66.667 15.50 0.00 0.00 3.01
254 255 4.335647 AGTGAGGGTGGCGGCAAG 62.336 66.667 15.50 0.00 0.00 4.01
255 256 4.641645 CAGTGAGGGTGGCGGCAA 62.642 66.667 15.50 0.00 0.00 4.52
261 262 4.394712 GGTCGCCAGTGAGGGTGG 62.395 72.222 0.00 0.00 38.97 4.61
262 263 4.742201 CGGTCGCCAGTGAGGGTG 62.742 72.222 0.00 0.00 39.85 4.61
280 281 4.463879 CCTCACCGCTGCCAGAGG 62.464 72.222 13.41 13.41 41.31 3.69
281 282 3.368190 CTCCTCACCGCTGCCAGAG 62.368 68.421 0.00 0.00 0.00 3.35
282 283 3.385384 CTCCTCACCGCTGCCAGA 61.385 66.667 0.00 0.00 0.00 3.86
283 284 2.849120 CTTCTCCTCACCGCTGCCAG 62.849 65.000 0.00 0.00 0.00 4.85
284 285 2.922503 TTCTCCTCACCGCTGCCA 60.923 61.111 0.00 0.00 0.00 4.92
285 286 2.125350 CTTCTCCTCACCGCTGCC 60.125 66.667 0.00 0.00 0.00 4.85
286 287 2.125350 CCTTCTCCTCACCGCTGC 60.125 66.667 0.00 0.00 0.00 5.25
287 288 2.581354 CCCTTCTCCTCACCGCTG 59.419 66.667 0.00 0.00 0.00 5.18
288 289 2.685380 CCCCTTCTCCTCACCGCT 60.685 66.667 0.00 0.00 0.00 5.52
289 290 3.787001 CCCCCTTCTCCTCACCGC 61.787 72.222 0.00 0.00 0.00 5.68
290 291 2.038975 TCCCCCTTCTCCTCACCG 59.961 66.667 0.00 0.00 0.00 4.94
291 292 1.690985 CCTCCCCCTTCTCCTCACC 60.691 68.421 0.00 0.00 0.00 4.02
292 293 1.690985 CCCTCCCCCTTCTCCTCAC 60.691 68.421 0.00 0.00 0.00 3.51
293 294 2.787866 CCCTCCCCCTTCTCCTCA 59.212 66.667 0.00 0.00 0.00 3.86
294 295 2.040359 CCCCTCCCCCTTCTCCTC 60.040 72.222 0.00 0.00 0.00 3.71
295 296 3.711782 CCCCCTCCCCCTTCTCCT 61.712 72.222 0.00 0.00 0.00 3.69
319 320 3.432051 CTAGGGTTCCTCCGCGCTG 62.432 68.421 5.56 0.00 34.61 5.18
320 321 3.148279 CTAGGGTTCCTCCGCGCT 61.148 66.667 5.56 0.00 34.61 5.92
321 322 4.222847 CCTAGGGTTCCTCCGCGC 62.223 72.222 0.00 0.00 34.61 6.86
322 323 2.758737 ACCTAGGGTTCCTCCGCG 60.759 66.667 14.81 0.00 34.61 6.46
323 324 2.783288 CGACCTAGGGTTCCTCCGC 61.783 68.421 14.81 0.00 35.25 5.54
324 325 2.783288 GCGACCTAGGGTTCCTCCG 61.783 68.421 14.81 5.85 35.25 4.63
325 326 2.433146 GGCGACCTAGGGTTCCTCC 61.433 68.421 14.81 2.00 35.25 4.30
326 327 3.218227 GGCGACCTAGGGTTCCTC 58.782 66.667 14.81 0.00 35.25 3.71
343 344 4.583254 CGCGTCGCTCTCTCGAGG 62.583 72.222 16.36 3.44 44.31 4.63
344 345 3.485639 CTCGCGTCGCTCTCTCGAG 62.486 68.421 16.36 5.93 39.34 4.04
345 346 3.555619 CTCGCGTCGCTCTCTCGA 61.556 66.667 16.36 2.81 35.95 4.04
347 348 2.859034 AAAGCTCGCGTCGCTCTCTC 62.859 60.000 21.77 0.00 36.56 3.20
348 349 2.479412 AAAAGCTCGCGTCGCTCTCT 62.479 55.000 21.77 5.94 36.56 3.10
349 350 2.089349 AAAAGCTCGCGTCGCTCTC 61.089 57.895 21.77 3.57 36.56 3.20
350 351 2.049063 AAAAGCTCGCGTCGCTCT 60.049 55.556 21.77 9.24 36.56 4.09
351 352 2.094724 CAAAAGCTCGCGTCGCTC 59.905 61.111 21.77 4.32 36.56 5.03
352 353 2.658707 GACAAAAGCTCGCGTCGCT 61.659 57.895 16.36 17.39 39.94 4.93
353 354 2.202058 GACAAAAGCTCGCGTCGC 60.202 61.111 7.29 7.29 0.00 5.19
354 355 1.626654 ATGGACAAAAGCTCGCGTCG 61.627 55.000 5.77 0.00 0.00 5.12
355 356 0.517316 AATGGACAAAAGCTCGCGTC 59.483 50.000 5.77 0.00 0.00 5.19
356 357 0.951558 AAATGGACAAAAGCTCGCGT 59.048 45.000 5.77 0.00 0.00 6.01
357 358 1.978782 GAAAATGGACAAAAGCTCGCG 59.021 47.619 0.00 0.00 0.00 5.87
358 359 2.982470 CAGAAAATGGACAAAAGCTCGC 59.018 45.455 0.00 0.00 0.00 5.03
359 360 2.982470 GCAGAAAATGGACAAAAGCTCG 59.018 45.455 0.00 0.00 0.00 5.03
360 361 3.981211 TGCAGAAAATGGACAAAAGCTC 58.019 40.909 0.00 0.00 0.00 4.09
361 362 4.405116 TTGCAGAAAATGGACAAAAGCT 57.595 36.364 0.00 0.00 0.00 3.74
362 363 5.678132 ATTTGCAGAAAATGGACAAAAGC 57.322 34.783 0.00 0.00 37.09 3.51
363 364 9.211485 AGAATATTTGCAGAAAATGGACAAAAG 57.789 29.630 0.00 0.00 38.93 2.27
364 365 9.558396 AAGAATATTTGCAGAAAATGGACAAAA 57.442 25.926 0.00 0.00 38.93 2.44
365 366 9.558396 AAAGAATATTTGCAGAAAATGGACAAA 57.442 25.926 0.00 0.00 38.93 2.83
366 367 9.558396 AAAAGAATATTTGCAGAAAATGGACAA 57.442 25.926 0.00 0.00 38.93 3.18
367 368 9.206870 GAAAAGAATATTTGCAGAAAATGGACA 57.793 29.630 0.00 0.00 38.93 4.02
368 369 9.428097 AGAAAAGAATATTTGCAGAAAATGGAC 57.572 29.630 0.00 0.00 38.93 4.02
387 388 9.423061 CCAAGAAGACAAAAGAAAAAGAAAAGA 57.577 29.630 0.00 0.00 0.00 2.52
388 389 9.423061 TCCAAGAAGACAAAAGAAAAAGAAAAG 57.577 29.630 0.00 0.00 0.00 2.27
389 390 9.942850 ATCCAAGAAGACAAAAGAAAAAGAAAA 57.057 25.926 0.00 0.00 0.00 2.29
390 391 9.586435 GATCCAAGAAGACAAAAGAAAAAGAAA 57.414 29.630 0.00 0.00 0.00 2.52
391 392 8.748412 TGATCCAAGAAGACAAAAGAAAAAGAA 58.252 29.630 0.00 0.00 0.00 2.52
392 393 8.190784 GTGATCCAAGAAGACAAAAGAAAAAGA 58.809 33.333 0.00 0.00 0.00 2.52
393 394 7.975616 TGTGATCCAAGAAGACAAAAGAAAAAG 59.024 33.333 0.00 0.00 0.00 2.27
394 395 7.835822 TGTGATCCAAGAAGACAAAAGAAAAA 58.164 30.769 0.00 0.00 0.00 1.94
395 396 7.403312 TGTGATCCAAGAAGACAAAAGAAAA 57.597 32.000 0.00 0.00 0.00 2.29
396 397 7.403312 TTGTGATCCAAGAAGACAAAAGAAA 57.597 32.000 0.00 0.00 0.00 2.52
397 398 7.587037 ATTGTGATCCAAGAAGACAAAAGAA 57.413 32.000 0.00 0.00 36.25 2.52
398 399 7.587037 AATTGTGATCCAAGAAGACAAAAGA 57.413 32.000 0.00 0.00 36.25 2.52
399 400 8.652810 AAAATTGTGATCCAAGAAGACAAAAG 57.347 30.769 0.00 0.00 36.25 2.27
401 402 9.748708 CTAAAAATTGTGATCCAAGAAGACAAA 57.251 29.630 0.00 0.00 36.25 2.83
402 403 8.912988 ACTAAAAATTGTGATCCAAGAAGACAA 58.087 29.630 0.00 0.00 36.25 3.18
403 404 8.352201 CACTAAAAATTGTGATCCAAGAAGACA 58.648 33.333 0.00 0.00 36.25 3.41
404 405 8.567948 TCACTAAAAATTGTGATCCAAGAAGAC 58.432 33.333 0.00 0.00 38.15 3.01
405 406 8.690203 TCACTAAAAATTGTGATCCAAGAAGA 57.310 30.769 0.00 0.00 38.15 2.87
406 407 8.571336 ACTCACTAAAAATTGTGATCCAAGAAG 58.429 33.333 0.00 0.00 41.56 2.85
407 408 8.352201 CACTCACTAAAAATTGTGATCCAAGAA 58.648 33.333 0.00 0.00 41.56 2.52
408 409 7.719193 TCACTCACTAAAAATTGTGATCCAAGA 59.281 33.333 0.00 0.00 41.56 3.02
409 410 7.874940 TCACTCACTAAAAATTGTGATCCAAG 58.125 34.615 0.00 0.00 41.56 3.61
410 411 7.815840 TCACTCACTAAAAATTGTGATCCAA 57.184 32.000 0.00 0.00 41.56 3.53
411 412 7.522073 GCTTCACTCACTAAAAATTGTGATCCA 60.522 37.037 0.00 0.00 41.56 3.41
412 413 6.803807 GCTTCACTCACTAAAAATTGTGATCC 59.196 38.462 0.00 0.00 41.56 3.36
413 414 6.521133 CGCTTCACTCACTAAAAATTGTGATC 59.479 38.462 0.00 0.00 41.56 2.92
414 415 6.017109 ACGCTTCACTCACTAAAAATTGTGAT 60.017 34.615 0.00 0.00 41.56 3.06
415 416 5.295787 ACGCTTCACTCACTAAAAATTGTGA 59.704 36.000 0.00 0.00 40.39 3.58
416 417 5.510671 ACGCTTCACTCACTAAAAATTGTG 58.489 37.500 0.00 0.00 35.68 3.33
417 418 5.751243 ACGCTTCACTCACTAAAAATTGT 57.249 34.783 0.00 0.00 0.00 2.71
418 419 6.198687 TCAACGCTTCACTCACTAAAAATTG 58.801 36.000 0.00 0.00 0.00 2.32
419 420 6.371809 TCAACGCTTCACTCACTAAAAATT 57.628 33.333 0.00 0.00 0.00 1.82
420 421 6.371809 TTCAACGCTTCACTCACTAAAAAT 57.628 33.333 0.00 0.00 0.00 1.82
421 422 5.804692 TTCAACGCTTCACTCACTAAAAA 57.195 34.783 0.00 0.00 0.00 1.94
422 423 6.371809 AATTCAACGCTTCACTCACTAAAA 57.628 33.333 0.00 0.00 0.00 1.52
423 424 6.371809 AAATTCAACGCTTCACTCACTAAA 57.628 33.333 0.00 0.00 0.00 1.85
424 425 6.260050 AGAAAATTCAACGCTTCACTCACTAA 59.740 34.615 0.00 0.00 0.00 2.24
425 426 5.758296 AGAAAATTCAACGCTTCACTCACTA 59.242 36.000 0.00 0.00 0.00 2.74
426 427 4.576463 AGAAAATTCAACGCTTCACTCACT 59.424 37.500 0.00 0.00 0.00 3.41
427 428 4.672413 CAGAAAATTCAACGCTTCACTCAC 59.328 41.667 0.00 0.00 0.00 3.51
428 429 4.335315 ACAGAAAATTCAACGCTTCACTCA 59.665 37.500 0.00 0.00 0.00 3.41
429 430 4.672413 CACAGAAAATTCAACGCTTCACTC 59.328 41.667 0.00 0.00 0.00 3.51
430 431 4.335315 TCACAGAAAATTCAACGCTTCACT 59.665 37.500 0.00 0.00 0.00 3.41
431 432 4.597079 TCACAGAAAATTCAACGCTTCAC 58.403 39.130 0.00 0.00 0.00 3.18
432 433 4.789481 GCTCACAGAAAATTCAACGCTTCA 60.789 41.667 0.00 0.00 0.00 3.02
433 434 3.665871 GCTCACAGAAAATTCAACGCTTC 59.334 43.478 0.00 0.00 0.00 3.86
434 435 3.316308 AGCTCACAGAAAATTCAACGCTT 59.684 39.130 0.00 0.00 0.00 4.68
435 436 2.880890 AGCTCACAGAAAATTCAACGCT 59.119 40.909 0.00 0.00 0.00 5.07
436 437 3.229552 GAGCTCACAGAAAATTCAACGC 58.770 45.455 9.40 0.00 0.00 4.84
437 438 4.024556 ACTGAGCTCACAGAAAATTCAACG 60.025 41.667 13.74 0.00 40.63 4.10
438 439 5.429957 ACTGAGCTCACAGAAAATTCAAC 57.570 39.130 13.74 0.00 40.63 3.18
439 440 4.516698 GGACTGAGCTCACAGAAAATTCAA 59.483 41.667 13.74 0.00 40.63 2.69
440 441 4.067896 GGACTGAGCTCACAGAAAATTCA 58.932 43.478 13.74 0.00 40.63 2.57
448 449 1.079266 GGCAGGACTGAGCTCACAG 60.079 63.158 13.74 6.89 42.78 3.66
451 452 0.251354 GATTGGCAGGACTGAGCTCA 59.749 55.000 17.19 17.19 0.00 4.26
462 463 3.450578 CAAAATTGGGATCGATTGGCAG 58.549 45.455 0.00 0.00 0.00 4.85
469 470 6.407744 TGGACCATCCAAAATTGGGATCGA 62.408 45.833 12.08 0.00 45.00 3.59
470 471 4.191167 TGGACCATCCAAAATTGGGATCG 61.191 47.826 12.08 3.08 45.00 3.69
488 496 6.528072 GTCGAAATTTCAAATGAGGATTGGAC 59.472 38.462 17.99 8.25 0.00 4.02
499 507 8.130307 CTTGGTTTCAAGTCGAAATTTCAAAT 57.870 30.769 17.99 0.00 45.21 2.32
538 546 1.407258 GGCTGCTAGTGGACTAGAGTG 59.593 57.143 16.50 7.21 46.80 3.51
541 549 1.272480 TGTGGCTGCTAGTGGACTAGA 60.272 52.381 16.50 2.86 46.80 2.43
713 721 3.562609 GGGCCATTGTTTCCCTTGTAGTA 60.563 47.826 4.39 0.00 37.08 1.82
714 722 2.525368 GGCCATTGTTTCCCTTGTAGT 58.475 47.619 0.00 0.00 0.00 2.73
715 723 1.824852 GGGCCATTGTTTCCCTTGTAG 59.175 52.381 4.39 0.00 37.08 2.74
723 731 0.170339 GTGCGTAGGGCCATTGTTTC 59.830 55.000 6.18 0.00 42.61 2.78
851 859 0.110056 GATAAGGCGATTGCATGCGG 60.110 55.000 14.09 3.31 45.35 5.69
853 861 1.198637 GAGGATAAGGCGATTGCATGC 59.801 52.381 11.82 11.82 45.35 4.06
1220 1235 1.869132 CATCCTACATGCACACCGATG 59.131 52.381 0.00 0.00 0.00 3.84
1258 1273 0.250467 GCCTGCCACGATCACCATAT 60.250 55.000 0.00 0.00 0.00 1.78
1259 1274 1.146041 GCCTGCCACGATCACCATA 59.854 57.895 0.00 0.00 0.00 2.74
1262 1277 2.045926 AAGCCTGCCACGATCACC 60.046 61.111 0.00 0.00 0.00 4.02
1452 1467 3.772025 CTCCTCCCAATTACAGAGTCAGT 59.228 47.826 0.00 0.00 0.00 3.41
1518 1542 4.347453 GCCTGCAGCCAAACCACG 62.347 66.667 8.66 0.00 34.35 4.94
1705 1729 9.167311 CTTCATAGTAGCAATGGAGTTTAGTTT 57.833 33.333 0.00 0.00 0.00 2.66
1706 1730 7.281100 GCTTCATAGTAGCAATGGAGTTTAGTT 59.719 37.037 0.00 0.00 38.51 2.24
1707 1731 6.763610 GCTTCATAGTAGCAATGGAGTTTAGT 59.236 38.462 0.00 0.00 38.51 2.24
1708 1732 6.989169 AGCTTCATAGTAGCAATGGAGTTTAG 59.011 38.462 0.00 0.00 41.11 1.85
1709 1733 6.889198 AGCTTCATAGTAGCAATGGAGTTTA 58.111 36.000 0.00 0.00 41.11 2.01
1710 1734 5.749462 AGCTTCATAGTAGCAATGGAGTTT 58.251 37.500 0.00 0.00 41.11 2.66
1711 1735 5.365021 AGCTTCATAGTAGCAATGGAGTT 57.635 39.130 0.00 0.00 41.11 3.01
1712 1736 5.121811 CAAGCTTCATAGTAGCAATGGAGT 58.878 41.667 0.00 0.00 41.11 3.85
1713 1737 4.024218 GCAAGCTTCATAGTAGCAATGGAG 60.024 45.833 0.00 0.00 41.11 3.86
1714 1738 3.879295 GCAAGCTTCATAGTAGCAATGGA 59.121 43.478 0.00 0.00 41.11 3.41
1715 1739 3.628942 TGCAAGCTTCATAGTAGCAATGG 59.371 43.478 0.00 0.00 41.11 3.16
1716 1740 4.595116 GTGCAAGCTTCATAGTAGCAATG 58.405 43.478 6.92 0.00 41.11 2.82
1717 1741 3.310774 CGTGCAAGCTTCATAGTAGCAAT 59.689 43.478 6.92 0.00 41.11 3.56
1718 1742 2.672874 CGTGCAAGCTTCATAGTAGCAA 59.327 45.455 6.92 0.00 41.11 3.91
1719 1743 2.270923 CGTGCAAGCTTCATAGTAGCA 58.729 47.619 0.00 0.00 41.11 3.49
1720 1744 2.271800 ACGTGCAAGCTTCATAGTAGC 58.728 47.619 0.00 0.00 38.93 3.58
1721 1745 3.482472 CGTACGTGCAAGCTTCATAGTAG 59.518 47.826 7.22 0.00 0.00 2.57
1722 1746 3.431856 CGTACGTGCAAGCTTCATAGTA 58.568 45.455 7.22 4.90 0.00 1.82
1725 1749 1.635844 CCGTACGTGCAAGCTTCATA 58.364 50.000 15.21 0.00 0.00 2.15
1726 1750 1.635663 GCCGTACGTGCAAGCTTCAT 61.636 55.000 19.50 0.00 0.00 2.57
1727 1751 2.314647 GCCGTACGTGCAAGCTTCA 61.315 57.895 19.50 0.00 0.00 3.02
1728 1752 1.837538 TTGCCGTACGTGCAAGCTTC 61.838 55.000 28.46 4.85 43.36 3.86
1729 1753 1.890041 TTGCCGTACGTGCAAGCTT 60.890 52.632 28.46 0.00 43.36 3.74
1730 1754 2.280524 TTGCCGTACGTGCAAGCT 60.281 55.556 28.46 0.00 43.36 3.74
1733 1757 1.015109 TTCTTTTGCCGTACGTGCAA 58.985 45.000 28.46 28.46 46.30 4.08
1734 1758 1.015109 TTTCTTTTGCCGTACGTGCA 58.985 45.000 22.10 22.10 36.84 4.57
1735 1759 1.776897 GTTTTCTTTTGCCGTACGTGC 59.223 47.619 15.21 16.94 0.00 5.34
1738 1762 3.595709 TCAGTTTTCTTTTGCCGTACG 57.404 42.857 8.69 8.69 0.00 3.67
1767 1809 0.109412 GTACCCTTCGACACAGGACG 60.109 60.000 3.07 0.00 32.41 4.79
1771 1813 1.214589 CCGGTACCCTTCGACACAG 59.785 63.158 6.25 0.00 0.00 3.66
1772 1814 1.228521 TCCGGTACCCTTCGACACA 60.229 57.895 6.25 0.00 0.00 3.72
1773 1815 1.246737 ACTCCGGTACCCTTCGACAC 61.247 60.000 6.25 0.00 0.00 3.67
1774 1816 1.075482 ACTCCGGTACCCTTCGACA 59.925 57.895 6.25 0.00 0.00 4.35
1775 1817 1.246737 ACACTCCGGTACCCTTCGAC 61.247 60.000 6.25 0.00 0.00 4.20
1776 1818 0.540365 AACACTCCGGTACCCTTCGA 60.540 55.000 6.25 0.00 0.00 3.71
1832 1875 1.377202 GATGACCTTCTTGGCGCCA 60.377 57.895 29.03 29.03 40.22 5.69
1898 1941 1.582968 GTAGTCGCCCTCGTTGACA 59.417 57.895 0.00 0.00 35.09 3.58
1918 1961 1.718757 GATGTTGGCGACCTCATGGC 61.719 60.000 1.61 0.00 36.63 4.40
1925 1968 0.392998 ACCTGATGATGTTGGCGACC 60.393 55.000 1.61 0.00 0.00 4.79
1966 2022 3.264947 TGTATGAGACACTGATTGCAGC 58.735 45.455 0.00 0.00 46.26 5.25
1979 2035 6.661777 TGATCAATTTGGTCCATGTATGAGA 58.338 36.000 7.19 0.00 0.00 3.27
2164 2242 1.065418 GTCATGGTCCCCTTCACGATT 60.065 52.381 0.00 0.00 0.00 3.34
2640 2718 2.589492 CGCCGTCAATGATCTCGCC 61.589 63.158 0.00 0.00 0.00 5.54
2643 2721 3.951979 AATTTCGCCGTCAATGATCTC 57.048 42.857 0.00 0.00 0.00 2.75
2644 2722 4.188462 TGTAATTTCGCCGTCAATGATCT 58.812 39.130 0.00 0.00 0.00 2.75
2651 2734 1.443802 TGCATGTAATTTCGCCGTCA 58.556 45.000 0.00 0.00 0.00 4.35
2883 2966 4.680237 CGACCGGTCAAGCCAGCA 62.680 66.667 32.80 0.00 36.97 4.41
3077 3162 9.987272 CATCTGAATATATGGAGTTCAGTACAA 57.013 33.333 12.42 0.00 45.55 2.41
3090 3175 7.660617 AGAAAGCCTGACACATCTGAATATATG 59.339 37.037 0.00 0.00 0.00 1.78
3103 3189 1.072331 TCCCAAGAGAAAGCCTGACAC 59.928 52.381 0.00 0.00 0.00 3.67
3110 3196 3.214328 TGTGAAAGTCCCAAGAGAAAGC 58.786 45.455 0.00 0.00 0.00 3.51
3130 3216 3.338818 AAACATCGCACAAGAACACTG 57.661 42.857 0.00 0.00 0.00 3.66
3492 3581 6.208644 AGTGCTATTTTAGTGCAAAGTTGTG 58.791 36.000 0.00 0.00 38.50 3.33
3511 3600 6.633500 TCTTTGCATACTACAAAAAGTGCT 57.367 33.333 0.00 0.00 36.63 4.40
3554 3643 3.630312 ACGGTACAGTGTGAAAATTGCTT 59.370 39.130 5.88 0.00 0.00 3.91
3555 3644 3.211045 ACGGTACAGTGTGAAAATTGCT 58.789 40.909 5.88 0.00 0.00 3.91
3566 3655 6.715344 ATGTGTGTAAATTACGGTACAGTG 57.285 37.500 9.06 0.00 31.04 3.66
3567 3656 7.543172 CAGTATGTGTGTAAATTACGGTACAGT 59.457 37.037 3.62 3.62 31.04 3.55
3604 3693 9.107177 TCAATAAACGTGTGGTTACTCTAAAAA 57.893 29.630 0.00 0.00 38.08 1.94
3611 3700 5.992829 TGTGATCAATAAACGTGTGGTTACT 59.007 36.000 0.00 0.00 38.08 2.24
3620 3709 8.267620 TCATCAGATTTGTGATCAATAAACGT 57.732 30.769 0.00 0.00 34.81 3.99
3629 3719 8.453320 TGTGTTGTATTCATCAGATTTGTGATC 58.547 33.333 0.00 0.00 34.81 2.92
3631 3721 7.571059 CGTGTGTTGTATTCATCAGATTTGTGA 60.571 37.037 0.00 0.00 0.00 3.58
3639 3729 4.619760 ACGTACGTGTGTTGTATTCATCAG 59.380 41.667 22.14 0.00 0.00 2.90
3658 3748 1.000060 CCTTCTTGTCGGTTCCACGTA 60.000 52.381 0.00 0.00 34.94 3.57
3660 3750 0.949105 CCCTTCTTGTCGGTTCCACG 60.949 60.000 0.00 0.00 0.00 4.94
3661 3751 0.108019 ACCCTTCTTGTCGGTTCCAC 59.892 55.000 0.00 0.00 0.00 4.02
3669 3759 0.603569 TGCTCTCGACCCTTCTTGTC 59.396 55.000 0.00 0.00 0.00 3.18
3687 3777 1.374560 TTCCTGTGGACACGTGTTTG 58.625 50.000 24.26 10.90 0.00 2.93
3693 3783 0.813610 TGCAGTTTCCTGTGGACACG 60.814 55.000 0.00 0.00 37.46 4.49
3703 3793 3.132111 TGGAAGGTTTTTCTGCAGTTTCC 59.868 43.478 14.67 15.10 34.77 3.13
3704 3794 4.385358 TGGAAGGTTTTTCTGCAGTTTC 57.615 40.909 14.67 7.37 0.00 2.78
3708 3798 4.654091 TTCTTGGAAGGTTTTTCTGCAG 57.346 40.909 7.63 7.63 0.00 4.41
3718 3808 7.508977 TGATGTATTTTCCTTTTCTTGGAAGGT 59.491 33.333 3.11 0.00 43.48 3.50
3730 3820 8.641498 AACAATGACTCTGATGTATTTTCCTT 57.359 30.769 0.00 0.00 0.00 3.36
3742 3832 4.574892 TGCGGAATTAACAATGACTCTGA 58.425 39.130 0.00 0.00 0.00 3.27
3743 3833 4.944962 TGCGGAATTAACAATGACTCTG 57.055 40.909 0.00 0.00 0.00 3.35
3761 3852 2.514013 GGTGACGACGGCTATTGCG 61.514 63.158 0.65 0.00 40.82 4.85
3777 3868 1.816863 ATCCGGCGATATTCAGCGGT 61.817 55.000 9.30 0.00 33.14 5.68
3779 3870 1.136252 CAAATCCGGCGATATTCAGCG 60.136 52.381 9.30 0.00 36.41 5.18
3788 3879 0.611200 TTCTCCTTCAAATCCGGCGA 59.389 50.000 9.30 0.00 0.00 5.54
3789 3880 0.727398 GTTCTCCTTCAAATCCGGCG 59.273 55.000 0.00 0.00 0.00 6.46
3790 3881 1.095600 GGTTCTCCTTCAAATCCGGC 58.904 55.000 0.00 0.00 0.00 6.13
3791 3882 2.489938 TGGTTCTCCTTCAAATCCGG 57.510 50.000 0.00 0.00 34.23 5.14
3792 3883 3.561725 GCTATGGTTCTCCTTCAAATCCG 59.438 47.826 0.00 0.00 34.23 4.18
3793 3884 3.885901 GGCTATGGTTCTCCTTCAAATCC 59.114 47.826 0.00 0.00 34.23 3.01
3794 3885 3.885901 GGGCTATGGTTCTCCTTCAAATC 59.114 47.826 0.00 0.00 34.23 2.17
3795 3886 3.269381 TGGGCTATGGTTCTCCTTCAAAT 59.731 43.478 0.00 0.00 34.23 2.32
3796 3887 2.647299 TGGGCTATGGTTCTCCTTCAAA 59.353 45.455 0.00 0.00 34.23 2.69
3797 3888 2.274542 TGGGCTATGGTTCTCCTTCAA 58.725 47.619 0.00 0.00 34.23 2.69
3798 3889 1.965414 TGGGCTATGGTTCTCCTTCA 58.035 50.000 0.00 0.00 34.23 3.02
3799 3890 2.439507 TCATGGGCTATGGTTCTCCTTC 59.560 50.000 11.16 0.00 37.39 3.46
3800 3891 2.492025 TCATGGGCTATGGTTCTCCTT 58.508 47.619 11.16 0.00 37.39 3.36
3801 3892 2.196742 TCATGGGCTATGGTTCTCCT 57.803 50.000 11.16 0.00 37.39 3.69
3802 3893 2.553904 CCATCATGGGCTATGGTTCTCC 60.554 54.545 11.16 0.00 38.28 3.71
3803 3894 2.787994 CCATCATGGGCTATGGTTCTC 58.212 52.381 11.16 0.00 38.28 2.87
3804 3895 2.965671 CCATCATGGGCTATGGTTCT 57.034 50.000 11.16 0.00 38.28 3.01
3814 3905 0.677731 ACTCACAACGCCATCATGGG 60.678 55.000 5.62 0.00 38.19 4.00
3815 3906 0.729116 GACTCACAACGCCATCATGG 59.271 55.000 0.00 0.00 41.55 3.66
3816 3907 0.371301 CGACTCACAACGCCATCATG 59.629 55.000 0.00 0.00 0.00 3.07
3817 3908 0.246360 TCGACTCACAACGCCATCAT 59.754 50.000 0.00 0.00 0.00 2.45
3818 3909 0.246360 ATCGACTCACAACGCCATCA 59.754 50.000 0.00 0.00 0.00 3.07
3819 3910 0.647410 CATCGACTCACAACGCCATC 59.353 55.000 0.00 0.00 0.00 3.51
3820 3911 0.246360 TCATCGACTCACAACGCCAT 59.754 50.000 0.00 0.00 0.00 4.40
3821 3912 0.032815 TTCATCGACTCACAACGCCA 59.967 50.000 0.00 0.00 0.00 5.69
3822 3913 0.716108 CTTCATCGACTCACAACGCC 59.284 55.000 0.00 0.00 0.00 5.68
3823 3914 1.698165 TCTTCATCGACTCACAACGC 58.302 50.000 0.00 0.00 0.00 4.84
3824 3915 2.091277 GCTTCTTCATCGACTCACAACG 59.909 50.000 0.00 0.00 0.00 4.10
3825 3916 3.321497 AGCTTCTTCATCGACTCACAAC 58.679 45.455 0.00 0.00 0.00 3.32
3826 3917 3.667497 AGCTTCTTCATCGACTCACAA 57.333 42.857 0.00 0.00 0.00 3.33
3827 3918 3.320626 CAAGCTTCTTCATCGACTCACA 58.679 45.455 0.00 0.00 0.00 3.58
3828 3919 2.093467 GCAAGCTTCTTCATCGACTCAC 59.907 50.000 0.00 0.00 0.00 3.51
3829 3920 2.341257 GCAAGCTTCTTCATCGACTCA 58.659 47.619 0.00 0.00 0.00 3.41
3830 3921 1.663135 GGCAAGCTTCTTCATCGACTC 59.337 52.381 0.00 0.00 0.00 3.36
3831 3922 1.002430 TGGCAAGCTTCTTCATCGACT 59.998 47.619 0.00 0.00 0.00 4.18
3832 3923 1.442769 TGGCAAGCTTCTTCATCGAC 58.557 50.000 0.00 0.00 0.00 4.20
3833 3924 2.283298 GATGGCAAGCTTCTTCATCGA 58.717 47.619 13.83 0.00 0.00 3.59
3834 3925 1.004185 CGATGGCAAGCTTCTTCATCG 60.004 52.381 26.54 26.54 46.69 3.84
3835 3926 1.332997 CCGATGGCAAGCTTCTTCATC 59.667 52.381 16.93 16.93 0.00 2.92
3836 3927 1.386533 CCGATGGCAAGCTTCTTCAT 58.613 50.000 0.00 0.30 0.00 2.57
3837 3928 2.858622 CCGATGGCAAGCTTCTTCA 58.141 52.632 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.