Multiple sequence alignment - TraesCS4D01G319000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G319000 chr4D 100.000 4112 0 0 1 4112 483062116 483066227 0.000000e+00 7594
1 TraesCS4D01G319000 chr4D 97.391 115 2 1 2066 2179 483064144 483064258 1.170000e-45 195
2 TraesCS4D01G319000 chr4D 97.391 115 2 1 2029 2143 483064181 483064294 1.170000e-45 195
3 TraesCS4D01G319000 chr4D 85.714 126 18 0 3763 3888 483036641 483036516 2.580000e-27 134
4 TraesCS4D01G319000 chr4D 96.154 78 2 1 2103 2179 483064144 483064221 4.320000e-25 126
5 TraesCS4D01G319000 chr4D 96.154 78 2 1 2029 2106 483064218 483064294 4.320000e-25 126
6 TraesCS4D01G319000 chr4D 82.222 135 24 0 3978 4112 482967616 482967482 2.600000e-22 117
7 TraesCS4D01G319000 chr5A 92.156 1874 106 27 2257 4112 663214554 663216404 0.000000e+00 2608
8 TraesCS4D01G319000 chr5A 84.488 1934 152 72 214 2069 663212506 663214369 0.000000e+00 1773
9 TraesCS4D01G319000 chr4B 86.517 1921 155 54 214 2069 613154569 613156450 0.000000e+00 2017
10 TraesCS4D01G319000 chr4B 95.052 1253 50 9 2862 4112 613157422 613158664 0.000000e+00 1960
11 TraesCS4D01G319000 chr4B 89.888 623 43 12 2257 2863 613156644 613157262 0.000000e+00 784
12 TraesCS4D01G319000 chr4B 84.431 167 26 0 3723 3889 612873213 612873047 9.140000e-37 165
13 TraesCS4D01G319000 chr2A 86.542 535 40 18 792 1299 23479415 23478886 9.980000e-156 560


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G319000 chr4D 483062116 483066227 4111 False 1647.2 7594 97.418000 1 4112 5 chr4D.!!$F1 4111
1 TraesCS4D01G319000 chr5A 663212506 663216404 3898 False 2190.5 2608 88.322000 214 4112 2 chr5A.!!$F1 3898
2 TraesCS4D01G319000 chr4B 613154569 613158664 4095 False 1587.0 2017 90.485667 214 4112 3 chr4B.!!$F1 3898
3 TraesCS4D01G319000 chr2A 23478886 23479415 529 True 560.0 560 86.542000 792 1299 1 chr2A.!!$R1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.242825 CAAGATGCACAAGCCACAGG 59.757 55.0 0.0 0.0 41.13 4.00 F
1303 1365 0.110192 GCTGCTCGGTTTGTTAGCAC 60.110 55.0 0.0 0.0 41.15 4.40 F
1775 1863 0.107508 AAGGTCCCATGACATGCTCG 60.108 55.0 10.1 0.0 43.65 5.03 F
2296 2514 0.253044 TGCATAACTGAGGCCTGACC 59.747 55.0 12.0 0.0 32.41 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1492 1564 0.101759 TCCTATACTTCACGCCGCAC 59.898 55.000 0.0 0.0 0.00 5.34 R
2648 2888 0.666913 CTCGTTCGGTCGTCCCATAT 59.333 55.000 0.0 0.0 0.00 1.78 R
2882 3290 1.065199 GGAAGTCTCATCCATGTGCCA 60.065 52.381 0.0 0.0 36.92 4.92 R
3876 4285 0.179009 ATGGGTTGCAGATGGGATCG 60.179 55.000 0.0 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.565531 GCAAGATGCACAAGCCAC 57.434 55.556 0.00 0.00 44.26 5.01
40 41 1.661480 GCAAGATGCACAAGCCACA 59.339 52.632 0.00 0.00 44.26 4.17
41 42 0.388134 GCAAGATGCACAAGCCACAG 60.388 55.000 0.00 0.00 44.26 3.66
42 43 0.242825 CAAGATGCACAAGCCACAGG 59.757 55.000 0.00 0.00 41.13 4.00
43 44 0.896940 AAGATGCACAAGCCACAGGG 60.897 55.000 0.00 0.00 41.13 4.45
44 45 1.303561 GATGCACAAGCCACAGGGA 60.304 57.895 0.00 0.00 41.13 4.20
45 46 0.682209 GATGCACAAGCCACAGGGAT 60.682 55.000 0.00 0.00 41.13 3.85
46 47 0.968901 ATGCACAAGCCACAGGGATG 60.969 55.000 0.00 0.00 41.13 3.51
47 48 1.303561 GCACAAGCCACAGGGATGA 60.304 57.895 0.00 0.00 35.59 2.92
48 49 0.895100 GCACAAGCCACAGGGATGAA 60.895 55.000 0.00 0.00 35.59 2.57
49 50 1.171308 CACAAGCCACAGGGATGAAG 58.829 55.000 0.00 0.00 35.59 3.02
50 51 1.067295 ACAAGCCACAGGGATGAAGA 58.933 50.000 0.00 0.00 35.59 2.87
51 52 1.637553 ACAAGCCACAGGGATGAAGAT 59.362 47.619 0.00 0.00 35.59 2.40
52 53 2.022195 CAAGCCACAGGGATGAAGATG 58.978 52.381 0.00 0.00 35.59 2.90
53 54 1.293062 AGCCACAGGGATGAAGATGT 58.707 50.000 0.00 0.00 35.59 3.06
54 55 1.211457 AGCCACAGGGATGAAGATGTC 59.789 52.381 0.00 0.00 35.59 3.06
55 56 1.211457 GCCACAGGGATGAAGATGTCT 59.789 52.381 0.00 0.00 35.59 3.41
56 57 2.744494 GCCACAGGGATGAAGATGTCTC 60.744 54.545 0.00 0.00 35.59 3.36
57 58 2.482664 CCACAGGGATGAAGATGTCTCG 60.483 54.545 0.00 0.00 35.59 4.04
58 59 2.428530 CACAGGGATGAAGATGTCTCGA 59.571 50.000 0.00 0.00 0.00 4.04
59 60 3.069300 CACAGGGATGAAGATGTCTCGAT 59.931 47.826 0.00 0.00 0.00 3.59
60 61 3.708631 ACAGGGATGAAGATGTCTCGATT 59.291 43.478 0.00 0.00 0.00 3.34
61 62 4.895889 ACAGGGATGAAGATGTCTCGATTA 59.104 41.667 0.00 0.00 0.00 1.75
62 63 5.541868 ACAGGGATGAAGATGTCTCGATTAT 59.458 40.000 0.00 0.00 0.00 1.28
63 64 5.868258 CAGGGATGAAGATGTCTCGATTATG 59.132 44.000 0.00 0.00 0.00 1.90
64 65 5.541868 AGGGATGAAGATGTCTCGATTATGT 59.458 40.000 0.00 0.00 0.00 2.29
65 66 6.042552 AGGGATGAAGATGTCTCGATTATGTT 59.957 38.462 0.00 0.00 0.00 2.71
66 67 6.146837 GGGATGAAGATGTCTCGATTATGTTG 59.853 42.308 0.00 0.00 0.00 3.33
67 68 6.146837 GGATGAAGATGTCTCGATTATGTTGG 59.853 42.308 0.00 0.00 0.00 3.77
68 69 5.977635 TGAAGATGTCTCGATTATGTTGGT 58.022 37.500 0.00 0.00 0.00 3.67
69 70 6.406370 TGAAGATGTCTCGATTATGTTGGTT 58.594 36.000 0.00 0.00 0.00 3.67
70 71 7.552459 TGAAGATGTCTCGATTATGTTGGTTA 58.448 34.615 0.00 0.00 0.00 2.85
71 72 7.706607 TGAAGATGTCTCGATTATGTTGGTTAG 59.293 37.037 0.00 0.00 0.00 2.34
72 73 7.348080 AGATGTCTCGATTATGTTGGTTAGA 57.652 36.000 0.00 0.00 0.00 2.10
73 74 7.957002 AGATGTCTCGATTATGTTGGTTAGAT 58.043 34.615 0.00 0.00 0.00 1.98
74 75 8.424918 AGATGTCTCGATTATGTTGGTTAGATT 58.575 33.333 0.00 0.00 0.00 2.40
75 76 8.964476 ATGTCTCGATTATGTTGGTTAGATTT 57.036 30.769 0.00 0.00 0.00 2.17
76 77 8.196802 TGTCTCGATTATGTTGGTTAGATTTG 57.803 34.615 0.00 0.00 0.00 2.32
77 78 7.279981 TGTCTCGATTATGTTGGTTAGATTTGG 59.720 37.037 0.00 0.00 0.00 3.28
78 79 6.765989 TCTCGATTATGTTGGTTAGATTTGGG 59.234 38.462 0.00 0.00 0.00 4.12
79 80 5.825679 TCGATTATGTTGGTTAGATTTGGGG 59.174 40.000 0.00 0.00 0.00 4.96
80 81 5.825679 CGATTATGTTGGTTAGATTTGGGGA 59.174 40.000 0.00 0.00 0.00 4.81
81 82 6.320164 CGATTATGTTGGTTAGATTTGGGGAA 59.680 38.462 0.00 0.00 0.00 3.97
82 83 6.844097 TTATGTTGGTTAGATTTGGGGAAC 57.156 37.500 0.00 0.00 0.00 3.62
83 84 4.463050 TGTTGGTTAGATTTGGGGAACT 57.537 40.909 0.00 0.00 0.00 3.01
84 85 4.148838 TGTTGGTTAGATTTGGGGAACTG 58.851 43.478 0.00 0.00 0.00 3.16
85 86 3.449746 TGGTTAGATTTGGGGAACTGG 57.550 47.619 0.00 0.00 0.00 4.00
86 87 2.719705 TGGTTAGATTTGGGGAACTGGT 59.280 45.455 0.00 0.00 0.00 4.00
87 88 3.089284 GGTTAGATTTGGGGAACTGGTG 58.911 50.000 0.00 0.00 0.00 4.17
88 89 3.245122 GGTTAGATTTGGGGAACTGGTGA 60.245 47.826 0.00 0.00 0.00 4.02
89 90 2.586648 AGATTTGGGGAACTGGTGAC 57.413 50.000 0.00 0.00 0.00 3.67
90 91 1.075536 AGATTTGGGGAACTGGTGACC 59.924 52.381 0.00 0.00 0.00 4.02
91 92 0.856982 ATTTGGGGAACTGGTGACCA 59.143 50.000 3.40 3.40 0.00 4.02
100 101 3.902515 CTGGTGACCAGTGAGACAG 57.097 57.895 23.27 0.00 45.82 3.51
101 102 1.043816 CTGGTGACCAGTGAGACAGT 58.956 55.000 23.27 0.00 45.82 3.55
102 103 0.752658 TGGTGACCAGTGAGACAGTG 59.247 55.000 0.00 0.00 34.85 3.66
103 104 1.040646 GGTGACCAGTGAGACAGTGA 58.959 55.000 0.00 0.00 36.99 3.41
104 105 1.269831 GGTGACCAGTGAGACAGTGAC 60.270 57.143 0.00 0.00 36.99 3.67
105 106 1.683917 GTGACCAGTGAGACAGTGACT 59.316 52.381 0.00 0.00 36.99 3.41
106 107 1.683385 TGACCAGTGAGACAGTGACTG 59.317 52.381 11.70 11.70 36.99 3.51
107 108 0.390860 ACCAGTGAGACAGTGACTGC 59.609 55.000 13.37 5.71 36.99 4.40
108 109 0.390492 CCAGTGAGACAGTGACTGCA 59.610 55.000 13.37 0.00 36.99 4.41
109 110 1.001746 CCAGTGAGACAGTGACTGCAT 59.998 52.381 13.37 0.46 36.99 3.96
110 111 2.549563 CCAGTGAGACAGTGACTGCATT 60.550 50.000 13.37 0.00 36.99 3.56
111 112 2.735663 CAGTGAGACAGTGACTGCATTC 59.264 50.000 13.37 8.42 36.99 2.67
112 113 2.632028 AGTGAGACAGTGACTGCATTCT 59.368 45.455 13.37 8.24 34.37 2.40
113 114 2.992543 GTGAGACAGTGACTGCATTCTC 59.007 50.000 19.15 19.15 34.37 2.87
114 115 2.629617 TGAGACAGTGACTGCATTCTCA 59.370 45.455 22.73 22.73 36.10 3.27
115 116 3.260128 TGAGACAGTGACTGCATTCTCAT 59.740 43.478 22.73 0.00 34.77 2.90
116 117 3.597255 AGACAGTGACTGCATTCTCATG 58.403 45.455 13.37 4.32 34.37 3.07
117 118 3.260128 AGACAGTGACTGCATTCTCATGA 59.740 43.478 13.37 0.00 34.37 3.07
118 119 3.999001 GACAGTGACTGCATTCTCATGAA 59.001 43.478 13.37 0.00 34.37 2.57
119 120 4.392047 ACAGTGACTGCATTCTCATGAAA 58.608 39.130 13.37 0.00 33.57 2.69
120 121 5.008331 ACAGTGACTGCATTCTCATGAAAT 58.992 37.500 13.37 0.00 33.57 2.17
121 122 5.106277 ACAGTGACTGCATTCTCATGAAATG 60.106 40.000 13.37 18.51 39.55 2.32
122 123 4.103357 GTGACTGCATTCTCATGAAATGC 58.897 43.478 29.20 29.20 46.21 3.56
123 124 3.129813 TGACTGCATTCTCATGAAATGCC 59.870 43.478 30.80 22.95 46.21 4.40
124 125 3.093814 ACTGCATTCTCATGAAATGCCA 58.906 40.909 30.80 23.37 46.21 4.92
125 126 3.512329 ACTGCATTCTCATGAAATGCCAA 59.488 39.130 30.80 21.39 46.21 4.52
126 127 4.161565 ACTGCATTCTCATGAAATGCCAAT 59.838 37.500 30.80 21.60 46.21 3.16
127 128 5.092554 TGCATTCTCATGAAATGCCAATT 57.907 34.783 30.80 3.86 46.21 2.32
128 129 4.873259 TGCATTCTCATGAAATGCCAATTG 59.127 37.500 30.80 0.00 46.21 2.32
129 130 4.260620 GCATTCTCATGAAATGCCAATTGC 60.261 41.667 27.49 14.19 46.21 3.56
130 131 4.873259 CATTCTCATGAAATGCCAATTGCA 59.127 37.500 13.83 2.37 46.21 4.08
141 142 1.386412 GCCAATTGCATGAAAACGTCG 59.614 47.619 0.00 0.00 40.77 5.12
142 143 1.386412 CCAATTGCATGAAAACGTCGC 59.614 47.619 0.00 0.00 0.00 5.19
143 144 2.049959 CAATTGCATGAAAACGTCGCA 58.950 42.857 0.00 0.00 0.00 5.10
144 145 1.967762 ATTGCATGAAAACGTCGCAG 58.032 45.000 0.00 0.00 33.48 5.18
145 146 0.660005 TTGCATGAAAACGTCGCAGC 60.660 50.000 0.00 0.00 33.48 5.25
146 147 1.082169 GCATGAAAACGTCGCAGCA 60.082 52.632 0.00 0.00 0.00 4.41
147 148 0.454957 GCATGAAAACGTCGCAGCAT 60.455 50.000 0.00 0.00 0.00 3.79
148 149 1.253116 CATGAAAACGTCGCAGCATG 58.747 50.000 0.00 0.00 40.87 4.06
149 150 0.874390 ATGAAAACGTCGCAGCATGT 59.126 45.000 0.00 0.00 39.31 3.21
150 151 0.660488 TGAAAACGTCGCAGCATGTT 59.340 45.000 0.00 0.00 39.31 2.71
151 152 1.867865 TGAAAACGTCGCAGCATGTTA 59.132 42.857 0.00 0.00 39.31 2.41
152 153 2.288186 TGAAAACGTCGCAGCATGTTAA 59.712 40.909 0.00 0.00 39.31 2.01
153 154 3.058570 TGAAAACGTCGCAGCATGTTAAT 60.059 39.130 0.00 0.00 39.31 1.40
154 155 2.806288 AACGTCGCAGCATGTTAATC 57.194 45.000 0.00 0.00 39.31 1.75
155 156 1.720805 ACGTCGCAGCATGTTAATCA 58.279 45.000 0.00 0.00 39.31 2.57
156 157 1.660607 ACGTCGCAGCATGTTAATCAG 59.339 47.619 0.00 0.00 39.31 2.90
157 158 1.660607 CGTCGCAGCATGTTAATCAGT 59.339 47.619 0.00 0.00 39.31 3.41
158 159 2.285256 CGTCGCAGCATGTTAATCAGTC 60.285 50.000 0.00 0.00 39.31 3.51
159 160 2.030946 GTCGCAGCATGTTAATCAGTCC 59.969 50.000 0.00 0.00 39.31 3.85
160 161 2.009051 CGCAGCATGTTAATCAGTCCA 58.991 47.619 0.00 0.00 39.31 4.02
161 162 2.419673 CGCAGCATGTTAATCAGTCCAA 59.580 45.455 0.00 0.00 39.31 3.53
162 163 3.728864 CGCAGCATGTTAATCAGTCCAAC 60.729 47.826 0.00 0.00 39.31 3.77
163 164 3.728864 GCAGCATGTTAATCAGTCCAACG 60.729 47.826 0.00 0.00 39.31 4.10
164 165 3.436704 CAGCATGTTAATCAGTCCAACGT 59.563 43.478 0.00 0.00 0.00 3.99
165 166 3.436704 AGCATGTTAATCAGTCCAACGTG 59.563 43.478 0.00 0.00 40.52 4.49
166 167 3.435327 GCATGTTAATCAGTCCAACGTGA 59.565 43.478 9.44 0.00 40.16 4.35
167 168 4.669197 GCATGTTAATCAGTCCAACGTGAC 60.669 45.833 9.44 0.00 40.16 3.67
168 169 4.061357 TGTTAATCAGTCCAACGTGACA 57.939 40.909 8.55 0.00 37.73 3.58
169 170 4.443621 TGTTAATCAGTCCAACGTGACAA 58.556 39.130 8.55 0.00 37.73 3.18
170 171 4.509970 TGTTAATCAGTCCAACGTGACAAG 59.490 41.667 8.55 1.53 37.73 3.16
171 172 2.910688 ATCAGTCCAACGTGACAAGT 57.089 45.000 8.55 0.00 37.73 3.16
172 173 2.684001 TCAGTCCAACGTGACAAGTT 57.316 45.000 8.55 0.51 37.73 2.66
173 174 3.804786 TCAGTCCAACGTGACAAGTTA 57.195 42.857 6.44 0.00 37.73 2.24
174 175 3.450578 TCAGTCCAACGTGACAAGTTAC 58.549 45.455 6.44 3.12 37.73 2.50
175 176 3.119065 TCAGTCCAACGTGACAAGTTACA 60.119 43.478 6.44 0.00 37.73 2.41
176 177 3.807622 CAGTCCAACGTGACAAGTTACAT 59.192 43.478 6.44 0.00 37.73 2.29
177 178 4.986034 CAGTCCAACGTGACAAGTTACATA 59.014 41.667 6.44 0.00 37.73 2.29
178 179 5.464057 CAGTCCAACGTGACAAGTTACATAA 59.536 40.000 6.44 0.00 37.73 1.90
179 180 5.694910 AGTCCAACGTGACAAGTTACATAAG 59.305 40.000 6.44 0.00 37.73 1.73
180 181 5.464389 GTCCAACGTGACAAGTTACATAAGT 59.536 40.000 6.44 0.00 35.29 2.24
181 182 6.018507 GTCCAACGTGACAAGTTACATAAGTT 60.019 38.462 6.44 0.00 35.29 2.66
182 183 7.169645 GTCCAACGTGACAAGTTACATAAGTTA 59.830 37.037 6.44 0.00 35.29 2.24
183 184 7.169645 TCCAACGTGACAAGTTACATAAGTTAC 59.830 37.037 6.44 0.00 0.00 2.50
184 185 6.680055 ACGTGACAAGTTACATAAGTTACG 57.320 37.500 0.00 0.00 35.69 3.18
185 186 5.117592 ACGTGACAAGTTACATAAGTTACGC 59.882 40.000 7.86 6.22 34.20 4.42
186 187 5.117440 CGTGACAAGTTACATAAGTTACGCA 59.883 40.000 0.00 0.00 32.77 5.24
187 188 6.183360 CGTGACAAGTTACATAAGTTACGCAT 60.183 38.462 0.00 0.00 32.77 4.73
188 189 7.515643 GTGACAAGTTACATAAGTTACGCATT 58.484 34.615 0.00 0.00 32.77 3.56
189 190 7.686938 GTGACAAGTTACATAAGTTACGCATTC 59.313 37.037 0.00 0.00 32.77 2.67
190 191 6.758149 ACAAGTTACATAAGTTACGCATTCG 58.242 36.000 0.00 0.00 42.43 3.34
191 192 6.587226 ACAAGTTACATAAGTTACGCATTCGA 59.413 34.615 0.00 0.00 39.41 3.71
192 193 7.116662 ACAAGTTACATAAGTTACGCATTCGAA 59.883 33.333 0.00 0.00 39.41 3.71
193 194 7.585286 AGTTACATAAGTTACGCATTCGAAA 57.415 32.000 0.00 0.00 39.41 3.46
194 195 8.193250 AGTTACATAAGTTACGCATTCGAAAT 57.807 30.769 0.00 0.00 39.41 2.17
195 196 8.325997 AGTTACATAAGTTACGCATTCGAAATC 58.674 33.333 0.00 0.00 39.41 2.17
196 197 6.656314 ACATAAGTTACGCATTCGAAATCA 57.344 33.333 0.00 0.00 39.41 2.57
197 198 7.246674 ACATAAGTTACGCATTCGAAATCAT 57.753 32.000 0.00 0.00 39.41 2.45
198 199 7.345192 ACATAAGTTACGCATTCGAAATCATC 58.655 34.615 0.00 0.00 39.41 2.92
199 200 5.794687 AAGTTACGCATTCGAAATCATCA 57.205 34.783 0.00 0.00 39.41 3.07
200 201 5.143916 AGTTACGCATTCGAAATCATCAC 57.856 39.130 0.00 0.00 39.41 3.06
201 202 2.719325 ACGCATTCGAAATCATCACG 57.281 45.000 0.00 1.27 39.41 4.35
202 203 1.327460 ACGCATTCGAAATCATCACGG 59.673 47.619 0.00 0.00 39.41 4.94
203 204 1.746760 GCATTCGAAATCATCACGGC 58.253 50.000 0.00 0.00 0.00 5.68
204 205 1.331756 GCATTCGAAATCATCACGGCT 59.668 47.619 0.00 0.00 0.00 5.52
205 206 2.543848 GCATTCGAAATCATCACGGCTA 59.456 45.455 0.00 0.00 0.00 3.93
206 207 3.363378 GCATTCGAAATCATCACGGCTAG 60.363 47.826 0.00 0.00 0.00 3.42
207 208 2.509052 TCGAAATCATCACGGCTAGG 57.491 50.000 0.00 0.00 0.00 3.02
208 209 1.068588 TCGAAATCATCACGGCTAGGG 59.931 52.381 0.00 0.00 0.00 3.53
209 210 1.202533 CGAAATCATCACGGCTAGGGT 60.203 52.381 0.00 0.00 0.00 4.34
210 211 2.035449 CGAAATCATCACGGCTAGGGTA 59.965 50.000 0.00 0.00 0.00 3.69
211 212 3.391049 GAAATCATCACGGCTAGGGTAC 58.609 50.000 0.00 0.00 0.00 3.34
237 238 2.553268 GTCGCAACAGTGAGCTGC 59.447 61.111 0.00 1.72 46.30 5.25
242 243 1.572085 GCAACAGTGAGCTGCGTGAT 61.572 55.000 0.00 0.00 46.30 3.06
249 250 4.216257 ACAGTGAGCTGCGTGATTAAATTT 59.784 37.500 0.00 0.00 46.30 1.82
251 252 5.961843 CAGTGAGCTGCGTGATTAAATTTAG 59.038 40.000 0.00 0.00 35.77 1.85
260 261 6.601613 TGCGTGATTAAATTTAGATTCCCACT 59.398 34.615 0.00 0.00 0.00 4.00
268 269 2.550277 TAGATTCCCACTGCAGGAGA 57.450 50.000 19.93 8.61 34.08 3.71
282 283 1.669115 GGAGAAGAGCGCAACAGCA 60.669 57.895 11.47 0.00 40.15 4.41
377 378 1.611491 GAGACCATCAGATCCGAGACC 59.389 57.143 0.00 0.00 0.00 3.85
420 435 4.348495 GGGAGTGGGGAGTGGGGA 62.348 72.222 0.00 0.00 0.00 4.81
421 436 2.689034 GGAGTGGGGAGTGGGGAG 60.689 72.222 0.00 0.00 0.00 4.30
422 437 2.689034 GAGTGGGGAGTGGGGAGG 60.689 72.222 0.00 0.00 0.00 4.30
653 679 2.266055 GTGCCCGTGGGAGAAGAG 59.734 66.667 9.72 0.00 37.50 2.85
660 686 1.203523 CCGTGGGAGAAGAGAAGAGTG 59.796 57.143 0.00 0.00 0.00 3.51
677 707 2.733593 GTGACGTGTGGCCGAGAC 60.734 66.667 0.00 0.00 0.00 3.36
750 780 3.948719 GGCTCCACCGGTTCACCA 61.949 66.667 2.97 0.00 35.14 4.17
770 803 2.043852 TCTCCCCCTCTCTCGCAC 60.044 66.667 0.00 0.00 0.00 5.34
775 808 3.842923 CCCTCTCTCGCACCGCAT 61.843 66.667 0.00 0.00 0.00 4.73
776 809 2.279120 CCTCTCTCGCACCGCATC 60.279 66.667 0.00 0.00 0.00 3.91
777 810 2.653448 CTCTCTCGCACCGCATCG 60.653 66.667 0.00 0.00 0.00 3.84
778 811 4.854784 TCTCTCGCACCGCATCGC 62.855 66.667 0.00 0.00 0.00 4.58
914 972 2.790791 CGGCCTCATCGCTTCTCCT 61.791 63.158 0.00 0.00 0.00 3.69
1156 1217 1.614241 CCTCGTGGTACCCTCCCTTG 61.614 65.000 10.07 0.00 0.00 3.61
1163 1224 1.003051 TACCCTCCCTTGCCCTCTC 59.997 63.158 0.00 0.00 0.00 3.20
1181 1242 3.760035 CTCACCCCGTCACCTCCG 61.760 72.222 0.00 0.00 0.00 4.63
1191 1252 4.619227 CACCTCCGCCCACGTGTT 62.619 66.667 15.65 0.00 37.70 3.32
1261 1323 1.195448 CTTGTCATCGTGGTGTTCAGC 59.805 52.381 0.00 0.00 0.00 4.26
1299 1361 2.994990 AACGCTGCTCGGTTTGTTA 58.005 47.368 0.00 0.00 43.86 2.41
1303 1365 0.110192 GCTGCTCGGTTTGTTAGCAC 60.110 55.000 0.00 0.00 41.15 4.40
1322 1384 1.489230 ACCAACTGTTTCTTCCCGTCT 59.511 47.619 0.00 0.00 0.00 4.18
1325 1387 0.317479 ACTGTTTCTTCCCGTCTCCG 59.683 55.000 0.00 0.00 0.00 4.63
1332 1394 0.604578 CTTCCCGTCTCCGTACCAAA 59.395 55.000 0.00 0.00 0.00 3.28
1333 1395 0.318120 TTCCCGTCTCCGTACCAAAC 59.682 55.000 0.00 0.00 0.00 2.93
1335 1397 0.248289 CCCGTCTCCGTACCAAACAT 59.752 55.000 0.00 0.00 0.00 2.71
1336 1398 1.338389 CCCGTCTCCGTACCAAACATT 60.338 52.381 0.00 0.00 0.00 2.71
1337 1399 1.730064 CCGTCTCCGTACCAAACATTG 59.270 52.381 0.00 0.00 0.00 2.82
1338 1400 2.409975 CGTCTCCGTACCAAACATTGT 58.590 47.619 0.00 0.00 0.00 2.71
1339 1401 3.577667 CGTCTCCGTACCAAACATTGTA 58.422 45.455 0.00 0.00 0.00 2.41
1340 1402 3.365820 CGTCTCCGTACCAAACATTGTAC 59.634 47.826 0.00 0.00 0.00 2.90
1341 1403 4.309099 GTCTCCGTACCAAACATTGTACA 58.691 43.478 0.00 0.00 0.00 2.90
1342 1404 4.387862 GTCTCCGTACCAAACATTGTACAG 59.612 45.833 0.00 0.00 0.00 2.74
1343 1405 4.039488 TCTCCGTACCAAACATTGTACAGT 59.961 41.667 0.00 0.00 0.00 3.55
1344 1406 4.059511 TCCGTACCAAACATTGTACAGTG 58.940 43.478 16.11 16.11 0.00 3.66
1345 1407 3.810941 CCGTACCAAACATTGTACAGTGT 59.189 43.478 17.46 17.46 32.36 3.55
1346 1408 4.273969 CCGTACCAAACATTGTACAGTGTT 59.726 41.667 25.89 25.89 41.99 3.32
1348 1410 6.259638 CGTACCAAACATTGTACAGTGTTTT 58.740 36.000 34.01 26.22 45.05 2.43
1349 1411 6.195613 CGTACCAAACATTGTACAGTGTTTTG 59.804 38.462 34.01 31.93 45.05 2.44
1367 1436 6.019881 GTGTTTTGTTTGTTCAGTGATAAGGC 60.020 38.462 0.00 0.00 0.00 4.35
1379 1448 3.689649 AGTGATAAGGCGATTGTGTTTCC 59.310 43.478 0.00 0.00 0.00 3.13
1498 1570 2.659610 AGGAGACTTCTGTGCGGC 59.340 61.111 0.00 0.00 37.44 6.53
1505 1577 1.956170 CTTCTGTGCGGCGTGAAGT 60.956 57.895 9.37 0.00 33.37 3.01
1518 1602 4.082949 CGGCGTGAAGTATAGGATATCACA 60.083 45.833 4.83 0.00 40.22 3.58
1532 1616 5.768164 AGGATATCACACGTTGAAAAACCTT 59.232 36.000 4.83 0.00 37.92 3.50
1533 1617 5.856455 GGATATCACACGTTGAAAAACCTTG 59.144 40.000 4.83 0.00 37.92 3.61
1548 1632 2.641305 ACCTTGATGCTGAATCTGAGC 58.359 47.619 0.00 0.00 36.15 4.26
1556 1640 1.878734 GCTGAATCTGAGCCATTAGCC 59.121 52.381 0.00 0.00 45.47 3.93
1558 1642 3.548770 CTGAATCTGAGCCATTAGCCAA 58.451 45.455 0.00 0.00 45.47 4.52
1617 1701 4.917385 TGAAGTAAATAAGAGGCCAAGCA 58.083 39.130 5.01 0.00 0.00 3.91
1640 1727 2.092592 AGTTATTTTAGGACCTGCCCGG 60.093 50.000 3.53 0.00 37.37 5.73
1654 1741 1.210155 CCCGGCTTTCTGCTTTTCG 59.790 57.895 0.00 0.00 42.39 3.46
1655 1742 1.515521 CCCGGCTTTCTGCTTTTCGT 61.516 55.000 0.00 0.00 42.39 3.85
1656 1743 0.310854 CCGGCTTTCTGCTTTTCGTT 59.689 50.000 0.00 0.00 42.39 3.85
1657 1744 1.269051 CCGGCTTTCTGCTTTTCGTTT 60.269 47.619 0.00 0.00 42.39 3.60
1759 1846 2.420022 CGCCTGTTGGAATCAAGTAAGG 59.580 50.000 0.00 0.00 34.64 2.69
1770 1858 5.440610 GAATCAAGTAAGGTCCCATGACAT 58.559 41.667 0.00 0.00 43.65 3.06
1772 1860 2.684881 CAAGTAAGGTCCCATGACATGC 59.315 50.000 10.10 0.00 43.65 4.06
1775 1863 0.107508 AAGGTCCCATGACATGCTCG 60.108 55.000 10.10 0.00 43.65 5.03
1777 1865 0.464036 GGTCCCATGACATGCTCGTA 59.536 55.000 10.10 0.00 43.65 3.43
1782 1870 3.831911 TCCCATGACATGCTCGTATATGA 59.168 43.478 10.10 0.00 0.00 2.15
1785 1873 5.292834 CCCATGACATGCTCGTATATGATTC 59.707 44.000 10.10 0.00 0.00 2.52
1789 1877 9.310716 CATGACATGCTCGTATATGATTCTTAT 57.689 33.333 1.71 0.00 0.00 1.73
1792 1880 9.358872 GACATGCTCGTATATGATTCTTATTCA 57.641 33.333 0.00 0.00 0.00 2.57
1793 1881 9.363763 ACATGCTCGTATATGATTCTTATTCAG 57.636 33.333 0.00 0.00 0.00 3.02
1794 1882 8.815189 CATGCTCGTATATGATTCTTATTCAGG 58.185 37.037 0.00 0.00 0.00 3.86
1795 1883 8.122472 TGCTCGTATATGATTCTTATTCAGGA 57.878 34.615 0.00 0.00 0.00 3.86
1796 1884 8.585018 TGCTCGTATATGATTCTTATTCAGGAA 58.415 33.333 0.00 0.00 0.00 3.36
1797 1885 9.593134 GCTCGTATATGATTCTTATTCAGGAAT 57.407 33.333 0.00 0.00 35.23 3.01
1809 1908 7.278135 TCTTATTCAGGAATTCAGGAGTCATG 58.722 38.462 7.93 0.00 32.50 3.07
1813 1912 7.418368 TATTCAGGAATTCAGGAGTCATGACTC 60.418 40.741 37.36 37.36 42.69 3.36
1828 1927 8.281212 AGTCATGACTCAAATAACCATTTACC 57.719 34.615 22.89 0.00 36.92 2.85
1834 1933 8.865090 TGACTCAAATAACCATTTACCATGTTT 58.135 29.630 0.00 0.00 32.96 2.83
1872 1973 6.607970 TCTTTATAATACCTCTCTGACGGGA 58.392 40.000 0.00 0.00 0.00 5.14
1877 1978 1.144936 CCTCTCTGACGGGATTGCC 59.855 63.158 0.00 0.00 0.00 4.52
1894 1995 5.279156 GGATTGCCCAAGGATATGTCAATTC 60.279 44.000 0.00 0.00 34.14 2.17
1944 2045 6.053005 TGTCTTGTCCTTCGTCAAAAACTAT 58.947 36.000 0.00 0.00 0.00 2.12
1951 2052 5.998981 TCCTTCGTCAAAAACTATTGCCTTA 59.001 36.000 0.00 0.00 0.00 2.69
1957 2058 6.961554 CGTCAAAAACTATTGCCTTATCTGAC 59.038 38.462 0.00 0.00 0.00 3.51
1963 2064 6.019779 ACTATTGCCTTATCTGACGAGATC 57.980 41.667 0.00 0.00 39.76 2.75
1970 2071 5.679894 GCCTTATCTGACGAGATCTTCACAA 60.680 44.000 0.00 0.00 39.76 3.33
1971 2072 5.746245 CCTTATCTGACGAGATCTTCACAAC 59.254 44.000 0.00 0.00 39.76 3.32
1994 2095 4.644103 TTAGGTACTGGATAGCGACAAC 57.356 45.455 0.00 0.00 41.52 3.32
2025 2126 4.935205 TCATGTCTTATTTCCCTGTTCACG 59.065 41.667 0.00 0.00 0.00 4.35
2049 2150 2.875296 AGTGGCATTTCCTGTGCTTTA 58.125 42.857 0.00 0.00 42.16 1.85
2050 2151 2.558359 AGTGGCATTTCCTGTGCTTTAC 59.442 45.455 0.00 0.00 42.16 2.01
2051 2152 2.558359 GTGGCATTTCCTGTGCTTTACT 59.442 45.455 0.00 0.00 42.16 2.24
2054 2155 4.100808 TGGCATTTCCTGTGCTTTACTTTT 59.899 37.500 0.00 0.00 42.16 2.27
2055 2156 4.686091 GGCATTTCCTGTGCTTTACTTTTC 59.314 41.667 0.00 0.00 42.16 2.29
2056 2157 5.509670 GGCATTTCCTGTGCTTTACTTTTCT 60.510 40.000 0.00 0.00 42.16 2.52
2057 2158 5.985530 GCATTTCCTGTGCTTTACTTTTCTT 59.014 36.000 0.00 0.00 39.45 2.52
2058 2159 6.074142 GCATTTCCTGTGCTTTACTTTTCTTG 60.074 38.462 0.00 0.00 39.45 3.02
2059 2160 6.767524 TTTCCTGTGCTTTACTTTTCTTGA 57.232 33.333 0.00 0.00 0.00 3.02
2060 2161 5.751243 TCCTGTGCTTTACTTTTCTTGAC 57.249 39.130 0.00 0.00 0.00 3.18
2061 2162 5.437060 TCCTGTGCTTTACTTTTCTTGACT 58.563 37.500 0.00 0.00 0.00 3.41
2062 2163 5.296780 TCCTGTGCTTTACTTTTCTTGACTG 59.703 40.000 0.00 0.00 0.00 3.51
2063 2164 5.296780 CCTGTGCTTTACTTTTCTTGACTGA 59.703 40.000 0.00 0.00 0.00 3.41
2064 2165 6.363577 TGTGCTTTACTTTTCTTGACTGAG 57.636 37.500 0.00 0.00 0.00 3.35
2065 2166 6.112734 TGTGCTTTACTTTTCTTGACTGAGA 58.887 36.000 0.00 0.00 0.00 3.27
2066 2167 6.597672 TGTGCTTTACTTTTCTTGACTGAGAA 59.402 34.615 0.00 0.00 34.00 2.87
2067 2168 6.907748 GTGCTTTACTTTTCTTGACTGAGAAC 59.092 38.462 0.00 0.00 35.50 3.01
2068 2169 6.823689 TGCTTTACTTTTCTTGACTGAGAACT 59.176 34.615 0.00 0.00 35.50 3.01
2069 2170 7.128976 GCTTTACTTTTCTTGACTGAGAACTG 58.871 38.462 0.00 0.00 35.50 3.16
2070 2171 7.553881 TTTACTTTTCTTGACTGAGAACTGG 57.446 36.000 0.00 0.00 35.50 4.00
2071 2172 3.879892 ACTTTTCTTGACTGAGAACTGGC 59.120 43.478 0.00 0.00 35.50 4.85
2072 2173 3.558931 TTTCTTGACTGAGAACTGGCA 57.441 42.857 0.00 0.00 35.50 4.92
2073 2174 3.777106 TTCTTGACTGAGAACTGGCAT 57.223 42.857 0.00 0.00 33.22 4.40
2074 2175 3.777106 TCTTGACTGAGAACTGGCATT 57.223 42.857 0.00 0.00 33.22 3.56
2075 2176 4.090761 TCTTGACTGAGAACTGGCATTT 57.909 40.909 0.00 0.00 33.22 2.32
2076 2177 4.067896 TCTTGACTGAGAACTGGCATTTC 58.932 43.478 9.36 9.36 33.22 2.17
2077 2178 2.783135 TGACTGAGAACTGGCATTTCC 58.217 47.619 13.27 6.55 0.00 3.13
2078 2179 2.373169 TGACTGAGAACTGGCATTTCCT 59.627 45.455 13.27 2.27 35.26 3.36
2079 2180 2.746362 GACTGAGAACTGGCATTTCCTG 59.254 50.000 13.27 11.01 39.46 3.86
2081 2182 2.486982 CTGAGAACTGGCATTTCCTGTG 59.513 50.000 13.27 0.00 45.00 3.66
2082 2183 1.200948 GAGAACTGGCATTTCCTGTGC 59.799 52.381 13.27 0.00 45.00 4.57
2083 2184 1.202976 AGAACTGGCATTTCCTGTGCT 60.203 47.619 13.27 0.00 45.11 4.40
2084 2185 1.615392 GAACTGGCATTTCCTGTGCTT 59.385 47.619 6.32 0.00 45.00 3.91
2085 2186 1.708341 ACTGGCATTTCCTGTGCTTT 58.292 45.000 0.00 0.00 44.21 3.51
2086 2187 2.875296 ACTGGCATTTCCTGTGCTTTA 58.125 42.857 0.00 0.00 44.21 1.85
2087 2188 2.558359 ACTGGCATTTCCTGTGCTTTAC 59.442 45.455 0.00 0.00 44.21 2.01
2088 2189 2.821969 CTGGCATTTCCTGTGCTTTACT 59.178 45.455 0.00 0.00 42.16 2.24
2089 2190 3.230134 TGGCATTTCCTGTGCTTTACTT 58.770 40.909 0.00 0.00 42.16 2.24
2090 2191 3.640967 TGGCATTTCCTGTGCTTTACTTT 59.359 39.130 0.00 0.00 42.16 2.66
2091 2192 4.100808 TGGCATTTCCTGTGCTTTACTTTT 59.899 37.500 0.00 0.00 42.16 2.27
2092 2193 4.686091 GGCATTTCCTGTGCTTTACTTTTC 59.314 41.667 0.00 0.00 42.16 2.29
2093 2194 5.509670 GGCATTTCCTGTGCTTTACTTTTCT 60.510 40.000 0.00 0.00 42.16 2.52
2094 2195 5.985530 GCATTTCCTGTGCTTTACTTTTCTT 59.014 36.000 0.00 0.00 39.45 2.52
2095 2196 6.074142 GCATTTCCTGTGCTTTACTTTTCTTG 60.074 38.462 0.00 0.00 39.45 3.02
2096 2197 6.767524 TTTCCTGTGCTTTACTTTTCTTGA 57.232 33.333 0.00 0.00 0.00 3.02
2097 2198 5.751243 TCCTGTGCTTTACTTTTCTTGAC 57.249 39.130 0.00 0.00 0.00 3.18
2098 2199 5.437060 TCCTGTGCTTTACTTTTCTTGACT 58.563 37.500 0.00 0.00 0.00 3.41
2099 2200 5.296780 TCCTGTGCTTTACTTTTCTTGACTG 59.703 40.000 0.00 0.00 0.00 3.51
2100 2201 5.296780 CCTGTGCTTTACTTTTCTTGACTGA 59.703 40.000 0.00 0.00 0.00 3.41
2101 2202 6.363577 TGTGCTTTACTTTTCTTGACTGAG 57.636 37.500 0.00 0.00 0.00 3.35
2102 2203 6.112734 TGTGCTTTACTTTTCTTGACTGAGA 58.887 36.000 0.00 0.00 0.00 3.27
2103 2204 6.597672 TGTGCTTTACTTTTCTTGACTGAGAA 59.402 34.615 0.00 0.00 34.00 2.87
2104 2205 6.907748 GTGCTTTACTTTTCTTGACTGAGAAC 59.092 38.462 0.00 0.00 35.50 3.01
2105 2206 6.823689 TGCTTTACTTTTCTTGACTGAGAACT 59.176 34.615 0.00 0.00 35.50 3.01
2106 2207 7.128976 GCTTTACTTTTCTTGACTGAGAACTG 58.871 38.462 0.00 0.00 35.50 3.16
2107 2208 7.553881 TTTACTTTTCTTGACTGAGAACTGG 57.446 36.000 0.00 0.00 35.50 4.00
2108 2209 3.879892 ACTTTTCTTGACTGAGAACTGGC 59.120 43.478 0.00 0.00 35.50 4.85
2109 2210 3.558931 TTTCTTGACTGAGAACTGGCA 57.441 42.857 0.00 0.00 35.50 4.92
2110 2211 3.777106 TTCTTGACTGAGAACTGGCAT 57.223 42.857 0.00 0.00 33.22 4.40
2111 2212 3.777106 TCTTGACTGAGAACTGGCATT 57.223 42.857 0.00 0.00 33.22 3.56
2112 2213 4.090761 TCTTGACTGAGAACTGGCATTT 57.909 40.909 0.00 0.00 33.22 2.32
2113 2214 4.067896 TCTTGACTGAGAACTGGCATTTC 58.932 43.478 9.36 9.36 33.22 2.17
2114 2215 2.783135 TGACTGAGAACTGGCATTTCC 58.217 47.619 13.27 6.55 0.00 3.13
2115 2216 2.373169 TGACTGAGAACTGGCATTTCCT 59.627 45.455 13.27 2.27 35.26 3.36
2116 2217 2.746362 GACTGAGAACTGGCATTTCCTG 59.254 50.000 13.27 11.01 39.46 3.86
2118 2219 2.486982 CTGAGAACTGGCATTTCCTGTG 59.513 50.000 13.27 0.00 45.00 3.66
2119 2220 1.200948 GAGAACTGGCATTTCCTGTGC 59.799 52.381 13.27 0.00 45.00 4.57
2120 2221 1.202976 AGAACTGGCATTTCCTGTGCT 60.203 47.619 13.27 0.00 45.11 4.40
2121 2222 1.615392 GAACTGGCATTTCCTGTGCTT 59.385 47.619 6.32 0.00 45.00 3.91
2122 2223 1.708341 ACTGGCATTTCCTGTGCTTT 58.292 45.000 0.00 0.00 44.21 3.51
2123 2224 2.875296 ACTGGCATTTCCTGTGCTTTA 58.125 42.857 0.00 0.00 44.21 1.85
2124 2225 2.558359 ACTGGCATTTCCTGTGCTTTAC 59.442 45.455 0.00 0.00 44.21 2.01
2125 2226 2.821969 CTGGCATTTCCTGTGCTTTACT 59.178 45.455 0.00 0.00 42.16 2.24
2126 2227 3.230134 TGGCATTTCCTGTGCTTTACTT 58.770 40.909 0.00 0.00 42.16 2.24
2127 2228 3.640967 TGGCATTTCCTGTGCTTTACTTT 59.359 39.130 0.00 0.00 42.16 2.66
2128 2229 4.100808 TGGCATTTCCTGTGCTTTACTTTT 59.899 37.500 0.00 0.00 42.16 2.27
2129 2230 4.686091 GGCATTTCCTGTGCTTTACTTTTC 59.314 41.667 0.00 0.00 42.16 2.29
2130 2231 5.509670 GGCATTTCCTGTGCTTTACTTTTCT 60.510 40.000 0.00 0.00 42.16 2.52
2131 2232 5.985530 GCATTTCCTGTGCTTTACTTTTCTT 59.014 36.000 0.00 0.00 39.45 2.52
2132 2233 6.074142 GCATTTCCTGTGCTTTACTTTTCTTG 60.074 38.462 0.00 0.00 39.45 3.02
2133 2234 6.767524 TTTCCTGTGCTTTACTTTTCTTGA 57.232 33.333 0.00 0.00 0.00 3.02
2134 2235 5.751243 TCCTGTGCTTTACTTTTCTTGAC 57.249 39.130 0.00 0.00 0.00 3.18
2135 2236 5.437060 TCCTGTGCTTTACTTTTCTTGACT 58.563 37.500 0.00 0.00 0.00 3.41
2136 2237 5.296780 TCCTGTGCTTTACTTTTCTTGACTG 59.703 40.000 0.00 0.00 0.00 3.51
2137 2238 5.296780 CCTGTGCTTTACTTTTCTTGACTGA 59.703 40.000 0.00 0.00 0.00 3.41
2138 2239 6.363577 TGTGCTTTACTTTTCTTGACTGAG 57.636 37.500 0.00 0.00 0.00 3.35
2139 2240 6.112734 TGTGCTTTACTTTTCTTGACTGAGA 58.887 36.000 0.00 0.00 0.00 3.27
2140 2241 6.597672 TGTGCTTTACTTTTCTTGACTGAGAA 59.402 34.615 0.00 0.00 34.00 2.87
2141 2242 6.907748 GTGCTTTACTTTTCTTGACTGAGAAC 59.092 38.462 0.00 0.00 35.50 3.01
2142 2243 6.823689 TGCTTTACTTTTCTTGACTGAGAACT 59.176 34.615 0.00 0.00 35.50 3.01
2143 2244 7.985184 TGCTTTACTTTTCTTGACTGAGAACTA 59.015 33.333 0.00 0.00 35.50 2.24
2144 2245 8.491950 GCTTTACTTTTCTTGACTGAGAACTAG 58.508 37.037 0.00 0.00 35.50 2.57
2145 2246 7.948278 TTACTTTTCTTGACTGAGAACTAGC 57.052 36.000 0.00 0.00 35.50 3.42
2146 2247 5.918608 ACTTTTCTTGACTGAGAACTAGCA 58.081 37.500 0.00 0.00 35.50 3.49
2147 2248 6.529220 ACTTTTCTTGACTGAGAACTAGCAT 58.471 36.000 0.00 0.00 35.50 3.79
2148 2249 6.995091 ACTTTTCTTGACTGAGAACTAGCATT 59.005 34.615 0.00 0.00 35.50 3.56
2149 2250 7.500559 ACTTTTCTTGACTGAGAACTAGCATTT 59.499 33.333 0.00 0.00 35.50 2.32
2150 2251 7.426929 TTTCTTGACTGAGAACTAGCATTTC 57.573 36.000 0.00 0.00 35.50 2.17
2151 2252 5.482908 TCTTGACTGAGAACTAGCATTTCC 58.517 41.667 0.00 0.00 0.00 3.13
2152 2253 5.247110 TCTTGACTGAGAACTAGCATTTCCT 59.753 40.000 0.00 0.00 0.00 3.36
2153 2254 4.825422 TGACTGAGAACTAGCATTTCCTG 58.175 43.478 0.00 0.00 0.00 3.86
2154 2255 4.284490 TGACTGAGAACTAGCATTTCCTGT 59.716 41.667 0.00 0.00 0.00 4.00
2155 2256 4.573900 ACTGAGAACTAGCATTTCCTGTG 58.426 43.478 0.00 0.00 0.00 3.66
2156 2257 3.338249 TGAGAACTAGCATTTCCTGTGC 58.662 45.455 0.00 0.00 42.81 4.57
2170 2271 5.751243 TTCCTGTGCTTTACTTTCTTGAC 57.249 39.130 0.00 0.00 0.00 3.18
2175 2276 5.670485 TGTGCTTTACTTTCTTGACTGAGA 58.330 37.500 0.00 0.00 0.00 3.27
2203 2304 7.509141 TCAGCAAATTAAGATTGACAACTGA 57.491 32.000 7.71 7.46 0.00 3.41
2206 2307 9.199982 CAGCAAATTAAGATTGACAACTGAAAT 57.800 29.630 7.71 0.00 0.00 2.17
2220 2321 9.166173 TGACAACTGAAATACTATCAGATTTGG 57.834 33.333 10.27 0.00 45.74 3.28
2233 2334 4.318332 TCAGATTTGGTAGTCTTGTGCTG 58.682 43.478 0.00 0.00 0.00 4.41
2242 2343 5.105716 TGGTAGTCTTGTGCTGATACTTCTC 60.106 44.000 0.00 0.00 0.00 2.87
2243 2344 5.105716 GGTAGTCTTGTGCTGATACTTCTCA 60.106 44.000 0.00 0.00 0.00 3.27
2245 2346 4.526262 AGTCTTGTGCTGATACTTCTCAGT 59.474 41.667 3.31 0.00 43.75 3.41
2246 2347 5.011533 AGTCTTGTGCTGATACTTCTCAGTT 59.988 40.000 3.31 0.00 43.75 3.16
2247 2348 5.347364 GTCTTGTGCTGATACTTCTCAGTTC 59.653 44.000 3.31 0.00 43.75 3.01
2249 2350 5.065704 TGTGCTGATACTTCTCAGTTCTC 57.934 43.478 3.31 0.00 43.75 2.87
2252 2353 4.081972 TGCTGATACTTCTCAGTTCTCACC 60.082 45.833 3.31 0.00 43.75 4.02
2254 2355 5.567623 GCTGATACTTCTCAGTTCTCACCAA 60.568 44.000 3.31 0.00 43.75 3.67
2255 2356 6.611613 TGATACTTCTCAGTTCTCACCAAT 57.388 37.500 0.00 0.00 34.06 3.16
2257 2358 8.134202 TGATACTTCTCAGTTCTCACCAATTA 57.866 34.615 0.00 0.00 34.06 1.40
2258 2359 8.762645 TGATACTTCTCAGTTCTCACCAATTAT 58.237 33.333 0.00 0.00 34.06 1.28
2260 2361 7.009179 ACTTCTCAGTTCTCACCAATTATGA 57.991 36.000 0.00 0.00 0.00 2.15
2261 2362 7.628234 ACTTCTCAGTTCTCACCAATTATGAT 58.372 34.615 0.00 0.00 0.00 2.45
2263 2364 9.775854 CTTCTCAGTTCTCACCAATTATGATAT 57.224 33.333 0.00 0.00 0.00 1.63
2266 2367 9.429359 CTCAGTTCTCACCAATTATGATATACC 57.571 37.037 0.00 0.00 0.00 2.73
2268 2369 8.993121 CAGTTCTCACCAATTATGATATACCAC 58.007 37.037 0.00 0.00 0.00 4.16
2291 2509 2.985896 TGTACTTGCATAACTGAGGCC 58.014 47.619 0.00 0.00 32.41 5.19
2296 2514 0.253044 TGCATAACTGAGGCCTGACC 59.747 55.000 12.00 0.00 32.41 4.02
2368 2589 2.564062 CCAAAGTGGATTGGCAGAATGT 59.436 45.455 0.00 0.00 43.11 2.71
2411 2632 4.755266 TCCTGAATCCTAACTAAGTGCC 57.245 45.455 0.00 0.00 0.00 5.01
2417 2638 6.055588 TGAATCCTAACTAAGTGCCTATTGC 58.944 40.000 0.00 0.00 41.77 3.56
2420 2641 4.051922 CCTAACTAAGTGCCTATTGCGAG 58.948 47.826 0.00 0.00 45.60 5.03
2426 2647 1.279271 AGTGCCTATTGCGAGGAGTTT 59.721 47.619 3.40 0.00 45.60 2.66
2438 2659 4.649674 TGCGAGGAGTTTATTCCATAGAGT 59.350 41.667 0.00 0.00 39.84 3.24
2439 2660 5.128827 TGCGAGGAGTTTATTCCATAGAGTT 59.871 40.000 0.00 0.00 39.84 3.01
2440 2661 6.322969 TGCGAGGAGTTTATTCCATAGAGTTA 59.677 38.462 0.00 0.00 39.84 2.24
2442 2663 7.873505 GCGAGGAGTTTATTCCATAGAGTTATT 59.126 37.037 0.00 0.00 39.84 1.40
2568 2806 3.308401 TCATGGAGCTGTAATAGGAGCA 58.692 45.455 0.00 0.00 37.70 4.26
2634 2872 3.369471 GGCAGGTAAAGATACTGACTGCA 60.369 47.826 14.58 0.00 42.13 4.41
2648 2888 6.449635 ACTGACTGCAACTTTTTGAATACA 57.550 33.333 0.00 0.00 34.24 2.29
2662 2902 3.224269 TGAATACATATGGGACGACCGA 58.776 45.455 7.80 0.00 44.64 4.69
2687 2927 4.261614 CGAGTATCATGAAAGACGGGATCA 60.262 45.833 0.00 0.00 33.17 2.92
2712 2952 9.223099 CATGTAGAGATGTTTATGCATATCCAA 57.777 33.333 7.36 0.00 37.70 3.53
2757 2997 5.297278 AGACTAGCTCGTGGACTAACTATTG 59.703 44.000 0.00 0.00 0.00 1.90
2769 3009 5.241064 GGACTAACTATTGAGAGCGGTGATA 59.759 44.000 0.00 0.00 0.00 2.15
2909 3317 6.409704 CACATGGATGAGACTTCCTTTTCTA 58.590 40.000 0.00 0.00 34.17 2.10
2922 3330 8.422577 ACTTCCTTTTCTATGCCTTACAATTT 57.577 30.769 0.00 0.00 0.00 1.82
2925 3333 8.288689 TCCTTTTCTATGCCTTACAATTTACC 57.711 34.615 0.00 0.00 0.00 2.85
2931 3339 3.340034 TGCCTTACAATTTACCGTCTGG 58.660 45.455 0.00 0.00 42.84 3.86
2973 3381 6.476243 GCTTTTGCAATTCATGATTCTGTT 57.524 33.333 0.00 0.00 46.58 3.16
2974 3382 6.894828 GCTTTTGCAATTCATGATTCTGTTT 58.105 32.000 0.00 0.00 46.58 2.83
3060 3468 4.420522 TGTGATTGGCATGCTAGTATCA 57.579 40.909 18.92 15.37 0.00 2.15
3092 3500 5.244851 TCATAGTTGCTCACAAGAGAAGAGT 59.755 40.000 0.00 0.00 44.98 3.24
3248 3656 1.443802 GTGCCTTCCAGTAGCTTGAC 58.556 55.000 0.00 0.00 0.00 3.18
3291 3699 3.335484 ACTCATTTACCTTTTGGGGGCTA 59.665 43.478 0.00 0.00 46.08 3.93
3313 3721 9.331282 GGCTAAAGATTATTTTCTTCAGAGCTA 57.669 33.333 0.00 0.00 36.76 3.32
3354 3762 8.034804 AGACTGATTGCCATTTGGTATTTTTAC 58.965 33.333 0.00 0.00 37.57 2.01
3355 3763 7.675062 ACTGATTGCCATTTGGTATTTTTACA 58.325 30.769 0.00 0.00 37.57 2.41
3356 3764 8.320617 ACTGATTGCCATTTGGTATTTTTACAT 58.679 29.630 0.00 0.00 37.57 2.29
3588 3997 1.394917 GCAGGATTTAGTCTGTGCACG 59.605 52.381 13.13 7.36 36.99 5.34
3705 4114 3.872603 TGAAGCAGGTGCACCGGT 61.873 61.111 32.29 26.51 45.16 5.28
3901 4310 1.536940 CATCTGCAACCCATCACACA 58.463 50.000 0.00 0.00 0.00 3.72
3926 4337 7.227314 CAGATTACATGATTAAGGCTGCTGTTA 59.773 37.037 0.00 0.00 0.00 2.41
4064 4475 1.827344 ACGACCTTCATGATGCTCAGA 59.173 47.619 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.388134 CTGTGGCTTGTGCATCTTGC 60.388 55.000 0.00 0.00 45.29 4.01
23 24 0.242825 CCTGTGGCTTGTGCATCTTG 59.757 55.000 0.00 0.00 41.91 3.02
24 25 0.896940 CCCTGTGGCTTGTGCATCTT 60.897 55.000 0.00 0.00 41.91 2.40
25 26 1.303888 CCCTGTGGCTTGTGCATCT 60.304 57.895 0.00 0.00 41.91 2.90
26 27 0.682209 ATCCCTGTGGCTTGTGCATC 60.682 55.000 0.00 0.00 41.91 3.91
27 28 0.968901 CATCCCTGTGGCTTGTGCAT 60.969 55.000 0.00 0.00 41.91 3.96
28 29 1.604308 CATCCCTGTGGCTTGTGCA 60.604 57.895 0.00 0.00 41.91 4.57
29 30 0.895100 TTCATCCCTGTGGCTTGTGC 60.895 55.000 0.00 0.00 38.76 4.57
30 31 1.171308 CTTCATCCCTGTGGCTTGTG 58.829 55.000 0.00 0.00 0.00 3.33
31 32 1.067295 TCTTCATCCCTGTGGCTTGT 58.933 50.000 0.00 0.00 0.00 3.16
32 33 2.022195 CATCTTCATCCCTGTGGCTTG 58.978 52.381 0.00 0.00 0.00 4.01
33 34 1.637553 ACATCTTCATCCCTGTGGCTT 59.362 47.619 0.00 0.00 0.00 4.35
34 35 1.211457 GACATCTTCATCCCTGTGGCT 59.789 52.381 0.00 0.00 0.00 4.75
35 36 1.211457 AGACATCTTCATCCCTGTGGC 59.789 52.381 0.00 0.00 0.00 5.01
36 37 2.482664 CGAGACATCTTCATCCCTGTGG 60.483 54.545 0.00 0.00 0.00 4.17
37 38 2.428530 TCGAGACATCTTCATCCCTGTG 59.571 50.000 0.00 0.00 0.00 3.66
38 39 2.739943 TCGAGACATCTTCATCCCTGT 58.260 47.619 0.00 0.00 0.00 4.00
39 40 4.333913 AATCGAGACATCTTCATCCCTG 57.666 45.455 0.00 0.00 0.00 4.45
40 41 5.541868 ACATAATCGAGACATCTTCATCCCT 59.458 40.000 0.00 0.00 0.00 4.20
41 42 5.788450 ACATAATCGAGACATCTTCATCCC 58.212 41.667 0.00 0.00 0.00 3.85
42 43 6.146837 CCAACATAATCGAGACATCTTCATCC 59.853 42.308 0.00 0.00 0.00 3.51
43 44 6.703607 ACCAACATAATCGAGACATCTTCATC 59.296 38.462 0.00 0.00 0.00 2.92
44 45 6.586344 ACCAACATAATCGAGACATCTTCAT 58.414 36.000 0.00 0.00 0.00 2.57
45 46 5.977635 ACCAACATAATCGAGACATCTTCA 58.022 37.500 0.00 0.00 0.00 3.02
46 47 6.910536 AACCAACATAATCGAGACATCTTC 57.089 37.500 0.00 0.00 0.00 2.87
47 48 7.782049 TCTAACCAACATAATCGAGACATCTT 58.218 34.615 0.00 0.00 0.00 2.40
48 49 7.348080 TCTAACCAACATAATCGAGACATCT 57.652 36.000 0.00 0.00 0.00 2.90
49 50 8.594881 AATCTAACCAACATAATCGAGACATC 57.405 34.615 0.00 0.00 0.00 3.06
50 51 8.830580 CAAATCTAACCAACATAATCGAGACAT 58.169 33.333 0.00 0.00 0.00 3.06
51 52 7.279981 CCAAATCTAACCAACATAATCGAGACA 59.720 37.037 0.00 0.00 0.00 3.41
52 53 7.254795 CCCAAATCTAACCAACATAATCGAGAC 60.255 40.741 0.00 0.00 0.00 3.36
53 54 6.765989 CCCAAATCTAACCAACATAATCGAGA 59.234 38.462 0.00 0.00 0.00 4.04
54 55 6.017109 CCCCAAATCTAACCAACATAATCGAG 60.017 42.308 0.00 0.00 0.00 4.04
55 56 5.825679 CCCCAAATCTAACCAACATAATCGA 59.174 40.000 0.00 0.00 0.00 3.59
56 57 5.825679 TCCCCAAATCTAACCAACATAATCG 59.174 40.000 0.00 0.00 0.00 3.34
57 58 7.342026 AGTTCCCCAAATCTAACCAACATAATC 59.658 37.037 0.00 0.00 0.00 1.75
58 59 7.124147 CAGTTCCCCAAATCTAACCAACATAAT 59.876 37.037 0.00 0.00 0.00 1.28
59 60 6.435904 CAGTTCCCCAAATCTAACCAACATAA 59.564 38.462 0.00 0.00 0.00 1.90
60 61 5.949354 CAGTTCCCCAAATCTAACCAACATA 59.051 40.000 0.00 0.00 0.00 2.29
61 62 4.772100 CAGTTCCCCAAATCTAACCAACAT 59.228 41.667 0.00 0.00 0.00 2.71
62 63 4.148838 CAGTTCCCCAAATCTAACCAACA 58.851 43.478 0.00 0.00 0.00 3.33
63 64 3.509967 CCAGTTCCCCAAATCTAACCAAC 59.490 47.826 0.00 0.00 0.00 3.77
64 65 3.141272 ACCAGTTCCCCAAATCTAACCAA 59.859 43.478 0.00 0.00 0.00 3.67
65 66 2.719705 ACCAGTTCCCCAAATCTAACCA 59.280 45.455 0.00 0.00 0.00 3.67
66 67 3.089284 CACCAGTTCCCCAAATCTAACC 58.911 50.000 0.00 0.00 0.00 2.85
67 68 3.756963 GTCACCAGTTCCCCAAATCTAAC 59.243 47.826 0.00 0.00 0.00 2.34
68 69 3.245122 GGTCACCAGTTCCCCAAATCTAA 60.245 47.826 0.00 0.00 0.00 2.10
69 70 2.307686 GGTCACCAGTTCCCCAAATCTA 59.692 50.000 0.00 0.00 0.00 1.98
70 71 1.075536 GGTCACCAGTTCCCCAAATCT 59.924 52.381 0.00 0.00 0.00 2.40
71 72 1.203001 TGGTCACCAGTTCCCCAAATC 60.203 52.381 0.00 0.00 0.00 2.17
72 73 0.856982 TGGTCACCAGTTCCCCAAAT 59.143 50.000 0.00 0.00 0.00 2.32
73 74 0.184933 CTGGTCACCAGTTCCCCAAA 59.815 55.000 16.65 0.00 45.82 3.28
74 75 1.843421 CTGGTCACCAGTTCCCCAA 59.157 57.895 16.65 0.00 45.82 4.12
75 76 3.574952 CTGGTCACCAGTTCCCCA 58.425 61.111 16.65 0.00 45.82 4.96
83 84 0.752658 CACTGTCTCACTGGTCACCA 59.247 55.000 0.00 0.00 0.00 4.17
84 85 1.040646 TCACTGTCTCACTGGTCACC 58.959 55.000 0.00 0.00 0.00 4.02
85 86 1.683917 AGTCACTGTCTCACTGGTCAC 59.316 52.381 0.00 0.00 0.00 3.67
86 87 1.683385 CAGTCACTGTCTCACTGGTCA 59.317 52.381 0.00 0.00 34.96 4.02
87 88 1.604185 GCAGTCACTGTCTCACTGGTC 60.604 57.143 6.68 0.00 38.40 4.02
88 89 0.390860 GCAGTCACTGTCTCACTGGT 59.609 55.000 6.68 0.00 38.40 4.00
89 90 0.390492 TGCAGTCACTGTCTCACTGG 59.610 55.000 6.68 0.00 38.40 4.00
90 91 2.452295 ATGCAGTCACTGTCTCACTG 57.548 50.000 6.68 6.68 40.53 3.66
91 92 2.632028 AGAATGCAGTCACTGTCTCACT 59.368 45.455 17.53 0.00 33.43 3.41
92 93 2.992543 GAGAATGCAGTCACTGTCTCAC 59.007 50.000 17.53 2.91 32.46 3.51
93 94 2.629617 TGAGAATGCAGTCACTGTCTCA 59.370 45.455 18.30 18.30 36.46 3.27
94 95 3.309961 TGAGAATGCAGTCACTGTCTC 57.690 47.619 17.53 14.35 33.43 3.36
95 96 3.260128 TCATGAGAATGCAGTCACTGTCT 59.740 43.478 17.53 0.91 33.43 3.41
96 97 3.593096 TCATGAGAATGCAGTCACTGTC 58.407 45.455 17.53 5.56 33.43 3.51
97 98 3.690475 TCATGAGAATGCAGTCACTGT 57.310 42.857 17.53 0.74 33.43 3.55
98 99 5.332707 CATTTCATGAGAATGCAGTCACTG 58.667 41.667 17.53 10.21 32.89 3.66
99 100 4.142447 GCATTTCATGAGAATGCAGTCACT 60.142 41.667 30.03 0.00 37.78 3.41
100 101 4.103357 GCATTTCATGAGAATGCAGTCAC 58.897 43.478 30.03 10.99 37.78 3.67
101 102 3.129813 GGCATTTCATGAGAATGCAGTCA 59.870 43.478 32.58 7.78 38.69 3.41
102 103 3.129813 TGGCATTTCATGAGAATGCAGTC 59.870 43.478 32.58 23.95 38.69 3.51
103 104 3.093814 TGGCATTTCATGAGAATGCAGT 58.906 40.909 32.58 0.00 38.69 4.40
104 105 3.793797 TGGCATTTCATGAGAATGCAG 57.206 42.857 32.58 14.35 38.69 4.41
105 106 4.746535 ATTGGCATTTCATGAGAATGCA 57.253 36.364 32.58 23.34 38.69 3.96
106 107 4.260620 GCAATTGGCATTTCATGAGAATGC 60.261 41.667 28.63 28.63 43.97 3.56
107 108 5.403897 GCAATTGGCATTTCATGAGAATG 57.596 39.130 18.51 18.51 43.97 2.67
121 122 1.386412 CGACGTTTTCATGCAATTGGC 59.614 47.619 7.72 0.15 45.13 4.52
122 123 1.386412 GCGACGTTTTCATGCAATTGG 59.614 47.619 7.72 0.00 0.00 3.16
123 124 2.049959 TGCGACGTTTTCATGCAATTG 58.950 42.857 0.00 0.00 31.69 2.32
124 125 2.318578 CTGCGACGTTTTCATGCAATT 58.681 42.857 0.00 0.00 34.78 2.32
125 126 1.967762 CTGCGACGTTTTCATGCAAT 58.032 45.000 0.00 0.00 34.78 3.56
126 127 0.660005 GCTGCGACGTTTTCATGCAA 60.660 50.000 0.00 0.00 34.78 4.08
127 128 1.082169 GCTGCGACGTTTTCATGCA 60.082 52.632 0.00 0.00 0.00 3.96
128 129 0.454957 ATGCTGCGACGTTTTCATGC 60.455 50.000 0.00 0.00 0.00 4.06
129 130 1.253116 CATGCTGCGACGTTTTCATG 58.747 50.000 0.00 2.33 0.00 3.07
130 131 0.874390 ACATGCTGCGACGTTTTCAT 59.126 45.000 0.00 0.00 0.00 2.57
131 132 0.660488 AACATGCTGCGACGTTTTCA 59.340 45.000 0.00 0.00 0.00 2.69
132 133 2.587612 TAACATGCTGCGACGTTTTC 57.412 45.000 6.48 0.00 0.00 2.29
133 134 3.058570 TGATTAACATGCTGCGACGTTTT 60.059 39.130 6.48 0.00 0.00 2.43
134 135 2.482336 TGATTAACATGCTGCGACGTTT 59.518 40.909 6.48 0.00 0.00 3.60
135 136 2.073056 TGATTAACATGCTGCGACGTT 58.927 42.857 0.00 0.79 0.00 3.99
136 137 1.660607 CTGATTAACATGCTGCGACGT 59.339 47.619 0.00 0.00 0.00 4.34
137 138 1.660607 ACTGATTAACATGCTGCGACG 59.339 47.619 0.00 0.00 0.00 5.12
138 139 2.030946 GGACTGATTAACATGCTGCGAC 59.969 50.000 0.00 0.00 0.00 5.19
139 140 2.279741 GGACTGATTAACATGCTGCGA 58.720 47.619 0.00 0.00 0.00 5.10
140 141 2.009051 TGGACTGATTAACATGCTGCG 58.991 47.619 0.00 0.00 0.00 5.18
141 142 3.728864 CGTTGGACTGATTAACATGCTGC 60.729 47.826 0.00 0.00 0.00 5.25
142 143 3.436704 ACGTTGGACTGATTAACATGCTG 59.563 43.478 0.00 0.00 0.00 4.41
143 144 3.436704 CACGTTGGACTGATTAACATGCT 59.563 43.478 0.00 0.00 0.00 3.79
144 145 3.435327 TCACGTTGGACTGATTAACATGC 59.565 43.478 0.00 0.00 0.00 4.06
145 146 4.450757 TGTCACGTTGGACTGATTAACATG 59.549 41.667 7.46 0.00 38.61 3.21
146 147 4.637276 TGTCACGTTGGACTGATTAACAT 58.363 39.130 7.46 0.00 38.61 2.71
147 148 4.061357 TGTCACGTTGGACTGATTAACA 57.939 40.909 7.46 0.00 38.61 2.41
148 149 4.510340 ACTTGTCACGTTGGACTGATTAAC 59.490 41.667 7.46 0.00 38.61 2.01
149 150 4.699637 ACTTGTCACGTTGGACTGATTAA 58.300 39.130 7.46 0.00 38.61 1.40
150 151 4.330944 ACTTGTCACGTTGGACTGATTA 57.669 40.909 7.46 0.00 38.61 1.75
151 152 3.194005 ACTTGTCACGTTGGACTGATT 57.806 42.857 7.46 0.00 38.61 2.57
152 153 2.910688 ACTTGTCACGTTGGACTGAT 57.089 45.000 7.46 0.00 38.61 2.90
153 154 2.684001 AACTTGTCACGTTGGACTGA 57.316 45.000 7.46 0.00 38.61 3.41
154 155 3.191669 TGTAACTTGTCACGTTGGACTG 58.808 45.455 5.02 3.69 38.61 3.51
155 156 3.530265 TGTAACTTGTCACGTTGGACT 57.470 42.857 5.02 0.00 38.61 3.85
156 157 5.464389 ACTTATGTAACTTGTCACGTTGGAC 59.536 40.000 5.02 0.00 38.29 4.02
157 158 5.603596 ACTTATGTAACTTGTCACGTTGGA 58.396 37.500 5.02 0.00 0.00 3.53
158 159 5.917541 ACTTATGTAACTTGTCACGTTGG 57.082 39.130 5.02 0.00 0.00 3.77
159 160 6.999627 CGTAACTTATGTAACTTGTCACGTTG 59.000 38.462 5.02 0.00 0.00 4.10
160 161 6.346040 GCGTAACTTATGTAACTTGTCACGTT 60.346 38.462 0.00 0.00 0.00 3.99
161 162 5.117592 GCGTAACTTATGTAACTTGTCACGT 59.882 40.000 0.00 0.00 0.00 4.49
162 163 5.117440 TGCGTAACTTATGTAACTTGTCACG 59.883 40.000 0.00 0.00 0.00 4.35
163 164 6.456447 TGCGTAACTTATGTAACTTGTCAC 57.544 37.500 0.00 0.00 0.00 3.67
164 165 7.411049 CGAATGCGTAACTTATGTAACTTGTCA 60.411 37.037 0.00 0.00 0.00 3.58
165 166 6.892951 CGAATGCGTAACTTATGTAACTTGTC 59.107 38.462 0.00 0.00 0.00 3.18
166 167 6.587226 TCGAATGCGTAACTTATGTAACTTGT 59.413 34.615 0.00 0.00 38.98 3.16
167 168 6.985013 TCGAATGCGTAACTTATGTAACTTG 58.015 36.000 0.00 0.00 38.98 3.16
168 169 7.585286 TTCGAATGCGTAACTTATGTAACTT 57.415 32.000 0.00 0.00 38.98 2.66
169 170 7.585286 TTTCGAATGCGTAACTTATGTAACT 57.415 32.000 0.00 0.00 38.98 2.24
170 171 8.111836 TGATTTCGAATGCGTAACTTATGTAAC 58.888 33.333 0.00 0.00 38.98 2.50
171 172 8.187354 TGATTTCGAATGCGTAACTTATGTAA 57.813 30.769 0.00 0.00 38.98 2.41
172 173 7.758613 TGATTTCGAATGCGTAACTTATGTA 57.241 32.000 0.00 0.00 38.98 2.29
173 174 6.656314 TGATTTCGAATGCGTAACTTATGT 57.344 33.333 0.00 0.00 38.98 2.29
174 175 7.318909 GTGATGATTTCGAATGCGTAACTTATG 59.681 37.037 0.00 0.00 38.98 1.90
175 176 7.345192 GTGATGATTTCGAATGCGTAACTTAT 58.655 34.615 0.00 0.00 38.98 1.73
176 177 6.507299 CGTGATGATTTCGAATGCGTAACTTA 60.507 38.462 0.00 0.00 38.98 2.24
177 178 5.560148 GTGATGATTTCGAATGCGTAACTT 58.440 37.500 0.00 0.00 38.98 2.66
178 179 4.259810 CGTGATGATTTCGAATGCGTAACT 60.260 41.667 0.00 0.00 38.98 2.24
179 180 3.953853 CGTGATGATTTCGAATGCGTAAC 59.046 43.478 0.00 0.00 38.98 2.50
180 181 3.000825 CCGTGATGATTTCGAATGCGTAA 59.999 43.478 0.00 0.00 38.98 3.18
181 182 2.538037 CCGTGATGATTTCGAATGCGTA 59.462 45.455 0.00 0.00 38.98 4.42
182 183 1.327460 CCGTGATGATTTCGAATGCGT 59.673 47.619 0.00 0.00 38.98 5.24
183 184 1.917252 GCCGTGATGATTTCGAATGCG 60.917 52.381 0.00 0.00 39.35 4.73
184 185 1.331756 AGCCGTGATGATTTCGAATGC 59.668 47.619 0.00 0.00 0.00 3.56
185 186 3.185188 CCTAGCCGTGATGATTTCGAATG 59.815 47.826 0.00 0.00 0.00 2.67
186 187 3.393800 CCTAGCCGTGATGATTTCGAAT 58.606 45.455 0.00 0.00 0.00 3.34
187 188 2.483013 CCCTAGCCGTGATGATTTCGAA 60.483 50.000 0.00 0.00 0.00 3.71
188 189 1.068588 CCCTAGCCGTGATGATTTCGA 59.931 52.381 0.00 0.00 0.00 3.71
189 190 1.202533 ACCCTAGCCGTGATGATTTCG 60.203 52.381 0.00 0.00 0.00 3.46
190 191 2.622064 ACCCTAGCCGTGATGATTTC 57.378 50.000 0.00 0.00 0.00 2.17
191 192 2.104281 GGTACCCTAGCCGTGATGATTT 59.896 50.000 0.00 0.00 0.00 2.17
192 193 1.692519 GGTACCCTAGCCGTGATGATT 59.307 52.381 0.00 0.00 0.00 2.57
193 194 1.133136 AGGTACCCTAGCCGTGATGAT 60.133 52.381 8.74 0.00 28.47 2.45
194 195 0.260816 AGGTACCCTAGCCGTGATGA 59.739 55.000 8.74 0.00 28.47 2.92
195 196 1.120530 AAGGTACCCTAGCCGTGATG 58.879 55.000 8.74 0.00 31.13 3.07
196 197 2.697229 GTTAAGGTACCCTAGCCGTGAT 59.303 50.000 8.74 0.00 31.13 3.06
197 198 2.102578 GTTAAGGTACCCTAGCCGTGA 58.897 52.381 8.74 0.00 31.13 4.35
198 199 1.826720 TGTTAAGGTACCCTAGCCGTG 59.173 52.381 8.74 0.00 31.13 4.94
199 200 2.105766 CTGTTAAGGTACCCTAGCCGT 58.894 52.381 8.74 0.00 31.13 5.68
200 201 1.411612 CCTGTTAAGGTACCCTAGCCG 59.588 57.143 8.74 0.00 38.96 5.52
212 213 2.476619 CTCACTGTTGCGACCTGTTAAG 59.523 50.000 0.45 0.00 0.00 1.85
224 225 0.870393 AATCACGCAGCTCACTGTTG 59.130 50.000 0.00 0.00 46.30 3.33
229 230 6.106877 TCTAAATTTAATCACGCAGCTCAC 57.893 37.500 0.00 0.00 0.00 3.51
237 238 6.912591 GCAGTGGGAATCTAAATTTAATCACG 59.087 38.462 0.00 0.00 0.00 4.35
238 239 7.771183 TGCAGTGGGAATCTAAATTTAATCAC 58.229 34.615 0.00 0.78 0.00 3.06
239 240 7.068593 CCTGCAGTGGGAATCTAAATTTAATCA 59.931 37.037 13.81 0.00 0.00 2.57
242 243 6.489603 TCCTGCAGTGGGAATCTAAATTTAA 58.510 36.000 13.81 0.00 0.00 1.52
249 250 2.550277 TCTCCTGCAGTGGGAATCTA 57.450 50.000 13.81 0.00 31.92 1.98
251 252 1.556911 TCTTCTCCTGCAGTGGGAATC 59.443 52.381 13.81 0.00 31.92 2.52
260 261 1.669115 GTTGCGCTCTTCTCCTGCA 60.669 57.895 9.73 0.00 0.00 4.41
268 269 0.036010 AGGTATGCTGTTGCGCTCTT 60.036 50.000 9.73 0.00 43.34 2.85
282 283 2.166664 GTCCTCACTTCGCTCAAGGTAT 59.833 50.000 0.00 0.00 36.26 2.73
357 358 1.611491 GGTCTCGGATCTGATGGTCTC 59.389 57.143 4.28 0.00 0.00 3.36
415 430 3.810687 AAGGTCAGTGGCCTCCCCA 62.811 63.158 18.69 0.00 42.79 4.96
417 432 2.671682 GAAGGTCAGTGGCCTCCC 59.328 66.667 18.69 8.61 34.81 4.30
418 433 2.671682 GGAAGGTCAGTGGCCTCC 59.328 66.667 18.69 15.91 34.81 4.30
419 434 1.617947 ATCGGAAGGTCAGTGGCCTC 61.618 60.000 18.69 10.57 34.81 4.70
420 435 1.613630 ATCGGAAGGTCAGTGGCCT 60.614 57.895 11.55 11.55 38.11 5.19
421 436 1.153349 GATCGGAAGGTCAGTGGCC 60.153 63.158 5.33 5.33 42.10 5.36
422 437 1.153349 GGATCGGAAGGTCAGTGGC 60.153 63.158 0.00 0.00 45.13 5.01
653 679 1.222115 GGCCACACGTCACACTCTTC 61.222 60.000 0.00 0.00 0.00 2.87
660 686 2.694829 AAGTCTCGGCCACACGTCAC 62.695 60.000 2.24 0.00 34.94 3.67
677 707 3.353836 CGGTCGCACCACCCAAAG 61.354 66.667 6.21 0.00 38.47 2.77
750 780 1.152830 GCGAGAGAGGGGGAGAGAT 59.847 63.158 0.00 0.00 0.00 2.75
876 911 1.284408 GCGCTGACTCTATCTCCCG 59.716 63.158 0.00 0.00 0.00 5.14
903 961 1.457009 GGTAGCCGAGGAGAAGCGAT 61.457 60.000 0.00 0.00 0.00 4.58
909 967 1.748122 GTCGTGGTAGCCGAGGAGA 60.748 63.158 5.87 0.00 34.56 3.71
914 972 2.117156 GCTAGGTCGTGGTAGCCGA 61.117 63.158 2.07 2.07 36.44 5.54
1163 1224 3.391382 GGAGGTGACGGGGTGAGG 61.391 72.222 0.00 0.00 0.00 3.86
1181 1242 2.094182 TCAGAAGATAGAACACGTGGGC 60.094 50.000 21.57 11.16 0.00 5.36
1191 1252 1.676746 CGTCCGGGTCAGAAGATAGA 58.323 55.000 0.00 0.00 0.00 1.98
1220 1281 2.433838 CGCCTCACAGACCTGCAG 60.434 66.667 6.78 6.78 0.00 4.41
1261 1323 4.292178 GGATCTCGCCGGAGCAGG 62.292 72.222 5.05 0.00 40.26 4.85
1299 1361 1.692411 GGGAAGAAACAGTTGGTGCT 58.308 50.000 0.00 0.00 0.00 4.40
1303 1365 2.143925 GAGACGGGAAGAAACAGTTGG 58.856 52.381 0.00 0.00 0.00 3.77
1322 1384 4.059511 CACTGTACAATGTTTGGTACGGA 58.940 43.478 15.43 0.00 45.44 4.69
1325 1387 7.030768 ACAAAACACTGTACAATGTTTGGTAC 58.969 34.615 31.40 0.00 46.41 3.34
1332 1394 7.148641 TGAACAAACAAAACACTGTACAATGT 58.851 30.769 3.67 3.67 0.00 2.71
1333 1395 7.328249 ACTGAACAAACAAAACACTGTACAATG 59.672 33.333 2.09 2.09 0.00 2.82
1335 1397 6.638873 CACTGAACAAACAAAACACTGTACAA 59.361 34.615 0.00 0.00 0.00 2.41
1336 1398 6.017026 TCACTGAACAAACAAAACACTGTACA 60.017 34.615 0.00 0.00 0.00 2.90
1337 1399 6.375377 TCACTGAACAAACAAAACACTGTAC 58.625 36.000 0.00 0.00 0.00 2.90
1338 1400 6.561737 TCACTGAACAAACAAAACACTGTA 57.438 33.333 0.00 0.00 0.00 2.74
1339 1401 5.446143 TCACTGAACAAACAAAACACTGT 57.554 34.783 0.00 0.00 0.00 3.55
1340 1402 7.220683 CCTTATCACTGAACAAACAAAACACTG 59.779 37.037 0.00 0.00 0.00 3.66
1341 1403 7.257722 CCTTATCACTGAACAAACAAAACACT 58.742 34.615 0.00 0.00 0.00 3.55
1342 1404 6.019881 GCCTTATCACTGAACAAACAAAACAC 60.020 38.462 0.00 0.00 0.00 3.32
1343 1405 6.039616 GCCTTATCACTGAACAAACAAAACA 58.960 36.000 0.00 0.00 0.00 2.83
1344 1406 5.173131 CGCCTTATCACTGAACAAACAAAAC 59.827 40.000 0.00 0.00 0.00 2.43
1345 1407 5.066634 TCGCCTTATCACTGAACAAACAAAA 59.933 36.000 0.00 0.00 0.00 2.44
1346 1408 4.576873 TCGCCTTATCACTGAACAAACAAA 59.423 37.500 0.00 0.00 0.00 2.83
1347 1409 4.130857 TCGCCTTATCACTGAACAAACAA 58.869 39.130 0.00 0.00 0.00 2.83
1348 1410 3.734463 TCGCCTTATCACTGAACAAACA 58.266 40.909 0.00 0.00 0.00 2.83
1349 1411 4.946784 ATCGCCTTATCACTGAACAAAC 57.053 40.909 0.00 0.00 0.00 2.93
1367 1436 2.159430 TGCAATCGAGGAAACACAATCG 59.841 45.455 0.00 0.00 36.54 3.34
1379 1448 2.352960 GCCTTAAGGAACTGCAATCGAG 59.647 50.000 26.21 0.00 40.86 4.04
1492 1564 0.101759 TCCTATACTTCACGCCGCAC 59.898 55.000 0.00 0.00 0.00 5.34
1494 1566 3.119602 TGATATCCTATACTTCACGCCGC 60.120 47.826 0.00 0.00 0.00 6.53
1498 1570 5.998553 ACGTGTGATATCCTATACTTCACG 58.001 41.667 11.28 11.28 46.97 4.35
1505 1577 8.262227 AGGTTTTTCAACGTGTGATATCCTATA 58.738 33.333 0.00 0.00 35.70 1.31
1518 1602 3.380004 TCAGCATCAAGGTTTTTCAACGT 59.620 39.130 0.00 0.00 33.13 3.99
1532 1616 3.292492 AATGGCTCAGATTCAGCATCA 57.708 42.857 0.00 0.00 38.77 3.07
1533 1617 3.188873 GCTAATGGCTCAGATTCAGCATC 59.811 47.826 0.00 0.00 38.77 3.91
1548 1632 4.060038 AGTCGTGAGTATTGGCTAATGG 57.940 45.455 5.42 0.00 0.00 3.16
1597 1681 5.179452 TCTGCTTGGCCTCTTATTTACTT 57.821 39.130 3.32 0.00 0.00 2.24
1599 1683 4.518249 ACTCTGCTTGGCCTCTTATTTAC 58.482 43.478 3.32 0.00 0.00 2.01
1602 1686 3.728385 AACTCTGCTTGGCCTCTTATT 57.272 42.857 3.32 0.00 0.00 1.40
1603 1687 5.379706 AATAACTCTGCTTGGCCTCTTAT 57.620 39.130 3.32 0.00 0.00 1.73
1604 1688 4.844349 AATAACTCTGCTTGGCCTCTTA 57.156 40.909 3.32 0.00 0.00 2.10
1617 1701 3.118371 CGGGCAGGTCCTAAAATAACTCT 60.118 47.826 0.00 0.00 34.39 3.24
1759 1846 2.533266 ATACGAGCATGTCATGGGAC 57.467 50.000 14.64 0.00 44.57 4.46
1770 1858 8.122472 TCCTGAATAAGAATCATATACGAGCA 57.878 34.615 0.00 0.00 0.00 4.26
1782 1870 7.865820 TGACTCCTGAATTCCTGAATAAGAAT 58.134 34.615 2.27 0.00 34.18 2.40
1785 1873 7.226325 GTCATGACTCCTGAATTCCTGAATAAG 59.774 40.741 18.83 0.00 0.00 1.73
1789 1877 4.533707 AGTCATGACTCCTGAATTCCTGAA 59.466 41.667 22.89 0.00 36.92 3.02
1809 1908 9.139174 CAAACATGGTAAATGGTTATTTGAGTC 57.861 33.333 0.00 0.00 37.12 3.36
1813 1912 9.265901 TCAACAAACATGGTAAATGGTTATTTG 57.734 29.630 0.00 0.00 37.12 2.32
1814 1913 9.838339 TTCAACAAACATGGTAAATGGTTATTT 57.162 25.926 0.00 0.00 39.69 1.40
1849 1949 6.896021 TCCCGTCAGAGAGGTATTATAAAG 57.104 41.667 0.00 0.00 0.00 1.85
1872 1973 5.210430 TGAATTGACATATCCTTGGGCAAT 58.790 37.500 0.00 0.00 31.39 3.56
1894 1995 6.146216 TGTTGGTATGCGTCTTTTATGTTTG 58.854 36.000 0.00 0.00 0.00 2.93
1944 2045 4.402474 TGAAGATCTCGTCAGATAAGGCAA 59.598 41.667 0.00 0.00 39.71 4.52
1951 2052 5.398603 AAGTTGTGAAGATCTCGTCAGAT 57.601 39.130 0.00 0.00 42.59 2.90
1957 2058 6.528423 CAGTACCTAAAGTTGTGAAGATCTCG 59.472 42.308 0.00 0.00 0.00 4.04
1963 2064 6.535508 GCTATCCAGTACCTAAAGTTGTGAAG 59.464 42.308 0.00 0.00 0.00 3.02
1970 2071 4.275810 TGTCGCTATCCAGTACCTAAAGT 58.724 43.478 0.00 0.00 0.00 2.66
1971 2072 4.913335 TGTCGCTATCCAGTACCTAAAG 57.087 45.455 0.00 0.00 0.00 1.85
1994 2095 6.488006 CAGGGAAATAAGACATGACCAATAGG 59.512 42.308 0.00 0.00 42.21 2.57
2005 2106 3.071892 ACCGTGAACAGGGAAATAAGACA 59.928 43.478 18.36 0.00 39.52 3.41
2013 2114 1.071071 CCACTTACCGTGAACAGGGAA 59.929 52.381 18.36 8.64 46.81 3.97
2025 2126 1.202348 GCACAGGAAATGCCACTTACC 59.798 52.381 0.00 0.00 40.02 2.85
2039 2140 5.296780 TCAGTCAAGAAAAGTAAAGCACAGG 59.703 40.000 0.00 0.00 0.00 4.00
2049 2150 3.879892 GCCAGTTCTCAGTCAAGAAAAGT 59.120 43.478 0.00 0.00 37.04 2.66
2050 2151 3.879295 TGCCAGTTCTCAGTCAAGAAAAG 59.121 43.478 0.00 0.00 37.04 2.27
2051 2152 3.884895 TGCCAGTTCTCAGTCAAGAAAA 58.115 40.909 0.00 0.00 37.04 2.29
2054 2155 3.777106 AATGCCAGTTCTCAGTCAAGA 57.223 42.857 0.00 0.00 0.00 3.02
2055 2156 3.190118 GGAAATGCCAGTTCTCAGTCAAG 59.810 47.826 4.76 0.00 36.34 3.02
2056 2157 3.149196 GGAAATGCCAGTTCTCAGTCAA 58.851 45.455 4.76 0.00 36.34 3.18
2057 2158 2.373169 AGGAAATGCCAGTTCTCAGTCA 59.627 45.455 4.76 0.00 40.02 3.41
2058 2159 2.746362 CAGGAAATGCCAGTTCTCAGTC 59.254 50.000 4.76 0.00 40.02 3.51
2059 2160 2.107204 ACAGGAAATGCCAGTTCTCAGT 59.893 45.455 4.76 0.00 40.02 3.41
2060 2161 2.486982 CACAGGAAATGCCAGTTCTCAG 59.513 50.000 4.76 0.00 40.02 3.35
2061 2162 2.507484 CACAGGAAATGCCAGTTCTCA 58.493 47.619 4.76 0.00 40.02 3.27
2062 2163 1.200948 GCACAGGAAATGCCAGTTCTC 59.799 52.381 4.76 0.00 40.02 2.87
2063 2164 1.202976 AGCACAGGAAATGCCAGTTCT 60.203 47.619 4.76 0.00 44.53 3.01
2064 2165 1.251251 AGCACAGGAAATGCCAGTTC 58.749 50.000 0.00 0.00 44.53 3.01
2065 2166 1.708341 AAGCACAGGAAATGCCAGTT 58.292 45.000 0.00 0.00 44.53 3.16
2066 2167 1.708341 AAAGCACAGGAAATGCCAGT 58.292 45.000 0.00 0.00 44.53 4.00
2067 2168 2.821969 AGTAAAGCACAGGAAATGCCAG 59.178 45.455 0.00 0.00 44.53 4.85
2068 2169 2.875296 AGTAAAGCACAGGAAATGCCA 58.125 42.857 0.00 0.00 44.53 4.92
2069 2170 3.942130 AAGTAAAGCACAGGAAATGCC 57.058 42.857 0.00 0.00 44.53 4.40
2070 2171 5.532557 AGAAAAGTAAAGCACAGGAAATGC 58.467 37.500 0.00 0.00 43.74 3.56
2071 2172 7.168135 GTCAAGAAAAGTAAAGCACAGGAAATG 59.832 37.037 0.00 0.00 0.00 2.32
2072 2173 7.068716 AGTCAAGAAAAGTAAAGCACAGGAAAT 59.931 33.333 0.00 0.00 0.00 2.17
2073 2174 6.377146 AGTCAAGAAAAGTAAAGCACAGGAAA 59.623 34.615 0.00 0.00 0.00 3.13
2074 2175 5.885912 AGTCAAGAAAAGTAAAGCACAGGAA 59.114 36.000 0.00 0.00 0.00 3.36
2075 2176 5.296780 CAGTCAAGAAAAGTAAAGCACAGGA 59.703 40.000 0.00 0.00 0.00 3.86
2076 2177 5.296780 TCAGTCAAGAAAAGTAAAGCACAGG 59.703 40.000 0.00 0.00 0.00 4.00
2077 2178 6.258727 TCTCAGTCAAGAAAAGTAAAGCACAG 59.741 38.462 0.00 0.00 0.00 3.66
2078 2179 6.112734 TCTCAGTCAAGAAAAGTAAAGCACA 58.887 36.000 0.00 0.00 0.00 4.57
2079 2180 6.604735 TCTCAGTCAAGAAAAGTAAAGCAC 57.395 37.500 0.00 0.00 0.00 4.40
2080 2181 6.823689 AGTTCTCAGTCAAGAAAAGTAAAGCA 59.176 34.615 0.00 0.00 37.04 3.91
2081 2182 7.128976 CAGTTCTCAGTCAAGAAAAGTAAAGC 58.871 38.462 0.00 0.00 37.04 3.51
2082 2183 7.634522 CCAGTTCTCAGTCAAGAAAAGTAAAG 58.365 38.462 0.00 0.00 37.04 1.85
2083 2184 6.038271 GCCAGTTCTCAGTCAAGAAAAGTAAA 59.962 38.462 0.00 0.00 37.04 2.01
2084 2185 5.527582 GCCAGTTCTCAGTCAAGAAAAGTAA 59.472 40.000 0.00 0.00 37.04 2.24
2085 2186 5.057149 GCCAGTTCTCAGTCAAGAAAAGTA 58.943 41.667 0.00 0.00 37.04 2.24
2086 2187 3.879892 GCCAGTTCTCAGTCAAGAAAAGT 59.120 43.478 0.00 0.00 37.04 2.66
2087 2188 3.879295 TGCCAGTTCTCAGTCAAGAAAAG 59.121 43.478 0.00 0.00 37.04 2.27
2088 2189 3.884895 TGCCAGTTCTCAGTCAAGAAAA 58.115 40.909 0.00 0.00 37.04 2.29
2089 2190 3.558931 TGCCAGTTCTCAGTCAAGAAA 57.441 42.857 0.00 0.00 37.04 2.52
2090 2191 3.777106 ATGCCAGTTCTCAGTCAAGAA 57.223 42.857 0.00 0.00 32.92 2.52
2091 2192 3.777106 AATGCCAGTTCTCAGTCAAGA 57.223 42.857 0.00 0.00 0.00 3.02
2092 2193 3.190118 GGAAATGCCAGTTCTCAGTCAAG 59.810 47.826 4.76 0.00 36.34 3.02
2093 2194 3.149196 GGAAATGCCAGTTCTCAGTCAA 58.851 45.455 4.76 0.00 36.34 3.18
2094 2195 2.373169 AGGAAATGCCAGTTCTCAGTCA 59.627 45.455 4.76 0.00 40.02 3.41
2095 2196 2.746362 CAGGAAATGCCAGTTCTCAGTC 59.254 50.000 4.76 0.00 40.02 3.51
2096 2197 2.107204 ACAGGAAATGCCAGTTCTCAGT 59.893 45.455 4.76 0.00 40.02 3.41
2097 2198 2.486982 CACAGGAAATGCCAGTTCTCAG 59.513 50.000 4.76 0.00 40.02 3.35
2098 2199 2.507484 CACAGGAAATGCCAGTTCTCA 58.493 47.619 4.76 0.00 40.02 3.27
2099 2200 1.200948 GCACAGGAAATGCCAGTTCTC 59.799 52.381 4.76 0.00 40.02 2.87
2100 2201 1.202976 AGCACAGGAAATGCCAGTTCT 60.203 47.619 4.76 0.00 44.53 3.01
2101 2202 1.251251 AGCACAGGAAATGCCAGTTC 58.749 50.000 0.00 0.00 44.53 3.01
2102 2203 1.708341 AAGCACAGGAAATGCCAGTT 58.292 45.000 0.00 0.00 44.53 3.16
2103 2204 1.708341 AAAGCACAGGAAATGCCAGT 58.292 45.000 0.00 0.00 44.53 4.00
2104 2205 2.821969 AGTAAAGCACAGGAAATGCCAG 59.178 45.455 0.00 0.00 44.53 4.85
2105 2206 2.875296 AGTAAAGCACAGGAAATGCCA 58.125 42.857 0.00 0.00 44.53 4.92
2106 2207 3.942130 AAGTAAAGCACAGGAAATGCC 57.058 42.857 0.00 0.00 44.53 4.40
2107 2208 5.532557 AGAAAAGTAAAGCACAGGAAATGC 58.467 37.500 0.00 0.00 43.74 3.56
2108 2209 7.168135 GTCAAGAAAAGTAAAGCACAGGAAATG 59.832 37.037 0.00 0.00 0.00 2.32
2109 2210 7.068716 AGTCAAGAAAAGTAAAGCACAGGAAAT 59.931 33.333 0.00 0.00 0.00 2.17
2110 2211 6.377146 AGTCAAGAAAAGTAAAGCACAGGAAA 59.623 34.615 0.00 0.00 0.00 3.13
2111 2212 5.885912 AGTCAAGAAAAGTAAAGCACAGGAA 59.114 36.000 0.00 0.00 0.00 3.36
2112 2213 5.296780 CAGTCAAGAAAAGTAAAGCACAGGA 59.703 40.000 0.00 0.00 0.00 3.86
2113 2214 5.296780 TCAGTCAAGAAAAGTAAAGCACAGG 59.703 40.000 0.00 0.00 0.00 4.00
2114 2215 6.258727 TCTCAGTCAAGAAAAGTAAAGCACAG 59.741 38.462 0.00 0.00 0.00 3.66
2115 2216 6.112734 TCTCAGTCAAGAAAAGTAAAGCACA 58.887 36.000 0.00 0.00 0.00 4.57
2116 2217 6.604735 TCTCAGTCAAGAAAAGTAAAGCAC 57.395 37.500 0.00 0.00 0.00 4.40
2117 2218 6.823689 AGTTCTCAGTCAAGAAAAGTAAAGCA 59.176 34.615 0.00 0.00 37.04 3.91
2118 2219 7.252965 AGTTCTCAGTCAAGAAAAGTAAAGC 57.747 36.000 0.00 0.00 37.04 3.51
2119 2220 8.491950 GCTAGTTCTCAGTCAAGAAAAGTAAAG 58.508 37.037 0.00 0.00 37.04 1.85
2120 2221 7.985184 TGCTAGTTCTCAGTCAAGAAAAGTAAA 59.015 33.333 0.00 0.00 37.04 2.01
2121 2222 7.497595 TGCTAGTTCTCAGTCAAGAAAAGTAA 58.502 34.615 0.00 0.00 37.04 2.24
2122 2223 7.050970 TGCTAGTTCTCAGTCAAGAAAAGTA 57.949 36.000 0.00 0.00 37.04 2.24
2123 2224 5.918608 TGCTAGTTCTCAGTCAAGAAAAGT 58.081 37.500 0.00 0.00 37.04 2.66
2124 2225 7.432350 AATGCTAGTTCTCAGTCAAGAAAAG 57.568 36.000 0.00 0.00 37.04 2.27
2125 2226 7.041098 GGAAATGCTAGTTCTCAGTCAAGAAAA 60.041 37.037 0.00 0.00 37.04 2.29
2126 2227 6.428159 GGAAATGCTAGTTCTCAGTCAAGAAA 59.572 38.462 0.00 0.00 37.04 2.52
2127 2228 5.934625 GGAAATGCTAGTTCTCAGTCAAGAA 59.065 40.000 0.00 0.00 32.92 2.52
2128 2229 5.247110 AGGAAATGCTAGTTCTCAGTCAAGA 59.753 40.000 0.00 0.00 0.00 3.02
2129 2230 5.350914 CAGGAAATGCTAGTTCTCAGTCAAG 59.649 44.000 0.00 0.00 0.00 3.02
2130 2231 5.221722 ACAGGAAATGCTAGTTCTCAGTCAA 60.222 40.000 0.00 0.00 0.00 3.18
2131 2232 4.284490 ACAGGAAATGCTAGTTCTCAGTCA 59.716 41.667 0.00 0.00 0.00 3.41
2132 2233 4.629200 CACAGGAAATGCTAGTTCTCAGTC 59.371 45.833 0.00 0.00 0.00 3.51
2133 2234 4.573900 CACAGGAAATGCTAGTTCTCAGT 58.426 43.478 0.00 0.00 0.00 3.41
2134 2235 3.373439 GCACAGGAAATGCTAGTTCTCAG 59.627 47.826 0.00 0.00 40.08 3.35
2135 2236 3.338249 GCACAGGAAATGCTAGTTCTCA 58.662 45.455 0.00 0.00 40.08 3.27
2144 2245 5.126396 AGAAAGTAAAGCACAGGAAATGC 57.874 39.130 0.00 0.00 43.74 3.56
2145 2246 6.638468 GTCAAGAAAGTAAAGCACAGGAAATG 59.362 38.462 0.00 0.00 0.00 2.32
2146 2247 6.547510 AGTCAAGAAAGTAAAGCACAGGAAAT 59.452 34.615 0.00 0.00 0.00 2.17
2147 2248 5.885912 AGTCAAGAAAGTAAAGCACAGGAAA 59.114 36.000 0.00 0.00 0.00 3.13
2148 2249 5.296780 CAGTCAAGAAAGTAAAGCACAGGAA 59.703 40.000 0.00 0.00 0.00 3.36
2149 2250 4.816385 CAGTCAAGAAAGTAAAGCACAGGA 59.184 41.667 0.00 0.00 0.00 3.86
2150 2251 4.816385 TCAGTCAAGAAAGTAAAGCACAGG 59.184 41.667 0.00 0.00 0.00 4.00
2151 2252 5.755375 TCTCAGTCAAGAAAGTAAAGCACAG 59.245 40.000 0.00 0.00 0.00 3.66
2152 2253 5.670485 TCTCAGTCAAGAAAGTAAAGCACA 58.330 37.500 0.00 0.00 0.00 4.57
2153 2254 6.258947 AGTTCTCAGTCAAGAAAGTAAAGCAC 59.741 38.462 0.00 0.00 37.04 4.40
2154 2255 6.349300 AGTTCTCAGTCAAGAAAGTAAAGCA 58.651 36.000 0.00 0.00 37.04 3.91
2155 2256 6.852858 AGTTCTCAGTCAAGAAAGTAAAGC 57.147 37.500 0.00 0.00 37.04 3.51
2156 2257 8.425577 TGAAGTTCTCAGTCAAGAAAGTAAAG 57.574 34.615 4.17 0.00 37.04 1.85
2157 2258 8.425577 CTGAAGTTCTCAGTCAAGAAAGTAAA 57.574 34.615 4.17 0.00 45.76 2.01
2175 2276 8.416329 AGTTGTCAATCTTAATTTGCTGAAGTT 58.584 29.630 0.00 0.00 0.00 2.66
2206 2307 7.124298 AGCACAAGACTACCAAATCTGATAGTA 59.876 37.037 0.00 0.00 0.00 1.82
2208 2309 6.257411 CAGCACAAGACTACCAAATCTGATAG 59.743 42.308 0.00 0.00 0.00 2.08
2212 2313 4.318332 TCAGCACAAGACTACCAAATCTG 58.682 43.478 0.00 0.00 0.00 2.90
2216 2317 5.483685 AGTATCAGCACAAGACTACCAAA 57.516 39.130 0.00 0.00 0.00 3.28
2220 2321 5.955488 TGAGAAGTATCAGCACAAGACTAC 58.045 41.667 0.00 0.00 0.00 2.73
2222 2323 5.070770 CTGAGAAGTATCAGCACAAGACT 57.929 43.478 0.00 0.00 40.26 3.24
2233 2334 9.039870 CATAATTGGTGAGAACTGAGAAGTATC 57.960 37.037 0.00 0.00 0.00 2.24
2242 2343 8.993121 GTGGTATATCATAATTGGTGAGAACTG 58.007 37.037 0.00 0.00 0.00 3.16
2243 2344 8.713971 TGTGGTATATCATAATTGGTGAGAACT 58.286 33.333 0.00 0.00 0.00 3.01
2246 2347 9.506018 CATTGTGGTATATCATAATTGGTGAGA 57.494 33.333 5.30 0.00 0.00 3.27
2247 2348 9.288576 ACATTGTGGTATATCATAATTGGTGAG 57.711 33.333 5.30 0.00 0.00 3.51
2254 2355 9.791801 TGCAAGTACATTGTGGTATATCATAAT 57.208 29.630 2.33 2.33 41.29 1.28
2255 2356 9.791801 ATGCAAGTACATTGTGGTATATCATAA 57.208 29.630 0.00 0.00 41.29 1.90
2257 2358 9.791801 TTATGCAAGTACATTGTGGTATATCAT 57.208 29.630 0.00 0.00 41.29 2.45
2258 2359 9.051679 GTTATGCAAGTACATTGTGGTATATCA 57.948 33.333 0.00 0.00 41.29 2.15
2260 2361 9.056005 CAGTTATGCAAGTACATTGTGGTATAT 57.944 33.333 0.00 0.00 41.29 0.86
2261 2362 8.261522 TCAGTTATGCAAGTACATTGTGGTATA 58.738 33.333 0.00 0.00 41.29 1.47
2263 2364 6.468543 TCAGTTATGCAAGTACATTGTGGTA 58.531 36.000 0.00 0.00 41.29 3.25
2264 2365 5.312895 TCAGTTATGCAAGTACATTGTGGT 58.687 37.500 0.00 0.00 41.29 4.16
2265 2366 5.163723 CCTCAGTTATGCAAGTACATTGTGG 60.164 44.000 0.00 0.00 41.29 4.17
2266 2367 5.674569 GCCTCAGTTATGCAAGTACATTGTG 60.675 44.000 0.00 0.00 41.29 3.33
2268 2369 4.201950 GGCCTCAGTTATGCAAGTACATTG 60.202 45.833 0.00 0.00 42.20 2.82
2307 2525 2.030371 TGCTGGAACAAACTGCAATGA 58.970 42.857 1.23 0.00 39.36 2.57
2368 2589 9.716531 CAGGAATATACATAGAATGAGAAAGCA 57.283 33.333 0.00 0.00 0.00 3.91
2403 2624 2.101582 ACTCCTCGCAATAGGCACTTAG 59.898 50.000 0.00 0.00 45.17 2.18
2411 2632 7.378966 TCTATGGAATAAACTCCTCGCAATAG 58.621 38.462 0.00 0.00 36.35 1.73
2460 2681 7.099764 ACACAAATCATCAGTAAGTACAGGAG 58.900 38.462 0.00 0.00 0.00 3.69
2461 2682 7.004555 ACACAAATCATCAGTAAGTACAGGA 57.995 36.000 0.00 0.00 0.00 3.86
2634 2872 7.148137 GGTCGTCCCATATGTATTCAAAAAGTT 60.148 37.037 1.24 0.00 0.00 2.66
2648 2888 0.666913 CTCGTTCGGTCGTCCCATAT 59.333 55.000 0.00 0.00 0.00 1.78
2662 2902 3.446161 TCCCGTCTTTCATGATACTCGTT 59.554 43.478 0.00 0.00 0.00 3.85
2687 2927 9.970553 ATTGGATATGCATAAACATCTCTACAT 57.029 29.630 11.13 0.00 0.00 2.29
2757 2997 2.279741 TGCATTTGTATCACCGCTCTC 58.720 47.619 0.00 0.00 0.00 3.20
2769 3009 5.865552 GCATCAGACAAACTAATGCATTTGT 59.134 36.000 18.75 18.85 46.45 2.83
2882 3290 1.065199 GGAAGTCTCATCCATGTGCCA 60.065 52.381 0.00 0.00 36.92 4.92
2909 3317 3.945285 CCAGACGGTAAATTGTAAGGCAT 59.055 43.478 0.00 0.00 0.00 4.40
2922 3330 6.900285 TGGGGACAATAAGACCAGACGGTA 62.900 50.000 0.00 0.00 42.13 4.02
2925 3333 1.553248 TGGGGACAATAAGACCAGACG 59.447 52.381 0.00 0.00 37.44 4.18
2931 3339 2.092323 GCAAGGTGGGGACAATAAGAC 58.908 52.381 0.00 0.00 46.06 3.01
2979 3387 5.530915 CCATTCCTAAGAAAGACACACACAA 59.469 40.000 0.00 0.00 35.09 3.33
2980 3388 5.063204 CCATTCCTAAGAAAGACACACACA 58.937 41.667 0.00 0.00 35.09 3.72
2981 3389 4.083271 GCCATTCCTAAGAAAGACACACAC 60.083 45.833 0.00 0.00 35.09 3.82
2982 3390 4.072131 GCCATTCCTAAGAAAGACACACA 58.928 43.478 0.00 0.00 35.09 3.72
2983 3391 3.440522 GGCCATTCCTAAGAAAGACACAC 59.559 47.826 0.00 0.00 35.09 3.82
2984 3392 3.073798 TGGCCATTCCTAAGAAAGACACA 59.926 43.478 0.00 0.00 35.09 3.72
2985 3393 3.686016 TGGCCATTCCTAAGAAAGACAC 58.314 45.455 0.00 0.00 35.09 3.67
2986 3394 4.380843 TTGGCCATTCCTAAGAAAGACA 57.619 40.909 6.09 0.00 35.09 3.41
2987 3395 6.547510 ACATATTGGCCATTCCTAAGAAAGAC 59.452 38.462 6.09 0.00 35.09 3.01
3060 3468 9.457446 CTCTTGTGAGCAACTATGAGGATCAGT 62.457 44.444 0.00 0.00 40.45 3.41
3092 3500 2.404215 GCTAGTCAGCTTTGACACGAA 58.596 47.619 8.62 0.00 44.93 3.85
3313 3721 8.844244 GGCAATCAGTCTCATAACATAAGAAAT 58.156 33.333 0.00 0.00 0.00 2.17
3354 3762 7.086376 CACAAACAAAAACCCTCTCATCTATG 58.914 38.462 0.00 0.00 0.00 2.23
3355 3763 6.294731 GCACAAACAAAAACCCTCTCATCTAT 60.295 38.462 0.00 0.00 0.00 1.98
3356 3764 5.009610 GCACAAACAAAAACCCTCTCATCTA 59.990 40.000 0.00 0.00 0.00 1.98
3479 3888 2.912956 AGCCAGGGATGAGACAAGTTTA 59.087 45.455 0.00 0.00 0.00 2.01
3588 3997 3.747976 GTTGTGGTGGCGCATCCC 61.748 66.667 10.83 5.94 0.00 3.85
3705 4114 3.458163 CCTAGCCGGGCTTCGTCA 61.458 66.667 29.02 7.66 40.44 4.35
3876 4285 0.179009 ATGGGTTGCAGATGGGATCG 60.179 55.000 0.00 0.00 0.00 3.69
3901 4310 5.688807 ACAGCAGCCTTAATCATGTAATCT 58.311 37.500 0.00 0.00 0.00 2.40
3926 4337 1.558756 CAATTGCTCTGGGAGAGGAGT 59.441 52.381 2.88 0.00 43.59 3.85
4064 4475 1.134128 TGCTTCCATATGCACATCGGT 60.134 47.619 0.00 0.00 33.94 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.