Multiple sequence alignment - TraesCS4D01G318500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G318500 chr4D 100.000 6430 0 0 1 6430 482941717 482948146 0.000000e+00 11875.0
1 TraesCS4D01G318500 chr4D 84.171 537 63 16 70 590 463921263 463920733 9.620000e-138 501.0
2 TraesCS4D01G318500 chr4D 94.872 39 2 0 6236 6274 13602266 13602228 1.940000e-05 62.1
3 TraesCS4D01G318500 chr4B 93.748 5342 193 60 800 6093 612842494 612847742 0.000000e+00 7884.0
4 TraesCS4D01G318500 chr4B 90.000 100 4 4 617 711 612842317 612842415 2.430000e-24 124.0
5 TraesCS4D01G318500 chr5A 94.265 2511 106 20 3641 6128 659714146 659711651 0.000000e+00 3805.0
6 TraesCS4D01G318500 chr5A 95.444 1690 55 13 1957 3627 659715925 659714239 0.000000e+00 2675.0
7 TraesCS4D01G318500 chr5A 89.306 720 53 16 1253 1958 659716708 659715999 0.000000e+00 881.0
8 TraesCS4D01G318500 chr5A 84.132 605 51 24 602 1192 659717296 659716723 1.580000e-150 544.0
9 TraesCS4D01G318500 chr5A 91.071 168 7 4 6261 6426 659711417 659711256 3.020000e-53 220.0
10 TraesCS4D01G318500 chr5A 81.818 165 25 3 6116 6275 567110803 567110967 4.040000e-27 134.0
11 TraesCS4D01G318500 chr5A 76.364 165 28 6 6116 6273 694970904 694970744 1.920000e-10 78.7
12 TraesCS4D01G318500 chr5A 93.478 46 3 0 6229 6274 694970859 694970904 1.160000e-07 69.4
13 TraesCS4D01G318500 chr5A 91.489 47 4 0 6116 6162 74580994 74581040 1.500000e-06 65.8
14 TraesCS4D01G318500 chr7D 83.893 596 57 19 34 596 462335971 462335382 3.410000e-147 532.0
15 TraesCS4D01G318500 chr7D 89.305 374 35 5 219 588 112895121 112894749 1.260000e-126 464.0
16 TraesCS4D01G318500 chr7D 87.500 216 18 6 1 212 353912450 353912240 2.320000e-59 241.0
17 TraesCS4D01G318500 chr7D 86.486 222 19 5 1 216 112879328 112879112 3.880000e-57 233.0
18 TraesCS4D01G318500 chr2D 90.736 367 31 3 226 591 54663012 54662648 2.690000e-133 486.0
19 TraesCS4D01G318500 chr2D 89.474 380 32 7 216 591 143311579 143311954 2.100000e-129 473.0
20 TraesCS4D01G318500 chr5D 89.062 384 34 8 216 595 564947199 564946820 2.710000e-128 470.0
21 TraesCS4D01G318500 chr5D 80.723 166 24 7 6116 6274 575283 575447 8.750000e-24 122.0
22 TraesCS4D01G318500 chr5D 95.122 41 2 0 6235 6275 503190686 503190726 1.500000e-06 65.8
23 TraesCS4D01G318500 chr6D 89.702 369 32 6 226 591 402412424 402412789 3.510000e-127 466.0
24 TraesCS4D01G318500 chr3B 89.488 371 35 4 226 593 146297140 146296771 3.510000e-127 466.0
25 TraesCS4D01G318500 chr3B 89.646 367 34 4 226 590 197773293 197773657 1.260000e-126 464.0
26 TraesCS4D01G318500 chr3B 78.322 143 24 6 6115 6251 798559670 798559529 1.150000e-12 86.1
27 TraesCS4D01G318500 chr2A 88.318 214 19 4 1 212 14936770 14936979 1.070000e-62 252.0
28 TraesCS4D01G318500 chr2A 87.440 207 16 8 1 207 175466401 175466597 5.010000e-56 230.0
29 TraesCS4D01G318500 chr2A 81.928 166 23 7 6115 6274 157541745 157541909 4.040000e-27 134.0
30 TraesCS4D01G318500 chr2A 81.707 164 25 4 6116 6274 749792765 749792928 1.450000e-26 132.0
31 TraesCS4D01G318500 chr7A 87.864 206 20 5 10 212 705485280 705485483 3.000000e-58 237.0
32 TraesCS4D01G318500 chr7A 81.098 164 25 3 6116 6274 704268689 704268851 6.770000e-25 126.0
33 TraesCS4D01G318500 chr4A 87.981 208 16 5 5 212 619132864 619133062 3.000000e-58 237.0
34 TraesCS4D01G318500 chr4A 79.231 130 22 4 6116 6240 646086032 646086161 1.150000e-12 86.1
35 TraesCS4D01G318500 chr3D 86.792 212 22 3 1 210 7069636 7069843 1.390000e-56 231.0
36 TraesCS4D01G318500 chr5B 86.792 212 21 4 5 211 281435493 281435284 5.010000e-56 230.0
37 TraesCS4D01G318500 chr5B 87.143 210 18 6 5 210 324567620 324567824 5.010000e-56 230.0
38 TraesCS4D01G318500 chr6A 81.065 169 27 3 6111 6274 5939072 5939240 5.230000e-26 130.0
39 TraesCS4D01G318500 chr1D 80.606 165 22 5 6116 6274 289575100 289575260 1.130000e-22 119.0
40 TraesCS4D01G318500 chr2B 79.641 167 25 6 6115 6274 540729103 540729267 1.900000e-20 111.0
41 TraesCS4D01G318500 chrUn 79.518 166 24 7 6116 6274 85304296 85304458 6.820000e-20 110.0
42 TraesCS4D01G318500 chr1B 86.667 75 8 2 6200 6274 345303733 345303805 1.490000e-11 82.4
43 TraesCS4D01G318500 chr1A 83.333 84 12 1 6192 6275 471461021 471460940 6.910000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G318500 chr4D 482941717 482948146 6429 False 11875 11875 100.0000 1 6430 1 chr4D.!!$F1 6429
1 TraesCS4D01G318500 chr4D 463920733 463921263 530 True 501 501 84.1710 70 590 1 chr4D.!!$R2 520
2 TraesCS4D01G318500 chr4B 612842317 612847742 5425 False 4004 7884 91.8740 617 6093 2 chr4B.!!$F1 5476
3 TraesCS4D01G318500 chr5A 659711256 659717296 6040 True 1625 3805 90.8436 602 6426 5 chr5A.!!$R2 5824
4 TraesCS4D01G318500 chr7D 462335382 462335971 589 True 532 532 83.8930 34 596 1 chr7D.!!$R4 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
745 816 0.039074 AAAGGAGGCTATCGATCGCG 60.039 55.000 11.09 0.0 39.35 5.87 F
975 1048 0.529337 CAAGTCGCCGAGATCAGCAT 60.529 55.000 0.00 0.0 0.00 3.79 F
2083 2289 1.061711 GCGCAGAGTCATTGCAGTTAG 59.938 52.381 0.30 0.0 41.59 2.34 F
3133 3339 0.555769 TGGCAAGTCTTTTGGAGGGT 59.444 50.000 0.00 0.0 0.00 4.34 F
3148 3354 2.039879 GGAGGGTACACAAGTTGGTGAT 59.960 50.000 7.96 0.0 41.32 3.06 F
3969 4257 2.046285 GGAAGGTGGCATGGAACGG 61.046 63.158 0.00 0.0 0.00 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2498 2704 0.108207 TTGCCCCAAAAAGTGCCATG 59.892 50.000 0.00 0.00 0.00 3.66 R
2792 2998 3.568007 TCCAAAACACCATGCAGTAAGAC 59.432 43.478 0.00 0.00 0.00 3.01 R
4014 4302 2.088104 TCCCGTCTATTGGAGCATCT 57.912 50.000 0.00 0.00 33.73 2.90 R
4906 5201 0.461548 TATCCTTCTGCACGAGCCAG 59.538 55.000 1.39 0.25 41.13 4.85 R
4909 5204 2.359531 AGTAGTATCCTTCTGCACGAGC 59.640 50.000 0.00 0.00 42.57 5.03 R
5960 6281 0.103937 GACGAGCAGGGATCTCCAAG 59.896 60.000 0.00 0.00 38.24 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 0.593128 CAAGAGAGGCACGGTTTTGG 59.407 55.000 0.00 0.00 0.00 3.28
67 68 1.076632 AGGCACGGTTTTGGTTCCA 60.077 52.632 0.00 0.00 0.00 3.53
68 69 0.469144 AGGCACGGTTTTGGTTCCAT 60.469 50.000 0.00 0.00 0.00 3.41
191 195 1.153647 CGCGAGAGGCATGGTTGTA 60.154 57.895 0.00 0.00 43.84 2.41
321 354 1.167781 TGCTCCCGGTTCGGTTTTTC 61.168 55.000 0.00 0.00 46.80 2.29
392 427 6.325028 TGGGATCTAGTTTTGAAGATCTCGAT 59.675 38.462 11.05 0.00 40.21 3.59
394 429 7.429633 GGATCTAGTTTTGAAGATCTCGATGA 58.570 38.462 11.05 0.00 37.77 2.92
395 430 7.923344 GGATCTAGTTTTGAAGATCTCGATGAA 59.077 37.037 11.05 0.00 37.77 2.57
398 433 8.523658 TCTAGTTTTGAAGATCTCGATGAAAGA 58.476 33.333 0.00 0.00 0.00 2.52
438 473 2.452813 CGAGATTTGGACGCACGGG 61.453 63.158 0.00 0.00 0.00 5.28
493 532 6.531021 TCTACGAAAAAGGGAAAACTCTCAT 58.469 36.000 0.00 0.00 0.00 2.90
507 546 2.224042 ACTCTCATGTTGCGACAAGTGA 60.224 45.455 11.67 11.98 39.66 3.41
509 548 0.858583 TCATGTTGCGACAAGTGACG 59.141 50.000 11.67 0.00 39.66 4.35
529 568 3.498834 CATGCAGCGCGCCACTTA 61.499 61.111 30.33 10.71 41.33 2.24
530 569 2.514592 ATGCAGCGCGCCACTTAT 60.515 55.556 30.33 12.71 41.33 1.73
531 570 2.537560 ATGCAGCGCGCCACTTATC 61.538 57.895 30.33 9.55 41.33 1.75
532 571 4.285149 GCAGCGCGCCACTTATCG 62.285 66.667 30.33 7.23 32.94 2.92
533 572 4.285149 CAGCGCGCCACTTATCGC 62.285 66.667 30.33 0.00 46.98 4.58
538 577 4.201951 CGCCACTTATCGCAACCT 57.798 55.556 0.00 0.00 0.00 3.50
539 578 1.715585 CGCCACTTATCGCAACCTG 59.284 57.895 0.00 0.00 0.00 4.00
540 579 0.739462 CGCCACTTATCGCAACCTGA 60.739 55.000 0.00 0.00 0.00 3.86
541 580 1.009829 GCCACTTATCGCAACCTGAG 58.990 55.000 0.00 0.00 0.00 3.35
542 581 1.405526 GCCACTTATCGCAACCTGAGA 60.406 52.381 0.00 0.00 0.00 3.27
543 582 2.935238 GCCACTTATCGCAACCTGAGAA 60.935 50.000 0.00 0.00 28.16 2.87
544 583 3.334691 CCACTTATCGCAACCTGAGAAA 58.665 45.455 0.00 0.00 28.16 2.52
545 584 3.372206 CCACTTATCGCAACCTGAGAAAG 59.628 47.826 0.00 0.00 28.16 2.62
546 585 3.997021 CACTTATCGCAACCTGAGAAAGT 59.003 43.478 0.00 0.00 32.62 2.66
547 586 3.997021 ACTTATCGCAACCTGAGAAAGTG 59.003 43.478 0.00 0.00 31.93 3.16
548 587 1.813513 ATCGCAACCTGAGAAAGTGG 58.186 50.000 0.00 0.00 28.16 4.00
549 588 0.250295 TCGCAACCTGAGAAAGTGGG 60.250 55.000 0.00 0.00 0.00 4.61
550 589 0.250295 CGCAACCTGAGAAAGTGGGA 60.250 55.000 0.00 0.00 0.00 4.37
551 590 1.528129 GCAACCTGAGAAAGTGGGAG 58.472 55.000 0.00 0.00 0.00 4.30
552 591 1.202818 GCAACCTGAGAAAGTGGGAGT 60.203 52.381 0.00 0.00 0.00 3.85
553 592 2.498167 CAACCTGAGAAAGTGGGAGTG 58.502 52.381 0.00 0.00 0.00 3.51
554 593 2.103153 ACCTGAGAAAGTGGGAGTGA 57.897 50.000 0.00 0.00 0.00 3.41
555 594 2.625639 ACCTGAGAAAGTGGGAGTGAT 58.374 47.619 0.00 0.00 0.00 3.06
556 595 2.569404 ACCTGAGAAAGTGGGAGTGATC 59.431 50.000 0.00 0.00 0.00 2.92
557 596 2.836981 CCTGAGAAAGTGGGAGTGATCT 59.163 50.000 0.00 0.00 0.00 2.75
558 597 3.262915 CCTGAGAAAGTGGGAGTGATCTT 59.737 47.826 0.00 0.00 0.00 2.40
559 598 4.263243 CCTGAGAAAGTGGGAGTGATCTTT 60.263 45.833 0.00 0.00 33.64 2.52
560 599 4.645535 TGAGAAAGTGGGAGTGATCTTTG 58.354 43.478 0.00 0.00 31.56 2.77
561 600 3.416156 AGAAAGTGGGAGTGATCTTTGC 58.584 45.455 0.00 0.00 31.56 3.68
562 601 2.957402 AAGTGGGAGTGATCTTTGCA 57.043 45.000 0.00 0.00 0.00 4.08
563 602 2.957402 AGTGGGAGTGATCTTTGCAA 57.043 45.000 0.00 0.00 0.00 4.08
564 603 2.508526 AGTGGGAGTGATCTTTGCAAC 58.491 47.619 0.00 0.00 0.00 4.17
565 604 1.197721 GTGGGAGTGATCTTTGCAACG 59.802 52.381 0.00 0.00 0.00 4.10
566 605 1.071542 TGGGAGTGATCTTTGCAACGA 59.928 47.619 8.20 8.20 0.00 3.85
567 606 1.734465 GGGAGTGATCTTTGCAACGAG 59.266 52.381 11.57 1.70 0.00 4.18
568 607 2.417719 GGAGTGATCTTTGCAACGAGT 58.582 47.619 11.57 0.34 0.00 4.18
569 608 3.585862 GGAGTGATCTTTGCAACGAGTA 58.414 45.455 11.57 0.27 0.00 2.59
570 609 3.368236 GGAGTGATCTTTGCAACGAGTAC 59.632 47.826 11.57 11.75 0.00 2.73
571 610 4.238514 GAGTGATCTTTGCAACGAGTACT 58.761 43.478 18.57 18.57 0.00 2.73
572 611 4.238514 AGTGATCTTTGCAACGAGTACTC 58.761 43.478 13.18 13.18 0.00 2.59
573 612 3.368236 GTGATCTTTGCAACGAGTACTCC 59.632 47.826 17.23 3.69 0.00 3.85
574 613 3.258372 TGATCTTTGCAACGAGTACTCCT 59.742 43.478 17.23 2.73 0.00 3.69
575 614 3.746045 TCTTTGCAACGAGTACTCCTT 57.254 42.857 17.23 9.18 0.00 3.36
576 615 4.859304 TCTTTGCAACGAGTACTCCTTA 57.141 40.909 17.23 0.00 0.00 2.69
577 616 5.204409 TCTTTGCAACGAGTACTCCTTAA 57.796 39.130 17.23 2.08 0.00 1.85
578 617 4.986659 TCTTTGCAACGAGTACTCCTTAAC 59.013 41.667 17.23 8.20 0.00 2.01
579 618 4.595762 TTGCAACGAGTACTCCTTAACT 57.404 40.909 17.23 0.00 0.00 2.24
580 619 5.710513 TTGCAACGAGTACTCCTTAACTA 57.289 39.130 17.23 2.91 0.00 2.24
581 620 5.306532 TGCAACGAGTACTCCTTAACTAG 57.693 43.478 17.23 3.13 0.00 2.57
582 621 4.763793 TGCAACGAGTACTCCTTAACTAGT 59.236 41.667 17.23 3.77 33.68 2.57
583 622 5.094134 GCAACGAGTACTCCTTAACTAGTG 58.906 45.833 17.23 1.71 32.78 2.74
584 623 5.106396 GCAACGAGTACTCCTTAACTAGTGA 60.106 44.000 17.23 0.00 32.78 3.41
585 624 6.404513 GCAACGAGTACTCCTTAACTAGTGAT 60.405 42.308 17.23 0.00 32.78 3.06
586 625 7.536855 CAACGAGTACTCCTTAACTAGTGATT 58.463 38.462 17.23 0.00 32.78 2.57
587 626 7.700022 ACGAGTACTCCTTAACTAGTGATTT 57.300 36.000 17.23 0.00 31.48 2.17
588 627 7.760437 ACGAGTACTCCTTAACTAGTGATTTC 58.240 38.462 17.23 0.00 31.48 2.17
589 628 6.906143 CGAGTACTCCTTAACTAGTGATTTCG 59.094 42.308 17.23 0.00 0.00 3.46
590 629 7.201591 CGAGTACTCCTTAACTAGTGATTTCGA 60.202 40.741 17.23 0.00 0.00 3.71
591 630 7.760437 AGTACTCCTTAACTAGTGATTTCGAC 58.240 38.462 0.00 0.00 0.00 4.20
592 631 6.585695 ACTCCTTAACTAGTGATTTCGACA 57.414 37.500 0.00 0.00 0.00 4.35
593 632 6.622549 ACTCCTTAACTAGTGATTTCGACAG 58.377 40.000 0.00 0.00 0.00 3.51
594 633 6.433404 ACTCCTTAACTAGTGATTTCGACAGA 59.567 38.462 0.00 0.00 0.00 3.41
595 634 7.122948 ACTCCTTAACTAGTGATTTCGACAGAT 59.877 37.037 0.00 0.00 0.00 2.90
596 635 7.258441 TCCTTAACTAGTGATTTCGACAGATG 58.742 38.462 0.00 0.00 0.00 2.90
597 636 6.477033 CCTTAACTAGTGATTTCGACAGATGG 59.523 42.308 0.00 0.00 0.00 3.51
598 637 3.786635 ACTAGTGATTTCGACAGATGGC 58.213 45.455 0.00 0.00 0.00 4.40
599 638 2.768253 AGTGATTTCGACAGATGGCA 57.232 45.000 0.00 0.00 0.00 4.92
600 639 2.350522 AGTGATTTCGACAGATGGCAC 58.649 47.619 0.00 0.00 0.00 5.01
688 729 3.521796 GCAGAATGGGCCGGCTTC 61.522 66.667 28.56 21.93 35.86 3.86
725 796 3.495670 TTGTTTGGTTGGAACAGAACG 57.504 42.857 0.00 0.00 42.39 3.95
744 815 1.704070 GAAAGGAGGCTATCGATCGC 58.296 55.000 13.21 13.21 0.00 4.58
745 816 0.039074 AAAGGAGGCTATCGATCGCG 60.039 55.000 11.09 0.00 39.35 5.87
746 817 2.479412 AAGGAGGCTATCGATCGCGC 62.479 60.000 11.09 12.39 37.46 6.86
747 818 2.563942 GAGGCTATCGATCGCGCT 59.436 61.111 11.09 12.79 37.46 5.92
748 819 1.081108 GAGGCTATCGATCGCGCTT 60.081 57.895 11.09 9.14 37.46 4.68
749 820 1.068287 GAGGCTATCGATCGCGCTTC 61.068 60.000 11.09 14.10 37.46 3.86
750 821 2.089349 GGCTATCGATCGCGCTTCC 61.089 63.158 11.09 3.94 37.46 3.46
753 824 0.730834 CTATCGATCGCGCTTCCTGG 60.731 60.000 11.09 0.00 37.46 4.45
755 826 1.452953 ATCGATCGCGCTTCCTGGTA 61.453 55.000 11.09 0.00 37.46 3.25
757 828 1.734137 GATCGCGCTTCCTGGTAGA 59.266 57.895 5.56 0.00 0.00 2.59
764 835 2.737039 GCGCTTCCTGGTAGAAGAGAAG 60.737 54.545 0.00 0.00 45.08 2.85
770 841 5.213868 TCCTGGTAGAAGAGAAGGAATCT 57.786 43.478 0.00 0.00 42.61 2.40
773 844 5.068987 CCTGGTAGAAGAGAAGGAATCTGAG 59.931 48.000 0.00 0.00 38.96 3.35
779 850 3.111484 AGAGAAGGAATCTGAGGGGAAC 58.889 50.000 0.00 0.00 38.96 3.62
780 851 2.840651 GAGAAGGAATCTGAGGGGAACA 59.159 50.000 0.00 0.00 38.96 3.18
781 852 3.260205 AGAAGGAATCTGAGGGGAACAA 58.740 45.455 0.00 0.00 36.88 2.83
782 853 3.854994 AGAAGGAATCTGAGGGGAACAAT 59.145 43.478 0.00 0.00 36.88 2.71
783 854 3.941704 AGGAATCTGAGGGGAACAATC 57.058 47.619 0.00 0.00 0.00 2.67
784 855 2.511637 AGGAATCTGAGGGGAACAATCC 59.488 50.000 0.00 0.00 45.77 3.01
908 979 4.022589 CCCAACGCGAATATAGACTCCTAA 60.023 45.833 15.93 0.00 0.00 2.69
909 980 5.154932 CCAACGCGAATATAGACTCCTAAG 58.845 45.833 15.93 0.00 0.00 2.18
910 981 5.154932 CAACGCGAATATAGACTCCTAAGG 58.845 45.833 15.93 0.00 0.00 2.69
911 982 4.649692 ACGCGAATATAGACTCCTAAGGA 58.350 43.478 15.93 0.00 0.00 3.36
912 983 5.254901 ACGCGAATATAGACTCCTAAGGAT 58.745 41.667 15.93 0.00 0.00 3.24
914 985 6.315891 ACGCGAATATAGACTCCTAAGGATAC 59.684 42.308 15.93 0.00 0.00 2.24
915 986 6.509837 CGCGAATATAGACTCCTAAGGATACG 60.510 46.154 0.00 0.00 46.39 3.06
916 987 6.315891 GCGAATATAGACTCCTAAGGATACGT 59.684 42.308 0.00 0.00 46.39 3.57
917 988 7.493971 GCGAATATAGACTCCTAAGGATACGTA 59.506 40.741 0.00 0.00 46.39 3.57
919 990 9.889128 GAATATAGACTCCTAAGGATACGTACT 57.111 37.037 0.00 0.00 46.39 2.73
932 1005 4.202030 GGATACGTACTCTGGAGACCAAAG 60.202 50.000 0.00 0.00 30.80 2.77
975 1048 0.529337 CAAGTCGCCGAGATCAGCAT 60.529 55.000 0.00 0.00 0.00 3.79
1045 1128 2.416162 CGGGTGAGCACTTCTTCTCTAC 60.416 54.545 0.16 0.00 0.00 2.59
1053 1136 3.028130 CACTTCTTCTCTACCCCTCTCC 58.972 54.545 0.00 0.00 0.00 3.71
1054 1137 2.930405 ACTTCTTCTCTACCCCTCTCCT 59.070 50.000 0.00 0.00 0.00 3.69
1084 1168 1.219664 CATGCAATGCAACCCCCTG 59.780 57.895 13.45 0.11 43.62 4.45
1142 1226 2.193536 GCTGGGTTTTGGCGTCTGT 61.194 57.895 0.00 0.00 0.00 3.41
1150 1234 1.733402 TTTGGCGTCTGTGCTTTGGG 61.733 55.000 0.00 0.00 34.52 4.12
1151 1235 2.594592 GGCGTCTGTGCTTTGGGT 60.595 61.111 0.00 0.00 34.52 4.51
1152 1236 2.617274 GGCGTCTGTGCTTTGGGTC 61.617 63.158 0.00 0.00 34.52 4.46
1153 1237 1.598130 GCGTCTGTGCTTTGGGTCT 60.598 57.895 0.00 0.00 0.00 3.85
1154 1238 1.845809 GCGTCTGTGCTTTGGGTCTG 61.846 60.000 0.00 0.00 0.00 3.51
1208 1295 4.297510 CTCTGGTCTCGATGCTAAGATTG 58.702 47.826 0.00 0.00 0.00 2.67
1260 1348 7.624360 TTAAATCATATGACGGCTCTTTGTT 57.376 32.000 7.78 0.00 0.00 2.83
1275 1363 6.392354 GCTCTTTGTTCCATCATCAAATCAA 58.608 36.000 0.00 0.00 32.04 2.57
1280 1368 8.592529 TTTGTTCCATCATCAAATCAATAGGA 57.407 30.769 0.00 0.00 0.00 2.94
1351 1439 3.409804 TTTCTCTCCCCGGTACCTAAT 57.590 47.619 10.90 0.00 0.00 1.73
1353 1441 4.541250 TTCTCTCCCCGGTACCTAATTA 57.459 45.455 10.90 0.00 0.00 1.40
1356 1444 3.308401 TCTCCCCGGTACCTAATTAACC 58.692 50.000 10.90 0.00 0.00 2.85
1420 1510 5.277345 GGATTCGACCATGGAAGATTTAACG 60.277 44.000 21.47 9.25 0.00 3.18
1423 1513 2.676342 GACCATGGAAGATTTAACGCGT 59.324 45.455 21.47 5.58 0.00 6.01
1492 1582 2.818132 GGCTCCGGATCTGGACTG 59.182 66.667 19.95 12.08 33.48 3.51
1494 1584 2.725312 GCTCCGGATCTGGACTGCA 61.725 63.158 23.52 4.61 33.48 4.41
1531 1625 4.272504 TGAAAGAAAACGATCGACTTGCTT 59.727 37.500 24.34 19.75 0.00 3.91
1540 1634 2.031258 TCGACTTGCTTGTGGTTTCA 57.969 45.000 0.00 0.00 0.00 2.69
1541 1635 2.360844 TCGACTTGCTTGTGGTTTCAA 58.639 42.857 0.00 0.00 0.00 2.69
1542 1636 2.948979 TCGACTTGCTTGTGGTTTCAAT 59.051 40.909 0.00 0.00 0.00 2.57
1543 1637 3.044986 CGACTTGCTTGTGGTTTCAATG 58.955 45.455 0.00 0.00 0.00 2.82
1544 1638 3.383761 GACTTGCTTGTGGTTTCAATGG 58.616 45.455 0.00 0.00 0.00 3.16
1545 1639 2.137523 CTTGCTTGTGGTTTCAATGGC 58.862 47.619 0.00 0.00 0.00 4.40
1576 1680 3.471680 GGCCAGCTTTAAGATCGATTCT 58.528 45.455 0.00 0.00 35.70 2.40
1577 1681 4.632153 GGCCAGCTTTAAGATCGATTCTA 58.368 43.478 0.00 0.00 33.05 2.10
1578 1682 4.449405 GGCCAGCTTTAAGATCGATTCTAC 59.551 45.833 0.00 0.00 33.05 2.59
1579 1683 5.293560 GCCAGCTTTAAGATCGATTCTACT 58.706 41.667 0.00 0.00 33.05 2.57
1580 1684 6.448006 GCCAGCTTTAAGATCGATTCTACTA 58.552 40.000 0.00 0.00 33.05 1.82
1581 1685 6.584563 GCCAGCTTTAAGATCGATTCTACTAG 59.415 42.308 0.00 0.00 33.05 2.57
1614 1718 6.748333 TGGATGATGACTTCTTTTCATGTC 57.252 37.500 0.00 0.00 33.70 3.06
1615 1719 6.479006 TGGATGATGACTTCTTTTCATGTCT 58.521 36.000 0.00 0.00 33.70 3.41
1616 1720 6.944290 TGGATGATGACTTCTTTTCATGTCTT 59.056 34.615 0.00 0.00 33.70 3.01
1617 1721 7.120285 TGGATGATGACTTCTTTTCATGTCTTC 59.880 37.037 0.00 0.00 33.70 2.87
1859 1972 4.861196 TGAGATCTAGCTAGTTGACAGGT 58.139 43.478 20.10 0.00 0.00 4.00
1860 1973 5.265191 TGAGATCTAGCTAGTTGACAGGTT 58.735 41.667 20.10 0.00 0.00 3.50
1861 1974 5.717178 TGAGATCTAGCTAGTTGACAGGTTT 59.283 40.000 20.10 0.00 0.00 3.27
1862 1975 6.211584 TGAGATCTAGCTAGTTGACAGGTTTT 59.788 38.462 20.10 0.00 0.00 2.43
1863 1976 7.010339 AGATCTAGCTAGTTGACAGGTTTTT 57.990 36.000 20.10 0.00 0.00 1.94
1864 1977 6.876257 AGATCTAGCTAGTTGACAGGTTTTTG 59.124 38.462 20.10 0.00 0.00 2.44
1865 1978 5.925509 TCTAGCTAGTTGACAGGTTTTTGT 58.074 37.500 20.10 0.00 0.00 2.83
1866 1979 6.354130 TCTAGCTAGTTGACAGGTTTTTGTT 58.646 36.000 20.10 0.00 0.00 2.83
1868 1981 7.988599 TCTAGCTAGTTGACAGGTTTTTGTTAA 59.011 33.333 20.10 0.00 0.00 2.01
1943 2060 2.225491 GCCAAGCGACATCACAACTTAA 59.775 45.455 0.00 0.00 0.00 1.85
1944 2061 3.119849 GCCAAGCGACATCACAACTTAAT 60.120 43.478 0.00 0.00 0.00 1.40
1945 2062 4.406069 CCAAGCGACATCACAACTTAATG 58.594 43.478 0.00 0.00 0.00 1.90
1946 2063 3.747099 AGCGACATCACAACTTAATGC 57.253 42.857 0.00 0.00 0.00 3.56
1950 2068 4.679197 GCGACATCACAACTTAATGCAAAA 59.321 37.500 0.00 0.00 0.00 2.44
1982 2173 4.816392 AGCTTCGTGTATGTGTGTCAATA 58.184 39.130 0.00 0.00 0.00 1.90
1983 2174 5.419542 AGCTTCGTGTATGTGTGTCAATAT 58.580 37.500 0.00 0.00 0.00 1.28
1985 2176 6.371548 AGCTTCGTGTATGTGTGTCAATATTT 59.628 34.615 0.00 0.00 0.00 1.40
1987 2178 7.537306 GCTTCGTGTATGTGTGTCAATATTTTT 59.463 33.333 0.00 0.00 0.00 1.94
2035 2238 2.083774 CATCACGTACAGGTTGCCAAT 58.916 47.619 0.00 0.00 0.00 3.16
2050 2253 1.173043 CCAATTCTAGCACCGCCAAA 58.827 50.000 0.00 0.00 0.00 3.28
2083 2289 1.061711 GCGCAGAGTCATTGCAGTTAG 59.938 52.381 0.30 0.00 41.59 2.34
2133 2339 5.733226 TTCTATGCACGGATGTAAATGTG 57.267 39.130 0.00 0.00 35.48 3.21
2269 2475 8.409371 CCTGGCTTCTAATTATTTTCTTCTTCC 58.591 37.037 0.00 0.00 0.00 3.46
2284 2490 8.675705 TTTCTTCTTCCGATTATTATGCATGA 57.324 30.769 10.16 0.00 0.00 3.07
2293 2499 9.366216 TCCGATTATTATGCATGACTAATACAC 57.634 33.333 10.16 1.92 0.00 2.90
2358 2564 7.106439 TCATTGTGCTTTTTCCTAGTTTGAA 57.894 32.000 0.00 0.00 0.00 2.69
2370 2576 8.671384 TTTCCTAGTTTGAATTTTCTTCGAGA 57.329 30.769 0.00 0.00 0.00 4.04
2373 2579 5.948992 AGTTTGAATTTTCTTCGAGAGGG 57.051 39.130 0.00 0.00 0.00 4.30
2473 2679 7.659390 GGATGAGTTTAAACTAGATAGCATGCT 59.341 37.037 25.99 25.99 39.88 3.79
2498 2704 3.181434 TGATTGAGGGGTGTATTATGGCC 60.181 47.826 0.00 0.00 0.00 5.36
2610 2816 3.243068 GGTGTTGTCCTTTGTTAGTGCAG 60.243 47.826 0.00 0.00 0.00 4.41
2678 2884 3.748568 CGAGGCTTATTCAGGGATTTAGC 59.251 47.826 0.00 0.00 0.00 3.09
2792 2998 4.821805 AGTGGTTCAGTTGGTATGTTCTTG 59.178 41.667 0.00 0.00 0.00 3.02
3133 3339 0.555769 TGGCAAGTCTTTTGGAGGGT 59.444 50.000 0.00 0.00 0.00 4.34
3148 3354 2.039879 GGAGGGTACACAAGTTGGTGAT 59.960 50.000 7.96 0.00 41.32 3.06
3454 3660 9.249457 GCATTGGAGCTTTATATTTTACTTTCC 57.751 33.333 0.00 0.00 0.00 3.13
3668 3956 9.628746 GGTTTCGCCTTCAATTTACTATTTTAA 57.371 29.630 0.00 0.00 0.00 1.52
3969 4257 2.046285 GGAAGGTGGCATGGAACGG 61.046 63.158 0.00 0.00 0.00 4.44
4014 4302 7.212274 GTGTACCAAGTTCTGAAAACCTACTA 58.788 38.462 0.00 0.00 0.00 1.82
4211 4499 8.212312 TGGAATACAAGTACTTCAACAGGTAAA 58.788 33.333 4.77 0.00 0.00 2.01
4212 4500 9.059260 GGAATACAAGTACTTCAACAGGTAAAA 57.941 33.333 4.77 0.00 0.00 1.52
4640 4935 6.889177 TCAATGGCATTCTTTATTACACTCCA 59.111 34.615 10.36 0.00 0.00 3.86
4909 5204 9.643693 AACAGCATAATAATTTCTTTTCACTGG 57.356 29.630 0.00 0.00 0.00 4.00
4913 5208 7.166473 GCATAATAATTTCTTTTCACTGGCTCG 59.834 37.037 0.00 0.00 0.00 5.03
4952 5247 4.380843 TGTGACAATACCCATCTTGGTT 57.619 40.909 0.00 0.00 39.91 3.67
5222 5517 2.351706 TAGGTCTTGCGGGTGTTTTT 57.648 45.000 0.00 0.00 0.00 1.94
5268 5563 3.124466 GCTGGCTTTTGTTTTCGTTTGTT 59.876 39.130 0.00 0.00 0.00 2.83
5404 5699 9.434559 GAAATTATTAGCGTGACAATTAGGTTC 57.565 33.333 0.00 0.00 0.00 3.62
5572 5882 4.822350 GTGGAGGAGCAAGAAACTTTTAGT 59.178 41.667 0.00 0.00 0.00 2.24
5611 5921 4.561606 ACATATTTCACGTAGAGCAACGAC 59.438 41.667 12.36 0.00 45.68 4.34
5616 5926 0.949397 ACGTAGAGCAACGACTCACA 59.051 50.000 12.36 0.00 45.68 3.58
5631 5941 6.053005 ACGACTCACAAAATGGAGAAGTTAA 58.947 36.000 0.00 0.00 35.17 2.01
5660 5970 6.823182 TGATGACTTGGTGAAATATCGACATT 59.177 34.615 0.00 0.00 0.00 2.71
5666 5976 8.665685 ACTTGGTGAAATATCGACATTAACTTC 58.334 33.333 0.00 0.00 0.00 3.01
5669 5979 8.879759 TGGTGAAATATCGACATTAACTTCTTC 58.120 33.333 0.00 0.00 0.00 2.87
5707 6018 4.275936 GCACAACAGACATAAGAAACCACT 59.724 41.667 0.00 0.00 0.00 4.00
5723 6034 9.892130 AAGAAACCACTGAGTTCTTATAATAGG 57.108 33.333 0.00 0.00 0.00 2.57
5730 6041 5.611374 TGAGTTCTTATAATAGGCTGCCAC 58.389 41.667 22.65 5.89 0.00 5.01
5894 6211 4.422073 TTAGGACACATTGCCTATCCAG 57.578 45.455 0.00 0.00 36.68 3.86
5960 6281 3.366374 GCAGACTATGTCAAGGCCAAAAC 60.366 47.826 5.01 0.00 34.60 2.43
5975 6296 2.800250 CAAAACTTGGAGATCCCTGCT 58.200 47.619 0.00 0.00 35.38 4.24
5981 6302 2.122167 GGAGATCCCTGCTCGTCGT 61.122 63.158 0.00 0.00 33.19 4.34
6074 6395 3.245346 TGTCCACGGCCATCACCA 61.245 61.111 2.24 0.00 0.00 4.17
6075 6396 2.746277 GTCCACGGCCATCACCAC 60.746 66.667 2.24 0.00 0.00 4.16
6076 6397 3.245346 TCCACGGCCATCACCACA 61.245 61.111 2.24 0.00 0.00 4.17
6077 6398 2.045045 CCACGGCCATCACCACAT 60.045 61.111 2.24 0.00 0.00 3.21
6093 6414 7.610580 TCACCACATCATCACCTATATACAA 57.389 36.000 0.00 0.00 0.00 2.41
6097 6418 7.099764 CCACATCATCACCTATATACAACCTC 58.900 42.308 0.00 0.00 0.00 3.85
6101 6422 4.848562 TCACCTATATACAACCTCGCAG 57.151 45.455 0.00 0.00 0.00 5.18
6110 6431 0.176680 CAACCTCGCAGCTATGGAGT 59.823 55.000 6.98 0.00 0.00 3.85
6114 6435 0.593518 CTCGCAGCTATGGAGTGACG 60.594 60.000 0.00 0.00 0.00 4.35
6119 6440 2.159226 GCAGCTATGGAGTGACGTACTT 60.159 50.000 0.00 0.00 40.53 2.24
6124 6445 1.542492 TGGAGTGACGTACTTCCTCC 58.458 55.000 20.60 20.60 40.53 4.30
6128 6449 1.538950 AGTGACGTACTTCCTCCGTTC 59.461 52.381 0.00 0.00 35.67 3.95
6130 6451 1.538512 TGACGTACTTCCTCCGTTCTG 59.461 52.381 0.00 0.00 34.51 3.02
6132 6453 2.227388 GACGTACTTCCTCCGTTCTGAA 59.773 50.000 0.00 0.00 34.51 3.02
6133 6454 2.624838 ACGTACTTCCTCCGTTCTGAAA 59.375 45.455 0.00 0.00 0.00 2.69
6137 6458 4.884668 ACTTCCTCCGTTCTGAAATACA 57.115 40.909 0.00 0.00 0.00 2.29
6138 6459 5.223449 ACTTCCTCCGTTCTGAAATACAA 57.777 39.130 0.00 0.00 0.00 2.41
6140 6461 4.884668 TCCTCCGTTCTGAAATACAAGT 57.115 40.909 0.00 0.00 0.00 3.16
6142 6463 3.933332 CCTCCGTTCTGAAATACAAGTCC 59.067 47.826 0.00 0.00 0.00 3.85
6144 6465 5.223449 TCCGTTCTGAAATACAAGTCCTT 57.777 39.130 0.00 0.00 0.00 3.36
6150 6471 8.436200 CGTTCTGAAATACAAGTCCTTTTAGAG 58.564 37.037 0.00 0.00 29.68 2.43
6151 6472 9.490379 GTTCTGAAATACAAGTCCTTTTAGAGA 57.510 33.333 0.00 0.00 29.68 3.10
6156 6477 9.449719 GAAATACAAGTCCTTTTAGAGATTCCA 57.550 33.333 0.00 0.00 0.00 3.53
6157 6478 9.981460 AAATACAAGTCCTTTTAGAGATTCCAT 57.019 29.630 0.00 0.00 0.00 3.41
6158 6479 9.981460 AATACAAGTCCTTTTAGAGATTCCATT 57.019 29.630 0.00 0.00 0.00 3.16
6202 6523 7.983307 ACACGAACTTATATTCTAGAAGACGT 58.017 34.615 11.53 8.16 40.53 4.34
6203 6524 8.121708 ACACGAACTTATATTCTAGAAGACGTC 58.878 37.037 7.70 7.70 39.29 4.34
6204 6525 8.336806 CACGAACTTATATTCTAGAAGACGTCT 58.663 37.037 13.58 13.58 39.29 4.18
6205 6526 9.539825 ACGAACTTATATTCTAGAAGACGTCTA 57.460 33.333 20.39 1.50 38.18 2.59
6215 6536 8.476657 TTCTAGAAGACGTCTATATACATCCG 57.523 38.462 20.39 5.28 38.20 4.18
6216 6537 7.834803 TCTAGAAGACGTCTATATACATCCGA 58.165 38.462 20.39 7.46 38.20 4.55
6217 6538 8.309656 TCTAGAAGACGTCTATATACATCCGAA 58.690 37.037 20.39 0.00 38.20 4.30
6218 6539 7.925043 AGAAGACGTCTATATACATCCGAAT 57.075 36.000 20.39 0.00 33.56 3.34
6219 6540 7.753659 AGAAGACGTCTATATACATCCGAATG 58.246 38.462 20.39 0.00 35.22 2.67
6220 6541 7.390996 AGAAGACGTCTATATACATCCGAATGT 59.609 37.037 20.39 0.00 41.26 2.71
6269 6691 6.600882 AGACTTGTATTTAGAAACGGAGGA 57.399 37.500 0.00 0.00 0.00 3.71
6281 6703 1.538047 ACGGAGGAAGTACGTGCTTA 58.462 50.000 19.21 0.00 39.64 3.09
6290 6712 1.814394 AGTACGTGCTTACGATGGTCA 59.186 47.619 0.00 0.00 36.85 4.02
6291 6713 1.916000 GTACGTGCTTACGATGGTCAC 59.084 52.381 6.85 0.00 36.85 3.67
6292 6714 0.601558 ACGTGCTTACGATGGTCACT 59.398 50.000 6.85 0.00 36.85 3.41
6293 6715 1.000506 ACGTGCTTACGATGGTCACTT 59.999 47.619 6.85 0.00 36.85 3.16
6294 6716 1.390123 CGTGCTTACGATGGTCACTTG 59.610 52.381 0.00 0.00 34.64 3.16
6295 6717 2.683968 GTGCTTACGATGGTCACTTGA 58.316 47.619 0.00 0.00 0.00 3.02
6296 6718 2.412089 GTGCTTACGATGGTCACTTGAC 59.588 50.000 0.34 0.34 44.04 3.18
6297 6719 2.299013 TGCTTACGATGGTCACTTGACT 59.701 45.455 9.20 0.00 44.20 3.41
6298 6720 3.244078 TGCTTACGATGGTCACTTGACTT 60.244 43.478 9.20 0.00 44.20 3.01
6300 6722 4.377431 GCTTACGATGGTCACTTGACTTTG 60.377 45.833 9.20 4.47 44.20 2.77
6301 6723 3.469008 ACGATGGTCACTTGACTTTGA 57.531 42.857 9.20 0.00 44.20 2.69
6302 6724 4.008074 ACGATGGTCACTTGACTTTGAT 57.992 40.909 9.20 0.00 44.20 2.57
6303 6725 5.147330 ACGATGGTCACTTGACTTTGATA 57.853 39.130 9.20 0.00 44.20 2.15
6304 6726 4.929808 ACGATGGTCACTTGACTTTGATAC 59.070 41.667 9.20 0.00 44.20 2.24
6323 6745 0.592500 CGATCGCGACATGCTACAGT 60.593 55.000 12.93 0.00 43.27 3.55
6332 6754 1.203994 ACATGCTACAGTGTACCGGAC 59.796 52.381 9.46 2.18 0.00 4.79
6344 6766 1.000171 GTACCGGACCCGACCATTATC 60.000 57.143 9.46 0.00 42.83 1.75
6345 6767 1.370064 CCGGACCCGACCATTATCC 59.630 63.158 10.42 0.00 42.83 2.59
6346 6768 1.119574 CCGGACCCGACCATTATCCT 61.120 60.000 10.42 0.00 42.83 3.24
6347 6769 1.624336 CGGACCCGACCATTATCCTA 58.376 55.000 1.54 0.00 42.83 2.94
6369 6791 7.500559 TCCTACTAGTTATTAAGTCGAGTTCCC 59.499 40.741 9.20 0.00 0.00 3.97
6426 6850 2.165319 AACCAACTAGCGACTTGACC 57.835 50.000 0.00 0.00 0.00 4.02
6427 6851 0.320697 ACCAACTAGCGACTTGACCC 59.679 55.000 0.00 0.00 0.00 4.46
6428 6852 0.391263 CCAACTAGCGACTTGACCCC 60.391 60.000 0.00 0.00 0.00 4.95
6429 6853 0.736325 CAACTAGCGACTTGACCCCG 60.736 60.000 0.00 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.261572 CGTGCCTCTCTTGAAATGGAAAAA 60.262 41.667 0.00 0.00 0.00 1.94
33 34 3.253188 CGTGCCTCTCTTGAAATGGAAAA 59.747 43.478 0.00 0.00 0.00 2.29
34 35 2.813754 CGTGCCTCTCTTGAAATGGAAA 59.186 45.455 0.00 0.00 0.00 3.13
35 36 2.426522 CGTGCCTCTCTTGAAATGGAA 58.573 47.619 0.00 0.00 0.00 3.53
36 37 1.339055 CCGTGCCTCTCTTGAAATGGA 60.339 52.381 0.00 0.00 0.00 3.41
37 38 1.089920 CCGTGCCTCTCTTGAAATGG 58.910 55.000 0.00 0.00 0.00 3.16
38 39 1.813513 ACCGTGCCTCTCTTGAAATG 58.186 50.000 0.00 0.00 0.00 2.32
39 40 2.568623 AACCGTGCCTCTCTTGAAAT 57.431 45.000 0.00 0.00 0.00 2.17
44 45 0.182775 ACCAAAACCGTGCCTCTCTT 59.817 50.000 0.00 0.00 0.00 2.85
67 68 4.701663 CACAACCGTGCCTCTCAT 57.298 55.556 0.00 0.00 36.06 2.90
151 153 1.166531 AGCAAAACCGTGCCTCTCAC 61.167 55.000 0.00 0.00 46.14 3.51
152 154 0.465460 AAGCAAAACCGTGCCTCTCA 60.465 50.000 0.00 0.00 46.14 3.27
350 384 2.443632 TCCCATGTTGGTAGGTTTGACA 59.556 45.455 0.00 0.00 35.17 3.58
361 396 5.945784 TCTTCAAAACTAGATCCCATGTTGG 59.054 40.000 0.00 0.00 37.25 3.77
392 427 5.344884 GTTTTCACCGTTGGATTTCTTTCA 58.655 37.500 0.00 0.00 0.00 2.69
394 429 4.356289 CGTTTTCACCGTTGGATTTCTTT 58.644 39.130 0.00 0.00 0.00 2.52
395 430 3.243267 CCGTTTTCACCGTTGGATTTCTT 60.243 43.478 0.00 0.00 0.00 2.52
398 433 2.025898 ACCGTTTTCACCGTTGGATTT 58.974 42.857 0.00 0.00 0.00 2.17
521 560 0.739462 TCAGGTTGCGATAAGTGGCG 60.739 55.000 0.00 0.00 0.00 5.69
527 566 3.334691 CCACTTTCTCAGGTTGCGATAA 58.665 45.455 0.00 0.00 0.00 1.75
528 567 2.354704 CCCACTTTCTCAGGTTGCGATA 60.355 50.000 0.00 0.00 0.00 2.92
529 568 1.611673 CCCACTTTCTCAGGTTGCGAT 60.612 52.381 0.00 0.00 0.00 4.58
530 569 0.250295 CCCACTTTCTCAGGTTGCGA 60.250 55.000 0.00 0.00 0.00 5.10
531 570 0.250295 TCCCACTTTCTCAGGTTGCG 60.250 55.000 0.00 0.00 0.00 4.85
532 571 1.202818 ACTCCCACTTTCTCAGGTTGC 60.203 52.381 0.00 0.00 0.00 4.17
533 572 2.104792 TCACTCCCACTTTCTCAGGTTG 59.895 50.000 0.00 0.00 0.00 3.77
534 573 2.408565 TCACTCCCACTTTCTCAGGTT 58.591 47.619 0.00 0.00 0.00 3.50
535 574 2.103153 TCACTCCCACTTTCTCAGGT 57.897 50.000 0.00 0.00 0.00 4.00
536 575 2.836981 AGATCACTCCCACTTTCTCAGG 59.163 50.000 0.00 0.00 0.00 3.86
537 576 4.550076 AAGATCACTCCCACTTTCTCAG 57.450 45.455 0.00 0.00 0.00 3.35
538 577 4.645535 CAAAGATCACTCCCACTTTCTCA 58.354 43.478 0.00 0.00 31.52 3.27
539 578 3.438434 GCAAAGATCACTCCCACTTTCTC 59.562 47.826 0.00 0.00 31.52 2.87
540 579 3.181440 TGCAAAGATCACTCCCACTTTCT 60.181 43.478 0.00 0.00 31.52 2.52
541 580 3.149196 TGCAAAGATCACTCCCACTTTC 58.851 45.455 0.00 0.00 31.52 2.62
542 581 3.228188 TGCAAAGATCACTCCCACTTT 57.772 42.857 0.00 0.00 33.69 2.66
543 582 2.887152 GTTGCAAAGATCACTCCCACTT 59.113 45.455 0.00 0.00 0.00 3.16
544 583 2.508526 GTTGCAAAGATCACTCCCACT 58.491 47.619 0.00 0.00 0.00 4.00
545 584 1.197721 CGTTGCAAAGATCACTCCCAC 59.802 52.381 6.52 0.00 0.00 4.61
546 585 1.071542 TCGTTGCAAAGATCACTCCCA 59.928 47.619 11.22 0.00 0.00 4.37
547 586 1.734465 CTCGTTGCAAAGATCACTCCC 59.266 52.381 15.52 0.00 0.00 4.30
548 587 2.417719 ACTCGTTGCAAAGATCACTCC 58.582 47.619 15.52 0.00 0.00 3.85
549 588 4.238514 AGTACTCGTTGCAAAGATCACTC 58.761 43.478 15.52 5.56 0.00 3.51
550 589 4.238514 GAGTACTCGTTGCAAAGATCACT 58.761 43.478 20.90 20.90 0.00 3.41
551 590 3.368236 GGAGTACTCGTTGCAAAGATCAC 59.632 47.826 15.52 14.91 0.00 3.06
552 591 3.258372 AGGAGTACTCGTTGCAAAGATCA 59.742 43.478 15.52 3.95 0.00 2.92
553 592 3.851098 AGGAGTACTCGTTGCAAAGATC 58.149 45.455 15.52 9.90 0.00 2.75
554 593 3.963428 AGGAGTACTCGTTGCAAAGAT 57.037 42.857 15.52 8.63 0.00 2.40
555 594 3.746045 AAGGAGTACTCGTTGCAAAGA 57.254 42.857 25.72 14.45 36.47 2.52
556 595 4.989168 AGTTAAGGAGTACTCGTTGCAAAG 59.011 41.667 31.33 2.46 38.07 2.77
557 596 4.952460 AGTTAAGGAGTACTCGTTGCAAA 58.048 39.130 31.33 19.59 38.07 3.68
558 597 4.595762 AGTTAAGGAGTACTCGTTGCAA 57.404 40.909 31.33 20.17 38.07 4.08
559 598 4.763793 ACTAGTTAAGGAGTACTCGTTGCA 59.236 41.667 31.33 19.44 38.07 4.08
560 599 5.094134 CACTAGTTAAGGAGTACTCGTTGC 58.906 45.833 31.33 24.42 38.07 4.17
561 600 6.492007 TCACTAGTTAAGGAGTACTCGTTG 57.508 41.667 31.33 20.36 38.07 4.10
562 601 7.700022 AATCACTAGTTAAGGAGTACTCGTT 57.300 36.000 28.20 28.20 40.33 3.85
563 602 7.413877 CGAAATCACTAGTTAAGGAGTACTCGT 60.414 40.741 16.56 14.43 0.00 4.18
564 603 6.906143 CGAAATCACTAGTTAAGGAGTACTCG 59.094 42.308 16.56 2.92 0.00 4.18
565 604 7.909641 GTCGAAATCACTAGTTAAGGAGTACTC 59.090 40.741 14.87 14.87 0.00 2.59
566 605 7.392673 TGTCGAAATCACTAGTTAAGGAGTACT 59.607 37.037 0.00 0.00 0.00 2.73
567 606 7.533426 TGTCGAAATCACTAGTTAAGGAGTAC 58.467 38.462 0.00 0.00 0.00 2.73
568 607 7.609146 TCTGTCGAAATCACTAGTTAAGGAGTA 59.391 37.037 0.00 0.00 0.00 2.59
569 608 6.433404 TCTGTCGAAATCACTAGTTAAGGAGT 59.567 38.462 0.00 0.00 0.00 3.85
570 609 6.853720 TCTGTCGAAATCACTAGTTAAGGAG 58.146 40.000 0.00 0.00 0.00 3.69
571 610 6.829229 TCTGTCGAAATCACTAGTTAAGGA 57.171 37.500 0.00 0.00 0.00 3.36
572 611 6.477033 CCATCTGTCGAAATCACTAGTTAAGG 59.523 42.308 0.00 0.00 0.00 2.69
573 612 6.019479 GCCATCTGTCGAAATCACTAGTTAAG 60.019 42.308 0.00 0.00 0.00 1.85
574 613 5.810587 GCCATCTGTCGAAATCACTAGTTAA 59.189 40.000 0.00 0.00 0.00 2.01
575 614 5.105513 TGCCATCTGTCGAAATCACTAGTTA 60.106 40.000 0.00 0.00 0.00 2.24
576 615 4.184629 GCCATCTGTCGAAATCACTAGTT 58.815 43.478 0.00 0.00 0.00 2.24
577 616 3.195610 TGCCATCTGTCGAAATCACTAGT 59.804 43.478 0.00 0.00 0.00 2.57
578 617 3.553511 GTGCCATCTGTCGAAATCACTAG 59.446 47.826 0.00 0.00 0.00 2.57
579 618 3.056179 TGTGCCATCTGTCGAAATCACTA 60.056 43.478 0.00 0.00 0.00 2.74
580 619 2.289631 TGTGCCATCTGTCGAAATCACT 60.290 45.455 0.00 0.00 0.00 3.41
581 620 2.076100 TGTGCCATCTGTCGAAATCAC 58.924 47.619 0.00 0.00 0.00 3.06
582 621 2.076100 GTGTGCCATCTGTCGAAATCA 58.924 47.619 0.00 0.00 0.00 2.57
583 622 2.350522 AGTGTGCCATCTGTCGAAATC 58.649 47.619 0.00 0.00 0.00 2.17
584 623 2.479566 AGTGTGCCATCTGTCGAAAT 57.520 45.000 0.00 0.00 0.00 2.17
585 624 2.254546 AAGTGTGCCATCTGTCGAAA 57.745 45.000 0.00 0.00 0.00 3.46
586 625 2.254546 AAAGTGTGCCATCTGTCGAA 57.745 45.000 0.00 0.00 0.00 3.71
587 626 2.254546 AAAAGTGTGCCATCTGTCGA 57.745 45.000 0.00 0.00 0.00 4.20
588 627 4.685169 AATAAAAGTGTGCCATCTGTCG 57.315 40.909 0.00 0.00 0.00 4.35
589 628 7.850982 CGTATAAATAAAAGTGTGCCATCTGTC 59.149 37.037 0.00 0.00 0.00 3.51
590 629 7.335924 ACGTATAAATAAAAGTGTGCCATCTGT 59.664 33.333 0.00 0.00 0.00 3.41
591 630 7.693952 ACGTATAAATAAAAGTGTGCCATCTG 58.306 34.615 0.00 0.00 0.00 2.90
592 631 7.859325 ACGTATAAATAAAAGTGTGCCATCT 57.141 32.000 0.00 0.00 0.00 2.90
593 632 8.905103 AAACGTATAAATAAAAGTGTGCCATC 57.095 30.769 0.00 0.00 0.00 3.51
594 633 7.694784 CGAAACGTATAAATAAAAGTGTGCCAT 59.305 33.333 0.00 0.00 0.00 4.40
595 634 7.016466 CGAAACGTATAAATAAAAGTGTGCCA 58.984 34.615 0.00 0.00 0.00 4.92
596 635 6.022017 GCGAAACGTATAAATAAAAGTGTGCC 60.022 38.462 0.00 0.00 0.00 5.01
597 636 6.022017 GGCGAAACGTATAAATAAAAGTGTGC 60.022 38.462 0.00 0.00 0.00 4.57
598 637 6.191413 CGGCGAAACGTATAAATAAAAGTGTG 59.809 38.462 0.00 0.00 0.00 3.82
599 638 6.242829 CGGCGAAACGTATAAATAAAAGTGT 58.757 36.000 0.00 0.00 0.00 3.55
600 639 5.168329 GCGGCGAAACGTATAAATAAAAGTG 59.832 40.000 12.98 0.00 35.98 3.16
615 654 2.556287 CCAGTCAAGCGGCGAAAC 59.444 61.111 12.98 1.76 0.00 2.78
673 714 2.273449 CAGAAGCCGGCCCATTCT 59.727 61.111 26.15 22.76 33.62 2.40
725 796 1.704070 GCGATCGATAGCCTCCTTTC 58.296 55.000 21.57 0.00 0.00 2.62
744 815 2.159170 CCTTCTCTTCTACCAGGAAGCG 60.159 54.545 0.00 0.00 41.55 4.68
745 816 3.100671 TCCTTCTCTTCTACCAGGAAGC 58.899 50.000 0.00 0.00 41.55 3.86
746 817 5.660864 AGATTCCTTCTCTTCTACCAGGAAG 59.339 44.000 0.00 0.00 44.87 3.46
747 818 5.423610 CAGATTCCTTCTCTTCTACCAGGAA 59.576 44.000 0.00 1.53 45.55 3.36
748 819 4.959210 CAGATTCCTTCTCTTCTACCAGGA 59.041 45.833 0.00 0.00 29.93 3.86
749 820 4.959210 TCAGATTCCTTCTCTTCTACCAGG 59.041 45.833 0.00 0.00 29.93 4.45
750 821 5.068987 CCTCAGATTCCTTCTCTTCTACCAG 59.931 48.000 0.00 0.00 29.93 4.00
753 824 4.343814 CCCCTCAGATTCCTTCTCTTCTAC 59.656 50.000 0.00 0.00 29.93 2.59
755 826 3.013417 TCCCCTCAGATTCCTTCTCTTCT 59.987 47.826 0.00 0.00 29.93 2.85
757 828 3.498614 TCCCCTCAGATTCCTTCTCTT 57.501 47.619 0.00 0.00 29.93 2.85
764 835 2.937519 GGATTGTTCCCCTCAGATTCC 58.062 52.381 0.00 0.00 35.84 3.01
793 864 4.230502 TCCTTGCTCCCCTCAGATATTTTT 59.769 41.667 0.00 0.00 0.00 1.94
794 865 3.788142 TCCTTGCTCCCCTCAGATATTTT 59.212 43.478 0.00 0.00 0.00 1.82
795 866 3.397527 TCCTTGCTCCCCTCAGATATTT 58.602 45.455 0.00 0.00 0.00 1.40
796 867 3.066208 TCCTTGCTCCCCTCAGATATT 57.934 47.619 0.00 0.00 0.00 1.28
797 868 2.708325 GTTCCTTGCTCCCCTCAGATAT 59.292 50.000 0.00 0.00 0.00 1.63
798 869 2.119495 GTTCCTTGCTCCCCTCAGATA 58.881 52.381 0.00 0.00 0.00 1.98
799 870 0.915364 GTTCCTTGCTCCCCTCAGAT 59.085 55.000 0.00 0.00 0.00 2.90
800 871 1.544825 CGTTCCTTGCTCCCCTCAGA 61.545 60.000 0.00 0.00 0.00 3.27
801 872 1.078848 CGTTCCTTGCTCCCCTCAG 60.079 63.158 0.00 0.00 0.00 3.35
802 873 1.535444 TCGTTCCTTGCTCCCCTCA 60.535 57.895 0.00 0.00 0.00 3.86
803 874 1.219393 CTCGTTCCTTGCTCCCCTC 59.781 63.158 0.00 0.00 0.00 4.30
804 875 1.128188 AACTCGTTCCTTGCTCCCCT 61.128 55.000 0.00 0.00 0.00 4.79
805 876 0.250770 AAACTCGTTCCTTGCTCCCC 60.251 55.000 0.00 0.00 0.00 4.81
806 877 1.157585 GAAACTCGTTCCTTGCTCCC 58.842 55.000 0.00 0.00 0.00 4.30
857 928 2.281762 GCGAGTCCACTTATTTAGCACG 59.718 50.000 0.00 0.00 0.00 5.34
908 979 2.508716 TGGTCTCCAGAGTACGTATCCT 59.491 50.000 0.00 0.00 0.00 3.24
909 980 2.928334 TGGTCTCCAGAGTACGTATCC 58.072 52.381 0.00 0.00 0.00 2.59
910 981 4.639310 TCTTTGGTCTCCAGAGTACGTATC 59.361 45.833 0.00 0.00 37.10 2.24
911 982 4.597004 TCTTTGGTCTCCAGAGTACGTAT 58.403 43.478 0.00 0.00 37.10 3.06
912 983 4.025040 TCTTTGGTCTCCAGAGTACGTA 57.975 45.455 6.29 0.00 37.10 3.57
914 985 3.367498 CCTTCTTTGGTCTCCAGAGTACG 60.367 52.174 6.29 0.00 37.10 3.67
915 986 3.055747 CCCTTCTTTGGTCTCCAGAGTAC 60.056 52.174 6.29 0.00 37.10 2.73
916 987 3.173965 CCCTTCTTTGGTCTCCAGAGTA 58.826 50.000 6.29 0.00 37.10 2.59
917 988 1.981495 CCCTTCTTTGGTCTCCAGAGT 59.019 52.381 6.29 0.00 37.10 3.24
919 990 0.693049 GCCCTTCTTTGGTCTCCAGA 59.307 55.000 0.00 0.00 33.81 3.86
932 1005 1.153005 CAGGATCTGGCTGCCCTTC 60.153 63.158 17.53 9.95 0.00 3.46
1032 1109 3.028130 GGAGAGGGGTAGAGAAGAAGTG 58.972 54.545 0.00 0.00 0.00 3.16
1033 1110 2.930405 AGGAGAGGGGTAGAGAAGAAGT 59.070 50.000 0.00 0.00 0.00 3.01
1045 1128 0.178935 GATGGGAGAGAGGAGAGGGG 60.179 65.000 0.00 0.00 0.00 4.79
1053 1136 0.179065 TTGCATGCGATGGGAGAGAG 60.179 55.000 14.09 0.00 0.00 3.20
1054 1137 0.471191 ATTGCATGCGATGGGAGAGA 59.529 50.000 19.93 0.00 0.00 3.10
1082 1166 2.032030 AGAACAAATCAAACGGCGTCAG 60.032 45.455 15.17 9.40 0.00 3.51
1084 1168 2.307049 CAGAACAAATCAAACGGCGTC 58.693 47.619 15.17 0.00 0.00 5.19
1142 1226 1.455849 CAGACCCAGACCCAAAGCA 59.544 57.895 0.00 0.00 0.00 3.91
1150 1234 3.302347 CTCCCACGCAGACCCAGAC 62.302 68.421 0.00 0.00 0.00 3.51
1151 1235 2.435120 TACTCCCACGCAGACCCAGA 62.435 60.000 0.00 0.00 0.00 3.86
1152 1236 1.541310 TTACTCCCACGCAGACCCAG 61.541 60.000 0.00 0.00 0.00 4.45
1153 1237 1.534476 TTACTCCCACGCAGACCCA 60.534 57.895 0.00 0.00 0.00 4.51
1154 1238 1.218316 CTTACTCCCACGCAGACCC 59.782 63.158 0.00 0.00 0.00 4.46
1260 1348 7.576403 TGAGTTCCTATTGATTTGATGATGGA 58.424 34.615 0.00 0.00 0.00 3.41
1275 1363 1.520666 CCGCCCGTTGAGTTCCTAT 59.479 57.895 0.00 0.00 0.00 2.57
1322 1410 1.666189 CGGGGAGAGAAAAGAAATCGC 59.334 52.381 0.00 0.00 0.00 4.58
1351 1439 7.048629 TGCATTGAGAAGATTTGTTGGTTAA 57.951 32.000 0.00 0.00 0.00 2.01
1353 1441 5.510179 CCTGCATTGAGAAGATTTGTTGGTT 60.510 40.000 0.00 0.00 0.00 3.67
1356 1444 3.924686 GCCTGCATTGAGAAGATTTGTTG 59.075 43.478 0.00 0.00 0.00 3.33
1438 1528 2.485479 GGCATGAAGATTAGCCTCCGAA 60.485 50.000 0.00 0.00 43.70 4.30
1492 1582 8.752254 GTTTTCTTTCAATTACTACCTTGTTGC 58.248 33.333 0.00 0.00 0.00 4.17
1494 1584 8.895737 TCGTTTTCTTTCAATTACTACCTTGTT 58.104 29.630 0.00 0.00 0.00 2.83
1531 1625 1.336440 CGTGAAGCCATTGAAACCACA 59.664 47.619 0.00 0.00 0.00 4.17
1540 1634 2.746277 GCCGGTCGTGAAGCCATT 60.746 61.111 1.90 0.00 0.00 3.16
1541 1635 4.778143 GGCCGGTCGTGAAGCCAT 62.778 66.667 1.90 0.00 45.07 4.40
1545 1639 3.883744 AAGCTGGCCGGTCGTGAAG 62.884 63.158 14.55 0.00 0.00 3.02
1576 1680 5.768164 TCATCATCCATGCGAAGTACTAGTA 59.232 40.000 0.00 0.00 31.70 1.82
1577 1681 4.584743 TCATCATCCATGCGAAGTACTAGT 59.415 41.667 0.00 0.00 31.70 2.57
1578 1682 4.920340 GTCATCATCCATGCGAAGTACTAG 59.080 45.833 0.00 0.00 31.70 2.57
1579 1683 4.584743 AGTCATCATCCATGCGAAGTACTA 59.415 41.667 0.00 0.00 31.70 1.82
1580 1684 3.386078 AGTCATCATCCATGCGAAGTACT 59.614 43.478 0.00 0.00 31.70 2.73
1581 1685 3.722147 AGTCATCATCCATGCGAAGTAC 58.278 45.455 0.00 0.00 31.70 2.73
1614 1718 6.146021 GCACAGAGAAGAAGAAGAAGAAGAAG 59.854 42.308 0.00 0.00 0.00 2.85
1615 1719 5.988561 GCACAGAGAAGAAGAAGAAGAAGAA 59.011 40.000 0.00 0.00 0.00 2.52
1616 1720 5.537188 GCACAGAGAAGAAGAAGAAGAAGA 58.463 41.667 0.00 0.00 0.00 2.87
1617 1721 4.385447 CGCACAGAGAAGAAGAAGAAGAAG 59.615 45.833 0.00 0.00 0.00 2.85
1846 1959 7.030768 TGTTTAACAAAAACCTGTCAACTAGC 58.969 34.615 0.00 0.00 0.00 3.42
1866 1979 9.676195 CACTTCAAATGTGTGTCAATATGTTTA 57.324 29.630 0.00 0.00 0.00 2.01
1868 1981 7.147312 CCACTTCAAATGTGTGTCAATATGTT 58.853 34.615 0.00 0.00 33.92 2.71
1950 2068 9.031360 CACACATACACGAAGCTAATACTATTT 57.969 33.333 0.00 0.00 0.00 1.40
1952 2070 7.713750 ACACACATACACGAAGCTAATACTAT 58.286 34.615 0.00 0.00 0.00 2.12
1955 2073 5.803461 TGACACACATACACGAAGCTAATAC 59.197 40.000 0.00 0.00 0.00 1.89
1995 2186 8.034804 CGTGATGTCAATCCACCATATATCTTA 58.965 37.037 0.00 0.00 31.15 2.10
1996 2187 6.875726 CGTGATGTCAATCCACCATATATCTT 59.124 38.462 0.00 0.00 31.15 2.40
1998 2189 6.166279 ACGTGATGTCAATCCACCATATATC 58.834 40.000 0.00 0.00 31.15 1.63
2035 2238 1.904287 AATGTTTGGCGGTGCTAGAA 58.096 45.000 0.00 0.00 0.00 2.10
2050 2253 3.933332 GACTCTGCGCTACCTAAAAATGT 59.067 43.478 9.73 0.00 0.00 2.71
2083 2289 2.243810 TGGTACCCTTGTGGAATTTGC 58.756 47.619 10.07 0.00 38.00 3.68
2133 2339 2.047655 TGTTCACGGTGGATCGGC 60.048 61.111 8.50 0.00 0.00 5.54
2269 2475 7.841277 GCGTGTATTAGTCATGCATAATAATCG 59.159 37.037 0.00 9.11 44.29 3.34
2284 2490 8.680903 AGTGTTACTATGTAAGCGTGTATTAGT 58.319 33.333 0.00 0.00 0.00 2.24
2291 2497 3.789756 CGGAGTGTTACTATGTAAGCGTG 59.210 47.826 0.00 0.00 0.00 5.34
2293 2499 4.282950 TCGGAGTGTTACTATGTAAGCG 57.717 45.455 0.00 0.00 0.00 4.68
2358 2564 1.909302 TGAGCCCCTCTCGAAGAAAAT 59.091 47.619 0.00 0.00 44.86 1.82
2370 2576 3.595190 ACTTTACAACTTTGAGCCCCT 57.405 42.857 0.00 0.00 0.00 4.79
2473 2679 6.245408 GCCATAATACACCCCTCAATCATTA 58.755 40.000 0.00 0.00 0.00 1.90
2498 2704 0.108207 TTGCCCCAAAAAGTGCCATG 59.892 50.000 0.00 0.00 0.00 3.66
2591 2797 5.941948 ATACTGCACTAACAAAGGACAAC 57.058 39.130 0.00 0.00 0.00 3.32
2610 2816 6.153680 TGTTGGGACCAAAATATGACCAATAC 59.846 38.462 5.17 0.00 38.47 1.89
2792 2998 3.568007 TCCAAAACACCATGCAGTAAGAC 59.432 43.478 0.00 0.00 0.00 3.01
3091 3297 6.757947 CCATTTCACCTGTAATAAAAGCCATG 59.242 38.462 0.00 0.00 0.00 3.66
3133 3339 3.575256 ACGGAGTATCACCAACTTGTGTA 59.425 43.478 0.00 0.00 41.94 2.90
3454 3660 7.041916 ACACATGTATTGAAAATTGCAAACCAG 60.042 33.333 1.71 0.00 0.00 4.00
3538 3747 4.036734 ACATGATGCGTTATGACCCAATTC 59.963 41.667 16.88 0.00 0.00 2.17
3969 4257 5.133221 ACACCTCCTTCATGCAAATATACC 58.867 41.667 0.00 0.00 0.00 2.73
4014 4302 2.088104 TCCCGTCTATTGGAGCATCT 57.912 50.000 0.00 0.00 33.73 2.90
4257 4545 9.019656 TGTGATATTTAAGTGCCACAATACTTT 57.980 29.630 0.00 0.00 38.11 2.66
4301 4589 5.411669 AGAATAAAATGACGGTCAGGACAAC 59.588 40.000 16.84 5.59 0.00 3.32
4349 4643 8.891671 ATAAATTCAACATGCAAGTCAAAGTT 57.108 26.923 0.00 1.61 0.00 2.66
4490 4784 0.532573 GGGCTCGATGAGTTCTCACA 59.467 55.000 4.58 0.00 31.39 3.58
4640 4935 3.254166 CACCAGCTTGCTCAAGTATTTGT 59.746 43.478 10.86 0.70 40.45 2.83
4906 5201 0.461548 TATCCTTCTGCACGAGCCAG 59.538 55.000 1.39 0.25 41.13 4.85
4909 5204 2.359531 AGTAGTATCCTTCTGCACGAGC 59.640 50.000 0.00 0.00 42.57 5.03
4913 5208 4.865365 GTCACAAGTAGTATCCTTCTGCAC 59.135 45.833 0.00 0.00 0.00 4.57
4952 5247 3.025322 ACCAAAACAATGAGGGACACA 57.975 42.857 0.00 0.00 0.00 3.72
4976 5271 4.214971 GCACTCAGATTCACAATGTTGACT 59.785 41.667 0.00 0.00 0.00 3.41
5144 5439 8.805175 ACAATGATGTCACAAATCCAAAAGATA 58.195 29.630 0.00 0.00 33.41 1.98
5222 5517 4.343526 ACACAAACAATGGCATAAACTCCA 59.656 37.500 0.00 0.00 36.70 3.86
5268 5563 4.167652 TCTTTGTTTCCGGGACCTTTAA 57.832 40.909 0.00 0.00 0.00 1.52
5549 5859 4.822350 ACTAAAAGTTTCTTGCTCCTCCAC 59.178 41.667 0.00 0.00 0.00 4.02
5584 5894 8.130469 TCGTTGCTCTACGTGAAATATGTATAA 58.870 33.333 0.00 0.00 42.01 0.98
5586 5896 6.417044 GTCGTTGCTCTACGTGAAATATGTAT 59.583 38.462 0.00 0.00 42.01 2.29
5611 5921 9.748708 TCAATTTTAACTTCTCCATTTTGTGAG 57.251 29.630 0.00 0.00 0.00 3.51
5631 5941 8.184192 GTCGATATTTCACCAAGTCATCAATTT 58.816 33.333 0.00 0.00 0.00 1.82
5660 5970 9.915629 TGCACTTTTAAACAAAAGAAGAAGTTA 57.084 25.926 14.89 0.00 41.12 2.24
5666 5976 7.791949 TGTTGTGCACTTTTAAACAAAAGAAG 58.208 30.769 19.41 8.88 41.12 2.85
5669 5979 7.095857 TGTCTGTTGTGCACTTTTAAACAAAAG 60.096 33.333 19.41 5.87 43.49 2.27
5672 5982 5.773575 TGTCTGTTGTGCACTTTTAAACAA 58.226 33.333 19.41 7.81 30.90 2.83
5677 5988 7.561021 TTCTTATGTCTGTTGTGCACTTTTA 57.439 32.000 19.41 0.00 0.00 1.52
5707 6018 5.454755 GGTGGCAGCCTATTATAAGAACTCA 60.455 44.000 14.15 0.00 0.00 3.41
5723 6034 2.507484 TGCTAATCATATGGTGGCAGC 58.493 47.619 10.30 10.30 0.00 5.25
5871 6188 5.186256 TGGATAGGCAATGTGTCCTAAAA 57.814 39.130 0.00 0.00 38.35 1.52
5872 6189 4.385199 CCTGGATAGGCAATGTGTCCTAAA 60.385 45.833 0.00 0.00 38.35 1.85
5873 6190 3.136443 CCTGGATAGGCAATGTGTCCTAA 59.864 47.826 0.00 0.00 38.35 2.69
5878 6195 3.245229 TGTTTCCTGGATAGGCAATGTGT 60.245 43.478 0.00 0.00 44.22 3.72
5883 6200 3.420893 CACTTGTTTCCTGGATAGGCAA 58.579 45.455 0.00 0.33 44.22 4.52
5894 6211 5.173131 CGAGTAATTTTGTGCACTTGTTTCC 59.827 40.000 19.41 1.54 0.00 3.13
5960 6281 0.103937 GACGAGCAGGGATCTCCAAG 59.896 60.000 0.00 0.00 38.24 3.61
5981 6302 0.394216 CCCCCACAAAGCATCGATGA 60.394 55.000 29.20 0.00 0.00 2.92
6031 6352 4.711949 CCGAGCCCAAGCAGTGCT 62.712 66.667 13.14 13.14 43.56 4.40
6064 6385 1.027357 GTGATGATGTGGTGATGGCC 58.973 55.000 0.00 0.00 0.00 5.36
6074 6395 6.572509 GCGAGGTTGTATATAGGTGATGATGT 60.573 42.308 0.00 0.00 0.00 3.06
6075 6396 5.807520 GCGAGGTTGTATATAGGTGATGATG 59.192 44.000 0.00 0.00 0.00 3.07
6076 6397 5.480422 TGCGAGGTTGTATATAGGTGATGAT 59.520 40.000 0.00 0.00 0.00 2.45
6077 6398 4.830600 TGCGAGGTTGTATATAGGTGATGA 59.169 41.667 0.00 0.00 0.00 2.92
6093 6414 0.684479 TCACTCCATAGCTGCGAGGT 60.684 55.000 0.00 0.00 0.00 3.85
6097 6418 0.380733 TACGTCACTCCATAGCTGCG 59.619 55.000 0.00 0.00 0.00 5.18
6101 6422 2.688958 AGGAAGTACGTCACTCCATAGC 59.311 50.000 11.01 0.00 36.04 2.97
6110 6431 1.538512 CAGAACGGAGGAAGTACGTCA 59.461 52.381 11.01 0.00 40.31 4.35
6114 6435 5.717119 TGTATTTCAGAACGGAGGAAGTAC 58.283 41.667 0.00 0.00 35.53 2.73
6119 6440 4.322499 GGACTTGTATTTCAGAACGGAGGA 60.322 45.833 0.00 0.00 0.00 3.71
6124 6445 8.306680 TCTAAAAGGACTTGTATTTCAGAACG 57.693 34.615 0.00 0.00 0.00 3.95
6130 6451 9.449719 TGGAATCTCTAAAAGGACTTGTATTTC 57.550 33.333 0.00 0.00 0.00 2.17
6132 6453 9.981460 AATGGAATCTCTAAAAGGACTTGTATT 57.019 29.630 0.00 0.00 0.00 1.89
6177 6498 7.983307 ACGTCTTCTAGAATATAAGTTCGTGT 58.017 34.615 5.44 0.00 36.32 4.49
6178 6499 8.336806 AGACGTCTTCTAGAATATAAGTTCGTG 58.663 37.037 13.58 0.00 36.99 4.35
6179 6500 8.436046 AGACGTCTTCTAGAATATAAGTTCGT 57.564 34.615 13.58 9.21 38.16 3.85
6191 6512 7.834803 TCGGATGTATATAGACGTCTTCTAGA 58.165 38.462 25.44 10.47 40.33 2.43
6192 6513 8.476657 TTCGGATGTATATAGACGTCTTCTAG 57.523 38.462 25.44 11.15 40.33 2.43
6193 6514 8.880750 CATTCGGATGTATATAGACGTCTTCTA 58.119 37.037 25.44 15.86 41.29 2.10
6195 6516 7.528307 ACATTCGGATGTATATAGACGTCTTC 58.472 38.462 25.44 12.89 44.51 2.87
6198 6519 7.972527 ACTACATTCGGATGTATATAGACGTC 58.027 38.462 16.89 7.70 45.20 4.34
6199 6520 7.918536 ACTACATTCGGATGTATATAGACGT 57.081 36.000 16.89 6.89 45.20 4.34
6200 6521 9.622004 AAAACTACATTCGGATGTATATAGACG 57.378 33.333 16.89 6.27 45.20 4.18
6239 6560 9.199982 CCGTTTCTAAATACAAGTCTTTCTACA 57.800 33.333 0.00 0.00 0.00 2.74
6240 6561 9.415544 TCCGTTTCTAAATACAAGTCTTTCTAC 57.584 33.333 0.00 0.00 0.00 2.59
6241 6562 9.635520 CTCCGTTTCTAAATACAAGTCTTTCTA 57.364 33.333 0.00 0.00 0.00 2.10
6242 6563 7.603024 CCTCCGTTTCTAAATACAAGTCTTTCT 59.397 37.037 0.00 0.00 0.00 2.52
6243 6564 7.601508 TCCTCCGTTTCTAAATACAAGTCTTTC 59.398 37.037 0.00 0.00 0.00 2.62
6244 6565 7.447594 TCCTCCGTTTCTAAATACAAGTCTTT 58.552 34.615 0.00 0.00 0.00 2.52
6247 6568 6.872547 ACTTCCTCCGTTTCTAAATACAAGTC 59.127 38.462 0.00 0.00 0.00 3.01
6249 6570 7.008992 CGTACTTCCTCCGTTTCTAAATACAAG 59.991 40.741 0.00 0.00 0.00 3.16
6251 6572 6.071952 ACGTACTTCCTCCGTTTCTAAATACA 60.072 38.462 0.00 0.00 0.00 2.29
6252 6573 6.252228 CACGTACTTCCTCCGTTTCTAAATAC 59.748 42.308 0.00 0.00 31.46 1.89
6253 6574 6.324819 CACGTACTTCCTCCGTTTCTAAATA 58.675 40.000 0.00 0.00 31.46 1.40
6254 6575 5.166398 CACGTACTTCCTCCGTTTCTAAAT 58.834 41.667 0.00 0.00 31.46 1.40
6255 6576 4.549458 CACGTACTTCCTCCGTTTCTAAA 58.451 43.478 0.00 0.00 31.46 1.85
6259 6681 1.066136 GCACGTACTTCCTCCGTTTC 58.934 55.000 0.00 0.00 31.46 2.78
6281 6703 3.469008 TCAAAGTCAAGTGACCATCGT 57.531 42.857 7.82 0.00 45.85 3.73
6290 6712 2.852413 CGCGATCGTATCAAAGTCAAGT 59.148 45.455 17.81 0.00 0.00 3.16
6291 6713 3.061797 GTCGCGATCGTATCAAAGTCAAG 60.062 47.826 14.06 0.00 36.96 3.02
6292 6714 2.850060 GTCGCGATCGTATCAAAGTCAA 59.150 45.455 14.06 0.00 36.96 3.18
6293 6715 2.159490 TGTCGCGATCGTATCAAAGTCA 60.159 45.455 14.06 0.00 36.96 3.41
6294 6716 2.447250 TGTCGCGATCGTATCAAAGTC 58.553 47.619 14.06 0.00 36.96 3.01
6295 6717 2.554806 TGTCGCGATCGTATCAAAGT 57.445 45.000 14.06 0.00 36.96 2.66
6296 6718 2.408991 GCATGTCGCGATCGTATCAAAG 60.409 50.000 14.06 10.69 36.96 2.77
6297 6719 1.521006 GCATGTCGCGATCGTATCAAA 59.479 47.619 14.06 0.00 36.96 2.69
6298 6720 1.128513 GCATGTCGCGATCGTATCAA 58.871 50.000 14.06 0.00 36.96 2.57
6323 6745 0.324183 TAATGGTCGGGTCCGGTACA 60.324 55.000 9.68 6.78 40.25 2.90
6332 6754 7.477945 AATAACTAGTAGGATAATGGTCGGG 57.522 40.000 0.00 0.00 25.90 5.14
6344 6766 7.284034 TGGGAACTCGACTTAATAACTAGTAGG 59.716 40.741 0.00 0.00 0.00 3.18
6345 6767 8.218338 TGGGAACTCGACTTAATAACTAGTAG 57.782 38.462 0.00 0.00 0.00 2.57
6346 6768 8.579850 TTGGGAACTCGACTTAATAACTAGTA 57.420 34.615 0.00 0.00 0.00 1.82
6347 6769 7.472334 TTGGGAACTCGACTTAATAACTAGT 57.528 36.000 0.00 0.00 0.00 2.57
6369 6791 6.597280 AGCTAGCTCTAACCAGATTTCTTTTG 59.403 38.462 12.68 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.