Multiple sequence alignment - TraesCS4D01G318200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G318200 chr4D 100.000 6057 0 0 1 6057 482730457 482724401 0.000000e+00 11186.0
1 TraesCS4D01G318200 chr4B 93.817 1973 101 18 1850 3810 612334304 612332341 0.000000e+00 2948.0
2 TraesCS4D01G318200 chr4B 89.236 1087 60 25 794 1859 612340040 612338990 0.000000e+00 1306.0
3 TraesCS4D01G318200 chr4B 85.229 589 51 14 4537 5095 612332355 612331773 1.890000e-159 573.0
4 TraesCS4D01G318200 chr4B 83.281 640 63 26 5233 5862 612331649 612331044 3.190000e-152 549.0
5 TraesCS4D01G318200 chr4B 81.324 423 43 19 1 395 612345927 612345513 1.640000e-80 311.0
6 TraesCS4D01G318200 chr4B 91.346 104 8 1 381 484 612345496 612345394 2.280000e-29 141.0
7 TraesCS4D01G318200 chr4B 84.821 112 6 5 5950 6057 612330556 612330452 1.070000e-17 102.0
8 TraesCS4D01G318200 chr4B 94.737 38 1 1 734 771 612340073 612340109 2.360000e-04 58.4
9 TraesCS4D01G318200 chr5A 93.319 1407 74 15 2356 3749 659836763 659838162 0.000000e+00 2060.0
10 TraesCS4D01G318200 chr5A 89.192 1684 125 39 680 2321 659835091 659836759 0.000000e+00 2049.0
11 TraesCS4D01G318200 chr5A 90.992 766 53 8 4546 5297 659838204 659838967 0.000000e+00 1018.0
12 TraesCS4D01G318200 chr5A 89.137 313 30 3 183 492 659834273 659834584 2.650000e-103 387.0
13 TraesCS4D01G318200 chr5A 87.465 359 14 9 5709 6057 659839323 659839660 9.520000e-103 385.0
14 TraesCS4D01G318200 chr5A 92.949 156 10 1 1 156 659831631 659831785 6.110000e-55 226.0
15 TraesCS4D01G318200 chr5A 94.643 56 3 0 5473 5528 659839016 659839071 3.010000e-13 87.9
16 TraesCS4D01G318200 chr3A 94.606 723 35 4 3816 4536 28564414 28563694 0.000000e+00 1116.0
17 TraesCS4D01G318200 chr3A 86.565 722 86 8 3815 4531 698744719 698745434 0.000000e+00 785.0
18 TraesCS4D01G318200 chr7A 93.902 738 42 3 3801 4536 232374218 232373482 0.000000e+00 1110.0
19 TraesCS4D01G318200 chr7D 92.778 720 50 2 3815 4533 561453972 561454690 0.000000e+00 1040.0
20 TraesCS4D01G318200 chr5B 89.891 732 61 13 3817 4536 606750917 606750187 0.000000e+00 929.0
21 TraesCS4D01G318200 chr5B 89.984 629 54 7 3818 4439 46912135 46912761 0.000000e+00 804.0
22 TraesCS4D01G318200 chr6B 89.178 730 67 11 3818 4536 515193379 515192651 0.000000e+00 900.0
23 TraesCS4D01G318200 chr6B 88.435 735 72 12 3814 4536 702298702 702297969 0.000000e+00 874.0
24 TraesCS4D01G318200 chr6B 100.000 28 0 0 405 432 280101569 280101596 1.100000e-02 52.8
25 TraesCS4D01G318200 chr2D 86.740 724 89 5 3818 4536 95527144 95526423 0.000000e+00 798.0
26 TraesCS4D01G318200 chr6D 100.000 28 0 0 405 432 157330749 157330776 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G318200 chr4D 482724401 482730457 6056 True 11186.000000 11186 100.000000 1 6057 1 chr4D.!!$R1 6056
1 TraesCS4D01G318200 chr4B 612338990 612340040 1050 True 1306.000000 1306 89.236000 794 1859 1 chr4B.!!$R1 1065
2 TraesCS4D01G318200 chr4B 612330452 612334304 3852 True 1043.000000 2948 86.787000 1850 6057 4 chr4B.!!$R2 4207
3 TraesCS4D01G318200 chr4B 612345394 612345927 533 True 226.000000 311 86.335000 1 484 2 chr4B.!!$R3 483
4 TraesCS4D01G318200 chr5A 659831631 659839660 8029 False 887.557143 2060 91.099571 1 6057 7 chr5A.!!$F1 6056
5 TraesCS4D01G318200 chr3A 28563694 28564414 720 True 1116.000000 1116 94.606000 3816 4536 1 chr3A.!!$R1 720
6 TraesCS4D01G318200 chr3A 698744719 698745434 715 False 785.000000 785 86.565000 3815 4531 1 chr3A.!!$F1 716
7 TraesCS4D01G318200 chr7A 232373482 232374218 736 True 1110.000000 1110 93.902000 3801 4536 1 chr7A.!!$R1 735
8 TraesCS4D01G318200 chr7D 561453972 561454690 718 False 1040.000000 1040 92.778000 3815 4533 1 chr7D.!!$F1 718
9 TraesCS4D01G318200 chr5B 606750187 606750917 730 True 929.000000 929 89.891000 3817 4536 1 chr5B.!!$R1 719
10 TraesCS4D01G318200 chr5B 46912135 46912761 626 False 804.000000 804 89.984000 3818 4439 1 chr5B.!!$F1 621
11 TraesCS4D01G318200 chr6B 515192651 515193379 728 True 900.000000 900 89.178000 3818 4536 1 chr6B.!!$R1 718
12 TraesCS4D01G318200 chr6B 702297969 702298702 733 True 874.000000 874 88.435000 3814 4536 1 chr6B.!!$R2 722
13 TraesCS4D01G318200 chr2D 95526423 95527144 721 True 798.000000 798 86.740000 3818 4536 1 chr2D.!!$R1 718

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
526 3378 0.036294 TCTCTCTCTCTCCGTCGCAA 60.036 55.000 0.00 0.0 0.00 4.85 F
780 3681 0.738412 GGCCGCGAAAGTGCTACTAA 60.738 55.000 8.23 0.0 41.13 2.24 F
1101 4035 0.798776 CGTGGACCTGACTGATTTGC 59.201 55.000 0.00 0.0 0.00 3.68 F
1372 4309 1.067635 GCATTGCCTGATTTCGGTGTT 60.068 47.619 0.00 0.0 0.00 3.32 F
1585 4566 1.160137 GTGTGTTCAGGCTCATGTCC 58.840 55.000 0.00 0.0 0.00 4.02 F
3113 6113 0.106769 TTGCCAGTTTGACTGCTCCA 60.107 50.000 2.59 0.0 44.63 3.86 F
3114 6114 0.111061 TGCCAGTTTGACTGCTCCAT 59.889 50.000 2.59 0.0 44.63 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1551 4527 0.613777 CACACCCAGGAGACCCTAAC 59.386 60.000 0.00 0.00 42.02 2.34 R
2677 5672 0.379669 GATTGAATGTGCTGCTCCCG 59.620 55.000 0.00 0.00 0.00 5.14 R
2866 5865 1.339610 TGAATTTCCGGCAACCACAAG 59.660 47.619 0.00 0.00 0.00 3.16 R
2945 5944 3.044986 CAATTTCACAAAGTGGTCGCAG 58.955 45.455 0.00 0.00 33.17 5.18 R
3514 6522 2.133281 TCTGCCCAGATGTTCCAATG 57.867 50.000 0.00 0.00 31.41 2.82 R
4599 7633 0.105246 AAACATGGGGGCAGGTTTCA 60.105 50.000 0.00 0.00 34.53 2.69 R
5074 8138 0.179018 AGACCCTTCTTGTGTGCACC 60.179 55.000 15.69 6.37 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 87 4.142600 CGCTTGTAAAAGAGGGAAGAATGG 60.143 45.833 0.00 0.00 0.00 3.16
141 143 1.737363 GCCTCAAAAGAGTCTCGCGAT 60.737 52.381 10.36 0.00 0.00 4.58
223 2686 2.097791 GTCCTAAGCGACGATGAGACTT 59.902 50.000 0.00 0.00 0.00 3.01
263 2726 5.244178 AGGAAATGTTGTAACGACTCTCTCT 59.756 40.000 0.00 0.00 0.00 3.10
264 2727 5.927115 GGAAATGTTGTAACGACTCTCTCTT 59.073 40.000 0.00 0.00 0.00 2.85
268 2734 5.064558 TGTTGTAACGACTCTCTCTTCTCT 58.935 41.667 0.00 0.00 0.00 3.10
270 2736 3.927758 TGTAACGACTCTCTCTTCTCTCG 59.072 47.826 0.00 0.00 0.00 4.04
278 2744 2.769663 TCTCTCTTCTCTCGCCTACTCT 59.230 50.000 0.00 0.00 0.00 3.24
290 2756 2.948979 CGCCTACTCTCTTCAGATGAGT 59.051 50.000 12.02 9.07 42.74 3.41
319 2785 2.343101 TGAGCACCGAAATTTAGGTCG 58.657 47.619 18.92 15.04 39.00 4.79
334 2800 6.621316 TTTAGGTCGTGAATTTAACTTGCA 57.379 33.333 0.00 0.00 0.00 4.08
338 2804 7.391148 AGGTCGTGAATTTAACTTGCAATAT 57.609 32.000 0.00 0.00 0.00 1.28
341 2807 9.169468 GGTCGTGAATTTAACTTGCAATATATG 57.831 33.333 0.00 0.00 0.00 1.78
400 2897 6.464222 AGTTCATTCGACAAGGATTCTACAA 58.536 36.000 0.00 0.00 0.00 2.41
449 2946 4.637276 TGTTTTGCTAGTCAAATCGAGGA 58.363 39.130 11.44 0.00 43.53 3.71
460 2959 5.581085 AGTCAAATCGAGGACCTAAAAATCG 59.419 40.000 10.08 0.00 34.58 3.34
503 3355 5.464030 TCCAGAGGAAGTACTTTGTACAC 57.536 43.478 10.02 0.00 0.00 2.90
504 3356 4.897076 TCCAGAGGAAGTACTTTGTACACA 59.103 41.667 10.02 0.00 0.00 3.72
519 3371 4.776349 TGTACACATCTCTCTCTCTCTCC 58.224 47.826 0.00 0.00 0.00 3.71
520 3372 2.917933 ACACATCTCTCTCTCTCTCCG 58.082 52.381 0.00 0.00 0.00 4.63
521 3373 2.238646 ACACATCTCTCTCTCTCTCCGT 59.761 50.000 0.00 0.00 0.00 4.69
522 3374 2.872245 CACATCTCTCTCTCTCTCCGTC 59.128 54.545 0.00 0.00 0.00 4.79
523 3375 2.135139 CATCTCTCTCTCTCTCCGTCG 58.865 57.143 0.00 0.00 0.00 5.12
524 3376 0.179094 TCTCTCTCTCTCTCCGTCGC 60.179 60.000 0.00 0.00 0.00 5.19
525 3377 0.461163 CTCTCTCTCTCTCCGTCGCA 60.461 60.000 0.00 0.00 0.00 5.10
526 3378 0.036294 TCTCTCTCTCTCCGTCGCAA 60.036 55.000 0.00 0.00 0.00 4.85
527 3379 0.805614 CTCTCTCTCTCCGTCGCAAA 59.194 55.000 0.00 0.00 0.00 3.68
528 3380 1.200252 CTCTCTCTCTCCGTCGCAAAA 59.800 52.381 0.00 0.00 0.00 2.44
529 3381 1.611977 TCTCTCTCTCCGTCGCAAAAA 59.388 47.619 0.00 0.00 0.00 1.94
549 3401 6.916360 AAAAATCTCTCTCTCTCTCTGTGT 57.084 37.500 0.00 0.00 0.00 3.72
550 3402 6.916360 AAAATCTCTCTCTCTCTCTGTGTT 57.084 37.500 0.00 0.00 0.00 3.32
554 3406 4.078537 CTCTCTCTCTCTCTGTGTTTGGA 58.921 47.826 0.00 0.00 0.00 3.53
568 3420 5.886609 TGTGTTTGGATCTGATTCCCTTTA 58.113 37.500 0.00 0.00 34.67 1.85
571 3423 5.822519 TGTTTGGATCTGATTCCCTTTATCG 59.177 40.000 0.00 0.00 34.67 2.92
572 3424 4.623932 TGGATCTGATTCCCTTTATCGG 57.376 45.455 0.00 0.00 34.67 4.18
592 3444 3.954904 CGGTTTCCTTCTCCTCTGAGATA 59.045 47.826 6.17 0.00 46.75 1.98
593 3445 4.202070 CGGTTTCCTTCTCCTCTGAGATAC 60.202 50.000 6.17 0.00 46.75 2.24
594 3446 4.712337 GGTTTCCTTCTCCTCTGAGATACA 59.288 45.833 6.17 0.00 46.75 2.29
595 3447 5.187967 GGTTTCCTTCTCCTCTGAGATACAA 59.812 44.000 6.17 0.00 46.75 2.41
596 3448 6.337356 GTTTCCTTCTCCTCTGAGATACAAG 58.663 44.000 6.17 2.95 46.75 3.16
597 3449 5.199982 TCCTTCTCCTCTGAGATACAAGT 57.800 43.478 6.17 0.00 46.75 3.16
599 3451 6.019748 TCCTTCTCCTCTGAGATACAAGTTT 58.980 40.000 6.17 0.00 46.75 2.66
600 3452 6.498651 TCCTTCTCCTCTGAGATACAAGTTTT 59.501 38.462 6.17 0.00 46.75 2.43
601 3453 7.016661 TCCTTCTCCTCTGAGATACAAGTTTTT 59.983 37.037 6.17 0.00 46.75 1.94
628 3480 5.616488 GAGAATCCTCTGAGATACGTACC 57.384 47.826 6.17 0.00 36.50 3.34
629 3481 5.050126 AGAATCCTCTGAGATACGTACCA 57.950 43.478 6.17 0.00 0.00 3.25
630 3482 4.822896 AGAATCCTCTGAGATACGTACCAC 59.177 45.833 6.17 0.00 0.00 4.16
631 3483 8.203893 GAGAATCCTCTGAGATACGTACCACG 62.204 50.000 6.17 0.00 40.82 4.94
651 3503 1.689582 GCCCACCCTAGCCTAGTGT 60.690 63.158 0.00 0.00 0.00 3.55
655 3507 2.358932 CCCACCCTAGCCTAGTGTAAGA 60.359 54.545 0.00 0.00 0.00 2.10
660 3512 4.139038 CCCTAGCCTAGTGTAAGAGAGAC 58.861 52.174 0.00 0.00 0.00 3.36
680 3532 7.114754 AGAGACAAATTATGCTGAAATCCAGA 58.885 34.615 0.00 0.00 45.78 3.86
681 3533 7.282675 AGAGACAAATTATGCTGAAATCCAGAG 59.717 37.037 0.00 0.00 45.78 3.35
682 3534 7.114754 AGACAAATTATGCTGAAATCCAGAGA 58.885 34.615 0.00 0.00 45.78 3.10
683 3535 7.282675 AGACAAATTATGCTGAAATCCAGAGAG 59.717 37.037 0.00 0.00 45.78 3.20
685 3537 8.049117 ACAAATTATGCTGAAATCCAGAGAGTA 58.951 33.333 0.00 0.00 45.78 2.59
687 3539 6.798427 TTATGCTGAAATCCAGAGAGTAGT 57.202 37.500 0.00 0.00 45.78 2.73
688 3540 5.690464 ATGCTGAAATCCAGAGAGTAGTT 57.310 39.130 0.00 0.00 45.78 2.24
765 3666 2.108362 GTCTATCGGGTTGGGCCG 59.892 66.667 0.00 0.00 38.44 6.13
777 3678 3.497031 GGGCCGCGAAAGTGCTAC 61.497 66.667 8.23 0.00 41.13 3.58
778 3679 2.434359 GGCCGCGAAAGTGCTACT 60.434 61.111 8.23 0.00 41.13 2.57
779 3680 1.153706 GGCCGCGAAAGTGCTACTA 60.154 57.895 8.23 0.00 41.13 1.82
780 3681 0.738412 GGCCGCGAAAGTGCTACTAA 60.738 55.000 8.23 0.00 41.13 2.24
782 3683 1.258197 GCCGCGAAAGTGCTACTAATC 59.742 52.381 8.23 0.00 41.13 1.75
783 3684 2.810650 CCGCGAAAGTGCTACTAATCT 58.189 47.619 8.23 0.00 41.13 2.40
784 3685 3.187700 CCGCGAAAGTGCTACTAATCTT 58.812 45.455 8.23 0.00 41.13 2.40
785 3686 3.243177 CCGCGAAAGTGCTACTAATCTTC 59.757 47.826 8.23 0.00 41.13 2.87
786 3687 3.243177 CGCGAAAGTGCTACTAATCTTCC 59.757 47.826 0.00 0.00 33.37 3.46
820 3733 1.750930 CAGGCCAGTGTCACTCTGT 59.249 57.895 5.01 0.00 0.00 3.41
826 3739 0.941463 CAGTGTCACTCTGTCACGGC 60.941 60.000 1.37 0.00 40.45 5.68
961 3879 4.589675 TCCAAACCCCACCCACGC 62.590 66.667 0.00 0.00 0.00 5.34
1101 4035 0.798776 CGTGGACCTGACTGATTTGC 59.201 55.000 0.00 0.00 0.00 3.68
1305 4239 3.064545 CCAATCGATGCTTTGGAGAGTTC 59.935 47.826 9.49 0.00 44.23 3.01
1329 4263 2.112279 TGACTTGTCTGGGGGTAGTT 57.888 50.000 2.35 0.00 0.00 2.24
1353 4290 6.705863 ATGGATAGAAATTGTTTCCAGAGC 57.294 37.500 8.14 0.00 39.68 4.09
1372 4309 1.067635 GCATTGCCTGATTTCGGTGTT 60.068 47.619 0.00 0.00 0.00 3.32
1388 4325 2.865551 GGTGTTTGCTGTGAATTTGTGG 59.134 45.455 0.00 0.00 0.00 4.17
1432 4406 5.591472 TGAAATGTTGCTCTCTAATCCATGG 59.409 40.000 4.97 4.97 0.00 3.66
1444 4419 7.500992 TCTCTAATCCATGGACAGTTGATTAC 58.499 38.462 18.99 0.00 0.00 1.89
1479 4454 2.129607 GATTTGGCAAGTGCAGTTGTG 58.870 47.619 29.87 11.96 44.36 3.33
1491 4466 1.268234 GCAGTTGTGACTTGTGAGTGC 60.268 52.381 0.00 0.00 35.88 4.40
1514 4490 3.193479 CGAATTTTAGGCCCTTTGAGCTT 59.807 43.478 0.00 0.00 0.00 3.74
1533 4509 4.584743 AGCTTTGTTTAGGTTAAGCAGCTT 59.415 37.500 13.46 13.46 44.08 3.74
1535 4511 5.447624 TTTGTTTAGGTTAAGCAGCTTCC 57.552 39.130 12.07 7.93 34.13 3.46
1547 4523 3.813443 AGCAGCTTCCGACATTGATTAT 58.187 40.909 0.00 0.00 0.00 1.28
1551 4527 2.480419 GCTTCCGACATTGATTATCCGG 59.520 50.000 0.00 0.00 38.41 5.14
1585 4566 1.160137 GTGTGTTCAGGCTCATGTCC 58.840 55.000 0.00 0.00 0.00 4.02
1663 4644 3.520569 GTTGGTGTGCAATTGAAGTTGT 58.479 40.909 10.34 0.00 0.00 3.32
1668 4649 2.159128 TGTGCAATTGAAGTTGTGGTGG 60.159 45.455 10.34 0.00 0.00 4.61
1705 4692 2.484417 GCTGTAGTGCTCTGTGGCATAT 60.484 50.000 0.00 0.00 44.34 1.78
1812 4803 5.792741 TGTTAGCAAGATTGGAAATTTGGG 58.207 37.500 0.00 0.00 0.00 4.12
1827 4818 3.254617 GGGTCCAGTTTCCGGGGT 61.255 66.667 0.00 0.00 0.00 4.95
1848 4839 5.294552 GGGTTTTACTGATTCGAATCCTCAG 59.705 44.000 30.16 25.06 41.69 3.35
1906 4898 2.009774 GCTAGTGGATCGCACAACATT 58.990 47.619 14.31 0.00 0.00 2.71
1961 4953 6.783977 TGTAGTCACTCCTTTTTCCTACCTTA 59.216 38.462 0.00 0.00 0.00 2.69
1975 4967 4.225042 TCCTACCTTACAGTCACTACGGTA 59.775 45.833 0.00 0.00 35.53 4.02
2014 5006 4.441356 GGAAAAGATTGTGTGCTTGTTGGA 60.441 41.667 0.00 0.00 0.00 3.53
2047 5039 2.294233 GCACATGAAACTGAAGCCTTCA 59.706 45.455 7.00 7.00 38.17 3.02
2094 5086 8.426489 GGAGGTAATGTAACATTATGGTAGTGA 58.574 37.037 0.00 0.00 0.00 3.41
2101 5093 7.625469 TGTAACATTATGGTAGTGATTCCACA 58.375 34.615 0.00 0.00 45.54 4.17
2102 5094 7.551262 TGTAACATTATGGTAGTGATTCCACAC 59.449 37.037 0.00 0.00 45.54 3.82
2104 5096 2.024176 ATGGTAGTGATTCCACACGC 57.976 50.000 0.00 0.00 45.54 5.34
2118 5110 3.006752 TCCACACGCTCATATATGATGCA 59.993 43.478 24.34 0.00 36.02 3.96
2125 5118 4.390909 CGCTCATATATGATGCATGTGTGT 59.609 41.667 24.34 0.00 36.02 3.72
2128 5121 7.360269 CGCTCATATATGATGCATGTGTGTAAA 60.360 37.037 24.34 0.81 36.02 2.01
2290 5283 1.661341 CTCCAGCAGCTTATGTGACC 58.339 55.000 0.00 0.00 0.00 4.02
2321 5314 5.258456 TGACTGTCACTTAAAAGACTCGT 57.742 39.130 6.36 5.73 35.81 4.18
2337 5330 2.553602 ACTCGTCATGCTGCAAATTCAA 59.446 40.909 6.36 0.00 0.00 2.69
2353 5346 6.479990 GCAAATTCAAGGCTTGTTTCTTTAGT 59.520 34.615 25.39 0.00 0.00 2.24
2382 5375 9.826574 TGTACAATCTGTTCTGTACTTTTAACT 57.173 29.630 12.19 0.00 45.33 2.24
2387 5380 9.555727 AATCTGTTCTGTACTTTTAACTAGCAA 57.444 29.630 0.00 0.00 0.00 3.91
2413 5407 6.863126 GTCATGTTCTTTGGAATAACACTTGG 59.137 38.462 0.00 0.00 36.06 3.61
2552 5546 6.231211 AGTAATATTTTCTGTATCCTGCGGG 58.769 40.000 4.71 4.71 0.00 6.13
2618 5612 5.569059 GTCGTGTTAAAATTGCTCTGGAATG 59.431 40.000 0.00 0.00 0.00 2.67
2669 5664 2.923605 TGTTGTTTTTGTGTCGGGAC 57.076 45.000 0.00 0.00 0.00 4.46
2677 5672 2.806608 TTGTGTCGGGACTAAGTGTC 57.193 50.000 0.00 0.00 44.63 3.67
2719 5714 4.633565 CCTCTGCAGTTCCAACTTCTTATC 59.366 45.833 14.67 0.00 37.08 1.75
2743 5738 1.342174 CATATCACTGGGCATTTGGGC 59.658 52.381 0.00 0.00 42.44 5.36
2814 5809 5.233988 ACTCAAGTGAGACACTAATTCTGC 58.766 41.667 15.15 0.00 44.62 4.26
2866 5865 4.854291 CCATAGCATCGAAGATAGTTCGTC 59.146 45.833 7.01 0.00 45.12 4.20
2877 5876 1.873698 TAGTTCGTCTTGTGGTTGCC 58.126 50.000 0.00 0.00 0.00 4.52
2945 5944 6.730960 AATGGCATTTCATTTCACATGTTC 57.269 33.333 6.96 0.00 34.01 3.18
2948 5947 4.092383 GGCATTTCATTTCACATGTTCTGC 59.908 41.667 0.00 0.00 0.00 4.26
2952 5951 2.483877 TCATTTCACATGTTCTGCGACC 59.516 45.455 0.00 0.00 0.00 4.79
2972 5971 4.944048 ACCACTTTGTGAAATTGCTTACC 58.056 39.130 0.00 0.00 35.23 2.85
2975 5974 4.445385 CACTTTGTGAAATTGCTTACCAGC 59.555 41.667 0.00 0.00 40.32 4.85
3029 6028 5.441718 AAGATCAACCAAGGATAGCTGAA 57.558 39.130 0.00 0.00 0.00 3.02
3066 6065 6.554982 ACTGGATATAATGCTGACTCAGGTTA 59.445 38.462 8.17 0.00 31.21 2.85
3102 6102 4.769345 TTCCCTTCAAAATTTGCCAGTT 57.231 36.364 0.00 0.00 0.00 3.16
3113 6113 0.106769 TTGCCAGTTTGACTGCTCCA 60.107 50.000 2.59 0.00 44.63 3.86
3114 6114 0.111061 TGCCAGTTTGACTGCTCCAT 59.889 50.000 2.59 0.00 44.63 3.41
3116 6116 1.615392 GCCAGTTTGACTGCTCCATTT 59.385 47.619 2.59 0.00 44.63 2.32
3125 6125 3.953612 TGACTGCTCCATTTTCTGTTGTT 59.046 39.130 0.00 0.00 0.00 2.83
3262 6263 9.074576 TGATGCTGATGAATAGCTATTGAATTT 57.925 29.630 23.51 0.17 41.66 1.82
3321 6329 4.768583 TGTGCATGCATGACTAACTCATA 58.231 39.130 30.64 11.70 37.53 2.15
3514 6522 6.563422 TGCAATAAATTCTGTATGCAGGTTC 58.437 36.000 11.15 0.00 42.78 3.62
3644 6652 0.900421 ACCGAACAGCCTAGGTAACC 59.100 55.000 11.31 0.00 34.83 2.85
3647 6655 1.485066 CGAACAGCCTAGGTAACCCAT 59.515 52.381 11.31 0.00 37.17 4.00
3693 6702 8.850156 GCCTTAGTGGTAATGATGATATTGTTT 58.150 33.333 0.00 0.00 38.35 2.83
3806 6819 5.870706 GGCTAGATAATCCTTACTTGCCTT 58.129 41.667 0.00 0.00 43.73 4.35
3807 6820 6.299922 GGCTAGATAATCCTTACTTGCCTTT 58.700 40.000 0.00 0.00 43.73 3.11
3808 6821 6.428465 GGCTAGATAATCCTTACTTGCCTTTC 59.572 42.308 0.00 0.00 43.73 2.62
3809 6822 7.220740 GCTAGATAATCCTTACTTGCCTTTCT 58.779 38.462 0.00 0.00 0.00 2.52
3810 6823 7.717436 GCTAGATAATCCTTACTTGCCTTTCTT 59.283 37.037 0.00 0.00 0.00 2.52
3811 6824 9.620259 CTAGATAATCCTTACTTGCCTTTCTTT 57.380 33.333 0.00 0.00 0.00 2.52
3812 6825 8.512966 AGATAATCCTTACTTGCCTTTCTTTC 57.487 34.615 0.00 0.00 0.00 2.62
3867 6881 3.699538 CACCCCAACTTTATAGAAAGCCC 59.300 47.826 9.73 0.00 45.16 5.19
3991 7012 6.362248 AGTTTTAGGTAGTTCAAGCCAAGAA 58.638 36.000 0.00 0.00 0.00 2.52
4000 7022 2.083774 TCAAGCCAAGAAACATAGCCG 58.916 47.619 0.00 0.00 0.00 5.52
4070 7100 2.031163 AGAACACAGCCCAGCGAC 59.969 61.111 0.00 0.00 0.00 5.19
4079 7110 4.473520 CCCAGCGACGCCCTTGAT 62.474 66.667 17.79 0.00 0.00 2.57
4081 7115 1.592669 CCAGCGACGCCCTTGATAG 60.593 63.158 17.79 0.00 0.00 2.08
4085 7119 0.666913 GCGACGCCCTTGATAGTAGA 59.333 55.000 9.14 0.00 0.00 2.59
4244 7278 3.067601 ACACATCGTATACTTCGCCATCA 59.932 43.478 0.56 0.00 0.00 3.07
4541 7575 8.638629 TCTCTAGTTAAGCTCTTGTTCTTACT 57.361 34.615 0.00 0.00 0.00 2.24
4542 7576 9.080097 TCTCTAGTTAAGCTCTTGTTCTTACTT 57.920 33.333 0.00 0.00 0.00 2.24
4543 7577 9.134734 CTCTAGTTAAGCTCTTGTTCTTACTTG 57.865 37.037 0.00 0.00 0.00 3.16
4544 7578 6.546972 AGTTAAGCTCTTGTTCTTACTTGC 57.453 37.500 0.00 0.00 0.00 4.01
4545 7579 5.470437 AGTTAAGCTCTTGTTCTTACTTGCC 59.530 40.000 0.00 0.00 0.00 4.52
4546 7580 3.778954 AGCTCTTGTTCTTACTTGCCT 57.221 42.857 0.00 0.00 0.00 4.75
4547 7581 4.092116 AGCTCTTGTTCTTACTTGCCTT 57.908 40.909 0.00 0.00 0.00 4.35
4559 7593 3.567478 ACTTGCCTTTCTGTCTTGTCT 57.433 42.857 0.00 0.00 0.00 3.41
4653 7687 6.402766 GGAATCAAGATAGATACGAGACTCGG 60.403 46.154 27.39 10.77 45.59 4.63
4691 7725 5.741388 ACTTGAAGCGAAATCCATATGTC 57.259 39.130 1.24 0.00 0.00 3.06
4730 7764 4.463050 AACACCCTTGTTATCCAGGAAA 57.537 40.909 0.00 0.00 44.53 3.13
4803 7837 4.501571 GGAATCGCTGTCATGGTATGTACT 60.502 45.833 0.00 0.00 0.00 2.73
4818 7855 1.757118 TGTACTGGTAGCTCTGCATCC 59.243 52.381 0.00 0.00 0.00 3.51
4819 7856 1.757118 GTACTGGTAGCTCTGCATCCA 59.243 52.381 0.00 0.00 34.06 3.41
4823 7860 0.471617 GGTAGCTCTGCATCCACCAT 59.528 55.000 0.00 0.00 0.00 3.55
4856 7893 6.472016 TCTATCAATGGTTTGTTCTGCTACA 58.528 36.000 0.00 0.00 34.32 2.74
4865 7902 6.142817 GGTTTGTTCTGCTACATTTACACAG 58.857 40.000 0.00 0.00 0.00 3.66
4934 7974 3.190118 GCTCCATTCCTCTGTTCTGTTTG 59.810 47.826 0.00 0.00 0.00 2.93
4987 8048 5.683681 TGACAAGCATATCCATGTGTATGT 58.316 37.500 13.14 5.48 34.40 2.29
5012 8073 2.262423 ACAGCTCAACTTGAGGAACC 57.738 50.000 18.53 3.95 44.43 3.62
5032 8093 0.111061 TGGAATGCAGCACCTTGAGT 59.889 50.000 0.00 0.00 0.00 3.41
5090 8154 1.903404 GGGGTGCACACAAGAAGGG 60.903 63.158 22.94 0.00 0.00 3.95
5095 8159 0.179020 TGCACACAAGAAGGGTCTGG 60.179 55.000 0.00 0.00 33.05 3.86
5099 8163 1.597742 CACAAGAAGGGTCTGGTGTG 58.402 55.000 3.49 0.00 46.86 3.82
5109 8173 0.458025 GTCTGGTGTGGCGCTACTAC 60.458 60.000 24.82 19.07 0.00 2.73
5121 8191 3.275400 CGCTACTACGCAGATCTTCAT 57.725 47.619 0.00 0.00 0.00 2.57
5122 8192 3.230355 CGCTACTACGCAGATCTTCATC 58.770 50.000 0.00 0.00 0.00 2.92
5136 8206 7.009179 AGATCTTCATCTGTAAGGTTTCACA 57.991 36.000 0.00 0.00 38.03 3.58
5144 8214 3.207778 TGTAAGGTTTCACAAGGGAACG 58.792 45.455 0.00 0.00 0.00 3.95
5146 8216 2.721425 AGGTTTCACAAGGGAACGAA 57.279 45.000 0.00 0.00 0.00 3.85
5157 8227 4.274950 ACAAGGGAACGAACTATTGTGTTG 59.725 41.667 0.00 0.00 30.20 3.33
5227 8303 6.098838 AGCTCATTGTTAGATGTGATGACCTA 59.901 38.462 0.00 0.00 0.00 3.08
5297 8479 4.320608 TCATGCTTGTTTTCCCAGTTTC 57.679 40.909 0.00 0.00 0.00 2.78
5298 8480 3.069443 TCATGCTTGTTTTCCCAGTTTCC 59.931 43.478 0.00 0.00 0.00 3.13
5299 8481 2.461695 TGCTTGTTTTCCCAGTTTCCA 58.538 42.857 0.00 0.00 0.00 3.53
5300 8482 3.037549 TGCTTGTTTTCCCAGTTTCCAT 58.962 40.909 0.00 0.00 0.00 3.41
5301 8483 3.181467 TGCTTGTTTTCCCAGTTTCCATG 60.181 43.478 0.00 0.00 0.00 3.66
5302 8484 3.069443 GCTTGTTTTCCCAGTTTCCATGA 59.931 43.478 0.00 0.00 0.00 3.07
5303 8485 4.797275 GCTTGTTTTCCCAGTTTCCATGAG 60.797 45.833 0.00 0.00 0.00 2.90
5304 8486 2.627699 TGTTTTCCCAGTTTCCATGAGC 59.372 45.455 0.00 0.00 0.00 4.26
5305 8487 2.893489 GTTTTCCCAGTTTCCATGAGCT 59.107 45.455 0.00 0.00 0.00 4.09
5306 8488 2.205022 TTCCCAGTTTCCATGAGCTG 57.795 50.000 0.00 0.00 0.00 4.24
5307 8489 1.361204 TCCCAGTTTCCATGAGCTGA 58.639 50.000 0.00 0.00 0.00 4.26
5308 8490 1.918262 TCCCAGTTTCCATGAGCTGAT 59.082 47.619 0.00 0.00 0.00 2.90
5309 8491 2.022195 CCCAGTTTCCATGAGCTGATG 58.978 52.381 6.14 6.14 0.00 3.07
5310 8492 1.404391 CCAGTTTCCATGAGCTGATGC 59.596 52.381 7.76 0.00 40.05 3.91
5311 8493 1.063616 CAGTTTCCATGAGCTGATGCG 59.936 52.381 7.76 1.62 45.42 4.73
5312 8494 1.089920 GTTTCCATGAGCTGATGCGT 58.910 50.000 7.76 0.00 45.42 5.24
5313 8495 1.470098 GTTTCCATGAGCTGATGCGTT 59.530 47.619 7.76 0.00 45.42 4.84
5314 8496 2.677836 GTTTCCATGAGCTGATGCGTTA 59.322 45.455 7.76 0.00 45.42 3.18
5315 8497 2.916702 TCCATGAGCTGATGCGTTAT 57.083 45.000 7.76 0.00 45.42 1.89
5316 8498 3.198409 TCCATGAGCTGATGCGTTATT 57.802 42.857 7.76 0.00 45.42 1.40
5317 8499 3.133691 TCCATGAGCTGATGCGTTATTC 58.866 45.455 7.76 0.00 45.42 1.75
5318 8500 2.874086 CCATGAGCTGATGCGTTATTCA 59.126 45.455 7.76 0.00 45.42 2.57
5319 8501 3.059120 CCATGAGCTGATGCGTTATTCAG 60.059 47.826 7.76 0.00 45.42 3.02
5320 8502 3.525268 TGAGCTGATGCGTTATTCAGA 57.475 42.857 0.00 0.00 45.42 3.27
5321 8503 3.860641 TGAGCTGATGCGTTATTCAGAA 58.139 40.909 0.00 0.00 45.42 3.02
5322 8504 3.618594 TGAGCTGATGCGTTATTCAGAAC 59.381 43.478 0.00 0.00 45.42 3.01
5323 8505 3.866651 AGCTGATGCGTTATTCAGAACT 58.133 40.909 4.21 0.00 45.42 3.01
5324 8506 4.256920 AGCTGATGCGTTATTCAGAACTT 58.743 39.130 4.21 0.00 45.42 2.66
5325 8507 4.093998 AGCTGATGCGTTATTCAGAACTTG 59.906 41.667 4.21 0.00 45.42 3.16
5326 8508 4.142816 GCTGATGCGTTATTCAGAACTTGT 60.143 41.667 4.21 0.00 32.38 3.16
5327 8509 5.281693 TGATGCGTTATTCAGAACTTGTG 57.718 39.130 0.00 0.00 0.00 3.33
5328 8510 4.754618 TGATGCGTTATTCAGAACTTGTGT 59.245 37.500 0.00 0.00 0.00 3.72
5329 8511 5.238432 TGATGCGTTATTCAGAACTTGTGTT 59.762 36.000 0.00 0.00 39.42 3.32
5330 8512 5.493133 TGCGTTATTCAGAACTTGTGTTT 57.507 34.783 0.00 0.00 36.39 2.83
5331 8513 5.885881 TGCGTTATTCAGAACTTGTGTTTT 58.114 33.333 0.00 0.00 36.39 2.43
5332 8514 5.741510 TGCGTTATTCAGAACTTGTGTTTTG 59.258 36.000 0.00 0.00 38.97 2.44
5333 8515 5.741982 GCGTTATTCAGAACTTGTGTTTTGT 59.258 36.000 0.00 0.00 38.79 2.83
5334 8516 6.252655 GCGTTATTCAGAACTTGTGTTTTGTT 59.747 34.615 0.00 0.00 38.79 2.83
5335 8517 7.513041 GCGTTATTCAGAACTTGTGTTTTGTTC 60.513 37.037 0.00 0.00 38.79 3.18
5337 8519 9.010366 GTTATTCAGAACTTGTGTTTTGTTCTC 57.990 33.333 4.84 0.00 45.67 2.87
5338 8520 6.567687 TTCAGAACTTGTGTTTTGTTCTCA 57.432 33.333 4.84 0.00 45.67 3.27
5339 8521 6.757897 TCAGAACTTGTGTTTTGTTCTCAT 57.242 33.333 4.84 0.00 45.67 2.90
5340 8522 7.156876 TCAGAACTTGTGTTTTGTTCTCATT 57.843 32.000 4.84 0.00 45.67 2.57
5341 8523 8.275015 TCAGAACTTGTGTTTTGTTCTCATTA 57.725 30.769 4.84 0.00 45.67 1.90
5342 8524 8.397906 TCAGAACTTGTGTTTTGTTCTCATTAG 58.602 33.333 4.84 0.00 45.67 1.73
5343 8525 8.184192 CAGAACTTGTGTTTTGTTCTCATTAGT 58.816 33.333 4.84 0.00 45.67 2.24
5344 8526 8.184192 AGAACTTGTGTTTTGTTCTCATTAGTG 58.816 33.333 0.00 0.00 44.65 2.74
5345 8527 7.391148 ACTTGTGTTTTGTTCTCATTAGTGT 57.609 32.000 0.00 0.00 0.00 3.55
5346 8528 7.826690 ACTTGTGTTTTGTTCTCATTAGTGTT 58.173 30.769 0.00 0.00 0.00 3.32
5347 8529 8.952278 ACTTGTGTTTTGTTCTCATTAGTGTTA 58.048 29.630 0.00 0.00 0.00 2.41
5348 8530 9.438291 CTTGTGTTTTGTTCTCATTAGTGTTAG 57.562 33.333 0.00 0.00 0.00 2.34
5349 8531 7.414436 TGTGTTTTGTTCTCATTAGTGTTAGC 58.586 34.615 0.00 0.00 0.00 3.09
5350 8532 7.066404 TGTGTTTTGTTCTCATTAGTGTTAGCA 59.934 33.333 0.00 0.00 0.00 3.49
5351 8533 7.913297 GTGTTTTGTTCTCATTAGTGTTAGCAA 59.087 33.333 0.00 0.00 0.00 3.91
5352 8534 8.462811 TGTTTTGTTCTCATTAGTGTTAGCAAA 58.537 29.630 0.00 0.00 0.00 3.68
5353 8535 9.463443 GTTTTGTTCTCATTAGTGTTAGCAAAT 57.537 29.630 0.00 0.00 0.00 2.32
5354 8536 9.462174 TTTTGTTCTCATTAGTGTTAGCAAATG 57.538 29.630 0.00 0.00 0.00 2.32
5355 8537 7.744087 TGTTCTCATTAGTGTTAGCAAATGT 57.256 32.000 4.52 0.00 32.43 2.71
5356 8538 8.840833 TGTTCTCATTAGTGTTAGCAAATGTA 57.159 30.769 4.52 0.00 32.43 2.29
5357 8539 9.448438 TGTTCTCATTAGTGTTAGCAAATGTAT 57.552 29.630 4.52 0.00 32.43 2.29
5358 8540 9.922305 GTTCTCATTAGTGTTAGCAAATGTATC 57.078 33.333 4.52 0.00 32.43 2.24
5359 8541 9.665719 TTCTCATTAGTGTTAGCAAATGTATCA 57.334 29.630 4.52 0.00 32.43 2.15
5360 8542 9.317936 TCTCATTAGTGTTAGCAAATGTATCAG 57.682 33.333 4.52 0.00 32.43 2.90
5361 8543 9.102757 CTCATTAGTGTTAGCAAATGTATCAGT 57.897 33.333 4.52 0.00 32.43 3.41
5362 8544 9.098355 TCATTAGTGTTAGCAAATGTATCAGTC 57.902 33.333 4.52 0.00 32.43 3.51
5363 8545 9.102757 CATTAGTGTTAGCAAATGTATCAGTCT 57.897 33.333 0.00 0.00 0.00 3.24
5364 8546 9.672673 ATTAGTGTTAGCAAATGTATCAGTCTT 57.327 29.630 0.00 0.00 0.00 3.01
5365 8547 7.986085 AGTGTTAGCAAATGTATCAGTCTTT 57.014 32.000 0.00 0.00 0.00 2.52
5366 8548 8.396272 AGTGTTAGCAAATGTATCAGTCTTTT 57.604 30.769 0.00 0.00 0.00 2.27
5367 8549 9.502091 AGTGTTAGCAAATGTATCAGTCTTTTA 57.498 29.630 0.00 0.00 0.00 1.52
5368 8550 9.543018 GTGTTAGCAAATGTATCAGTCTTTTAC 57.457 33.333 0.00 0.00 0.00 2.01
5369 8551 8.440059 TGTTAGCAAATGTATCAGTCTTTTACG 58.560 33.333 0.00 0.00 0.00 3.18
5370 8552 8.653338 GTTAGCAAATGTATCAGTCTTTTACGA 58.347 33.333 0.00 0.00 0.00 3.43
5371 8553 7.667043 AGCAAATGTATCAGTCTTTTACGAA 57.333 32.000 0.00 0.00 0.00 3.85
5372 8554 8.094798 AGCAAATGTATCAGTCTTTTACGAAA 57.905 30.769 0.00 0.00 0.00 3.46
5373 8555 8.015658 AGCAAATGTATCAGTCTTTTACGAAAC 58.984 33.333 0.00 0.00 0.00 2.78
5374 8556 7.801315 GCAAATGTATCAGTCTTTTACGAAACA 59.199 33.333 0.00 0.00 0.00 2.83
5375 8557 9.318041 CAAATGTATCAGTCTTTTACGAAACAG 57.682 33.333 0.00 0.00 0.00 3.16
5376 8558 8.827177 AATGTATCAGTCTTTTACGAAACAGA 57.173 30.769 0.00 0.00 0.00 3.41
5377 8559 9.436957 AATGTATCAGTCTTTTACGAAACAGAT 57.563 29.630 0.00 0.00 0.00 2.90
5378 8560 8.827177 TGTATCAGTCTTTTACGAAACAGATT 57.173 30.769 0.00 0.00 0.00 2.40
5379 8561 8.708742 TGTATCAGTCTTTTACGAAACAGATTG 58.291 33.333 0.00 0.00 0.00 2.67
5380 8562 7.730364 ATCAGTCTTTTACGAAACAGATTGT 57.270 32.000 0.00 0.00 0.00 2.71
5381 8563 6.943981 TCAGTCTTTTACGAAACAGATTGTG 58.056 36.000 0.00 0.00 0.00 3.33
5382 8564 6.537301 TCAGTCTTTTACGAAACAGATTGTGT 59.463 34.615 0.00 0.00 43.24 3.72
5407 8589 0.904649 TGTGGTATGCCTGTCTGGAG 59.095 55.000 0.16 0.00 38.35 3.86
5415 8597 1.222936 CCTGTCTGGAGGCACATCC 59.777 63.158 0.00 0.00 40.03 3.51
5448 8630 2.594303 CGGAGCAAACACTGGCCA 60.594 61.111 4.71 4.71 0.00 5.36
5449 8631 2.620112 CGGAGCAAACACTGGCCAG 61.620 63.158 31.60 31.60 0.00 4.85
5450 8632 2.270986 GGAGCAAACACTGGCCAGG 61.271 63.158 35.42 25.43 0.00 4.45
5451 8633 1.228245 GAGCAAACACTGGCCAGGA 60.228 57.895 35.42 0.00 0.00 3.86
5452 8634 0.823356 GAGCAAACACTGGCCAGGAA 60.823 55.000 35.42 0.00 0.00 3.36
5453 8635 0.178953 AGCAAACACTGGCCAGGAAT 60.179 50.000 35.42 18.13 0.00 3.01
5460 8642 0.329596 ACTGGCCAGGAATCAGGTTC 59.670 55.000 35.42 0.00 36.04 3.62
5471 8653 3.955471 GAATCAGGTTCCAGAATGTCCA 58.045 45.455 0.00 0.00 0.00 4.02
5496 8678 3.812053 AGCATATTCAGATTCTCGTTGGC 59.188 43.478 0.00 0.00 0.00 4.52
5553 8739 7.974501 TGTTATTTTTGTGTTAAGAAAAGGCGA 59.025 29.630 0.00 0.00 30.97 5.54
5558 8744 3.188460 TGTGTTAAGAAAAGGCGATGCTC 59.812 43.478 0.00 0.00 0.00 4.26
5568 8754 2.584418 CGATGCTCCCTGACGCTG 60.584 66.667 0.00 0.00 0.00 5.18
5570 8756 1.520342 GATGCTCCCTGACGCTGAC 60.520 63.158 0.00 0.00 0.00 3.51
5574 8760 3.288308 CTCCCTGACGCTGACGCTT 62.288 63.158 0.00 0.00 45.53 4.68
5575 8761 2.357517 CCCTGACGCTGACGCTTT 60.358 61.111 0.00 0.00 45.53 3.51
5576 8762 2.671177 CCCTGACGCTGACGCTTTG 61.671 63.158 0.00 0.00 45.53 2.77
5577 8763 1.956170 CCTGACGCTGACGCTTTGT 60.956 57.895 0.00 0.00 45.53 2.83
5578 8764 1.498865 CCTGACGCTGACGCTTTGTT 61.499 55.000 0.00 0.00 45.53 2.83
5579 8765 0.304705 CTGACGCTGACGCTTTGTTT 59.695 50.000 0.00 0.00 45.53 2.83
5580 8766 0.027455 TGACGCTGACGCTTTGTTTG 59.973 50.000 0.00 0.00 45.53 2.93
5581 8767 1.262166 GACGCTGACGCTTTGTTTGC 61.262 55.000 0.00 0.00 45.53 3.68
5582 8768 1.009675 CGCTGACGCTTTGTTTGCT 60.010 52.632 0.00 0.00 0.00 3.91
5583 8769 0.234625 CGCTGACGCTTTGTTTGCTA 59.765 50.000 0.00 0.00 0.00 3.49
5584 8770 1.674908 GCTGACGCTTTGTTTGCTAC 58.325 50.000 0.00 0.00 0.00 3.58
5585 8771 1.264288 GCTGACGCTTTGTTTGCTACT 59.736 47.619 0.00 0.00 0.00 2.57
5586 8772 2.908634 CTGACGCTTTGTTTGCTACTG 58.091 47.619 0.00 0.00 0.00 2.74
5587 8773 1.601903 TGACGCTTTGTTTGCTACTGG 59.398 47.619 0.00 0.00 0.00 4.00
5588 8774 1.602377 GACGCTTTGTTTGCTACTGGT 59.398 47.619 0.00 0.00 0.00 4.00
5589 8775 2.803956 GACGCTTTGTTTGCTACTGGTA 59.196 45.455 0.00 0.00 0.00 3.25
5602 8788 3.430929 GCTACTGGTACATCTCCAAGTGG 60.431 52.174 0.00 0.00 38.20 4.00
5607 8793 4.843728 TGGTACATCTCCAAGTGGAAATC 58.156 43.478 0.89 0.00 44.91 2.17
5613 8799 4.722526 TCTCCAAGTGGAAATCCTTGAA 57.277 40.909 0.89 0.00 44.91 2.69
5614 8800 5.060427 TCTCCAAGTGGAAATCCTTGAAA 57.940 39.130 0.89 0.00 44.91 2.69
5647 8833 4.738740 CACTCGTTAGGTCGGAATTCATAC 59.261 45.833 7.93 4.40 0.00 2.39
5819 9164 1.385756 GGAGCTGGACCGACTAGACC 61.386 65.000 0.00 0.00 0.00 3.85
6036 9800 4.889856 TGCGCGCCGTATGATGCT 62.890 61.111 30.77 0.00 0.00 3.79
6045 9809 0.605589 CGTATGATGCTCTCCCTCCC 59.394 60.000 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 34 5.047377 TGCCCAAGTCAAATCCTATCAAAAC 60.047 40.000 0.00 0.00 0.00 2.43
99 101 3.343617 GTTGATTTGGCACACTAGGCTA 58.656 45.455 0.00 0.00 39.29 3.93
163 165 5.220758 GCTTCTAGAATAAGCTGGAACAAGC 60.221 44.000 5.44 0.00 44.75 4.01
166 168 4.225042 TGGCTTCTAGAATAAGCTGGAACA 59.775 41.667 13.28 1.93 46.81 3.18
167 169 4.770795 TGGCTTCTAGAATAAGCTGGAAC 58.229 43.478 13.28 0.00 46.81 3.62
190 2653 4.082354 GTCGCTTAGGACCAGTTCTTTAGA 60.082 45.833 0.00 0.00 0.00 2.10
192 2655 3.366679 CGTCGCTTAGGACCAGTTCTTTA 60.367 47.826 0.00 0.00 33.30 1.85
223 2686 2.631160 TCCTTTCTTGCCGTCTTCAA 57.369 45.000 0.00 0.00 0.00 2.69
263 2726 3.055021 TCTGAAGAGAGTAGGCGAGAGAA 60.055 47.826 0.00 0.00 0.00 2.87
264 2727 2.502130 TCTGAAGAGAGTAGGCGAGAGA 59.498 50.000 0.00 0.00 0.00 3.10
268 2734 3.210227 CTCATCTGAAGAGAGTAGGCGA 58.790 50.000 3.91 0.00 35.09 5.54
270 2736 7.938140 ATATACTCATCTGAAGAGAGTAGGC 57.062 40.000 16.06 0.00 45.06 3.93
278 2744 9.136323 TGCTCAACTTATATACTCATCTGAAGA 57.864 33.333 0.00 0.00 0.00 2.87
290 2756 9.268268 CCTAAATTTCGGTGCTCAACTTATATA 57.732 33.333 0.00 0.00 0.00 0.86
415 2912 5.460646 ACTAGCAAAACATGTGTTGTATGC 58.539 37.500 25.91 15.04 45.08 3.14
460 2959 7.890127 TCTGGATGGGAATATAAATTGGACATC 59.110 37.037 0.00 0.00 31.62 3.06
503 3355 2.135139 CGACGGAGAGAGAGAGAGATG 58.865 57.143 0.00 0.00 0.00 2.90
504 3356 1.540363 GCGACGGAGAGAGAGAGAGAT 60.540 57.143 0.00 0.00 0.00 2.75
526 3378 6.916360 ACACAGAGAGAGAGAGAGATTTTT 57.084 37.500 0.00 0.00 0.00 1.94
527 3379 6.916360 AACACAGAGAGAGAGAGAGATTTT 57.084 37.500 0.00 0.00 0.00 1.82
528 3380 6.295236 CCAAACACAGAGAGAGAGAGAGATTT 60.295 42.308 0.00 0.00 0.00 2.17
529 3381 5.185635 CCAAACACAGAGAGAGAGAGAGATT 59.814 44.000 0.00 0.00 0.00 2.40
530 3382 4.706476 CCAAACACAGAGAGAGAGAGAGAT 59.294 45.833 0.00 0.00 0.00 2.75
531 3383 4.078537 CCAAACACAGAGAGAGAGAGAGA 58.921 47.826 0.00 0.00 0.00 3.10
532 3384 4.078537 TCCAAACACAGAGAGAGAGAGAG 58.921 47.826 0.00 0.00 0.00 3.20
533 3385 4.105754 TCCAAACACAGAGAGAGAGAGA 57.894 45.455 0.00 0.00 0.00 3.10
534 3386 4.706476 AGATCCAAACACAGAGAGAGAGAG 59.294 45.833 0.00 0.00 0.00 3.20
535 3387 4.462132 CAGATCCAAACACAGAGAGAGAGA 59.538 45.833 0.00 0.00 0.00 3.10
536 3388 4.462132 TCAGATCCAAACACAGAGAGAGAG 59.538 45.833 0.00 0.00 0.00 3.20
537 3389 4.411013 TCAGATCCAAACACAGAGAGAGA 58.589 43.478 0.00 0.00 0.00 3.10
538 3390 4.797800 TCAGATCCAAACACAGAGAGAG 57.202 45.455 0.00 0.00 0.00 3.20
539 3391 5.337894 GGAATCAGATCCAAACACAGAGAGA 60.338 44.000 0.00 0.00 39.42 3.10
540 3392 4.874966 GGAATCAGATCCAAACACAGAGAG 59.125 45.833 0.00 0.00 39.42 3.20
541 3393 4.323792 GGGAATCAGATCCAAACACAGAGA 60.324 45.833 0.00 0.00 41.55 3.10
542 3394 3.944015 GGGAATCAGATCCAAACACAGAG 59.056 47.826 0.00 0.00 41.55 3.35
543 3395 3.588842 AGGGAATCAGATCCAAACACAGA 59.411 43.478 0.00 0.00 41.55 3.41
544 3396 3.960571 AGGGAATCAGATCCAAACACAG 58.039 45.455 0.00 0.00 41.55 3.66
545 3397 4.387026 AAGGGAATCAGATCCAAACACA 57.613 40.909 0.00 0.00 41.55 3.72
546 3398 6.238484 CGATAAAGGGAATCAGATCCAAACAC 60.238 42.308 0.00 0.00 41.55 3.32
547 3399 5.822519 CGATAAAGGGAATCAGATCCAAACA 59.177 40.000 0.00 0.00 41.55 2.83
548 3400 5.239525 CCGATAAAGGGAATCAGATCCAAAC 59.760 44.000 0.00 0.00 41.55 2.93
549 3401 5.104109 ACCGATAAAGGGAATCAGATCCAAA 60.104 40.000 0.00 0.00 41.55 3.28
550 3402 4.412199 ACCGATAAAGGGAATCAGATCCAA 59.588 41.667 0.00 0.00 41.55 3.53
554 3406 5.132816 AGGAAACCGATAAAGGGAATCAGAT 59.867 40.000 0.00 0.00 35.02 2.90
568 3420 2.763448 CTCAGAGGAGAAGGAAACCGAT 59.237 50.000 0.00 0.00 44.26 4.18
606 3458 5.049267 GTGGTACGTATCTCAGAGGATTCTC 60.049 48.000 7.47 0.00 40.25 2.87
607 3459 4.822896 GTGGTACGTATCTCAGAGGATTCT 59.177 45.833 7.47 0.00 0.00 2.40
608 3460 4.319622 CGTGGTACGTATCTCAGAGGATTC 60.320 50.000 7.47 0.00 36.74 2.52
609 3461 3.564644 CGTGGTACGTATCTCAGAGGATT 59.435 47.826 7.47 0.00 36.74 3.01
610 3462 3.139850 CGTGGTACGTATCTCAGAGGAT 58.860 50.000 7.47 0.00 36.74 3.24
611 3463 2.558378 CGTGGTACGTATCTCAGAGGA 58.442 52.381 7.47 0.00 36.74 3.71
612 3464 1.602851 CCGTGGTACGTATCTCAGAGG 59.397 57.143 7.47 5.73 40.58 3.69
613 3465 1.602851 CCCGTGGTACGTATCTCAGAG 59.397 57.143 7.47 0.00 40.58 3.35
614 3466 1.671979 CCCGTGGTACGTATCTCAGA 58.328 55.000 7.47 0.00 40.58 3.27
615 3467 0.030369 GCCCGTGGTACGTATCTCAG 59.970 60.000 7.47 0.00 40.58 3.35
616 3468 1.386525 GGCCCGTGGTACGTATCTCA 61.387 60.000 7.47 0.00 40.58 3.27
617 3469 1.361632 GGCCCGTGGTACGTATCTC 59.638 63.158 7.47 2.37 40.58 2.75
618 3470 2.129785 GGGCCCGTGGTACGTATCT 61.130 63.158 5.69 0.00 40.58 1.98
619 3471 2.418777 GGGCCCGTGGTACGTATC 59.581 66.667 5.69 0.00 40.58 2.24
620 3472 2.364056 TGGGCCCGTGGTACGTAT 60.364 61.111 19.37 0.00 40.58 3.06
621 3473 3.381136 GTGGGCCCGTGGTACGTA 61.381 66.667 19.37 0.00 40.58 3.57
632 3484 3.789441 TACACTAGGCTAGGGTGGGCC 62.789 61.905 34.13 0.00 43.56 5.80
633 3485 0.398098 TACACTAGGCTAGGGTGGGC 60.398 60.000 34.13 0.00 43.56 5.36
634 3486 2.040178 CTTACACTAGGCTAGGGTGGG 58.960 57.143 34.13 23.07 43.56 4.61
635 3487 2.959707 CTCTTACACTAGGCTAGGGTGG 59.040 54.545 34.13 25.79 43.56 4.61
636 3488 3.886505 CTCTCTTACACTAGGCTAGGGTG 59.113 52.174 34.13 22.46 43.56 4.61
637 3489 3.787013 TCTCTCTTACACTAGGCTAGGGT 59.213 47.826 30.55 30.55 46.03 4.34
638 3490 4.139038 GTCTCTCTTACACTAGGCTAGGG 58.861 52.174 22.09 22.09 34.64 3.53
639 3491 4.783055 TGTCTCTCTTACACTAGGCTAGG 58.217 47.826 24.57 15.66 0.00 3.02
640 3492 6.761099 TTTGTCTCTCTTACACTAGGCTAG 57.239 41.667 19.83 19.83 0.00 3.42
641 3493 7.719871 AATTTGTCTCTCTTACACTAGGCTA 57.280 36.000 0.00 0.00 0.00 3.93
642 3494 6.613153 AATTTGTCTCTCTTACACTAGGCT 57.387 37.500 0.00 0.00 0.00 4.58
643 3495 7.042389 GCATAATTTGTCTCTCTTACACTAGGC 60.042 40.741 0.00 0.00 0.00 3.93
644 3496 8.200792 AGCATAATTTGTCTCTCTTACACTAGG 58.799 37.037 0.00 0.00 0.00 3.02
645 3497 9.029243 CAGCATAATTTGTCTCTCTTACACTAG 57.971 37.037 0.00 0.00 0.00 2.57
646 3498 8.749354 TCAGCATAATTTGTCTCTCTTACACTA 58.251 33.333 0.00 0.00 0.00 2.74
647 3499 7.615403 TCAGCATAATTTGTCTCTCTTACACT 58.385 34.615 0.00 0.00 0.00 3.55
648 3500 7.834068 TCAGCATAATTTGTCTCTCTTACAC 57.166 36.000 0.00 0.00 0.00 2.90
651 3503 9.113838 GGATTTCAGCATAATTTGTCTCTCTTA 57.886 33.333 0.00 0.00 0.00 2.10
655 3507 7.114754 TCTGGATTTCAGCATAATTTGTCTCT 58.885 34.615 0.00 0.00 43.06 3.10
660 3512 7.330900 ACTCTCTGGATTTCAGCATAATTTG 57.669 36.000 0.00 0.00 43.06 2.32
680 3532 3.900388 GTGACTGTCACGAACTACTCT 57.100 47.619 23.54 0.00 37.67 3.24
736 3637 1.390565 CGATAGACTCCCTCACGGTT 58.609 55.000 0.00 0.00 39.76 4.44
765 3666 3.556365 GGGAAGATTAGTAGCACTTTCGC 59.444 47.826 0.00 0.00 0.00 4.70
767 3668 4.876679 GGTGGGAAGATTAGTAGCACTTTC 59.123 45.833 0.00 0.00 0.00 2.62
872 3785 1.720694 CGCCCAAATTTATCCGCCGT 61.721 55.000 0.00 0.00 0.00 5.68
961 3879 4.712806 TTTGGGGGAGGGGAGGGG 62.713 72.222 0.00 0.00 0.00 4.79
962 3880 2.536897 TTTTGGGGGAGGGGAGGG 60.537 66.667 0.00 0.00 0.00 4.30
963 3881 1.857348 AGTTTTGGGGGAGGGGAGG 60.857 63.158 0.00 0.00 0.00 4.30
964 3882 1.691823 GAGTTTTGGGGGAGGGGAG 59.308 63.158 0.00 0.00 0.00 4.30
965 3883 1.855451 GGAGTTTTGGGGGAGGGGA 60.855 63.158 0.00 0.00 0.00 4.81
1280 4214 0.395586 TCCAAAGCATCGATTGGGGG 60.396 55.000 14.05 4.94 44.99 5.40
1281 4215 1.027357 CTCCAAAGCATCGATTGGGG 58.973 55.000 14.05 8.16 44.99 4.96
1285 4219 3.937706 CTGAACTCTCCAAAGCATCGATT 59.062 43.478 0.00 0.00 0.00 3.34
1296 4230 2.369860 ACAAGTCATGCTGAACTCTCCA 59.630 45.455 0.00 0.00 0.00 3.86
1305 4239 0.679002 CCCCCAGACAAGTCATGCTG 60.679 60.000 2.72 0.00 34.76 4.41
1321 4255 8.762481 AAACAATTTCTATCCATAACTACCCC 57.238 34.615 0.00 0.00 0.00 4.95
1329 4263 7.345691 TGCTCTGGAAACAATTTCTATCCATA 58.654 34.615 1.62 0.00 42.06 2.74
1353 4290 2.988493 CAAACACCGAAATCAGGCAATG 59.012 45.455 0.00 0.00 0.00 2.82
1372 4309 3.951037 ACTGTACCACAAATTCACAGCAA 59.049 39.130 0.00 0.00 40.17 3.91
1388 4325 6.978343 TTCAACAAGCCATACATACTGTAC 57.022 37.500 0.00 0.00 35.42 2.90
1399 4336 3.322828 AGAGCAACATTTCAACAAGCCAT 59.677 39.130 0.00 0.00 0.00 4.40
1479 4454 3.626028 AAAATTCGGCACTCACAAGTC 57.374 42.857 0.00 0.00 31.71 3.01
1491 4466 2.159240 GCTCAAAGGGCCTAAAATTCGG 60.159 50.000 6.41 0.00 0.00 4.30
1514 4490 3.500680 CGGAAGCTGCTTAACCTAAACAA 59.499 43.478 15.95 0.00 0.00 2.83
1533 4509 3.830744 AACCGGATAATCAATGTCGGA 57.169 42.857 9.46 0.00 40.53 4.55
1535 4511 3.994392 CCCTAACCGGATAATCAATGTCG 59.006 47.826 9.46 0.00 33.16 4.35
1547 4523 1.001248 CCAGGAGACCCTAACCGGA 59.999 63.158 9.46 0.00 42.02 5.14
1551 4527 0.613777 CACACCCAGGAGACCCTAAC 59.386 60.000 0.00 0.00 42.02 2.34
1663 4644 1.962807 CAAGTGAAATGGCTTCCACCA 59.037 47.619 0.00 0.00 45.82 4.17
1733 4720 5.886960 AACTACAAAATGATGGTGCTCTC 57.113 39.130 0.00 0.00 0.00 3.20
1812 4803 1.881973 GTAAAACCCCGGAAACTGGAC 59.118 52.381 0.73 0.00 36.72 4.02
1827 4818 5.487433 TGCTGAGGATTCGAATCAGTAAAA 58.513 37.500 32.92 15.56 41.99 1.52
1848 4839 3.163630 ACACAACACCAAAACTCATGC 57.836 42.857 0.00 0.00 0.00 4.06
1906 4898 7.581213 TTCTTAATTCACAAAAGGAGAGCAA 57.419 32.000 0.00 0.00 0.00 3.91
1961 4953 2.555757 GTCCAAGTACCGTAGTGACTGT 59.444 50.000 0.00 0.00 0.00 3.55
1975 4967 4.101119 TCTTTTCCTTCTTCGAGTCCAAGT 59.899 41.667 0.00 0.00 0.00 3.16
2014 5006 8.165239 TCAGTTTCATGTGCTTGTATAAAGTT 57.835 30.769 0.00 0.00 0.00 2.66
2047 5039 6.989169 CCTCCTTTGAGTATTCATCGAGAATT 59.011 38.462 13.04 0.44 39.19 2.17
2094 5086 4.633126 GCATCATATATGAGCGTGTGGAAT 59.367 41.667 19.73 0.00 40.64 3.01
2101 5093 4.390909 CACACATGCATCATATATGAGCGT 59.609 41.667 19.73 18.96 40.64 5.07
2102 5094 4.390909 ACACACATGCATCATATATGAGCG 59.609 41.667 19.73 14.23 40.64 5.03
2290 5283 6.592798 TTTAAGTGACAGTCAAACTTACCG 57.407 37.500 4.32 0.00 36.42 4.02
2321 5314 1.897133 AGCCTTGAATTTGCAGCATGA 59.103 42.857 0.00 0.00 39.69 3.07
2337 5330 3.555966 ACAGCACTAAAGAAACAAGCCT 58.444 40.909 0.00 0.00 0.00 4.58
2382 5375 7.446931 TGTTATTCCAAAGAACATGACTTGCTA 59.553 33.333 0.00 0.00 33.97 3.49
2387 5380 7.255590 CCAAGTGTTATTCCAAAGAACATGACT 60.256 37.037 0.00 0.00 35.65 3.41
2552 5546 6.469782 TGGAAAAATATTCAGGAATGAGCC 57.530 37.500 4.81 0.00 32.50 4.70
2618 5612 8.394121 GTCCTCATCTGTAACAGAAATGAATTC 58.606 37.037 0.00 0.00 44.04 2.17
2669 5664 0.737715 GTGCTGCTCCCGACACTTAG 60.738 60.000 0.00 0.00 0.00 2.18
2677 5672 0.379669 GATTGAATGTGCTGCTCCCG 59.620 55.000 0.00 0.00 0.00 5.14
2719 5714 2.260844 AATGCCCAGTGATATGGTCG 57.739 50.000 0.00 0.00 38.81 4.79
2743 5738 7.237920 TGACAAATGACATACATTCTCATCG 57.762 36.000 0.00 0.00 46.90 3.84
2795 5790 5.474578 TCAGCAGAATTAGTGTCTCACTT 57.525 39.130 7.70 0.00 42.59 3.16
2814 5809 9.334947 TGCTCCTAATTAATTTCAAGAGATCAG 57.665 33.333 5.91 0.00 0.00 2.90
2866 5865 1.339610 TGAATTTCCGGCAACCACAAG 59.660 47.619 0.00 0.00 0.00 3.16
2877 5876 5.065859 TGGTGCAATATGTACTGAATTTCCG 59.934 40.000 0.00 0.00 33.35 4.30
2945 5944 3.044986 CAATTTCACAAAGTGGTCGCAG 58.955 45.455 0.00 0.00 33.17 5.18
2948 5947 3.354089 AGCAATTTCACAAAGTGGTCG 57.646 42.857 0.00 0.00 42.63 4.79
3029 6028 7.781693 AGCATTATATCCAGTTCTTTGATTGGT 59.218 33.333 0.00 0.00 32.51 3.67
3066 6065 5.274015 TGAAGGGAAAGGGTAAAACAGTTT 58.726 37.500 0.00 0.00 0.00 2.66
3102 6102 3.953612 ACAACAGAAAATGGAGCAGTCAA 59.046 39.130 0.00 0.00 0.00 3.18
3114 6114 9.897744 GATTACATCAAGATCAACAACAGAAAA 57.102 29.630 0.00 0.00 0.00 2.29
3116 6116 7.665145 TGGATTACATCAAGATCAACAACAGAA 59.335 33.333 0.00 0.00 0.00 3.02
3125 6125 7.718314 CAGAGGAAATGGATTACATCAAGATCA 59.282 37.037 0.00 0.00 39.40 2.92
3229 6230 4.577693 GCTATTCATCAGCATCAAGAACCA 59.422 41.667 0.00 0.00 38.93 3.67
3514 6522 2.133281 TCTGCCCAGATGTTCCAATG 57.867 50.000 0.00 0.00 31.41 2.82
3580 6588 5.870978 CCATTTCAATGTCCTTTCCATGAAC 59.129 40.000 0.00 0.00 34.60 3.18
3644 6652 5.807011 GCACTAAAGTTGAAATGCCTAATGG 59.193 40.000 0.00 0.00 0.00 3.16
3693 6702 2.303600 ACGGCACTAGGTCATTTTACCA 59.696 45.455 0.00 0.00 42.40 3.25
3867 6881 0.453793 TGTTGGTTGACGTTTGCCTG 59.546 50.000 0.00 0.00 0.00 4.85
3991 7012 1.077716 GTTGCTCCCCGGCTATGTT 60.078 57.895 0.00 0.00 0.00 2.71
4000 7022 3.455469 GCTGGCATGTTGCTCCCC 61.455 66.667 0.00 0.00 44.28 4.81
4070 7100 7.332182 GGAGATAAAATTCTACTATCAAGGGCG 59.668 40.741 0.00 0.00 0.00 6.13
4079 7110 8.157476 GGATTGCCTGGAGATAAAATTCTACTA 58.843 37.037 0.00 0.00 0.00 1.82
4081 7115 7.001073 AGGATTGCCTGGAGATAAAATTCTAC 58.999 38.462 0.00 0.00 44.90 2.59
4085 7119 6.266330 GCTTAGGATTGCCTGGAGATAAAATT 59.734 38.462 0.00 0.00 46.45 1.82
4244 7278 1.256812 CTTTGTTTTCCAGGGGCGAT 58.743 50.000 0.00 0.00 0.00 4.58
4536 7570 5.059833 AGACAAGACAGAAAGGCAAGTAAG 58.940 41.667 0.00 0.00 0.00 2.34
4537 7571 5.036117 AGACAAGACAGAAAGGCAAGTAA 57.964 39.130 0.00 0.00 0.00 2.24
4538 7572 4.689612 AGACAAGACAGAAAGGCAAGTA 57.310 40.909 0.00 0.00 0.00 2.24
4539 7573 3.567478 AGACAAGACAGAAAGGCAAGT 57.433 42.857 0.00 0.00 0.00 3.16
4540 7574 3.999663 CCTAGACAAGACAGAAAGGCAAG 59.000 47.826 0.00 0.00 0.00 4.01
4541 7575 3.646162 TCCTAGACAAGACAGAAAGGCAA 59.354 43.478 0.00 0.00 0.00 4.52
4542 7576 3.239449 TCCTAGACAAGACAGAAAGGCA 58.761 45.455 0.00 0.00 0.00 4.75
4543 7577 3.963428 TCCTAGACAAGACAGAAAGGC 57.037 47.619 0.00 0.00 0.00 4.35
4544 7578 5.413309 ACATCCTAGACAAGACAGAAAGG 57.587 43.478 0.00 0.00 0.00 3.11
4545 7579 7.708752 GGATAACATCCTAGACAAGACAGAAAG 59.291 40.741 0.00 0.00 46.19 2.62
4546 7580 7.556844 GGATAACATCCTAGACAAGACAGAAA 58.443 38.462 0.00 0.00 46.19 2.52
4547 7581 7.113658 GGATAACATCCTAGACAAGACAGAA 57.886 40.000 0.00 0.00 46.19 3.02
4596 7630 0.831288 CATGGGGGCAGGTTTCAACA 60.831 55.000 0.00 0.00 0.00 3.33
4599 7633 0.105246 AAACATGGGGGCAGGTTTCA 60.105 50.000 0.00 0.00 34.53 2.69
4653 7687 6.427974 GCTTCAAGTAGTACCTTTCAACAAC 58.572 40.000 0.00 0.00 0.00 3.32
4691 7725 2.356382 TGTTAAGTTGGGTGCTGAAACG 59.644 45.455 0.00 0.00 0.00 3.60
4730 7764 0.251077 CCTGACCTGCTGCTTTTCCT 60.251 55.000 0.00 0.00 0.00 3.36
4803 7837 0.909133 TGGTGGATGCAGAGCTACCA 60.909 55.000 15.19 15.19 35.97 3.25
4847 7884 9.938280 AGTTATTACTGTGTAAATGTAGCAGAA 57.062 29.630 0.00 0.00 31.99 3.02
4978 8039 8.792830 AGTTGAGCTGTATTAAACATACACAT 57.207 30.769 0.00 0.00 37.50 3.21
4980 8041 8.717821 TCAAGTTGAGCTGTATTAAACATACAC 58.282 33.333 0.08 0.00 37.50 2.90
4987 8048 6.430000 GGTTCCTCAAGTTGAGCTGTATTAAA 59.570 38.462 24.85 7.45 42.98 1.52
5012 8073 0.809385 CTCAAGGTGCTGCATTCCAG 59.191 55.000 5.27 0.65 44.67 3.86
5032 8093 1.260561 GCGTCGAAGCTTGTTGAGAAA 59.739 47.619 16.42 0.00 0.00 2.52
5074 8138 0.179018 AGACCCTTCTTGTGTGCACC 60.179 55.000 15.69 6.37 0.00 5.01
5090 8154 0.458025 GTAGTAGCGCCACACCAGAC 60.458 60.000 9.06 0.00 0.00 3.51
5113 8183 7.148340 CCTTGTGAAACCTTACAGATGAAGATC 60.148 40.741 0.00 0.00 34.36 2.75
5119 8189 4.651778 TCCCTTGTGAAACCTTACAGATG 58.348 43.478 0.00 0.00 34.36 2.90
5121 8191 4.457466 GTTCCCTTGTGAAACCTTACAGA 58.543 43.478 0.00 0.00 34.36 3.41
5122 8192 3.250040 CGTTCCCTTGTGAAACCTTACAG 59.750 47.826 0.00 0.00 34.36 2.74
5124 8194 3.469739 TCGTTCCCTTGTGAAACCTTAC 58.530 45.455 0.00 0.00 34.36 2.34
5136 8206 3.252458 GCAACACAATAGTTCGTTCCCTT 59.748 43.478 0.00 0.00 0.00 3.95
5144 8214 3.592059 TCTACGGGCAACACAATAGTTC 58.408 45.455 0.00 0.00 39.74 3.01
5146 8216 2.093658 CCTCTACGGGCAACACAATAGT 60.094 50.000 0.00 0.00 39.74 2.12
5171 8241 3.705072 ACAGATACAGGTAGCCCTTACAC 59.295 47.826 0.00 0.00 39.89 2.90
5227 8303 0.539669 GCACAGGGCTACCAAACCTT 60.540 55.000 0.00 0.00 40.13 3.50
5249 8342 8.492748 TCTTCTATTTGTTTGTTAGCTACAACG 58.507 33.333 0.00 0.00 46.09 4.10
5275 8371 4.262592 GGAAACTGGGAAAACAAGCATGAT 60.263 41.667 0.00 0.00 0.00 2.45
5297 8479 2.874086 TGAATAACGCATCAGCTCATGG 59.126 45.455 0.00 0.00 39.10 3.66
5298 8480 3.805971 TCTGAATAACGCATCAGCTCATG 59.194 43.478 0.00 0.00 42.21 3.07
5299 8481 4.063998 TCTGAATAACGCATCAGCTCAT 57.936 40.909 0.00 0.00 42.21 2.90
5300 8482 3.525268 TCTGAATAACGCATCAGCTCA 57.475 42.857 0.00 0.00 42.21 4.26
5301 8483 3.868077 AGTTCTGAATAACGCATCAGCTC 59.132 43.478 0.00 0.00 42.21 4.09
5302 8484 3.866651 AGTTCTGAATAACGCATCAGCT 58.133 40.909 0.00 0.00 42.21 4.24
5303 8485 4.142816 ACAAGTTCTGAATAACGCATCAGC 60.143 41.667 0.00 0.00 42.21 4.26
5304 8486 5.106948 ACACAAGTTCTGAATAACGCATCAG 60.107 40.000 0.00 0.00 43.51 2.90
5305 8487 4.754618 ACACAAGTTCTGAATAACGCATCA 59.245 37.500 0.00 0.00 34.46 3.07
5306 8488 5.283060 ACACAAGTTCTGAATAACGCATC 57.717 39.130 0.00 0.00 34.46 3.91
5307 8489 5.689383 AACACAAGTTCTGAATAACGCAT 57.311 34.783 0.00 0.00 34.46 4.73
5308 8490 5.493133 AAACACAAGTTCTGAATAACGCA 57.507 34.783 0.00 0.00 36.84 5.24
5309 8491 5.741982 ACAAAACACAAGTTCTGAATAACGC 59.258 36.000 0.00 0.00 36.84 4.84
5310 8492 7.734538 AACAAAACACAAGTTCTGAATAACG 57.265 32.000 0.00 0.00 36.84 3.18
5319 8501 7.968405 ACACTAATGAGAACAAAACACAAGTTC 59.032 33.333 0.00 0.00 41.37 3.01
5320 8502 7.826690 ACACTAATGAGAACAAAACACAAGTT 58.173 30.769 0.00 0.00 40.40 2.66
5321 8503 7.391148 ACACTAATGAGAACAAAACACAAGT 57.609 32.000 0.00 0.00 0.00 3.16
5322 8504 9.438291 CTAACACTAATGAGAACAAAACACAAG 57.562 33.333 0.00 0.00 0.00 3.16
5323 8505 7.913297 GCTAACACTAATGAGAACAAAACACAA 59.087 33.333 0.00 0.00 0.00 3.33
5324 8506 7.066404 TGCTAACACTAATGAGAACAAAACACA 59.934 33.333 0.00 0.00 0.00 3.72
5325 8507 7.414436 TGCTAACACTAATGAGAACAAAACAC 58.586 34.615 0.00 0.00 0.00 3.32
5326 8508 7.561021 TGCTAACACTAATGAGAACAAAACA 57.439 32.000 0.00 0.00 0.00 2.83
5327 8509 8.850454 TTTGCTAACACTAATGAGAACAAAAC 57.150 30.769 0.00 0.00 0.00 2.43
5328 8510 9.462174 CATTTGCTAACACTAATGAGAACAAAA 57.538 29.630 0.00 0.00 35.59 2.44
5329 8511 8.629158 ACATTTGCTAACACTAATGAGAACAAA 58.371 29.630 0.00 0.00 36.61 2.83
5330 8512 8.165239 ACATTTGCTAACACTAATGAGAACAA 57.835 30.769 0.00 0.00 36.61 2.83
5331 8513 7.744087 ACATTTGCTAACACTAATGAGAACA 57.256 32.000 0.00 0.00 36.61 3.18
5332 8514 9.922305 GATACATTTGCTAACACTAATGAGAAC 57.078 33.333 0.00 0.00 36.61 3.01
5333 8515 9.665719 TGATACATTTGCTAACACTAATGAGAA 57.334 29.630 0.00 0.00 36.61 2.87
5334 8516 9.317936 CTGATACATTTGCTAACACTAATGAGA 57.682 33.333 0.00 0.00 36.61 3.27
5335 8517 9.102757 ACTGATACATTTGCTAACACTAATGAG 57.897 33.333 0.00 0.00 36.61 2.90
5336 8518 9.098355 GACTGATACATTTGCTAACACTAATGA 57.902 33.333 0.00 0.00 36.61 2.57
5337 8519 9.102757 AGACTGATACATTTGCTAACACTAATG 57.897 33.333 0.00 0.00 38.30 1.90
5338 8520 9.672673 AAGACTGATACATTTGCTAACACTAAT 57.327 29.630 0.00 0.00 0.00 1.73
5339 8521 9.502091 AAAGACTGATACATTTGCTAACACTAA 57.498 29.630 0.00 0.00 0.00 2.24
5340 8522 9.502091 AAAAGACTGATACATTTGCTAACACTA 57.498 29.630 0.00 0.00 0.00 2.74
5341 8523 7.986085 AAAGACTGATACATTTGCTAACACT 57.014 32.000 0.00 0.00 0.00 3.55
5342 8524 9.543018 GTAAAAGACTGATACATTTGCTAACAC 57.457 33.333 0.00 0.00 0.00 3.32
5343 8525 8.440059 CGTAAAAGACTGATACATTTGCTAACA 58.560 33.333 0.00 0.00 0.00 2.41
5344 8526 8.653338 TCGTAAAAGACTGATACATTTGCTAAC 58.347 33.333 0.00 0.00 0.00 2.34
5345 8527 8.766000 TCGTAAAAGACTGATACATTTGCTAA 57.234 30.769 0.00 0.00 0.00 3.09
5346 8528 8.766000 TTCGTAAAAGACTGATACATTTGCTA 57.234 30.769 0.00 0.00 0.00 3.49
5347 8529 7.667043 TTCGTAAAAGACTGATACATTTGCT 57.333 32.000 0.00 0.00 0.00 3.91
5348 8530 7.801315 TGTTTCGTAAAAGACTGATACATTTGC 59.199 33.333 0.00 0.00 0.00 3.68
5349 8531 9.318041 CTGTTTCGTAAAAGACTGATACATTTG 57.682 33.333 0.00 0.00 29.67 2.32
5350 8532 9.268268 TCTGTTTCGTAAAAGACTGATACATTT 57.732 29.630 0.00 0.00 29.67 2.32
5351 8533 8.827177 TCTGTTTCGTAAAAGACTGATACATT 57.173 30.769 0.00 0.00 29.67 2.71
5352 8534 9.436957 AATCTGTTTCGTAAAAGACTGATACAT 57.563 29.630 0.00 0.00 32.63 2.29
5353 8535 8.708742 CAATCTGTTTCGTAAAAGACTGATACA 58.291 33.333 0.00 0.00 32.63 2.29
5354 8536 8.709646 ACAATCTGTTTCGTAAAAGACTGATAC 58.290 33.333 9.96 0.00 32.63 2.24
5355 8537 8.708742 CACAATCTGTTTCGTAAAAGACTGATA 58.291 33.333 9.96 0.00 32.63 2.15
5356 8538 7.226720 ACACAATCTGTTTCGTAAAAGACTGAT 59.773 33.333 9.96 0.00 33.79 2.90
5357 8539 6.537301 ACACAATCTGTTTCGTAAAAGACTGA 59.463 34.615 9.96 0.00 0.00 3.41
5358 8540 6.715464 ACACAATCTGTTTCGTAAAAGACTG 58.285 36.000 2.32 2.32 0.00 3.51
5359 8541 6.920569 ACACAATCTGTTTCGTAAAAGACT 57.079 33.333 0.00 0.00 0.00 3.24
5360 8542 6.631636 GGAACACAATCTGTTTCGTAAAAGAC 59.368 38.462 0.00 0.00 43.60 3.01
5361 8543 6.540914 AGGAACACAATCTGTTTCGTAAAAGA 59.459 34.615 0.00 0.00 43.60 2.52
5362 8544 6.632834 CAGGAACACAATCTGTTTCGTAAAAG 59.367 38.462 0.00 0.00 43.60 2.27
5363 8545 6.094325 ACAGGAACACAATCTGTTTCGTAAAA 59.906 34.615 0.00 0.00 43.60 1.52
5364 8546 5.587043 ACAGGAACACAATCTGTTTCGTAAA 59.413 36.000 0.00 0.00 43.60 2.01
5365 8547 5.007234 CACAGGAACACAATCTGTTTCGTAA 59.993 40.000 0.00 0.00 43.60 3.18
5366 8548 4.509970 CACAGGAACACAATCTGTTTCGTA 59.490 41.667 0.00 0.00 43.60 3.43
5367 8549 3.312421 CACAGGAACACAATCTGTTTCGT 59.688 43.478 0.00 0.00 43.60 3.85
5368 8550 3.312421 ACACAGGAACACAATCTGTTTCG 59.688 43.478 0.00 0.00 43.60 3.46
5369 8551 4.498009 CCACACAGGAACACAATCTGTTTC 60.498 45.833 0.00 0.00 43.60 2.78
5370 8552 3.381272 CCACACAGGAACACAATCTGTTT 59.619 43.478 0.00 0.00 43.60 2.83
5371 8553 2.951642 CCACACAGGAACACAATCTGTT 59.048 45.455 0.00 0.00 46.44 3.16
5372 8554 2.092429 ACCACACAGGAACACAATCTGT 60.092 45.455 0.00 0.00 41.81 3.41
5373 8555 2.575532 ACCACACAGGAACACAATCTG 58.424 47.619 0.00 0.00 41.22 2.90
5374 8556 4.326826 CATACCACACAGGAACACAATCT 58.673 43.478 0.00 0.00 41.22 2.40
5375 8557 3.119849 GCATACCACACAGGAACACAATC 60.120 47.826 0.00 0.00 41.22 2.67
5376 8558 2.819608 GCATACCACACAGGAACACAAT 59.180 45.455 0.00 0.00 41.22 2.71
5377 8559 2.226330 GCATACCACACAGGAACACAA 58.774 47.619 0.00 0.00 41.22 3.33
5378 8560 1.544537 GGCATACCACACAGGAACACA 60.545 52.381 0.00 0.00 41.22 3.72
5379 8561 1.165270 GGCATACCACACAGGAACAC 58.835 55.000 0.00 0.00 41.22 3.32
5380 8562 1.064003 AGGCATACCACACAGGAACA 58.936 50.000 0.00 0.00 41.22 3.18
5381 8563 1.271379 ACAGGCATACCACACAGGAAC 60.271 52.381 0.00 0.00 41.22 3.62
5382 8564 1.003118 GACAGGCATACCACACAGGAA 59.997 52.381 0.00 0.00 41.22 3.36
5385 8567 1.676916 CCAGACAGGCATACCACACAG 60.677 57.143 0.00 0.00 39.06 3.66
5407 8589 2.512515 GAGACCTGCGGATGTGCC 60.513 66.667 0.00 0.00 0.00 5.01
5431 8613 2.594303 TGGCCAGTGTTTGCTCCG 60.594 61.111 0.00 0.00 0.00 4.63
5432 8614 2.270986 CCTGGCCAGTGTTTGCTCC 61.271 63.158 30.63 0.00 0.00 4.70
5434 8616 0.178953 ATTCCTGGCCAGTGTTTGCT 60.179 50.000 30.63 5.75 0.00 3.91
5436 8618 1.542915 CTGATTCCTGGCCAGTGTTTG 59.457 52.381 30.63 15.44 0.00 2.93
5437 8619 1.548582 CCTGATTCCTGGCCAGTGTTT 60.549 52.381 30.63 12.87 0.00 2.83
5438 8620 0.038744 CCTGATTCCTGGCCAGTGTT 59.961 55.000 30.63 14.74 0.00 3.32
5439 8621 1.136329 ACCTGATTCCTGGCCAGTGT 61.136 55.000 30.63 16.17 35.04 3.55
5441 8623 0.329596 GAACCTGATTCCTGGCCAGT 59.670 55.000 30.63 13.43 35.04 4.00
5442 8624 3.181526 GAACCTGATTCCTGGCCAG 57.818 57.895 26.87 26.87 35.04 4.85
5450 8632 3.955471 TGGACATTCTGGAACCTGATTC 58.045 45.455 1.56 0.45 36.48 2.52
5451 8633 4.043310 TCTTGGACATTCTGGAACCTGATT 59.957 41.667 1.56 0.00 0.00 2.57
5452 8634 3.588842 TCTTGGACATTCTGGAACCTGAT 59.411 43.478 1.56 0.00 0.00 2.90
5453 8635 2.978978 TCTTGGACATTCTGGAACCTGA 59.021 45.455 0.00 0.00 0.00 3.86
5460 8642 5.128205 TGAATATGCTCTTGGACATTCTGG 58.872 41.667 0.00 0.00 0.00 3.86
5467 8649 5.404968 CGAGAATCTGAATATGCTCTTGGAC 59.595 44.000 0.00 0.00 0.00 4.02
5471 8653 5.757320 CCAACGAGAATCTGAATATGCTCTT 59.243 40.000 0.00 0.00 0.00 2.85
5496 8678 2.507339 AAAACAGGTGACCATTTGCG 57.493 45.000 3.63 0.00 0.00 4.85
5553 8739 2.581354 GTCAGCGTCAGGGAGCAT 59.419 61.111 0.00 0.00 35.48 3.79
5566 8752 2.349817 CCAGTAGCAAACAAAGCGTCAG 60.350 50.000 0.00 0.00 37.01 3.51
5568 8754 1.602377 ACCAGTAGCAAACAAAGCGTC 59.398 47.619 0.00 0.00 37.01 5.19
5570 8756 2.546368 TGTACCAGTAGCAAACAAAGCG 59.454 45.455 0.00 0.00 37.01 4.68
5571 8757 4.455877 AGATGTACCAGTAGCAAACAAAGC 59.544 41.667 0.00 0.00 0.00 3.51
5572 8758 5.122396 GGAGATGTACCAGTAGCAAACAAAG 59.878 44.000 0.00 0.00 0.00 2.77
5574 8760 4.041075 TGGAGATGTACCAGTAGCAAACAA 59.959 41.667 0.00 0.00 33.22 2.83
5575 8761 3.580895 TGGAGATGTACCAGTAGCAAACA 59.419 43.478 0.00 0.00 33.22 2.83
5576 8762 4.202245 TGGAGATGTACCAGTAGCAAAC 57.798 45.455 0.00 0.00 33.22 2.93
5577 8763 4.286032 ACTTGGAGATGTACCAGTAGCAAA 59.714 41.667 0.00 0.00 38.70 3.68
5578 8764 3.838317 ACTTGGAGATGTACCAGTAGCAA 59.162 43.478 0.00 0.00 38.70 3.91
5579 8765 3.195610 CACTTGGAGATGTACCAGTAGCA 59.804 47.826 0.00 0.00 38.70 3.49
5580 8766 3.430929 CCACTTGGAGATGTACCAGTAGC 60.431 52.174 0.00 0.00 38.70 3.58
5581 8767 4.023980 TCCACTTGGAGATGTACCAGTAG 58.976 47.826 0.00 0.00 39.78 2.57
5582 8768 4.055710 TCCACTTGGAGATGTACCAGTA 57.944 45.455 0.00 0.00 39.78 2.74
5583 8769 2.902608 TCCACTTGGAGATGTACCAGT 58.097 47.619 0.00 0.00 39.78 4.00
5584 8770 3.981071 TTCCACTTGGAGATGTACCAG 57.019 47.619 0.00 0.00 46.36 4.00
5585 8771 4.324254 GGATTTCCACTTGGAGATGTACCA 60.324 45.833 6.03 0.00 46.36 3.25
5586 8772 4.080299 AGGATTTCCACTTGGAGATGTACC 60.080 45.833 6.03 2.21 46.36 3.34
5587 8773 5.104259 AGGATTTCCACTTGGAGATGTAC 57.896 43.478 6.03 0.00 46.36 2.90
5588 8774 5.250543 TCAAGGATTTCCACTTGGAGATGTA 59.749 40.000 6.03 0.00 46.36 2.29
5589 8775 4.043310 TCAAGGATTTCCACTTGGAGATGT 59.957 41.667 6.03 0.00 46.36 3.06
5613 8799 3.139077 CCTAACGAGTGCTCCTGTTTTT 58.861 45.455 0.00 0.00 0.00 1.94
5614 8800 2.104281 ACCTAACGAGTGCTCCTGTTTT 59.896 45.455 0.00 0.00 0.00 2.43
5629 8815 6.145338 TGAGAGTATGAATTCCGACCTAAC 57.855 41.667 2.27 0.00 0.00 2.34
5819 9164 1.577328 AAGCGCGGATTGGTTCAGTG 61.577 55.000 8.83 0.00 33.74 3.66
5958 9718 1.454111 GAGTAGAGAGGCTGCGGGA 60.454 63.158 0.00 0.00 34.03 5.14
5960 9720 2.494530 GGGAGTAGAGAGGCTGCGG 61.495 68.421 0.00 0.00 34.03 5.69
5964 9724 2.123640 GGCGGGAGTAGAGAGGCT 60.124 66.667 0.00 0.00 0.00 4.58
6022 9786 2.024319 GGAGAGCATCATACGGCGC 61.024 63.158 6.90 0.00 37.82 6.53
6023 9787 1.373497 GGGAGAGCATCATACGGCG 60.373 63.158 4.80 4.80 37.82 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.