Multiple sequence alignment - TraesCS4D01G317800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G317800 chr4D 100.000 3275 0 0 1 3275 482689019 482692293 0.000000e+00 6048.0
1 TraesCS4D01G317800 chr4D 82.353 238 14 7 1 211 334200731 334200495 7.220000e-42 182.0
2 TraesCS4D01G317800 chr4D 82.427 239 13 6 1 211 471959424 471959187 7.220000e-42 182.0
3 TraesCS4D01G317800 chr4B 92.474 2405 82 36 414 2746 612259439 612261816 0.000000e+00 3347.0
4 TraesCS4D01G317800 chr5A 91.184 2348 96 44 527 2802 659880932 659878624 0.000000e+00 3086.0
5 TraesCS4D01G317800 chr5A 85.613 424 31 17 2822 3234 659878639 659878235 5.050000e-113 418.0
6 TraesCS4D01G317800 chr5A 88.760 258 7 4 282 535 659881355 659881116 2.470000e-76 296.0
7 TraesCS4D01G317800 chr5A 85.784 204 25 3 1 201 458476893 458477095 2.560000e-51 213.0
8 TraesCS4D01G317800 chr5A 81.452 248 32 9 1 244 368133515 368133278 1.200000e-44 191.0
9 TraesCS4D01G317800 chrUn 82.906 468 69 6 1363 1821 91652912 91652447 8.460000e-111 411.0
10 TraesCS4D01G317800 chrUn 82.803 471 70 6 1360 1821 239778791 239779259 8.460000e-111 411.0
11 TraesCS4D01G317800 chrUn 83.122 237 14 6 1 211 221217920 221217684 3.330000e-45 193.0
12 TraesCS4D01G317800 chr7D 85.512 283 33 4 1286 1568 390219704 390219978 4.130000e-74 289.0
13 TraesCS4D01G317800 chr2D 83.784 222 16 9 10 211 538756531 538756752 3.330000e-45 193.0
14 TraesCS4D01G317800 chr2D 82.609 115 12 6 67 173 43079069 43079183 9.670000e-16 95.3
15 TraesCS4D01G317800 chr1D 82.845 239 15 6 1 215 448259002 448258766 1.200000e-44 191.0
16 TraesCS4D01G317800 chr7B 78.776 245 52 0 1800 2044 748457716 748457960 7.270000e-37 165.0
17 TraesCS4D01G317800 chr2A 79.565 230 14 12 1 205 760865030 760864809 2.050000e-27 134.0
18 TraesCS4D01G317800 chr5D 81.421 183 9 7 1 160 540241294 540241114 3.430000e-25 126.0
19 TraesCS4D01G317800 chr2B 81.395 172 8 12 1 149 514777962 514778132 5.740000e-23 119.0
20 TraesCS4D01G317800 chr6D 95.385 65 1 2 4 67 355864186 355864123 5.780000e-18 102.0
21 TraesCS4D01G317800 chr1B 89.041 73 8 0 1287 1359 561545958 561546030 1.250000e-14 91.6
22 TraesCS4D01G317800 chr7A 78.723 141 20 7 68 205 679828610 679828477 5.820000e-13 86.1
23 TraesCS4D01G317800 chr4A 76.536 179 22 11 32 197 16994589 16994760 2.710000e-11 80.5
24 TraesCS4D01G317800 chr3D 75.000 188 36 8 29 205 388514888 388515075 3.500000e-10 76.8
25 TraesCS4D01G317800 chr6B 94.737 38 2 0 1937 1974 89566059 89566022 3.530000e-05 60.2
26 TraesCS4D01G317800 chr3B 100.000 28 0 0 237 264 745562233 745562260 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G317800 chr4D 482689019 482692293 3274 False 6048.000000 6048 100.000 1 3275 1 chr4D.!!$F1 3274
1 TraesCS4D01G317800 chr4B 612259439 612261816 2377 False 3347.000000 3347 92.474 414 2746 1 chr4B.!!$F1 2332
2 TraesCS4D01G317800 chr5A 659878235 659881355 3120 True 1266.666667 3086 88.519 282 3234 3 chr5A.!!$R2 2952

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 258 0.108186 TAGCACGGCTGTTGGAGATG 60.108 55.0 0.0 0.0 40.1 2.90 F
262 263 0.169672 CGGCTGTTGGAGATGCTTTG 59.830 55.0 0.0 0.0 0.0 2.77 F
276 277 0.316524 GCTTTGATGCTTCGCCGATC 60.317 55.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1587 1825 1.185618 TGGTGAGGTTGGAGACGGAG 61.186 60.000 0.00 0.00 0.00 4.63 R
1594 1832 1.228245 GCAGCTTGGTGAGGTTGGA 60.228 57.895 3.84 0.00 32.70 3.53 R
2275 2513 1.301293 TGTGCGGCACATCCCATTA 59.699 52.632 30.40 6.56 39.62 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.994887 TTTTTATGTCGTTGCACAGTAGT 57.005 34.783 0.00 0.00 0.00 2.73
32 33 5.994887 TTTTATGTCGTTGCACAGTAGTT 57.005 34.783 0.00 0.00 0.00 2.24
33 34 5.994887 TTTATGTCGTTGCACAGTAGTTT 57.005 34.783 0.00 0.00 0.00 2.66
34 35 5.994887 TTATGTCGTTGCACAGTAGTTTT 57.005 34.783 0.00 0.00 0.00 2.43
35 36 7.479897 TTTATGTCGTTGCACAGTAGTTTTA 57.520 32.000 0.00 0.00 0.00 1.52
36 37 7.661127 TTATGTCGTTGCACAGTAGTTTTAT 57.339 32.000 0.00 0.00 0.00 1.40
37 38 5.585500 TGTCGTTGCACAGTAGTTTTATC 57.415 39.130 0.00 0.00 0.00 1.75
38 39 5.294356 TGTCGTTGCACAGTAGTTTTATCT 58.706 37.500 0.00 0.00 0.00 1.98
39 40 6.448852 TGTCGTTGCACAGTAGTTTTATCTA 58.551 36.000 0.00 0.00 0.00 1.98
40 41 7.094631 TGTCGTTGCACAGTAGTTTTATCTAT 58.905 34.615 0.00 0.00 0.00 1.98
41 42 7.274904 TGTCGTTGCACAGTAGTTTTATCTATC 59.725 37.037 0.00 0.00 0.00 2.08
42 43 7.488471 GTCGTTGCACAGTAGTTTTATCTATCT 59.512 37.037 0.00 0.00 0.00 1.98
43 44 8.680001 TCGTTGCACAGTAGTTTTATCTATCTA 58.320 33.333 0.00 0.00 0.00 1.98
44 45 9.464714 CGTTGCACAGTAGTTTTATCTATCTAT 57.535 33.333 0.00 0.00 0.00 1.98
113 114 8.951954 TTTAAAAATATGTACGCAATGTTCGT 57.048 26.923 0.00 0.00 43.20 3.85
114 115 6.846870 AAAAATATGTACGCAATGTTCGTG 57.153 33.333 0.00 0.00 40.69 4.35
115 116 3.585748 ATATGTACGCAATGTTCGTGC 57.414 42.857 0.00 0.00 40.69 5.34
137 138 3.666730 GCGCGTGCTGCATTTTAG 58.333 55.556 15.02 0.00 46.97 1.85
138 139 2.499603 GCGCGTGCTGCATTTTAGC 61.500 57.895 15.02 6.30 46.97 3.09
139 140 2.210375 CGCGTGCTGCATTTTAGCG 61.210 57.895 18.54 18.54 46.97 4.26
140 141 1.154225 GCGTGCTGCATTTTAGCGT 60.154 52.632 5.27 0.00 44.01 5.07
141 142 1.398022 GCGTGCTGCATTTTAGCGTG 61.398 55.000 5.27 0.00 44.01 5.34
142 143 0.794229 CGTGCTGCATTTTAGCGTGG 60.794 55.000 5.27 0.00 44.01 4.94
143 144 0.240945 GTGCTGCATTTTAGCGTGGT 59.759 50.000 5.27 0.00 44.01 4.16
144 145 0.958091 TGCTGCATTTTAGCGTGGTT 59.042 45.000 0.00 0.00 44.01 3.67
145 146 1.335780 TGCTGCATTTTAGCGTGGTTG 60.336 47.619 0.00 0.00 44.01 3.77
146 147 1.339711 CTGCATTTTAGCGTGGTTGC 58.660 50.000 0.00 0.00 37.31 4.17
148 149 1.335780 TGCATTTTAGCGTGGTTGCTG 60.336 47.619 0.00 0.00 46.70 4.41
149 150 1.068610 GCATTTTAGCGTGGTTGCTGA 60.069 47.619 0.00 0.00 46.70 4.26
150 151 2.606795 GCATTTTAGCGTGGTTGCTGAA 60.607 45.455 0.00 0.00 46.70 3.02
152 153 2.766970 TTTAGCGTGGTTGCTGAAAC 57.233 45.000 0.00 0.00 46.70 2.78
153 154 1.961793 TTAGCGTGGTTGCTGAAACT 58.038 45.000 0.00 0.00 46.70 2.66
154 155 2.823924 TAGCGTGGTTGCTGAAACTA 57.176 45.000 0.00 0.00 46.70 2.24
155 156 1.226746 AGCGTGGTTGCTGAAACTAC 58.773 50.000 5.01 5.01 45.28 2.73
157 158 3.748021 GTGGTTGCTGAAACTACGC 57.252 52.632 0.00 0.00 39.99 4.42
158 159 0.110823 GTGGTTGCTGAAACTACGCG 60.111 55.000 3.53 3.53 39.99 6.01
159 160 1.154469 GGTTGCTGAAACTACGCGC 60.154 57.895 5.73 0.00 38.92 6.86
160 161 1.567537 GTTGCTGAAACTACGCGCA 59.432 52.632 5.73 0.00 35.75 6.09
161 162 0.721483 GTTGCTGAAACTACGCGCAC 60.721 55.000 5.73 0.00 35.75 5.34
163 164 2.093983 CTGAAACTACGCGCACGC 59.906 61.111 5.73 4.64 45.53 5.34
164 165 2.355363 TGAAACTACGCGCACGCT 60.355 55.556 13.70 3.04 45.53 5.07
165 166 1.068832 CTGAAACTACGCGCACGCTA 61.069 55.000 13.70 4.05 45.53 4.26
166 167 0.663867 TGAAACTACGCGCACGCTAA 60.664 50.000 13.70 0.00 45.53 3.09
167 168 0.435769 GAAACTACGCGCACGCTAAA 59.564 50.000 13.70 0.00 45.53 1.85
168 169 1.060122 GAAACTACGCGCACGCTAAAT 59.940 47.619 13.70 0.00 45.53 1.40
169 170 1.073177 AACTACGCGCACGCTAAATT 58.927 45.000 13.70 0.00 45.53 1.82
170 171 1.073177 ACTACGCGCACGCTAAATTT 58.927 45.000 13.70 0.00 45.53 1.82
171 172 1.461897 ACTACGCGCACGCTAAATTTT 59.538 42.857 13.70 0.00 45.53 1.82
172 173 2.667481 ACTACGCGCACGCTAAATTTTA 59.333 40.909 13.70 0.00 45.53 1.52
173 174 2.598000 ACGCGCACGCTAAATTTTAA 57.402 40.000 13.70 0.00 45.53 1.52
174 175 2.235855 ACGCGCACGCTAAATTTTAAC 58.764 42.857 13.70 0.00 45.53 2.01
175 176 1.245758 CGCGCACGCTAAATTTTAACG 59.754 47.619 13.70 9.71 39.32 3.18
176 177 1.008846 GCGCACGCTAAATTTTAACGC 60.009 47.619 7.96 7.72 38.26 4.84
180 181 2.168201 CGCTAAATTTTAACGCGGCT 57.832 45.000 12.47 0.00 40.11 5.52
181 182 1.837747 CGCTAAATTTTAACGCGGCTG 59.162 47.619 12.47 0.00 40.11 4.85
182 183 1.582052 GCTAAATTTTAACGCGGCTGC 59.418 47.619 12.47 7.70 37.91 5.25
183 184 2.731027 GCTAAATTTTAACGCGGCTGCT 60.731 45.455 17.03 0.00 39.65 4.24
184 185 1.696988 AAATTTTAACGCGGCTGCTG 58.303 45.000 17.03 11.74 39.65 4.41
185 186 0.109319 AATTTTAACGCGGCTGCTGG 60.109 50.000 17.03 3.05 39.65 4.85
186 187 0.958382 ATTTTAACGCGGCTGCTGGA 60.958 50.000 17.03 0.00 39.65 3.86
187 188 1.573829 TTTTAACGCGGCTGCTGGAG 61.574 55.000 17.03 1.80 39.65 3.86
188 189 3.950794 TTAACGCGGCTGCTGGAGG 62.951 63.158 17.03 1.37 39.65 4.30
211 212 3.977244 CTGCCCGCCGCACTTTTT 61.977 61.111 0.00 0.00 44.64 1.94
230 231 4.799419 TTTTAGGTGACGTACTGCAAAC 57.201 40.909 0.00 0.00 0.00 2.93
231 232 3.738830 TTAGGTGACGTACTGCAAACT 57.261 42.857 0.00 0.00 0.00 2.66
232 233 4.852134 TTAGGTGACGTACTGCAAACTA 57.148 40.909 0.00 0.00 0.00 2.24
233 234 3.955650 AGGTGACGTACTGCAAACTAT 57.044 42.857 0.00 0.00 0.00 2.12
234 235 3.846360 AGGTGACGTACTGCAAACTATC 58.154 45.455 0.00 0.00 0.00 2.08
235 236 3.510360 AGGTGACGTACTGCAAACTATCT 59.490 43.478 0.00 0.00 0.00 1.98
236 237 4.021368 AGGTGACGTACTGCAAACTATCTT 60.021 41.667 0.00 0.00 0.00 2.40
237 238 4.689345 GGTGACGTACTGCAAACTATCTTT 59.311 41.667 0.00 0.00 0.00 2.52
238 239 5.178809 GGTGACGTACTGCAAACTATCTTTT 59.821 40.000 0.00 0.00 0.00 2.27
239 240 6.366877 GGTGACGTACTGCAAACTATCTTTTA 59.633 38.462 0.00 0.00 0.00 1.52
240 241 7.411588 GGTGACGTACTGCAAACTATCTTTTAG 60.412 40.741 0.00 0.00 0.00 1.85
241 242 6.090358 TGACGTACTGCAAACTATCTTTTAGC 59.910 38.462 0.00 0.00 0.00 3.09
242 243 5.929992 ACGTACTGCAAACTATCTTTTAGCA 59.070 36.000 0.00 0.00 0.00 3.49
243 244 6.128634 ACGTACTGCAAACTATCTTTTAGCAC 60.129 38.462 0.00 0.00 0.00 4.40
244 245 5.283060 ACTGCAAACTATCTTTTAGCACG 57.717 39.130 0.00 0.00 0.00 5.34
245 246 4.154195 ACTGCAAACTATCTTTTAGCACGG 59.846 41.667 0.00 0.00 0.00 4.94
246 247 3.119990 TGCAAACTATCTTTTAGCACGGC 60.120 43.478 0.00 0.00 0.00 5.68
247 248 3.127030 GCAAACTATCTTTTAGCACGGCT 59.873 43.478 3.87 3.87 43.41 5.52
248 249 4.651994 CAAACTATCTTTTAGCACGGCTG 58.348 43.478 8.44 0.00 40.10 4.85
249 250 3.611766 ACTATCTTTTAGCACGGCTGT 57.388 42.857 8.44 0.00 40.10 4.40
250 251 3.939066 ACTATCTTTTAGCACGGCTGTT 58.061 40.909 0.00 0.00 40.10 3.16
251 252 3.684788 ACTATCTTTTAGCACGGCTGTTG 59.315 43.478 0.00 0.00 40.10 3.33
252 253 1.234821 TCTTTTAGCACGGCTGTTGG 58.765 50.000 0.00 0.00 40.10 3.77
253 254 1.202710 TCTTTTAGCACGGCTGTTGGA 60.203 47.619 0.00 0.78 40.10 3.53
254 255 1.197721 CTTTTAGCACGGCTGTTGGAG 59.802 52.381 0.00 0.00 40.10 3.86
255 256 0.394938 TTTAGCACGGCTGTTGGAGA 59.605 50.000 0.00 0.00 40.10 3.71
256 257 0.613260 TTAGCACGGCTGTTGGAGAT 59.387 50.000 0.00 0.00 40.10 2.75
257 258 0.108186 TAGCACGGCTGTTGGAGATG 60.108 55.000 0.00 0.00 40.10 2.90
258 259 3.044059 GCACGGCTGTTGGAGATGC 62.044 63.158 0.00 0.00 0.00 3.91
259 260 1.376424 CACGGCTGTTGGAGATGCT 60.376 57.895 0.00 0.00 0.00 3.79
260 261 0.957395 CACGGCTGTTGGAGATGCTT 60.957 55.000 0.00 0.00 0.00 3.91
261 262 0.250901 ACGGCTGTTGGAGATGCTTT 60.251 50.000 0.00 0.00 0.00 3.51
262 263 0.169672 CGGCTGTTGGAGATGCTTTG 59.830 55.000 0.00 0.00 0.00 2.77
263 264 1.538047 GGCTGTTGGAGATGCTTTGA 58.462 50.000 0.00 0.00 0.00 2.69
264 265 2.097825 GGCTGTTGGAGATGCTTTGAT 58.902 47.619 0.00 0.00 0.00 2.57
265 266 2.159282 GGCTGTTGGAGATGCTTTGATG 60.159 50.000 0.00 0.00 0.00 3.07
266 267 2.734492 GCTGTTGGAGATGCTTTGATGC 60.734 50.000 0.00 0.00 0.00 3.91
267 268 2.753452 CTGTTGGAGATGCTTTGATGCT 59.247 45.455 0.00 0.00 0.00 3.79
268 269 3.159472 TGTTGGAGATGCTTTGATGCTT 58.841 40.909 0.00 0.00 0.00 3.91
269 270 3.192001 TGTTGGAGATGCTTTGATGCTTC 59.808 43.478 0.00 0.00 37.38 3.86
270 271 2.011947 TGGAGATGCTTTGATGCTTCG 58.988 47.619 0.00 0.00 40.58 3.79
271 272 1.268437 GGAGATGCTTTGATGCTTCGC 60.268 52.381 0.00 0.00 40.58 4.70
272 273 0.737219 AGATGCTTTGATGCTTCGCC 59.263 50.000 0.00 0.00 40.58 5.54
273 274 0.590732 GATGCTTTGATGCTTCGCCG 60.591 55.000 0.00 0.00 0.00 6.46
274 275 1.026182 ATGCTTTGATGCTTCGCCGA 61.026 50.000 0.00 0.00 0.00 5.54
275 276 1.026182 TGCTTTGATGCTTCGCCGAT 61.026 50.000 0.00 0.00 0.00 4.18
276 277 0.316524 GCTTTGATGCTTCGCCGATC 60.317 55.000 0.00 0.00 0.00 3.69
277 278 1.293924 CTTTGATGCTTCGCCGATCT 58.706 50.000 0.00 0.00 0.00 2.75
278 279 2.473816 CTTTGATGCTTCGCCGATCTA 58.526 47.619 0.00 0.00 0.00 1.98
279 280 1.852942 TTGATGCTTCGCCGATCTAC 58.147 50.000 0.00 0.00 0.00 2.59
280 281 1.032794 TGATGCTTCGCCGATCTACT 58.967 50.000 0.00 0.00 0.00 2.57
302 303 2.474816 ACGTGACAAAGAAGCAGACTC 58.525 47.619 0.00 0.00 0.00 3.36
396 397 1.299089 GTGCTTTCACCGGTGCAAC 60.299 57.895 30.25 18.68 37.24 4.17
397 398 1.453015 TGCTTTCACCGGTGCAACT 60.453 52.632 30.25 0.00 36.74 3.16
398 399 1.034838 TGCTTTCACCGGTGCAACTT 61.035 50.000 30.25 0.00 36.74 2.66
399 400 0.594796 GCTTTCACCGGTGCAACTTG 60.595 55.000 30.25 14.48 36.74 3.16
400 401 0.594796 CTTTCACCGGTGCAACTTGC 60.595 55.000 30.25 6.82 45.29 4.01
453 459 1.668101 GACTCGCCTCGGATTCCACT 61.668 60.000 3.09 0.00 0.00 4.00
454 464 1.227089 CTCGCCTCGGATTCCACTG 60.227 63.158 3.09 0.00 0.00 3.66
521 531 2.267961 CTCCACCCTAACGGCCAC 59.732 66.667 2.24 0.00 33.26 5.01
535 545 6.987992 CCTAACGGCCACACTATTATTTCTTA 59.012 38.462 2.24 0.00 0.00 2.10
658 876 1.948834 CATAATGGAGCGCAATGACCA 59.051 47.619 11.47 11.32 36.83 4.02
673 891 5.049749 GCAATGACCACCACCAAATAAAAAC 60.050 40.000 0.00 0.00 0.00 2.43
867 1096 3.395639 TCGTTAGTTAGTTGCCCACAAG 58.604 45.455 0.00 0.00 36.16 3.16
890 1119 4.790766 GCCATTGCTCATTTTATCCTCACG 60.791 45.833 0.00 0.00 33.53 4.35
894 1123 2.545946 GCTCATTTTATCCTCACGCTCC 59.454 50.000 0.00 0.00 0.00 4.70
959 1188 2.114670 CGGTCCATTTCAGCGCCAT 61.115 57.895 2.29 0.00 0.00 4.40
960 1189 1.729881 GGTCCATTTCAGCGCCATC 59.270 57.895 2.29 0.00 0.00 3.51
961 1190 1.353103 GTCCATTTCAGCGCCATCG 59.647 57.895 2.29 0.00 39.07 3.84
962 1191 1.089481 GTCCATTTCAGCGCCATCGA 61.089 55.000 2.29 0.00 38.10 3.59
1049 1287 4.087892 CGTGGTCCTCCTGGCCTG 62.088 72.222 3.32 2.54 32.89 4.85
1050 1288 4.416738 GTGGTCCTCCTGGCCTGC 62.417 72.222 3.32 0.00 32.89 4.85
1051 1289 4.664267 TGGTCCTCCTGGCCTGCT 62.664 66.667 3.32 0.00 32.89 4.24
1581 1819 1.080974 GTTCGACGGCCTCTTCGAA 60.081 57.895 22.57 22.57 46.48 3.71
1594 1832 3.899545 TTCGAAGGGCCCTCCGTCT 62.900 63.158 31.07 12.27 41.10 4.18
1619 1857 0.391395 CTCACCAAGCTGCTGGAGAG 60.391 60.000 21.12 21.12 44.40 3.20
2208 2446 4.034258 TCGTCTGCCACCGTCGTC 62.034 66.667 0.00 0.00 0.00 4.20
2209 2447 4.337060 CGTCTGCCACCGTCGTCA 62.337 66.667 0.00 0.00 0.00 4.35
2212 2450 4.640855 CTGCCACCGTCGTCACGT 62.641 66.667 0.00 0.00 45.17 4.49
2213 2451 4.634133 TGCCACCGTCGTCACGTC 62.634 66.667 0.00 0.00 45.17 4.34
2275 2513 0.378962 GCTCGCGTCTCTACTGTGAT 59.621 55.000 5.77 0.00 0.00 3.06
2276 2514 1.598132 GCTCGCGTCTCTACTGTGATA 59.402 52.381 5.77 0.00 0.00 2.15
2277 2515 2.031807 GCTCGCGTCTCTACTGTGATAA 59.968 50.000 5.77 0.00 0.00 1.75
2280 2518 3.003378 TCGCGTCTCTACTGTGATAATGG 59.997 47.826 5.77 0.00 0.00 3.16
2283 2521 4.021894 GCGTCTCTACTGTGATAATGGGAT 60.022 45.833 0.00 0.00 0.00 3.85
2284 2522 5.465051 CGTCTCTACTGTGATAATGGGATG 58.535 45.833 0.00 0.00 0.00 3.51
2285 2523 5.010112 CGTCTCTACTGTGATAATGGGATGT 59.990 44.000 0.00 0.00 0.00 3.06
2287 2525 4.960938 TCTACTGTGATAATGGGATGTGC 58.039 43.478 0.00 0.00 0.00 4.57
2288 2526 2.936202 ACTGTGATAATGGGATGTGCC 58.064 47.619 0.00 0.00 0.00 5.01
2289 2527 1.875514 CTGTGATAATGGGATGTGCCG 59.124 52.381 0.00 0.00 37.63 5.69
2292 2530 0.593128 GATAATGGGATGTGCCGCAC 59.407 55.000 16.93 16.93 37.63 5.34
2336 2598 2.019984 GTCAGCCCATCACATTCTTCC 58.980 52.381 0.00 0.00 0.00 3.46
2341 2603 1.396653 CCATCACATTCTTCCTGCCC 58.603 55.000 0.00 0.00 0.00 5.36
2342 2604 1.064166 CCATCACATTCTTCCTGCCCT 60.064 52.381 0.00 0.00 0.00 5.19
2343 2605 2.295885 CATCACATTCTTCCTGCCCTC 58.704 52.381 0.00 0.00 0.00 4.30
2344 2606 0.620556 TCACATTCTTCCTGCCCTCC 59.379 55.000 0.00 0.00 0.00 4.30
2351 2613 1.002274 TTCCTGCCCTCCTCCTCTC 59.998 63.158 0.00 0.00 0.00 3.20
2360 2622 1.042229 CTCCTCCTCTCTCAGCCATG 58.958 60.000 0.00 0.00 0.00 3.66
2364 2626 2.048601 CTCCTCTCTCAGCCATGGATT 58.951 52.381 18.40 0.00 0.00 3.01
2372 2634 3.949754 TCTCAGCCATGGATTGTTGATTC 59.050 43.478 18.40 0.00 0.00 2.52
2373 2635 3.697542 CTCAGCCATGGATTGTTGATTCA 59.302 43.478 18.40 0.00 0.00 2.57
2374 2636 4.087907 TCAGCCATGGATTGTTGATTCAA 58.912 39.130 18.40 0.00 0.00 2.69
2375 2637 4.082081 TCAGCCATGGATTGTTGATTCAAC 60.082 41.667 18.40 20.27 43.78 3.18
2376 2638 4.081862 CAGCCATGGATTGTTGATTCAACT 60.082 41.667 25.49 10.42 43.85 3.16
2377 2639 4.529377 AGCCATGGATTGTTGATTCAACTT 59.471 37.500 25.49 15.50 43.85 2.66
2404 2667 1.308069 TGAGCCGCAGCAATTTCTCC 61.308 55.000 0.00 0.00 43.56 3.71
2420 2683 7.008628 GCAATTTCTCCGTGTAATTCATGAAAG 59.991 37.037 13.09 2.68 35.23 2.62
2454 2723 8.832521 ACAATACATCTTGTTCTTTTTACGTGA 58.167 29.630 0.00 0.00 35.90 4.35
2463 2732 4.735662 TCTTTTTACGTGATGGTTTCGG 57.264 40.909 0.00 0.00 0.00 4.30
2464 2733 3.499157 TCTTTTTACGTGATGGTTTCGGG 59.501 43.478 0.00 0.00 0.00 5.14
2466 2735 2.835580 TTACGTGATGGTTTCGGGAA 57.164 45.000 0.00 0.00 0.00 3.97
2467 2736 2.083167 TACGTGATGGTTTCGGGAAC 57.917 50.000 0.00 0.00 37.53 3.62
2470 2742 0.515564 GTGATGGTTTCGGGAACACG 59.484 55.000 0.89 0.00 40.13 4.49
2504 2777 4.927782 GCCACACCGACACAGCCA 62.928 66.667 0.00 0.00 0.00 4.75
2582 2863 2.517598 CGACTTTACACGCTGCACT 58.482 52.632 0.00 0.00 0.00 4.40
2702 2990 3.066190 CAGGCCCACCACATGCAG 61.066 66.667 0.00 0.00 39.06 4.41
2706 2994 2.034532 CCCACCACATGCAGCAGA 59.965 61.111 0.00 0.00 0.00 4.26
2738 3033 2.489751 CGCTTCAAAATCCGGGGC 59.510 61.111 0.00 0.00 0.00 5.80
2746 3041 2.624674 AAAATCCGGGGCGATGAGGG 62.625 60.000 0.00 0.00 0.00 4.30
2747 3042 4.880426 ATCCGGGGCGATGAGGGT 62.880 66.667 0.00 0.00 0.00 4.34
2750 3045 4.227134 CGGGGCGATGAGGGTGAG 62.227 72.222 0.00 0.00 0.00 3.51
2751 3046 3.866582 GGGGCGATGAGGGTGAGG 61.867 72.222 0.00 0.00 0.00 3.86
2763 3058 1.227674 GGTGAGGCCCAGAATAGCG 60.228 63.158 0.00 0.00 0.00 4.26
2791 3090 1.451927 GCCATGCCATTCCACTCGA 60.452 57.895 0.00 0.00 0.00 4.04
2797 3096 1.424493 GCCATTCCACTCGAAGCTCG 61.424 60.000 0.00 0.00 42.10 5.03
2805 3104 3.843304 TCGAAGCTCGATCCTCCC 58.157 61.111 4.47 0.00 44.82 4.30
2806 3105 1.828660 TCGAAGCTCGATCCTCCCC 60.829 63.158 4.47 0.00 44.82 4.81
2807 3106 1.830408 CGAAGCTCGATCCTCCCCT 60.830 63.158 0.00 0.00 43.74 4.79
2808 3107 1.801309 CGAAGCTCGATCCTCCCCTC 61.801 65.000 0.00 0.00 43.74 4.30
2809 3108 0.757188 GAAGCTCGATCCTCCCCTCA 60.757 60.000 0.00 0.00 0.00 3.86
2810 3109 0.325671 AAGCTCGATCCTCCCCTCAA 60.326 55.000 0.00 0.00 0.00 3.02
2811 3110 0.325671 AGCTCGATCCTCCCCTCAAA 60.326 55.000 0.00 0.00 0.00 2.69
2812 3111 0.541863 GCTCGATCCTCCCCTCAAAA 59.458 55.000 0.00 0.00 0.00 2.44
2813 3112 1.065418 GCTCGATCCTCCCCTCAAAAA 60.065 52.381 0.00 0.00 0.00 1.94
2860 3159 3.426568 GCTGGCGCTGTCAGTTCC 61.427 66.667 7.64 3.83 37.61 3.62
2886 3189 2.772077 TTCCGATCAATTTCACCGGA 57.228 45.000 9.46 0.00 46.18 5.14
2905 3208 2.671177 CCAGACGGCTCGCAAGTTG 61.671 63.158 0.00 0.00 39.48 3.16
2913 3216 1.569479 GCTCGCAAGTTGAGGACCAC 61.569 60.000 7.16 0.00 39.48 4.16
2914 3217 0.034059 CTCGCAAGTTGAGGACCACT 59.966 55.000 7.16 0.00 39.48 4.00
2915 3218 0.249868 TCGCAAGTTGAGGACCACTG 60.250 55.000 7.16 0.00 39.48 3.66
2956 3263 1.073284 ACGGCAAGTAGACCCAAACAT 59.927 47.619 0.00 0.00 0.00 2.71
2957 3264 2.303600 ACGGCAAGTAGACCCAAACATA 59.696 45.455 0.00 0.00 0.00 2.29
2987 3294 2.171659 TGCAGTAAGAACCAAGGACACA 59.828 45.455 0.00 0.00 0.00 3.72
2988 3295 3.181445 TGCAGTAAGAACCAAGGACACAT 60.181 43.478 0.00 0.00 0.00 3.21
2989 3296 4.041075 TGCAGTAAGAACCAAGGACACATA 59.959 41.667 0.00 0.00 0.00 2.29
2990 3297 4.392138 GCAGTAAGAACCAAGGACACATAC 59.608 45.833 0.00 0.00 0.00 2.39
3019 3326 5.062528 TGCACGGATAAATAATCATCAGCA 58.937 37.500 0.00 0.00 36.20 4.41
3022 3329 5.702670 CACGGATAAATAATCATCAGCAGGT 59.297 40.000 0.00 0.00 36.20 4.00
3024 3331 7.387673 CACGGATAAATAATCATCAGCAGGTAA 59.612 37.037 0.00 0.00 36.20 2.85
3025 3332 7.936847 ACGGATAAATAATCATCAGCAGGTAAA 59.063 33.333 0.00 0.00 36.20 2.01
3026 3333 8.950210 CGGATAAATAATCATCAGCAGGTAAAT 58.050 33.333 0.00 0.00 36.20 1.40
3031 3338 9.584008 AAATAATCATCAGCAGGTAAATCAGAT 57.416 29.630 0.00 0.00 0.00 2.90
3032 3339 8.789825 ATAATCATCAGCAGGTAAATCAGATC 57.210 34.615 0.00 0.00 0.00 2.75
3034 3341 6.183810 TCATCAGCAGGTAAATCAGATCAT 57.816 37.500 0.00 0.00 0.00 2.45
3035 3342 5.995897 TCATCAGCAGGTAAATCAGATCATG 59.004 40.000 0.00 0.00 0.00 3.07
3036 3343 5.619132 TCAGCAGGTAAATCAGATCATGA 57.381 39.130 0.00 0.00 43.70 3.07
3052 3359 3.801698 TCATGATGCTGGAGCTACTTTC 58.198 45.455 0.00 0.00 42.66 2.62
3055 3362 4.226427 TGATGCTGGAGCTACTTTCATT 57.774 40.909 0.00 0.00 42.66 2.57
3059 3366 4.905429 TGCTGGAGCTACTTTCATTACAA 58.095 39.130 0.00 0.00 42.66 2.41
3063 3370 4.020928 TGGAGCTACTTTCATTACAACCGA 60.021 41.667 0.00 0.00 0.00 4.69
3064 3371 4.567159 GGAGCTACTTTCATTACAACCGAG 59.433 45.833 0.00 0.00 0.00 4.63
3077 3384 7.771361 TCATTACAACCGAGAAATTAAGGCATA 59.229 33.333 0.00 0.00 0.00 3.14
3079 3386 4.331717 ACAACCGAGAAATTAAGGCATACG 59.668 41.667 0.00 0.00 0.00 3.06
3080 3387 4.133013 ACCGAGAAATTAAGGCATACGT 57.867 40.909 0.00 0.00 0.00 3.57
3081 3388 5.266733 ACCGAGAAATTAAGGCATACGTA 57.733 39.130 0.00 0.00 0.00 3.57
3083 3390 5.045215 CCGAGAAATTAAGGCATACGTACA 58.955 41.667 0.00 0.00 0.00 2.90
3084 3391 5.051240 CCGAGAAATTAAGGCATACGTACAC 60.051 44.000 0.00 0.00 0.00 2.90
3085 3392 5.747197 CGAGAAATTAAGGCATACGTACACT 59.253 40.000 0.00 0.00 0.00 3.55
3086 3393 6.914215 CGAGAAATTAAGGCATACGTACACTA 59.086 38.462 0.00 0.00 0.00 2.74
3087 3394 7.594015 CGAGAAATTAAGGCATACGTACACTAT 59.406 37.037 0.00 0.00 0.00 2.12
3088 3395 8.589335 AGAAATTAAGGCATACGTACACTATG 57.411 34.615 0.00 0.00 0.00 2.23
3089 3396 8.202137 AGAAATTAAGGCATACGTACACTATGT 58.798 33.333 0.00 0.00 0.00 2.29
3091 3398 4.994907 AAGGCATACGTACACTATGTGA 57.005 40.909 0.00 0.00 36.96 3.58
3092 3399 4.994907 AGGCATACGTACACTATGTGAA 57.005 40.909 0.00 0.00 36.96 3.18
3140 3447 4.268359 ACTGCAGGGAGAAAGAAATGATC 58.732 43.478 19.93 0.00 0.00 2.92
3152 3459 1.004927 GAAATGATCACCGTAGCACGC 60.005 52.381 0.00 0.00 40.91 5.34
3162 3469 1.670083 GTAGCACGCGGGAAAAGGT 60.670 57.895 15.48 1.39 0.00 3.50
3168 3475 0.886043 ACGCGGGAAAAGGTAACACC 60.886 55.000 12.47 0.00 38.99 4.16
3169 3476 0.885596 CGCGGGAAAAGGTAACACCA 60.886 55.000 0.00 0.00 41.95 4.17
3170 3477 0.594602 GCGGGAAAAGGTAACACCAC 59.405 55.000 0.00 0.00 41.95 4.16
3171 3478 0.869730 CGGGAAAAGGTAACACCACG 59.130 55.000 0.00 0.00 41.95 4.94
3172 3479 0.594602 GGGAAAAGGTAACACCACGC 59.405 55.000 0.00 0.00 41.95 5.34
3173 3480 1.310904 GGAAAAGGTAACACCACGCA 58.689 50.000 0.00 0.00 41.95 5.24
3174 3481 1.883926 GGAAAAGGTAACACCACGCAT 59.116 47.619 0.00 0.00 41.95 4.73
3176 3483 2.561478 AAAGGTAACACCACGCATCT 57.439 45.000 0.00 0.00 41.95 2.90
3177 3484 3.688694 AAAGGTAACACCACGCATCTA 57.311 42.857 0.00 0.00 41.95 1.98
3178 3485 2.667473 AGGTAACACCACGCATCTAC 57.333 50.000 0.00 0.00 41.95 2.59
3181 3488 1.135315 GTAACACCACGCATCTACCGA 60.135 52.381 0.00 0.00 0.00 4.69
3182 3489 0.535335 AACACCACGCATCTACCGAT 59.465 50.000 0.00 0.00 0.00 4.18
3184 3491 0.179111 CACCACGCATCTACCGATGT 60.179 55.000 4.47 0.00 46.96 3.06
3230 3537 2.711009 ACTCAAGGACAGATGTTCCCAA 59.289 45.455 0.00 0.00 0.00 4.12
3234 3541 2.338809 AGGACAGATGTTCCCAACTCA 58.661 47.619 0.00 0.00 0.00 3.41
3235 3542 2.039084 AGGACAGATGTTCCCAACTCAC 59.961 50.000 0.00 0.00 0.00 3.51
3236 3543 2.427506 GACAGATGTTCCCAACTCACC 58.572 52.381 0.00 0.00 0.00 4.02
3237 3544 1.270839 ACAGATGTTCCCAACTCACCG 60.271 52.381 0.00 0.00 0.00 4.94
3238 3545 0.321653 AGATGTTCCCAACTCACCGC 60.322 55.000 0.00 0.00 0.00 5.68
3239 3546 0.605319 GATGTTCCCAACTCACCGCA 60.605 55.000 0.00 0.00 0.00 5.69
3240 3547 0.179004 ATGTTCCCAACTCACCGCAA 60.179 50.000 0.00 0.00 0.00 4.85
3241 3548 1.098712 TGTTCCCAACTCACCGCAAC 61.099 55.000 0.00 0.00 0.00 4.17
3242 3549 0.818040 GTTCCCAACTCACCGCAACT 60.818 55.000 0.00 0.00 0.00 3.16
3243 3550 0.817634 TTCCCAACTCACCGCAACTG 60.818 55.000 0.00 0.00 0.00 3.16
3244 3551 2.639286 CCAACTCACCGCAACTGC 59.361 61.111 0.00 0.00 37.78 4.40
3245 3552 1.893808 CCAACTCACCGCAACTGCT 60.894 57.895 0.00 0.00 39.32 4.24
3246 3553 0.602638 CCAACTCACCGCAACTGCTA 60.603 55.000 0.00 0.00 39.32 3.49
3247 3554 1.225855 CAACTCACCGCAACTGCTAA 58.774 50.000 0.00 0.00 39.32 3.09
3248 3555 1.601903 CAACTCACCGCAACTGCTAAA 59.398 47.619 0.00 0.00 39.32 1.85
3249 3556 1.512926 ACTCACCGCAACTGCTAAAG 58.487 50.000 0.00 0.00 39.32 1.85
3250 3557 1.202651 ACTCACCGCAACTGCTAAAGT 60.203 47.619 0.00 0.00 42.60 2.66
3251 3558 1.195448 CTCACCGCAACTGCTAAAGTG 59.805 52.381 0.00 3.02 39.81 3.16
3252 3559 0.944386 CACCGCAACTGCTAAAGTGT 59.056 50.000 0.00 0.00 39.81 3.55
3253 3560 1.069906 CACCGCAACTGCTAAAGTGTC 60.070 52.381 0.00 0.00 39.81 3.67
3254 3561 0.517316 CCGCAACTGCTAAAGTGTCC 59.483 55.000 0.00 0.00 39.81 4.02
3255 3562 0.163788 CGCAACTGCTAAAGTGTCCG 59.836 55.000 0.00 0.00 39.81 4.79
3256 3563 1.226746 GCAACTGCTAAAGTGTCCGT 58.773 50.000 0.00 0.00 39.81 4.69
3257 3564 2.409975 GCAACTGCTAAAGTGTCCGTA 58.590 47.619 0.00 0.00 39.81 4.02
3258 3565 3.000727 GCAACTGCTAAAGTGTCCGTAT 58.999 45.455 0.00 0.00 39.81 3.06
3259 3566 3.435671 GCAACTGCTAAAGTGTCCGTATT 59.564 43.478 0.00 0.00 39.81 1.89
3260 3567 4.628333 GCAACTGCTAAAGTGTCCGTATTA 59.372 41.667 0.00 0.00 39.81 0.98
3261 3568 5.121142 GCAACTGCTAAAGTGTCCGTATTAA 59.879 40.000 0.00 0.00 39.81 1.40
3262 3569 6.531439 CAACTGCTAAAGTGTCCGTATTAAC 58.469 40.000 0.00 0.00 39.81 2.01
3263 3570 5.786311 ACTGCTAAAGTGTCCGTATTAACA 58.214 37.500 0.00 0.00 37.88 2.41
3264 3571 5.636543 ACTGCTAAAGTGTCCGTATTAACAC 59.363 40.000 0.00 0.00 44.83 3.32
3270 3577 4.322101 GTGTCCGTATTAACACTTGCTG 57.678 45.455 0.00 0.00 41.97 4.41
3271 3578 3.744426 GTGTCCGTATTAACACTTGCTGT 59.256 43.478 0.00 0.00 41.97 4.40
3272 3579 4.925054 GTGTCCGTATTAACACTTGCTGTA 59.075 41.667 0.00 0.00 41.97 2.74
3273 3580 5.061808 GTGTCCGTATTAACACTTGCTGTAG 59.938 44.000 0.00 0.00 41.97 2.74
3274 3581 5.166398 GTCCGTATTAACACTTGCTGTAGT 58.834 41.667 0.00 0.00 30.51 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 5.994887 ACTACTGTGCAACGACATAAAAA 57.005 34.783 0.00 0.00 42.39 1.94
10 11 5.994887 AACTACTGTGCAACGACATAAAA 57.005 34.783 0.00 0.00 42.39 1.52
11 12 5.994887 AAACTACTGTGCAACGACATAAA 57.005 34.783 0.00 0.00 42.39 1.40
12 13 5.994887 AAAACTACTGTGCAACGACATAA 57.005 34.783 0.00 0.00 42.39 1.90
13 14 7.094631 AGATAAAACTACTGTGCAACGACATA 58.905 34.615 0.00 0.00 42.39 2.29
14 15 5.932303 AGATAAAACTACTGTGCAACGACAT 59.068 36.000 0.00 0.00 42.39 3.06
15 16 5.294356 AGATAAAACTACTGTGCAACGACA 58.706 37.500 0.00 0.00 42.39 4.35
16 17 5.840940 AGATAAAACTACTGTGCAACGAC 57.159 39.130 0.00 0.00 42.39 4.34
17 18 7.544622 AGATAGATAAAACTACTGTGCAACGA 58.455 34.615 0.00 0.00 42.39 3.85
18 19 7.757097 AGATAGATAAAACTACTGTGCAACG 57.243 36.000 0.00 0.00 42.39 4.10
87 88 9.562583 ACGAACATTGCGTACATATTTTTAAAT 57.437 25.926 0.00 0.00 40.65 1.40
88 89 8.841822 CACGAACATTGCGTACATATTTTTAAA 58.158 29.630 0.00 0.00 40.44 1.52
89 90 7.007546 GCACGAACATTGCGTACATATTTTTAA 59.992 33.333 0.00 0.00 40.44 1.52
90 91 6.466413 GCACGAACATTGCGTACATATTTTTA 59.534 34.615 0.00 0.00 40.44 1.52
91 92 5.285134 GCACGAACATTGCGTACATATTTTT 59.715 36.000 0.00 0.00 40.44 1.94
92 93 4.791163 GCACGAACATTGCGTACATATTTT 59.209 37.500 0.00 0.00 40.44 1.82
93 94 4.339429 GCACGAACATTGCGTACATATTT 58.661 39.130 0.00 0.00 40.44 1.40
94 95 3.935450 GCACGAACATTGCGTACATATT 58.065 40.909 0.00 0.00 40.44 1.28
95 96 3.585748 GCACGAACATTGCGTACATAT 57.414 42.857 0.00 0.00 40.44 1.78
97 98 3.967734 GCACGAACATTGCGTACAT 57.032 47.368 0.00 0.00 40.44 2.29
103 104 0.651610 CGCTATCGCACGAACATTGC 60.652 55.000 0.00 0.00 36.57 3.56
104 105 3.404307 CGCTATCGCACGAACATTG 57.596 52.632 0.00 0.00 35.30 2.82
120 121 2.499603 GCTAAAATGCAGCACGCGC 61.500 57.895 5.73 0.00 46.97 6.86
121 122 2.210375 CGCTAAAATGCAGCACGCG 61.210 57.895 3.53 3.53 46.97 6.01
122 123 1.154225 ACGCTAAAATGCAGCACGC 60.154 52.632 0.00 0.00 39.04 5.34
123 124 0.794229 CCACGCTAAAATGCAGCACG 60.794 55.000 0.00 0.00 39.04 5.34
124 125 0.240945 ACCACGCTAAAATGCAGCAC 59.759 50.000 0.00 0.00 39.04 4.40
125 126 0.958091 AACCACGCTAAAATGCAGCA 59.042 45.000 0.00 0.00 39.04 4.41
126 127 1.339711 CAACCACGCTAAAATGCAGC 58.660 50.000 0.00 0.00 35.61 5.25
127 128 1.068333 AGCAACCACGCTAAAATGCAG 60.068 47.619 0.00 0.00 41.55 4.41
128 129 0.958091 AGCAACCACGCTAAAATGCA 59.042 45.000 0.00 0.00 41.55 3.96
129 130 1.068610 TCAGCAACCACGCTAAAATGC 60.069 47.619 0.00 0.00 41.38 3.56
130 131 2.987413 TCAGCAACCACGCTAAAATG 57.013 45.000 0.00 0.00 41.38 2.32
131 132 3.317993 AGTTTCAGCAACCACGCTAAAAT 59.682 39.130 0.00 0.00 41.38 1.82
132 133 2.685897 AGTTTCAGCAACCACGCTAAAA 59.314 40.909 0.00 0.00 41.38 1.52
133 134 2.294074 AGTTTCAGCAACCACGCTAAA 58.706 42.857 0.00 0.00 41.38 1.85
134 135 1.961793 AGTTTCAGCAACCACGCTAA 58.038 45.000 0.00 0.00 41.38 3.09
135 136 2.409975 GTAGTTTCAGCAACCACGCTA 58.590 47.619 0.00 0.00 41.38 4.26
136 137 1.226746 GTAGTTTCAGCAACCACGCT 58.773 50.000 0.00 0.00 45.21 5.07
137 138 0.110823 CGTAGTTTCAGCAACCACGC 60.111 55.000 0.00 0.00 42.33 5.34
139 140 0.110823 CGCGTAGTTTCAGCAACCAC 60.111 55.000 0.00 0.00 35.77 4.16
140 141 1.837538 GCGCGTAGTTTCAGCAACCA 61.838 55.000 8.43 0.00 35.77 3.67
141 142 1.154469 GCGCGTAGTTTCAGCAACC 60.154 57.895 8.43 0.00 35.77 3.77
142 143 0.721483 GTGCGCGTAGTTTCAGCAAC 60.721 55.000 8.43 0.00 39.67 4.17
143 144 1.567537 GTGCGCGTAGTTTCAGCAA 59.432 52.632 8.43 0.00 39.67 3.91
144 145 2.653967 CGTGCGCGTAGTTTCAGCA 61.654 57.895 12.43 0.00 35.27 4.41
145 146 2.093983 CGTGCGCGTAGTTTCAGC 59.906 61.111 12.43 0.00 0.00 4.26
146 147 2.093983 GCGTGCGCGTAGTTTCAG 59.906 61.111 22.18 0.00 40.81 3.02
156 157 1.008846 GCGTTAAAATTTAGCGTGCGC 60.009 47.619 19.80 8.67 42.33 6.09
157 158 1.245758 CGCGTTAAAATTTAGCGTGCG 59.754 47.619 19.04 12.94 44.96 5.34
158 159 2.925224 CGCGTTAAAATTTAGCGTGC 57.075 45.000 19.04 6.13 44.96 5.34
162 163 1.582052 GCAGCCGCGTTAAAATTTAGC 59.418 47.619 4.92 0.00 0.00 3.09
163 164 2.845967 CAGCAGCCGCGTTAAAATTTAG 59.154 45.455 4.92 0.00 45.49 1.85
164 165 2.414824 CCAGCAGCCGCGTTAAAATTTA 60.415 45.455 4.92 0.00 45.49 1.40
165 166 1.668628 CCAGCAGCCGCGTTAAAATTT 60.669 47.619 4.92 0.00 45.49 1.82
166 167 0.109319 CCAGCAGCCGCGTTAAAATT 60.109 50.000 4.92 0.00 45.49 1.82
167 168 0.958382 TCCAGCAGCCGCGTTAAAAT 60.958 50.000 4.92 0.00 45.49 1.82
168 169 1.573829 CTCCAGCAGCCGCGTTAAAA 61.574 55.000 4.92 0.00 45.49 1.52
169 170 2.031314 TCCAGCAGCCGCGTTAAA 59.969 55.556 4.92 0.00 45.49 1.52
170 171 2.434185 CTCCAGCAGCCGCGTTAA 60.434 61.111 4.92 0.00 45.49 2.01
171 172 4.451150 CCTCCAGCAGCCGCGTTA 62.451 66.667 4.92 0.00 45.49 3.18
208 209 4.877251 AGTTTGCAGTACGTCACCTAAAAA 59.123 37.500 0.00 0.00 0.00 1.94
209 210 4.444536 AGTTTGCAGTACGTCACCTAAAA 58.555 39.130 0.00 0.00 0.00 1.52
210 211 4.062677 AGTTTGCAGTACGTCACCTAAA 57.937 40.909 0.00 0.00 0.00 1.85
211 212 3.738830 AGTTTGCAGTACGTCACCTAA 57.261 42.857 0.00 0.00 0.00 2.69
212 213 4.703575 AGATAGTTTGCAGTACGTCACCTA 59.296 41.667 0.00 0.00 0.00 3.08
213 214 3.510360 AGATAGTTTGCAGTACGTCACCT 59.490 43.478 0.00 0.00 0.00 4.00
214 215 3.846360 AGATAGTTTGCAGTACGTCACC 58.154 45.455 0.00 0.00 0.00 4.02
215 216 5.840940 AAAGATAGTTTGCAGTACGTCAC 57.159 39.130 0.00 0.00 0.00 3.67
216 217 6.090358 GCTAAAAGATAGTTTGCAGTACGTCA 59.910 38.462 0.00 0.00 0.00 4.35
217 218 6.090358 TGCTAAAAGATAGTTTGCAGTACGTC 59.910 38.462 0.00 0.00 0.00 4.34
218 219 5.929992 TGCTAAAAGATAGTTTGCAGTACGT 59.070 36.000 0.00 0.00 0.00 3.57
219 220 6.241385 GTGCTAAAAGATAGTTTGCAGTACG 58.759 40.000 0.00 0.00 30.54 3.67
220 221 6.241385 CGTGCTAAAAGATAGTTTGCAGTAC 58.759 40.000 0.00 0.00 30.54 2.73
221 222 5.350365 CCGTGCTAAAAGATAGTTTGCAGTA 59.650 40.000 0.00 0.00 30.54 2.74
222 223 4.154195 CCGTGCTAAAAGATAGTTTGCAGT 59.846 41.667 0.00 0.00 30.54 4.40
223 224 4.651994 CCGTGCTAAAAGATAGTTTGCAG 58.348 43.478 0.00 0.00 30.54 4.41
224 225 3.119990 GCCGTGCTAAAAGATAGTTTGCA 60.120 43.478 0.00 0.00 0.00 4.08
225 226 3.127030 AGCCGTGCTAAAAGATAGTTTGC 59.873 43.478 0.00 0.00 36.99 3.68
226 227 4.154195 ACAGCCGTGCTAAAAGATAGTTTG 59.846 41.667 0.00 0.00 36.40 2.93
227 228 4.324267 ACAGCCGTGCTAAAAGATAGTTT 58.676 39.130 0.00 0.00 36.40 2.66
228 229 3.939066 ACAGCCGTGCTAAAAGATAGTT 58.061 40.909 0.00 0.00 36.40 2.24
229 230 3.611766 ACAGCCGTGCTAAAAGATAGT 57.388 42.857 0.00 0.00 36.40 2.12
230 231 3.063997 CCAACAGCCGTGCTAAAAGATAG 59.936 47.826 0.00 0.00 36.40 2.08
231 232 3.006940 CCAACAGCCGTGCTAAAAGATA 58.993 45.455 0.00 0.00 36.40 1.98
232 233 1.812571 CCAACAGCCGTGCTAAAAGAT 59.187 47.619 0.00 0.00 36.40 2.40
233 234 1.202710 TCCAACAGCCGTGCTAAAAGA 60.203 47.619 0.00 0.00 36.40 2.52
234 235 1.197721 CTCCAACAGCCGTGCTAAAAG 59.802 52.381 0.00 0.00 36.40 2.27
235 236 1.202710 TCTCCAACAGCCGTGCTAAAA 60.203 47.619 0.00 0.00 36.40 1.52
236 237 0.394938 TCTCCAACAGCCGTGCTAAA 59.605 50.000 0.00 0.00 36.40 1.85
237 238 0.613260 ATCTCCAACAGCCGTGCTAA 59.387 50.000 0.00 0.00 36.40 3.09
238 239 0.108186 CATCTCCAACAGCCGTGCTA 60.108 55.000 0.00 0.00 36.40 3.49
239 240 1.376424 CATCTCCAACAGCCGTGCT 60.376 57.895 0.00 0.00 40.77 4.40
240 241 3.044059 GCATCTCCAACAGCCGTGC 62.044 63.158 0.00 0.00 0.00 5.34
241 242 0.957395 AAGCATCTCCAACAGCCGTG 60.957 55.000 0.00 0.00 0.00 4.94
242 243 0.250901 AAAGCATCTCCAACAGCCGT 60.251 50.000 0.00 0.00 0.00 5.68
243 244 0.169672 CAAAGCATCTCCAACAGCCG 59.830 55.000 0.00 0.00 0.00 5.52
244 245 1.538047 TCAAAGCATCTCCAACAGCC 58.462 50.000 0.00 0.00 0.00 4.85
245 246 2.734492 GCATCAAAGCATCTCCAACAGC 60.734 50.000 0.00 0.00 0.00 4.40
246 247 2.753452 AGCATCAAAGCATCTCCAACAG 59.247 45.455 0.00 0.00 36.85 3.16
247 248 2.799017 AGCATCAAAGCATCTCCAACA 58.201 42.857 0.00 0.00 36.85 3.33
248 249 3.730061 CGAAGCATCAAAGCATCTCCAAC 60.730 47.826 0.00 0.00 36.85 3.77
249 250 2.421073 CGAAGCATCAAAGCATCTCCAA 59.579 45.455 0.00 0.00 36.85 3.53
250 251 2.011947 CGAAGCATCAAAGCATCTCCA 58.988 47.619 0.00 0.00 36.85 3.86
251 252 2.752144 CGAAGCATCAAAGCATCTCC 57.248 50.000 0.00 0.00 36.85 3.71
280 281 4.049186 GAGTCTGCTTCTTTGTCACGTAA 58.951 43.478 0.00 0.00 0.00 3.18
302 303 4.152759 TCACTTTATTTACGGTTTCGGCTG 59.847 41.667 0.00 0.00 41.39 4.85
396 397 8.079203 CCTCTCTGTACATAGTAGTATTGCAAG 58.921 40.741 4.94 0.00 0.00 4.01
397 398 7.778382 TCCTCTCTGTACATAGTAGTATTGCAA 59.222 37.037 0.00 0.00 0.00 4.08
398 399 7.287810 TCCTCTCTGTACATAGTAGTATTGCA 58.712 38.462 8.01 0.00 0.00 4.08
399 400 7.747155 TCCTCTCTGTACATAGTAGTATTGC 57.253 40.000 8.01 0.00 0.00 3.56
402 403 9.696572 TGTTTTCCTCTCTGTACATAGTAGTAT 57.303 33.333 8.01 0.00 0.00 2.12
403 404 9.175312 CTGTTTTCCTCTCTGTACATAGTAGTA 57.825 37.037 8.01 0.00 0.00 1.82
404 405 7.889073 TCTGTTTTCCTCTCTGTACATAGTAGT 59.111 37.037 8.01 0.00 0.00 2.73
405 406 8.282455 TCTGTTTTCCTCTCTGTACATAGTAG 57.718 38.462 8.01 4.94 0.00 2.57
406 407 7.148052 GCTCTGTTTTCCTCTCTGTACATAGTA 60.148 40.741 8.01 0.00 0.00 1.82
407 408 6.350612 GCTCTGTTTTCCTCTCTGTACATAGT 60.351 42.308 8.01 0.00 0.00 2.12
408 409 6.039616 GCTCTGTTTTCCTCTCTGTACATAG 58.960 44.000 0.00 0.00 0.00 2.23
409 410 5.717178 AGCTCTGTTTTCCTCTCTGTACATA 59.283 40.000 0.00 0.00 0.00 2.29
410 411 4.530161 AGCTCTGTTTTCCTCTCTGTACAT 59.470 41.667 0.00 0.00 0.00 2.29
411 412 3.898123 AGCTCTGTTTTCCTCTCTGTACA 59.102 43.478 0.00 0.00 0.00 2.90
412 413 4.021894 TCAGCTCTGTTTTCCTCTCTGTAC 60.022 45.833 0.00 0.00 0.00 2.90
413 414 4.021894 GTCAGCTCTGTTTTCCTCTCTGTA 60.022 45.833 0.00 0.00 0.00 2.74
649 867 3.951775 TTATTTGGTGGTGGTCATTGC 57.048 42.857 0.00 0.00 0.00 3.56
658 876 3.508402 CCTAGCCGTTTTTATTTGGTGGT 59.492 43.478 0.00 0.00 0.00 4.16
673 891 0.676736 GTCTCCTCCATTCCTAGCCG 59.323 60.000 0.00 0.00 0.00 5.52
867 1096 4.614946 GTGAGGATAAAATGAGCAATGGC 58.385 43.478 0.00 0.00 41.61 4.40
959 1188 0.746659 ACGCACTGATGATGGATCGA 59.253 50.000 0.00 0.00 33.17 3.59
960 1189 1.135046 GACGCACTGATGATGGATCG 58.865 55.000 0.00 0.00 33.17 3.69
961 1190 1.135046 CGACGCACTGATGATGGATC 58.865 55.000 0.00 0.00 0.00 3.36
962 1191 0.249615 CCGACGCACTGATGATGGAT 60.250 55.000 0.00 0.00 0.00 3.41
1157 1395 2.396955 CGCGTCTCCGTCAGGTACT 61.397 63.158 0.00 0.00 39.05 2.73
1581 1819 4.332543 TTGGAGACGGAGGGCCCT 62.333 66.667 29.18 29.18 0.00 5.19
1587 1825 1.185618 TGGTGAGGTTGGAGACGGAG 61.186 60.000 0.00 0.00 0.00 4.63
1594 1832 1.228245 GCAGCTTGGTGAGGTTGGA 60.228 57.895 3.84 0.00 32.70 3.53
1657 1895 4.373116 GTCCTTGAGCACGCCGGA 62.373 66.667 5.05 0.00 0.00 5.14
1659 1897 1.805945 GTAGTCCTTGAGCACGCCG 60.806 63.158 0.00 0.00 0.00 6.46
1971 2209 2.745100 TCGTCCAGGACCGTCTCG 60.745 66.667 14.46 1.00 0.00 4.04
2275 2513 1.301293 TGTGCGGCACATCCCATTA 59.699 52.632 30.40 6.56 39.62 1.90
2276 2514 2.035469 TGTGCGGCACATCCCATT 59.965 55.556 30.40 0.00 39.62 3.16
2284 2522 2.774799 GGAATGGGATGTGCGGCAC 61.775 63.158 25.55 25.55 34.56 5.01
2285 2523 2.440065 GGAATGGGATGTGCGGCA 60.440 61.111 0.00 0.00 0.00 5.69
2287 2525 2.901840 CCGGAATGGGATGTGCGG 60.902 66.667 0.00 0.00 42.47 5.69
2288 2526 3.585990 GCCGGAATGGGATGTGCG 61.586 66.667 5.05 0.00 38.63 5.34
2289 2527 3.219198 GGCCGGAATGGGATGTGC 61.219 66.667 5.05 0.00 38.63 4.57
2292 2530 0.756442 AATGTGGCCGGAATGGGATG 60.756 55.000 5.05 0.00 38.63 3.51
2293 2531 0.468029 GAATGTGGCCGGAATGGGAT 60.468 55.000 5.05 0.00 38.63 3.85
2336 2598 0.756442 CTGAGAGAGGAGGAGGGCAG 60.756 65.000 0.00 0.00 0.00 4.85
2341 2603 1.042229 CATGGCTGAGAGAGGAGGAG 58.958 60.000 0.00 0.00 0.00 3.69
2342 2604 0.398239 CCATGGCTGAGAGAGGAGGA 60.398 60.000 0.00 0.00 0.00 3.71
2343 2605 0.398239 TCCATGGCTGAGAGAGGAGG 60.398 60.000 6.96 0.00 0.00 4.30
2344 2606 1.719529 ATCCATGGCTGAGAGAGGAG 58.280 55.000 6.96 0.00 0.00 3.69
2351 2613 3.697542 TGAATCAACAATCCATGGCTGAG 59.302 43.478 17.73 10.85 31.10 3.35
2360 2622 5.927689 TGCAATCAAGTTGAATCAACAATCC 59.072 36.000 25.63 11.89 45.66 3.01
2364 2626 6.086785 TCATGCAATCAAGTTGAATCAACA 57.913 33.333 25.63 7.89 45.66 3.33
2372 2634 1.904144 CGGCTCATGCAATCAAGTTG 58.096 50.000 0.00 0.00 41.91 3.16
2373 2635 0.171903 GCGGCTCATGCAATCAAGTT 59.828 50.000 0.00 0.00 41.91 2.66
2374 2636 0.961857 TGCGGCTCATGCAATCAAGT 60.962 50.000 0.00 0.00 39.87 3.16
2375 2637 0.248498 CTGCGGCTCATGCAATCAAG 60.248 55.000 0.00 0.00 42.70 3.02
2376 2638 1.804598 CTGCGGCTCATGCAATCAA 59.195 52.632 0.00 0.00 42.70 2.57
2377 2639 2.767445 GCTGCGGCTCATGCAATCA 61.767 57.895 11.21 0.00 42.70 2.57
2420 2683 7.076842 AGAACAAGATGTATTGTACACATGC 57.923 36.000 0.00 0.00 42.49 4.06
2448 2717 1.343789 TGTTCCCGAAACCATCACGTA 59.656 47.619 0.00 0.00 37.03 3.57
2454 2723 1.519408 CTTCGTGTTCCCGAAACCAT 58.481 50.000 0.00 0.00 45.28 3.55
2470 2742 1.362406 GGCTGCTCTGTAACGGCTTC 61.362 60.000 0.00 0.00 38.28 3.86
2504 2777 2.181525 GTGCGCGGAAATGGCAAT 59.818 55.556 8.83 0.00 38.58 3.56
2582 2863 6.838090 TGCTCCATCCAATTTACAATTCCATA 59.162 34.615 0.00 0.00 0.00 2.74
2688 2976 3.755628 CTGCTGCATGTGGTGGGC 61.756 66.667 1.31 0.00 0.00 5.36
2702 2990 3.830192 CCGGCAAATGGGCTCTGC 61.830 66.667 0.00 0.00 40.61 4.26
2703 2991 3.142838 CCCGGCAAATGGGCTCTG 61.143 66.667 0.00 0.00 40.47 3.35
2746 3041 0.249657 CTCGCTATTCTGGGCCTCAC 60.250 60.000 4.53 0.00 0.00 3.51
2747 3042 0.687757 ACTCGCTATTCTGGGCCTCA 60.688 55.000 4.53 0.00 0.00 3.86
2748 3043 0.249657 CACTCGCTATTCTGGGCCTC 60.250 60.000 4.53 0.00 0.00 4.70
2749 3044 1.826024 CACTCGCTATTCTGGGCCT 59.174 57.895 4.53 0.00 0.00 5.19
2750 3045 1.889573 GCACTCGCTATTCTGGGCC 60.890 63.158 0.00 0.00 34.30 5.80
2751 3046 2.240500 CGCACTCGCTATTCTGGGC 61.241 63.158 0.00 0.00 35.30 5.36
2791 3090 0.325671 TTGAGGGGAGGATCGAGCTT 60.326 55.000 0.00 0.00 34.37 3.74
2824 3123 0.386605 CTCATCCGGATCGAGCTTCG 60.387 60.000 15.88 0.19 42.10 3.79
2825 3124 0.665972 GCTCATCCGGATCGAGCTTC 60.666 60.000 36.10 21.73 46.86 3.86
2826 3125 1.365633 GCTCATCCGGATCGAGCTT 59.634 57.895 36.10 12.32 46.86 3.74
2827 3126 3.046870 GCTCATCCGGATCGAGCT 58.953 61.111 36.10 12.95 46.86 4.09
2829 3128 1.288439 CCAGCTCATCCGGATCGAG 59.712 63.158 26.62 26.62 0.00 4.04
2830 3129 2.861101 GCCAGCTCATCCGGATCGA 61.861 63.158 15.88 14.45 0.00 3.59
2831 3130 2.356793 GCCAGCTCATCCGGATCG 60.357 66.667 15.88 10.01 0.00 3.69
2886 3189 3.165160 AACTTGCGAGCCGTCTGGT 62.165 57.895 0.00 0.00 37.67 4.00
2894 3197 1.301716 TGGTCCTCAACTTGCGAGC 60.302 57.895 0.00 0.00 0.00 5.03
2898 3201 1.202698 AGACAGTGGTCCTCAACTTGC 60.203 52.381 0.00 0.00 45.48 4.01
2905 3208 2.520069 TCAGAAGAGACAGTGGTCCTC 58.480 52.381 0.00 0.00 45.48 3.71
2913 3216 9.760660 CCGTTAATTATTTTTCAGAAGAGACAG 57.239 33.333 0.00 0.00 0.00 3.51
2914 3217 8.234546 GCCGTTAATTATTTTTCAGAAGAGACA 58.765 33.333 0.00 0.00 0.00 3.41
2915 3218 8.234546 TGCCGTTAATTATTTTTCAGAAGAGAC 58.765 33.333 0.00 0.00 0.00 3.36
2956 3263 6.659745 TGGTTCTTACTGCAGAGTTTAGTA 57.340 37.500 23.35 0.00 33.21 1.82
2957 3264 5.546621 TGGTTCTTACTGCAGAGTTTAGT 57.453 39.130 23.35 0.00 33.21 2.24
2987 3294 9.719355 TGATTATTTATCCGTGCATGTTAGTAT 57.281 29.630 4.96 0.00 31.87 2.12
2988 3295 9.719355 ATGATTATTTATCCGTGCATGTTAGTA 57.281 29.630 4.96 0.00 31.87 1.82
2989 3296 8.621532 ATGATTATTTATCCGTGCATGTTAGT 57.378 30.769 4.96 0.00 31.87 2.24
2990 3297 8.720562 TGATGATTATTTATCCGTGCATGTTAG 58.279 33.333 4.96 0.00 31.87 2.34
3019 3326 5.072736 TCCAGCATCATGATCTGATTTACCT 59.927 40.000 24.74 2.76 42.07 3.08
3022 3329 5.001874 GCTCCAGCATCATGATCTGATTTA 58.998 41.667 24.74 13.04 42.07 1.40
3024 3331 3.073209 AGCTCCAGCATCATGATCTGATT 59.927 43.478 24.74 11.92 42.91 2.57
3025 3332 2.640332 AGCTCCAGCATCATGATCTGAT 59.360 45.455 24.74 8.54 45.78 2.90
3026 3333 2.047830 AGCTCCAGCATCATGATCTGA 58.952 47.619 24.74 15.27 45.16 3.27
3027 3334 2.552599 AGCTCCAGCATCATGATCTG 57.447 50.000 19.85 19.85 45.16 2.90
3029 3336 3.681593 AGTAGCTCCAGCATCATGATC 57.318 47.619 4.86 1.17 45.16 2.92
3031 3338 3.198417 TGAAAGTAGCTCCAGCATCATGA 59.802 43.478 0.00 0.00 45.16 3.07
3032 3339 3.538591 TGAAAGTAGCTCCAGCATCATG 58.461 45.455 0.48 0.00 45.16 3.07
3034 3341 3.920231 ATGAAAGTAGCTCCAGCATCA 57.080 42.857 0.48 0.00 45.16 3.07
3035 3342 5.118990 TGTAATGAAAGTAGCTCCAGCATC 58.881 41.667 0.48 0.00 45.16 3.91
3036 3343 5.102953 TGTAATGAAAGTAGCTCCAGCAT 57.897 39.130 0.48 0.00 45.16 3.79
3052 3359 6.189677 TGCCTTAATTTCTCGGTTGTAATG 57.810 37.500 0.00 0.00 0.00 1.90
3055 3362 5.521010 CGTATGCCTTAATTTCTCGGTTGTA 59.479 40.000 0.00 0.00 0.00 2.41
3059 3366 4.133013 ACGTATGCCTTAATTTCTCGGT 57.867 40.909 0.00 0.00 0.00 4.69
3063 3370 8.202137 ACATAGTGTACGTATGCCTTAATTTCT 58.798 33.333 12.71 0.00 32.00 2.52
3064 3371 8.273557 CACATAGTGTACGTATGCCTTAATTTC 58.726 37.037 12.71 0.00 32.00 2.17
3071 3378 4.401519 ACTTCACATAGTGTACGTATGCCT 59.598 41.667 12.71 0.00 34.79 4.75
3083 3390 3.578716 AGTACTGGCACACTTCACATAGT 59.421 43.478 0.00 0.00 0.00 2.12
3084 3391 4.193826 AGTACTGGCACACTTCACATAG 57.806 45.455 0.00 0.00 0.00 2.23
3085 3392 4.202315 ACAAGTACTGGCACACTTCACATA 60.202 41.667 0.00 0.00 32.72 2.29
3086 3393 3.141398 CAAGTACTGGCACACTTCACAT 58.859 45.455 0.00 0.00 32.72 3.21
3087 3394 2.093181 ACAAGTACTGGCACACTTCACA 60.093 45.455 0.00 0.00 32.72 3.58
3088 3395 2.561569 ACAAGTACTGGCACACTTCAC 58.438 47.619 0.00 0.00 32.72 3.18
3089 3396 3.386726 ACTACAAGTACTGGCACACTTCA 59.613 43.478 0.00 0.00 32.72 3.02
3091 3398 4.127171 CAACTACAAGTACTGGCACACTT 58.873 43.478 0.00 4.33 35.38 3.16
3092 3399 3.728845 CAACTACAAGTACTGGCACACT 58.271 45.455 0.00 0.00 0.00 3.55
3096 3403 2.158885 TGTGCAACTACAAGTACTGGCA 60.159 45.455 0.00 0.00 38.04 4.92
3097 3404 2.489971 TGTGCAACTACAAGTACTGGC 58.510 47.619 0.00 0.00 38.04 4.85
3098 3405 4.468095 GTTGTGCAACTACAAGTACTGG 57.532 45.455 7.72 0.00 42.23 4.00
3123 3430 3.264450 ACGGTGATCATTTCTTTCTCCCT 59.736 43.478 0.00 0.00 0.00 4.20
3127 3434 4.631813 GTGCTACGGTGATCATTTCTTTCT 59.368 41.667 0.00 0.00 0.00 2.52
3152 3459 0.869730 CGTGGTGTTACCTTTTCCCG 59.130 55.000 0.00 0.00 39.58 5.14
3162 3469 1.175654 TCGGTAGATGCGTGGTGTTA 58.824 50.000 0.00 0.00 0.00 2.41
3178 3485 1.746239 TGATGCAGCACCACATCGG 60.746 57.895 0.00 0.00 44.57 4.18
3181 3488 3.276281 ATGTGATGCAGCACCACAT 57.724 47.368 27.49 27.49 44.06 3.21
3182 3489 0.250814 TCATGTGATGCAGCACCACA 60.251 50.000 30.53 25.32 43.77 4.17
3183 3490 1.065102 GATCATGTGATGCAGCACCAC 59.935 52.381 30.53 13.66 37.99 4.16
3184 3491 1.340211 TGATCATGTGATGCAGCACCA 60.340 47.619 30.53 18.39 37.99 4.17
3185 3492 1.385528 TGATCATGTGATGCAGCACC 58.614 50.000 30.53 16.01 37.99 5.01
3186 3493 3.181490 ACATTGATCATGTGATGCAGCAC 60.181 43.478 27.61 27.61 45.12 4.40
3187 3494 3.020984 ACATTGATCATGTGATGCAGCA 58.979 40.909 0.00 0.00 45.12 4.41
3237 3544 1.226746 ACGGACACTTTAGCAGTTGC 58.773 50.000 0.00 0.00 42.49 4.17
3238 3545 6.146510 TGTTAATACGGACACTTTAGCAGTTG 59.853 38.462 0.00 0.00 30.92 3.16
3239 3546 6.146673 GTGTTAATACGGACACTTTAGCAGTT 59.853 38.462 0.00 0.00 42.13 3.16
3240 3547 5.636543 GTGTTAATACGGACACTTTAGCAGT 59.363 40.000 0.00 0.00 42.13 4.40
3241 3548 6.091123 GTGTTAATACGGACACTTTAGCAG 57.909 41.667 0.00 0.00 42.13 4.24
3249 3556 3.744426 ACAGCAAGTGTTAATACGGACAC 59.256 43.478 0.00 0.00 44.93 3.67
3250 3557 3.997762 ACAGCAAGTGTTAATACGGACA 58.002 40.909 0.00 0.00 34.94 4.02
3251 3558 5.166398 ACTACAGCAAGTGTTAATACGGAC 58.834 41.667 0.00 0.00 40.94 4.79
3252 3559 5.395682 ACTACAGCAAGTGTTAATACGGA 57.604 39.130 0.00 0.00 40.94 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.