Multiple sequence alignment - TraesCS4D01G317400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G317400 chr4D 100.000 5913 0 0 1 5913 482361507 482355595 0.000000e+00 10920.0
1 TraesCS4D01G317400 chr4D 87.829 912 64 29 672 1560 482255645 482254758 0.000000e+00 1026.0
2 TraesCS4D01G317400 chr4D 83.118 930 93 30 1569 2460 482254654 482253751 0.000000e+00 789.0
3 TraesCS4D01G317400 chr4D 84.615 806 89 20 4718 5493 165592377 165591577 0.000000e+00 769.0
4 TraesCS4D01G317400 chr4D 80.274 583 100 8 3580 4150 391723265 391722686 5.480000e-115 425.0
5 TraesCS4D01G317400 chr4D 80.762 499 82 7 3580 4067 439143712 439143217 1.560000e-100 377.0
6 TraesCS4D01G317400 chr4D 86.349 315 37 5 211 525 482328494 482328186 7.340000e-89 339.0
7 TraesCS4D01G317400 chr5A 91.643 2836 161 47 115 2917 660202236 660205028 0.000000e+00 3855.0
8 TraesCS4D01G317400 chr5A 83.333 792 76 24 1695 2460 660251587 660252348 0.000000e+00 680.0
9 TraesCS4D01G317400 chr5A 86.453 561 74 2 4155 4714 470945021 470945580 1.090000e-171 614.0
10 TraesCS4D01G317400 chr5A 87.419 461 36 17 672 1125 660250227 660250672 1.470000e-140 510.0
11 TraesCS4D01G317400 chr5A 85.030 501 53 10 1199 1689 660250673 660251161 1.910000e-134 490.0
12 TraesCS4D01G317400 chr5A 84.191 272 31 9 2986 3253 660252762 660253025 2.740000e-63 254.0
13 TraesCS4D01G317400 chr5A 76.222 450 60 14 4719 5123 7840968 7840521 1.680000e-45 195.0
14 TraesCS4D01G317400 chr5A 85.849 106 10 4 4727 4828 600951789 600951685 2.250000e-19 108.0
15 TraesCS4D01G317400 chr5A 96.970 33 1 0 1 33 660200329 660200361 8.280000e-04 56.5
16 TraesCS4D01G317400 chr4B 87.328 1744 147 32 4155 5832 612207789 612206054 0.000000e+00 1929.0
17 TraesCS4D01G317400 chr4B 95.406 1219 37 6 2167 3384 612209737 612208537 0.000000e+00 1923.0
18 TraesCS4D01G317400 chr4B 93.944 644 32 7 1474 2113 612210371 612209731 0.000000e+00 966.0
19 TraesCS4D01G317400 chr4B 83.446 1033 107 31 1465 2460 612178105 612177100 0.000000e+00 902.0
20 TraesCS4D01G317400 chr4B 90.358 643 38 18 672 1309 612178896 612178273 0.000000e+00 822.0
21 TraesCS4D01G317400 chr4B 92.120 368 18 8 1055 1413 612210739 612210374 5.290000e-140 508.0
22 TraesCS4D01G317400 chr4B 89.315 365 24 7 742 1101 612211087 612210733 1.510000e-120 444.0
23 TraesCS4D01G317400 chr4B 91.870 123 8 2 1346 1467 612178268 612178147 2.830000e-38 171.0
24 TraesCS4D01G317400 chr4B 95.062 81 4 0 2914 2994 106975931 106975851 1.730000e-25 128.0
25 TraesCS4D01G317400 chr4B 100.000 63 0 0 692 754 612212554 612212492 3.740000e-22 117.0
26 TraesCS4D01G317400 chr3B 87.682 755 78 10 3413 4154 598230702 598231454 0.000000e+00 865.0
27 TraesCS4D01G317400 chr3B 81.652 823 85 25 4718 5493 235970848 235971651 1.810000e-174 623.0
28 TraesCS4D01G317400 chr3B 84.778 519 68 8 3641 4150 598230703 598230187 1.470000e-140 510.0
29 TraesCS4D01G317400 chr3B 82.805 221 31 6 3487 3702 595264330 595264548 2.170000e-44 191.0
30 TraesCS4D01G317400 chr3B 79.503 161 29 4 1585 1742 47801884 47802043 1.740000e-20 111.0
31 TraesCS4D01G317400 chr3B 79.503 161 29 4 1585 1742 47855465 47855624 1.740000e-20 111.0
32 TraesCS4D01G317400 chr3B 79.503 161 29 4 1585 1742 48071327 48071486 1.740000e-20 111.0
33 TraesCS4D01G317400 chr3B 79.503 161 29 4 1585 1742 48133781 48133940 1.740000e-20 111.0
34 TraesCS4D01G317400 chr5D 83.990 787 106 10 5050 5818 533627386 533628170 0.000000e+00 737.0
35 TraesCS4D01G317400 chr5D 83.843 817 82 28 4716 5493 278439350 278440155 0.000000e+00 732.0
36 TraesCS4D01G317400 chr5D 83.435 821 82 28 4716 5493 278350814 278351623 0.000000e+00 713.0
37 TraesCS4D01G317400 chr5D 80.661 817 102 31 4717 5488 106809767 106808962 3.070000e-162 582.0
38 TraesCS4D01G317400 chr5D 82.453 644 70 19 4824 5441 41620907 41620281 1.890000e-144 523.0
39 TraesCS4D01G317400 chr5D 77.778 315 48 9 4715 5010 334989810 334989499 2.190000e-39 174.0
40 TraesCS4D01G317400 chr5D 96.104 77 3 0 2914 2990 325894313 325894389 6.220000e-25 126.0
41 TraesCS4D01G317400 chr5D 88.889 72 8 0 5830 5901 533628131 533628202 8.160000e-14 89.8
42 TraesCS4D01G317400 chr5D 88.060 67 7 1 3394 3459 235658032 235657966 1.770000e-10 78.7
43 TraesCS4D01G317400 chr3D 83.597 823 83 19 4717 5493 90831628 90830812 0.000000e+00 725.0
44 TraesCS4D01G317400 chr3D 80.625 160 29 2 3988 4147 27492302 27492459 8.050000e-24 122.0
45 TraesCS4D01G317400 chr3D 91.111 90 7 1 2914 3002 54370486 54370397 2.890000e-23 121.0
46 TraesCS4D01G317400 chr3D 89.247 93 8 2 2911 3003 595997080 595996990 1.350000e-21 115.0
47 TraesCS4D01G317400 chr3D 86.567 67 8 1 3393 3458 338580527 338580461 8.220000e-09 73.1
48 TraesCS4D01G317400 chr2D 83.253 830 82 22 4716 5493 620297987 620297163 0.000000e+00 710.0
49 TraesCS4D01G317400 chr2D 83.189 809 80 15 4736 5492 248488253 248489057 0.000000e+00 689.0
50 TraesCS4D01G317400 chr2D 81.250 528 78 12 3633 4150 544853435 544852919 1.980000e-109 407.0
51 TraesCS4D01G317400 chr2D 79.245 583 104 11 3580 4149 528070948 528070370 2.000000e-104 390.0
52 TraesCS4D01G317400 chr2B 83.010 824 87 25 4716 5493 487239441 487238625 0.000000e+00 697.0
53 TraesCS4D01G317400 chr2B 86.453 561 74 2 4155 4714 100089320 100088761 1.090000e-171 614.0
54 TraesCS4D01G317400 chr2B 87.565 193 22 1 4818 5010 112643112 112642922 7.710000e-54 222.0
55 TraesCS4D01G317400 chr6B 84.810 711 70 16 4811 5492 64691257 64690556 0.000000e+00 680.0
56 TraesCS4D01G317400 chr6B 96.104 77 3 0 2914 2990 8403561 8403637 6.220000e-25 126.0
57 TraesCS4D01G317400 chr7A 82.500 800 87 25 4719 5468 12215328 12214532 0.000000e+00 652.0
58 TraesCS4D01G317400 chr7A 86.453 561 74 2 4155 4714 28861058 28860499 1.090000e-171 614.0
59 TraesCS4D01G317400 chr7A 80.952 588 87 16 3580 4150 123201607 123201028 5.440000e-120 442.0
60 TraesCS4D01G317400 chr7A 81.346 520 81 8 3641 4149 82237217 82236703 5.520000e-110 409.0
61 TraesCS4D01G317400 chr6D 90.188 479 45 1 5007 5483 292846319 292846797 1.810000e-174 623.0
62 TraesCS4D01G317400 chr6D 86.583 559 73 2 4156 4713 450176266 450175709 3.030000e-172 616.0
63 TraesCS4D01G317400 chrUn 86.631 561 73 2 4155 4714 235339963 235340522 2.340000e-173 619.0
64 TraesCS4D01G317400 chrUn 86.631 561 73 2 4155 4714 239897217 239896658 2.340000e-173 619.0
65 TraesCS4D01G317400 chr3A 86.453 561 74 2 4155 4714 574289801 574290360 1.090000e-171 614.0
66 TraesCS4D01G317400 chr3A 86.453 561 74 2 4155 4714 662570235 662569676 1.090000e-171 614.0
67 TraesCS4D01G317400 chr3A 84.804 204 22 8 3487 3684 336816099 336816299 4.670000e-46 196.0
68 TraesCS4D01G317400 chr4A 82.293 593 60 20 4719 5268 722021737 722021147 6.940000e-129 472.0
69 TraesCS4D01G317400 chr4A 85.238 210 26 4 3487 3692 531116428 531116636 1.670000e-50 211.0
70 TraesCS4D01G317400 chr4A 81.008 258 31 14 982 1233 718049925 718049680 7.820000e-44 189.0
71 TraesCS4D01G317400 chr4A 83.824 204 24 7 3487 3684 571696037 571696237 1.010000e-42 185.0
72 TraesCS4D01G317400 chr4A 81.283 187 20 10 1055 1233 718153106 718152927 2.870000e-28 137.0
73 TraesCS4D01G317400 chr1B 84.275 407 53 4 3580 3976 420750712 420750307 2.580000e-103 387.0
74 TraesCS4D01G317400 chr1B 84.026 313 27 6 4717 5010 170573157 170572849 4.510000e-71 279.0
75 TraesCS4D01G317400 chr1D 80.300 533 77 17 3633 4152 247331870 247331353 1.560000e-100 377.0
76 TraesCS4D01G317400 chr7D 78.647 473 50 13 4715 5139 230925452 230925921 3.510000e-67 267.0
77 TraesCS4D01G317400 chr7D 82.895 228 33 5 3487 3709 59222992 59222766 3.610000e-47 200.0
78 TraesCS4D01G317400 chr7D 81.938 227 35 5 3487 3708 59283267 59283042 2.810000e-43 187.0
79 TraesCS4D01G317400 chr7D 91.304 92 6 2 2914 3003 22964268 22964359 2.240000e-24 124.0
80 TraesCS4D01G317400 chr7D 92.941 85 4 2 2914 2998 426558910 426558992 8.050000e-24 122.0
81 TraesCS4D01G317400 chr6A 83.408 223 26 10 3487 3702 353178713 353178495 4.670000e-46 196.0
82 TraesCS4D01G317400 chr6A 84.236 203 23 7 3488 3684 593276768 593276967 7.820000e-44 189.0
83 TraesCS4D01G317400 chr6A 96.296 81 3 0 2914 2994 27782774 27782694 3.720000e-27 134.0
84 TraesCS4D01G317400 chr1A 84.848 198 21 7 3487 3678 248045501 248045695 2.170000e-44 191.0
85 TraesCS4D01G317400 chr5B 92.308 65 5 0 5830 5894 673634549 673634613 6.310000e-15 93.5
86 TraesCS4D01G317400 chr5B 89.474 57 6 0 5830 5886 673668505 673668561 8.220000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G317400 chr4D 482355595 482361507 5912 True 10920.000000 10920 100.000000 1 5913 1 chr4D.!!$R5 5912
1 TraesCS4D01G317400 chr4D 482253751 482255645 1894 True 907.500000 1026 85.473500 672 2460 2 chr4D.!!$R6 1788
2 TraesCS4D01G317400 chr4D 165591577 165592377 800 True 769.000000 769 84.615000 4718 5493 1 chr4D.!!$R1 775
3 TraesCS4D01G317400 chr4D 391722686 391723265 579 True 425.000000 425 80.274000 3580 4150 1 chr4D.!!$R2 570
4 TraesCS4D01G317400 chr5A 660200329 660205028 4699 False 1955.750000 3855 94.306500 1 2917 2 chr5A.!!$F2 2916
5 TraesCS4D01G317400 chr5A 470945021 470945580 559 False 614.000000 614 86.453000 4155 4714 1 chr5A.!!$F1 559
6 TraesCS4D01G317400 chr5A 660250227 660253025 2798 False 483.500000 680 84.993250 672 3253 4 chr5A.!!$F3 2581
7 TraesCS4D01G317400 chr4B 612206054 612212554 6500 True 981.166667 1929 93.018833 692 5832 6 chr4B.!!$R3 5140
8 TraesCS4D01G317400 chr4B 612177100 612178896 1796 True 631.666667 902 88.558000 672 2460 3 chr4B.!!$R2 1788
9 TraesCS4D01G317400 chr3B 598230702 598231454 752 False 865.000000 865 87.682000 3413 4154 1 chr3B.!!$F7 741
10 TraesCS4D01G317400 chr3B 235970848 235971651 803 False 623.000000 623 81.652000 4718 5493 1 chr3B.!!$F5 775
11 TraesCS4D01G317400 chr3B 598230187 598230703 516 True 510.000000 510 84.778000 3641 4150 1 chr3B.!!$R1 509
12 TraesCS4D01G317400 chr5D 278439350 278440155 805 False 732.000000 732 83.843000 4716 5493 1 chr5D.!!$F2 777
13 TraesCS4D01G317400 chr5D 278350814 278351623 809 False 713.000000 713 83.435000 4716 5493 1 chr5D.!!$F1 777
14 TraesCS4D01G317400 chr5D 106808962 106809767 805 True 582.000000 582 80.661000 4717 5488 1 chr5D.!!$R2 771
15 TraesCS4D01G317400 chr5D 41620281 41620907 626 True 523.000000 523 82.453000 4824 5441 1 chr5D.!!$R1 617
16 TraesCS4D01G317400 chr5D 533627386 533628202 816 False 413.400000 737 86.439500 5050 5901 2 chr5D.!!$F4 851
17 TraesCS4D01G317400 chr3D 90830812 90831628 816 True 725.000000 725 83.597000 4717 5493 1 chr3D.!!$R2 776
18 TraesCS4D01G317400 chr2D 620297163 620297987 824 True 710.000000 710 83.253000 4716 5493 1 chr2D.!!$R3 777
19 TraesCS4D01G317400 chr2D 248488253 248489057 804 False 689.000000 689 83.189000 4736 5492 1 chr2D.!!$F1 756
20 TraesCS4D01G317400 chr2D 544852919 544853435 516 True 407.000000 407 81.250000 3633 4150 1 chr2D.!!$R2 517
21 TraesCS4D01G317400 chr2D 528070370 528070948 578 True 390.000000 390 79.245000 3580 4149 1 chr2D.!!$R1 569
22 TraesCS4D01G317400 chr2B 487238625 487239441 816 True 697.000000 697 83.010000 4716 5493 1 chr2B.!!$R3 777
23 TraesCS4D01G317400 chr2B 100088761 100089320 559 True 614.000000 614 86.453000 4155 4714 1 chr2B.!!$R1 559
24 TraesCS4D01G317400 chr6B 64690556 64691257 701 True 680.000000 680 84.810000 4811 5492 1 chr6B.!!$R1 681
25 TraesCS4D01G317400 chr7A 12214532 12215328 796 True 652.000000 652 82.500000 4719 5468 1 chr7A.!!$R1 749
26 TraesCS4D01G317400 chr7A 28860499 28861058 559 True 614.000000 614 86.453000 4155 4714 1 chr7A.!!$R2 559
27 TraesCS4D01G317400 chr7A 123201028 123201607 579 True 442.000000 442 80.952000 3580 4150 1 chr7A.!!$R4 570
28 TraesCS4D01G317400 chr7A 82236703 82237217 514 True 409.000000 409 81.346000 3641 4149 1 chr7A.!!$R3 508
29 TraesCS4D01G317400 chr6D 450175709 450176266 557 True 616.000000 616 86.583000 4156 4713 1 chr6D.!!$R1 557
30 TraesCS4D01G317400 chrUn 235339963 235340522 559 False 619.000000 619 86.631000 4155 4714 1 chrUn.!!$F1 559
31 TraesCS4D01G317400 chrUn 239896658 239897217 559 True 619.000000 619 86.631000 4155 4714 1 chrUn.!!$R1 559
32 TraesCS4D01G317400 chr3A 574289801 574290360 559 False 614.000000 614 86.453000 4155 4714 1 chr3A.!!$F2 559
33 TraesCS4D01G317400 chr3A 662569676 662570235 559 True 614.000000 614 86.453000 4155 4714 1 chr3A.!!$R1 559
34 TraesCS4D01G317400 chr4A 722021147 722021737 590 True 472.000000 472 82.293000 4719 5268 1 chr4A.!!$R3 549
35 TraesCS4D01G317400 chr1D 247331353 247331870 517 True 377.000000 377 80.300000 3633 4152 1 chr1D.!!$R1 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 109 0.108756 CCGTTCGGGAGGAAGAAGAC 60.109 60.000 3.04 0.0 38.47 3.01 F
665 2462 0.109458 CGTGGTGCGCTTCTGTAGTA 60.109 55.000 9.73 0.0 0.00 1.82 F
821 4035 0.179145 ATGAAACCGCTCCTACGTCG 60.179 55.000 0.00 0.0 0.00 5.12 F
959 4173 0.600255 AGCGCATACACCTAATCCGC 60.600 55.000 11.47 0.0 40.17 5.54 F
1052 4266 0.675208 GGGTCACACACACACACACA 60.675 55.000 0.00 0.0 0.00 3.72 F
1199 4512 0.681175 GGGCAGCAACAGGTGATTTT 59.319 50.000 0.00 0.0 32.66 1.82 F
1693 5584 1.003233 GGAAGAAGAAAGAAGGCCCGA 59.997 52.381 0.00 0.0 0.00 5.14 F
3108 7047 0.026285 CATTTCGACGATGCCGAACC 59.974 55.000 0.00 0.0 44.39 3.62 F
3437 7377 0.097674 GTACGCAAGCAATCCAGCAG 59.902 55.000 0.00 0.0 45.62 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1798 5690 0.658897 GTCGGAAGTTTTGAACGGCA 59.341 50.000 0.0 0.0 36.23 5.69 R
1949 5849 3.724508 AAAATTGCGACCATGTTGTGA 57.275 38.095 0.0 0.0 0.00 3.58 R
2067 5991 4.958581 GGATCACCCCAAGAATCAAAGAAT 59.041 41.667 0.0 0.0 0.00 2.40 R
2958 6897 4.472470 CCTCCATCCCATGATATAAGAGCA 59.528 45.833 0.0 0.0 0.00 4.26 R
2969 6908 2.109229 ACTACTCCCTCCATCCCATG 57.891 55.000 0.0 0.0 0.00 3.66 R
3076 7015 1.429148 CGAAATGGCTGCTCCGGTAC 61.429 60.000 0.0 0.0 37.80 3.34 R
3384 7324 0.318762 GGTCTGCTTCGAGGTGAACT 59.681 55.000 0.0 0.0 31.87 3.01 R
4388 8898 0.246635 CCTTGTGAGGTACGGTGAGG 59.753 60.000 0.0 0.0 38.32 3.86 R
5279 9857 0.107703 GATTCGGTCATGCCCACTGA 60.108 55.000 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.726853 GTGGACTTGATCACTTCCCG 58.273 55.000 16.10 0.00 0.00 5.14
33 34 2.611518 GACTTGATCACTTCCCGTCTG 58.388 52.381 0.00 0.00 0.00 3.51
34 35 1.971357 ACTTGATCACTTCCCGTCTGT 59.029 47.619 0.00 0.00 0.00 3.41
36 37 1.627864 TGATCACTTCCCGTCTGTGA 58.372 50.000 0.00 0.00 43.53 3.58
38 39 2.969628 ATCACTTCCCGTCTGTGATC 57.030 50.000 0.00 0.00 44.97 2.92
39 40 1.627864 TCACTTCCCGTCTGTGATCA 58.372 50.000 0.00 0.00 36.03 2.92
40 41 1.967779 TCACTTCCCGTCTGTGATCAA 59.032 47.619 0.00 0.00 36.03 2.57
42 43 1.691976 ACTTCCCGTCTGTGATCAACA 59.308 47.619 0.00 0.00 37.22 3.33
60 61 2.124983 GCGAGATGCTGGCTCCAA 60.125 61.111 0.00 0.00 41.73 3.53
61 62 1.525535 GCGAGATGCTGGCTCCAAT 60.526 57.895 0.00 0.00 41.73 3.16
62 63 1.783031 GCGAGATGCTGGCTCCAATG 61.783 60.000 0.00 0.00 41.73 2.82
63 64 0.179065 CGAGATGCTGGCTCCAATGA 60.179 55.000 0.00 0.00 0.00 2.57
64 65 1.542767 CGAGATGCTGGCTCCAATGAT 60.543 52.381 0.00 0.00 0.00 2.45
65 66 1.880675 GAGATGCTGGCTCCAATGATG 59.119 52.381 0.00 0.00 0.00 3.07
66 67 1.493446 AGATGCTGGCTCCAATGATGA 59.507 47.619 0.00 0.00 0.00 2.92
67 68 1.880675 GATGCTGGCTCCAATGATGAG 59.119 52.381 0.00 0.00 0.00 2.90
72 73 3.070076 GCTCCAATGATGAGCGTCA 57.930 52.632 0.00 0.00 45.05 4.35
73 74 1.590932 GCTCCAATGATGAGCGTCAT 58.409 50.000 0.00 0.00 45.05 3.06
74 75 1.263484 GCTCCAATGATGAGCGTCATG 59.737 52.381 5.99 0.00 45.05 3.07
85 86 4.208948 CGTCATGCGCGCGTCATT 62.209 61.111 32.35 15.44 0.00 2.57
86 87 2.645628 GTCATGCGCGCGTCATTG 60.646 61.111 32.35 23.93 0.00 2.82
87 88 3.863543 TCATGCGCGCGTCATTGG 61.864 61.111 32.35 21.07 0.00 3.16
95 96 4.160635 GCGTCATTGGCCCGTTCG 62.161 66.667 0.00 0.00 0.00 3.95
106 107 4.913126 CCGTTCGGGAGGAAGAAG 57.087 61.111 3.04 0.00 38.47 2.85
108 109 0.108756 CCGTTCGGGAGGAAGAAGAC 60.109 60.000 3.04 0.00 38.47 3.01
109 110 0.456312 CGTTCGGGAGGAAGAAGACG 60.456 60.000 0.00 0.00 34.69 4.18
111 112 1.135344 GTTCGGGAGGAAGAAGACGAG 60.135 57.143 0.00 0.00 34.69 4.18
157 1951 7.171337 TGTGCTTTCTTTATTTTTCAGGATTGC 59.829 33.333 0.00 0.00 0.00 3.56
251 2045 5.489792 ACAGTGGTGTAATCAACTGATCT 57.510 39.130 8.54 0.00 34.05 2.75
319 2113 0.754957 TGGCCCAGGACAACTTGTTG 60.755 55.000 11.44 11.44 0.00 3.33
328 2122 3.694566 AGGACAACTTGTTGGAACACTTC 59.305 43.478 16.48 4.48 39.29 3.01
331 2125 5.461032 ACAACTTGTTGGAACACTTCAAA 57.539 34.783 16.48 0.00 39.29 2.69
345 2139 8.379902 GGAACACTTCAAAATTATAAAATGCGG 58.620 33.333 0.00 0.00 0.00 5.69
360 2154 4.320608 AATGCGGAAAACATCTTGTTGT 57.679 36.364 0.00 0.00 40.14 3.32
400 2194 5.834460 TGACAGTGATTACTCCCCTACTTA 58.166 41.667 0.00 0.00 34.07 2.24
411 2205 6.777213 ACTCCCCTACTTATATTATCAGCG 57.223 41.667 0.00 0.00 0.00 5.18
496 2293 7.384115 CGGTCAGAAGATTGTGTACTAGAAAAA 59.616 37.037 0.00 0.00 0.00 1.94
499 2296 8.647796 TCAGAAGATTGTGTACTAGAAAAAGGA 58.352 33.333 0.00 0.00 0.00 3.36
500 2297 9.442047 CAGAAGATTGTGTACTAGAAAAAGGAT 57.558 33.333 0.00 0.00 0.00 3.24
536 2333 5.348724 ACTCACAGTTAATTACAGTGCGATG 59.651 40.000 7.64 0.00 42.25 3.84
540 2337 5.348724 ACAGTTAATTACAGTGCGATGAGTG 59.651 40.000 0.00 0.00 0.00 3.51
554 2351 7.712639 AGTGCGATGAGTGTAAATCTGAATAAT 59.287 33.333 0.00 0.00 0.00 1.28
614 2411 1.283905 CCGGGAAAAGGTATGGAAGGT 59.716 52.381 0.00 0.00 0.00 3.50
660 2457 3.414700 GGACGTGGTGCGCTTCTG 61.415 66.667 9.73 0.00 46.11 3.02
661 2458 2.661866 GACGTGGTGCGCTTCTGT 60.662 61.111 9.73 0.04 46.11 3.41
662 2459 1.372499 GACGTGGTGCGCTTCTGTA 60.372 57.895 9.73 0.00 46.11 2.74
663 2460 1.344942 GACGTGGTGCGCTTCTGTAG 61.345 60.000 9.73 0.00 46.11 2.74
665 2462 0.109458 CGTGGTGCGCTTCTGTAGTA 60.109 55.000 9.73 0.00 0.00 1.82
666 2463 1.469251 CGTGGTGCGCTTCTGTAGTAT 60.469 52.381 9.73 0.00 0.00 2.12
667 2464 2.618053 GTGGTGCGCTTCTGTAGTATT 58.382 47.619 9.73 0.00 0.00 1.89
668 2465 3.732774 CGTGGTGCGCTTCTGTAGTATTA 60.733 47.826 9.73 0.00 0.00 0.98
802 4016 7.175467 TCAACTTGACCGTACAGAATAGAAGTA 59.825 37.037 0.00 0.00 0.00 2.24
821 4035 0.179145 ATGAAACCGCTCCTACGTCG 60.179 55.000 0.00 0.00 0.00 5.12
901 4115 4.402851 GCACACTTCATGCCTGGA 57.597 55.556 0.00 0.00 37.08 3.86
959 4173 0.600255 AGCGCATACACCTAATCCGC 60.600 55.000 11.47 0.00 40.17 5.54
1050 4264 1.448717 CGGGTCACACACACACACA 60.449 57.895 0.00 0.00 0.00 3.72
1052 4266 0.675208 GGGTCACACACACACACACA 60.675 55.000 0.00 0.00 0.00 3.72
1198 4511 1.187567 GGGGCAGCAACAGGTGATTT 61.188 55.000 0.00 0.00 32.66 2.17
1199 4512 0.681175 GGGCAGCAACAGGTGATTTT 59.319 50.000 0.00 0.00 32.66 1.82
1200 4513 1.070601 GGGCAGCAACAGGTGATTTTT 59.929 47.619 0.00 0.00 32.66 1.94
1325 4639 3.853671 GTGAGCTTCGCCATGTTTAATTG 59.146 43.478 0.00 0.00 0.00 2.32
1443 4760 1.268032 GCTTATGATGAAACCGGTGCG 60.268 52.381 8.52 0.00 0.00 5.34
1446 4763 2.102070 ATGATGAAACCGGTGCGTTA 57.898 45.000 8.52 1.92 0.00 3.18
1456 4776 9.656040 ATGAAACCGGTGCGTTATATATTTATA 57.344 29.630 8.52 0.00 0.00 0.98
1608 5070 7.012704 CCACAATAGCTATATGCAAGTTGACTT 59.987 37.037 6.68 0.00 45.94 3.01
1691 5582 2.040412 TGAGGAAGAAGAAAGAAGGCCC 59.960 50.000 0.00 0.00 0.00 5.80
1693 5584 1.003233 GGAAGAAGAAAGAAGGCCCGA 59.997 52.381 0.00 0.00 0.00 5.14
1708 5599 3.117512 AGGCCCGATGTTGGATCTTAATT 60.118 43.478 0.00 0.00 0.00 1.40
1753 5644 8.967918 ACTTACCCAAGATAAATTCTAAAAGCC 58.032 33.333 0.00 0.00 35.60 4.35
1835 5731 5.295950 TCCGACACAAAGGAAAAACGTATA 58.704 37.500 0.00 0.00 32.86 1.47
1856 5752 9.516546 CGTATAGATTATAGGCATATGTAGGGA 57.483 37.037 4.29 0.00 0.00 4.20
1906 5806 8.811017 TGTTTATTTTCCTCCAAAATGCTATGA 58.189 29.630 3.12 0.00 43.38 2.15
1907 5807 9.651913 GTTTATTTTCCTCCAAAATGCTATGAA 57.348 29.630 3.12 0.00 43.38 2.57
1937 5837 7.265599 TCTTTACCTGATTTCATAGGAACCA 57.734 36.000 0.00 0.00 37.52 3.67
1949 5849 4.103627 TCATAGGAACCATGATGAGCACAT 59.896 41.667 0.00 0.00 39.67 3.21
2117 6041 2.537633 TGGAGGTCGTATGTTACCCT 57.462 50.000 0.00 0.00 36.34 4.34
2165 6091 9.942850 ATTTGAAAATAAAATACCTTGGTGGAG 57.057 29.630 2.03 0.00 39.71 3.86
2236 6163 4.853468 TGGCCCATGAATTAACACTCTA 57.147 40.909 0.00 0.00 0.00 2.43
2237 6164 5.186256 TGGCCCATGAATTAACACTCTAA 57.814 39.130 0.00 0.00 0.00 2.10
2238 6165 4.947388 TGGCCCATGAATTAACACTCTAAC 59.053 41.667 0.00 0.00 0.00 2.34
2453 6386 7.702348 GCACAAATTATGACCTATGAAGTTTCC 59.298 37.037 0.00 0.00 0.00 3.13
2969 6908 9.922305 GTGTAGTGTCAAAAATGCTCTTATATC 57.078 33.333 0.00 0.00 0.00 1.63
2983 6922 5.283763 CTCTTATATCATGGGATGGAGGGA 58.716 45.833 0.00 0.00 34.89 4.20
2997 6936 5.839606 GGATGGAGGGAGTAGTAGTTATTGT 59.160 44.000 0.00 0.00 0.00 2.71
3108 7047 0.026285 CATTTCGACGATGCCGAACC 59.974 55.000 0.00 0.00 44.39 3.62
3183 7122 8.812972 AGAAACCCTTATCAAAAAGGTTATTCC 58.187 33.333 2.21 0.00 43.94 3.01
3366 7306 9.820725 TGATCATGGATTTACAAAATGGATTTC 57.179 29.630 0.00 0.00 0.00 2.17
3394 7334 7.668525 AAGGATTAAAACTAAGTTCACCTCG 57.331 36.000 0.00 0.00 0.00 4.63
3395 7335 7.001099 AGGATTAAAACTAAGTTCACCTCGA 57.999 36.000 0.00 0.00 0.00 4.04
3396 7336 7.447594 AGGATTAAAACTAAGTTCACCTCGAA 58.552 34.615 0.00 0.00 0.00 3.71
3397 7337 7.603024 AGGATTAAAACTAAGTTCACCTCGAAG 59.397 37.037 0.00 0.00 33.09 3.79
3398 7338 6.535274 TTAAAACTAAGTTCACCTCGAAGC 57.465 37.500 0.00 0.00 33.09 3.86
3399 7339 3.746045 AACTAAGTTCACCTCGAAGCA 57.254 42.857 0.00 0.00 33.09 3.91
3400 7340 3.305398 ACTAAGTTCACCTCGAAGCAG 57.695 47.619 0.00 0.00 33.09 4.24
3401 7341 2.891580 ACTAAGTTCACCTCGAAGCAGA 59.108 45.455 0.00 0.00 33.09 4.26
3402 7342 2.156343 AAGTTCACCTCGAAGCAGAC 57.844 50.000 0.00 0.00 33.09 3.51
3403 7343 0.318762 AGTTCACCTCGAAGCAGACC 59.681 55.000 0.00 0.00 33.09 3.85
3404 7344 0.670854 GTTCACCTCGAAGCAGACCC 60.671 60.000 0.00 0.00 33.09 4.46
3405 7345 2.125912 CACCTCGAAGCAGACCCG 60.126 66.667 0.00 0.00 0.00 5.28
3406 7346 2.282958 ACCTCGAAGCAGACCCGA 60.283 61.111 0.00 0.00 0.00 5.14
3407 7347 2.182030 CCTCGAAGCAGACCCGAC 59.818 66.667 0.00 0.00 0.00 4.79
3408 7348 2.182030 CTCGAAGCAGACCCGACC 59.818 66.667 0.00 0.00 0.00 4.79
3409 7349 3.685214 CTCGAAGCAGACCCGACCG 62.685 68.421 0.00 0.00 0.00 4.79
3410 7350 3.744719 CGAAGCAGACCCGACCGA 61.745 66.667 0.00 0.00 0.00 4.69
3411 7351 2.654877 GAAGCAGACCCGACCGAA 59.345 61.111 0.00 0.00 0.00 4.30
3414 7354 3.119096 GCAGACCCGACCGAAAGC 61.119 66.667 0.00 0.00 0.00 3.51
3434 7374 0.447801 GTGGTACGCAAGCAATCCAG 59.552 55.000 0.00 0.00 45.62 3.86
3437 7377 0.097674 GTACGCAAGCAATCCAGCAG 59.902 55.000 0.00 0.00 45.62 4.24
3441 7381 1.246056 GCAAGCAATCCAGCAGGTGA 61.246 55.000 0.00 0.00 36.85 4.02
3457 7398 4.612939 GCAGGTGATTTTGTAGACCGAAAC 60.613 45.833 0.00 0.00 33.39 2.78
3460 7401 4.517832 GGTGATTTTGTAGACCGAAACCTT 59.482 41.667 0.00 0.00 0.00 3.50
3465 7406 7.446013 TGATTTTGTAGACCGAAACCTTACATT 59.554 33.333 0.00 0.00 0.00 2.71
3469 7410 2.156098 GACCGAAACCTTACATTGCCA 58.844 47.619 0.00 0.00 0.00 4.92
3477 7418 1.408822 CCTTACATTGCCAGGAGGGAC 60.409 57.143 0.00 0.00 40.01 4.46
3481 7422 2.971598 ATTGCCAGGAGGGACACCG 61.972 63.158 0.00 0.00 46.15 4.94
3490 7431 2.108970 GGAGGGACACCGTCTAGATTT 58.891 52.381 0.00 0.00 43.47 2.17
3506 7447 7.855409 CGTCTAGATTTTGTGTTGTTCAATCAA 59.145 33.333 0.00 0.00 0.00 2.57
3509 7450 5.748152 AGATTTTGTGTTGTTCAATCAACCG 59.252 36.000 7.02 0.00 44.66 4.44
3534 7477 4.181309 CCTCTCCTATTTATGAGGCGTC 57.819 50.000 0.00 0.00 39.46 5.19
3542 7485 2.961526 TTATGAGGCGTCTGGACTTC 57.038 50.000 8.06 0.00 29.96 3.01
3545 7488 3.358076 GAGGCGTCTGGACTTCCCG 62.358 68.421 0.00 0.00 29.96 5.14
3559 7502 4.383173 GACTTCCCGTACAAGAAAAGGAA 58.617 43.478 0.00 0.00 32.65 3.36
3606 7550 5.494390 AAACCCTAACTTAACTCGGACAT 57.506 39.130 0.00 0.00 0.00 3.06
3659 7604 2.038557 GCCTCTGAGTGGTTTGGTTCTA 59.961 50.000 3.66 0.00 0.00 2.10
3719 7672 0.907704 TATTCCTCACCGGGTGCACT 60.908 55.000 22.42 7.42 32.98 4.40
3775 7729 3.692101 CGGTCTGTCTGAAGTGACTCTAT 59.308 47.826 0.00 0.00 37.79 1.98
3784 7738 7.448777 TGTCTGAAGTGACTCTATAACTTCTGT 59.551 37.037 13.98 0.00 46.44 3.41
3822 7776 2.416836 GCTCTACAGGTTGCATACGACA 60.417 50.000 0.00 0.00 31.02 4.35
3825 7779 2.760634 ACAGGTTGCATACGACATCA 57.239 45.000 0.00 0.00 31.02 3.07
3832 7786 7.148086 ACAGGTTGCATACGACATCAAATTAAT 60.148 33.333 0.00 0.00 31.02 1.40
3948 7902 0.959372 CCTGAGCACTCTTTGGCCTG 60.959 60.000 3.32 0.00 0.00 4.85
4014 7968 1.337447 GCCTAAAGTACACCGCAGACA 60.337 52.381 0.00 0.00 0.00 3.41
4026 7983 1.522580 GCAGACATCTCTTCGGCCC 60.523 63.158 0.00 0.00 0.00 5.80
4040 7997 1.017701 CGGCCCAAGTTAGACCGAAC 61.018 60.000 0.00 0.00 46.71 3.95
4092 8086 5.676331 GCGGGGTCATAGTTCTGAATTTTTC 60.676 44.000 0.00 0.00 0.00 2.29
4196 8706 2.279741 GCCTTGCACATGAACGAGATA 58.720 47.619 0.00 0.00 0.00 1.98
4201 8711 5.220548 CCTTGCACATGAACGAGATAAAGAG 60.221 44.000 0.00 0.00 0.00 2.85
4219 8729 2.379907 AGAGCCTTTCCCAAATCTCCAA 59.620 45.455 0.00 0.00 0.00 3.53
4226 8736 6.168389 CCTTTCCCAAATCTCCAAAATCAAG 58.832 40.000 0.00 0.00 0.00 3.02
4233 8743 6.701400 CCAAATCTCCAAAATCAAGTTTCGTT 59.299 34.615 0.00 0.00 0.00 3.85
4313 8823 1.337703 GTTGCCATCTTGTGCACTCAA 59.662 47.619 19.41 3.81 37.18 3.02
4354 8864 8.526978 GCTGATACTCCTCATTAGATTGACATA 58.473 37.037 0.00 0.00 0.00 2.29
4371 8881 2.230266 ACATACCCAAAAACATGTCGCC 59.770 45.455 0.00 0.00 0.00 5.54
4372 8882 1.249407 TACCCAAAAACATGTCGCCC 58.751 50.000 0.00 0.00 0.00 6.13
4388 8898 1.794222 CCCGACTCAAATTCCGCAC 59.206 57.895 0.00 0.00 0.00 5.34
4444 8954 1.895798 ACATCTCGCTCTTTCTGGTCA 59.104 47.619 0.00 0.00 0.00 4.02
4462 8972 3.449018 GGTCAGAGGATAAGCAGACTTCA 59.551 47.826 0.00 0.00 37.33 3.02
4466 8976 3.196685 AGAGGATAAGCAGACTTCACACC 59.803 47.826 0.00 0.00 37.33 4.16
4515 9026 3.844211 ACCTGGGCAGTAATCTACTTGAA 59.156 43.478 0.00 0.00 36.76 2.69
4605 9116 7.331791 ACAACTGATCCTATACAAAGAACCTC 58.668 38.462 0.00 0.00 0.00 3.85
4617 9128 5.397360 ACAAAGAACCTCCCTTCAATTCAT 58.603 37.500 0.00 0.00 0.00 2.57
4634 9145 7.022979 TCAATTCATAATGCACTTCGAACTTG 58.977 34.615 0.00 0.00 0.00 3.16
4639 9150 4.900635 AATGCACTTCGAACTTGTTCTT 57.099 36.364 11.11 0.00 0.00 2.52
4780 9293 2.521465 CCAGCCCCTGCAACAACA 60.521 61.111 0.00 0.00 41.13 3.33
4809 9324 4.279169 CCCTAATGGTTTATGGATGCACAG 59.721 45.833 0.00 0.00 0.00 3.66
4822 9363 4.467082 TGGATGCACAGAGCCAATAAAAAT 59.533 37.500 0.00 0.00 44.83 1.82
4844 9385 1.729586 AAGCCCCACTACAGAGTTCA 58.270 50.000 0.00 0.00 31.73 3.18
4851 9392 4.087182 CCCACTACAGAGTTCAAGTCCTA 58.913 47.826 0.00 0.00 31.73 2.94
4888 9436 1.134848 CACCACCAAAACAACACCTGG 60.135 52.381 0.00 0.00 34.95 4.45
4949 9497 2.100991 GCTCAAGCGCCAAATCGG 59.899 61.111 2.29 0.00 38.11 4.18
4987 9536 5.012239 TCTTGGATTTTCACCCTGAAGATG 58.988 41.667 0.00 0.00 37.70 2.90
5039 9614 1.256812 AAGGCCACCTTGGATTTTCG 58.743 50.000 5.01 0.00 42.96 3.46
5042 9617 1.531739 GCCACCTTGGATTTTCGCCA 61.532 55.000 0.00 0.00 40.96 5.69
5063 9638 5.551233 CCATGAGAGGTAAGACTTTGAACA 58.449 41.667 0.00 0.00 0.00 3.18
5069 9644 4.652822 AGGTAAGACTTTGAACATCACCC 58.347 43.478 0.00 0.00 0.00 4.61
5127 9702 1.681264 CCCGAAACTCCAAGCAAGTTT 59.319 47.619 1.14 1.14 46.74 2.66
5140 9715 1.135859 GCAAGTTTCTCATCGCCACAG 60.136 52.381 0.00 0.00 0.00 3.66
5193 9768 3.773667 TCTCAGCTTCCATGACATTCTCT 59.226 43.478 0.00 0.00 0.00 3.10
5198 9773 3.618351 CTTCCATGACATTCTCTGCCTT 58.382 45.455 0.00 0.00 0.00 4.35
5268 9844 3.083997 ATCACACCGCTCCCTCCC 61.084 66.667 0.00 0.00 0.00 4.30
5279 9857 1.891011 GCTCCCTCCCAAACGGAAAAT 60.891 52.381 0.00 0.00 41.40 1.82
5404 9982 0.904865 AAGGAGGACATGCGTCAGGA 60.905 55.000 0.00 0.00 44.54 3.86
5419 9997 2.926838 GTCAGGAAGATCTTCGTCTTGC 59.073 50.000 24.18 12.20 44.13 4.01
5431 10009 1.347707 TCGTCTTGCCACTTGAGGAAT 59.652 47.619 0.00 0.00 0.00 3.01
5452 10030 0.319641 CTAGGACCGCCGCCTTTATC 60.320 60.000 0.00 0.00 39.96 1.75
5544 10123 4.889112 CATGGGCAGCAGCGGGAT 62.889 66.667 0.00 0.00 43.41 3.85
5584 10163 4.070265 ACCCTCCACCGGATCCGA 62.070 66.667 35.42 14.54 42.83 4.55
5599 10178 4.063967 CGACCCTACCACGCAGCA 62.064 66.667 0.00 0.00 0.00 4.41
5663 10242 5.964477 TCAGATCTGGGTTTAGTCCAATACT 59.036 40.000 22.42 0.00 42.62 2.12
5668 10247 5.424252 TCTGGGTTTAGTCCAATACTACCAG 59.576 44.000 11.38 11.38 45.43 4.00
5674 10253 2.910319 AGTCCAATACTACCAGCCACAA 59.090 45.455 0.00 0.00 36.36 3.33
5715 10309 3.249189 GTCTCAGCCACCACCCCA 61.249 66.667 0.00 0.00 0.00 4.96
5717 10311 1.852157 TCTCAGCCACCACCCCAAT 60.852 57.895 0.00 0.00 0.00 3.16
5797 10393 4.452733 CGGTGGGCTCCGTCTTCC 62.453 72.222 12.02 0.00 44.77 3.46
5798 10394 4.452733 GGTGGGCTCCGTCTTCCG 62.453 72.222 0.00 0.00 0.00 4.30
5804 10400 4.452733 CTCCGTCTTCCGCCACCC 62.453 72.222 0.00 0.00 34.38 4.61
5807 10403 4.323477 CGTCTTCCGCCACCCCAA 62.323 66.667 0.00 0.00 0.00 4.12
5808 10404 2.359975 GTCTTCCGCCACCCCAAG 60.360 66.667 0.00 0.00 0.00 3.61
5809 10405 2.852075 TCTTCCGCCACCCCAAGT 60.852 61.111 0.00 0.00 0.00 3.16
5810 10406 2.359975 CTTCCGCCACCCCAAGTC 60.360 66.667 0.00 0.00 0.00 3.01
5811 10407 3.172106 TTCCGCCACCCCAAGTCA 61.172 61.111 0.00 0.00 0.00 3.41
5812 10408 3.485346 TTCCGCCACCCCAAGTCAC 62.485 63.158 0.00 0.00 0.00 3.67
5814 10410 3.953775 CGCCACCCCAAGTCACCT 61.954 66.667 0.00 0.00 0.00 4.00
5815 10411 2.520968 GCCACCCCAAGTCACCTT 59.479 61.111 0.00 0.00 0.00 3.50
5816 10412 1.603739 GCCACCCCAAGTCACCTTC 60.604 63.158 0.00 0.00 0.00 3.46
5817 10413 1.302511 CCACCCCAAGTCACCTTCG 60.303 63.158 0.00 0.00 0.00 3.79
5818 10414 1.752198 CACCCCAAGTCACCTTCGA 59.248 57.895 0.00 0.00 0.00 3.71
5819 10415 0.602905 CACCCCAAGTCACCTTCGAC 60.603 60.000 0.00 0.00 36.08 4.20
5820 10416 1.374252 CCCCAAGTCACCTTCGACG 60.374 63.158 0.00 0.00 40.98 5.12
5821 10417 1.374252 CCCAAGTCACCTTCGACGG 60.374 63.158 6.37 6.37 40.98 4.79
5822 10418 1.366366 CCAAGTCACCTTCGACGGT 59.634 57.895 7.96 7.96 40.98 4.83
5828 10424 2.995574 ACCTTCGACGGTGAGGGG 60.996 66.667 13.58 5.77 39.32 4.79
5829 10425 2.678934 CCTTCGACGGTGAGGGGA 60.679 66.667 0.00 0.00 31.76 4.81
5830 10426 2.711922 CCTTCGACGGTGAGGGGAG 61.712 68.421 0.00 0.00 31.76 4.30
5831 10427 3.358076 CTTCGACGGTGAGGGGAGC 62.358 68.421 0.00 0.00 0.00 4.70
5869 10465 1.752198 CACCCCAAGTCACCTTCGA 59.248 57.895 0.00 0.00 0.00 3.71
5870 10466 0.602905 CACCCCAAGTCACCTTCGAC 60.603 60.000 0.00 0.00 36.08 4.20
5911 10507 4.426112 CGACGAGAGCTGGCAGCA 62.426 66.667 38.09 0.00 45.56 4.41
5912 10508 2.508887 GACGAGAGCTGGCAGCAG 60.509 66.667 38.09 26.94 45.56 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 1.525535 ATTGGAGCCAGCATCTCGC 60.526 57.895 0.00 0.00 42.91 5.03
44 45 0.179065 TCATTGGAGCCAGCATCTCG 60.179 55.000 0.00 0.00 0.00 4.04
48 49 1.982660 CTCATCATTGGAGCCAGCAT 58.017 50.000 0.00 0.00 0.00 3.79
49 50 3.489391 CTCATCATTGGAGCCAGCA 57.511 52.632 0.00 0.00 0.00 4.41
55 56 1.263484 GCATGACGCTCATCATTGGAG 59.737 52.381 0.00 0.00 37.20 3.86
56 57 1.302366 GCATGACGCTCATCATTGGA 58.698 50.000 0.00 0.00 37.20 3.53
69 70 2.645628 CAATGACGCGCGCATGAC 60.646 61.111 32.58 16.32 0.00 3.06
70 71 3.863543 CCAATGACGCGCGCATGA 61.864 61.111 32.58 11.56 0.00 3.07
78 79 4.160635 CGAACGGGCCAATGACGC 62.161 66.667 4.39 0.00 0.00 5.19
89 90 0.108756 GTCTTCTTCCTCCCGAACGG 60.109 60.000 6.25 6.25 0.00 4.44
90 91 0.456312 CGTCTTCTTCCTCCCGAACG 60.456 60.000 0.00 0.00 0.00 3.95
91 92 0.886563 TCGTCTTCTTCCTCCCGAAC 59.113 55.000 0.00 0.00 0.00 3.95
92 93 1.174783 CTCGTCTTCTTCCTCCCGAA 58.825 55.000 0.00 0.00 0.00 4.30
93 94 1.313812 GCTCGTCTTCTTCCTCCCGA 61.314 60.000 0.00 0.00 0.00 5.14
95 96 1.139947 CGCTCGTCTTCTTCCTCCC 59.860 63.158 0.00 0.00 0.00 4.30
97 98 1.517475 GCCGCTCGTCTTCTTCCTC 60.517 63.158 0.00 0.00 0.00 3.71
98 99 1.939769 GAGCCGCTCGTCTTCTTCCT 61.940 60.000 4.23 0.00 0.00 3.36
101 102 1.133407 CTTAGAGCCGCTCGTCTTCTT 59.867 52.381 14.71 0.00 35.36 2.52
102 103 0.736053 CTTAGAGCCGCTCGTCTTCT 59.264 55.000 14.71 0.00 35.36 2.85
103 104 0.248702 CCTTAGAGCCGCTCGTCTTC 60.249 60.000 14.71 0.00 35.36 2.87
106 107 2.119655 TCCCTTAGAGCCGCTCGTC 61.120 63.158 14.71 0.00 35.36 4.20
108 109 1.668101 AAGTCCCTTAGAGCCGCTCG 61.668 60.000 14.71 0.85 35.36 5.03
109 110 0.103390 GAAGTCCCTTAGAGCCGCTC 59.897 60.000 12.80 12.80 0.00 5.03
111 112 1.227002 CGAAGTCCCTTAGAGCCGC 60.227 63.158 0.00 0.00 0.00 6.53
208 2002 8.403236 CACTGTTTAAACCTAGCAACTAAAAGT 58.597 33.333 15.59 4.84 0.00 2.66
209 2003 7.860872 CCACTGTTTAAACCTAGCAACTAAAAG 59.139 37.037 15.59 4.24 0.00 2.27
215 2009 4.337274 ACACCACTGTTTAAACCTAGCAAC 59.663 41.667 15.59 0.00 0.00 4.17
274 2068 2.421388 CCGGCCTCATTATGGAAGTTCA 60.421 50.000 0.00 0.00 0.00 3.18
282 2076 0.664761 CACTTGCCGGCCTCATTATG 59.335 55.000 26.77 8.80 0.00 1.90
309 2103 5.461032 TTTGAAGTGTTCCAACAAGTTGT 57.539 34.783 1.64 1.64 41.21 3.32
319 2113 8.379902 CCGCATTTTATAATTTTGAAGTGTTCC 58.620 33.333 0.00 0.00 0.00 3.62
331 2125 9.651913 ACAAGATGTTTTCCGCATTTTATAATT 57.348 25.926 0.00 0.00 0.00 1.40
339 2133 4.320608 ACAACAAGATGTTTTCCGCATT 57.679 36.364 0.00 0.00 38.77 3.56
360 2154 6.114187 ACTGTCATAGTGTCATCCAGAAAA 57.886 37.500 0.00 0.00 38.49 2.29
387 2181 7.636579 TCGCTGATAATATAAGTAGGGGAGTA 58.363 38.462 0.00 0.00 0.00 2.59
390 2184 6.323996 CCATCGCTGATAATATAAGTAGGGGA 59.676 42.308 0.00 0.00 0.00 4.81
408 2202 5.527582 GTGGATGACTTAAAATACCATCGCT 59.472 40.000 0.00 0.00 35.67 4.93
411 2205 6.292919 GCTCGTGGATGACTTAAAATACCATC 60.293 42.308 0.00 0.00 34.48 3.51
448 2242 4.507710 GTGCAATGAGGATAAGTGACAGA 58.492 43.478 0.00 0.00 0.00 3.41
449 2243 3.308053 CGTGCAATGAGGATAAGTGACAG 59.692 47.826 0.00 0.00 0.00 3.51
554 2351 6.535150 CCTTCAGACGCTAAATTCAATGTAGA 59.465 38.462 0.00 0.00 0.00 2.59
565 2362 1.275291 CTGTCCCCTTCAGACGCTAAA 59.725 52.381 0.00 0.00 37.04 1.85
569 2366 1.827399 TTCCTGTCCCCTTCAGACGC 61.827 60.000 0.00 0.00 37.04 5.19
570 2367 0.247736 CTTCCTGTCCCCTTCAGACG 59.752 60.000 0.00 0.00 37.04 4.18
614 2411 7.939782 TGCAGAATGATTCAACTTCAAAAGTA 58.060 30.769 8.03 0.00 38.87 2.24
622 2419 3.438087 CCGACTGCAGAATGATTCAACTT 59.562 43.478 23.35 0.00 39.69 2.66
627 2424 1.590238 CGTCCGACTGCAGAATGATTC 59.410 52.381 23.35 5.08 39.69 2.52
658 2455 8.136165 AGCTTCTAACGGACAATAATACTACAG 58.864 37.037 0.00 0.00 0.00 2.74
660 2457 8.753175 CAAGCTTCTAACGGACAATAATACTAC 58.247 37.037 0.00 0.00 0.00 2.73
661 2458 8.689061 TCAAGCTTCTAACGGACAATAATACTA 58.311 33.333 0.00 0.00 0.00 1.82
662 2459 7.553334 TCAAGCTTCTAACGGACAATAATACT 58.447 34.615 0.00 0.00 0.00 2.12
663 2460 7.705325 TCTCAAGCTTCTAACGGACAATAATAC 59.295 37.037 0.00 0.00 0.00 1.89
665 2462 6.640518 TCTCAAGCTTCTAACGGACAATAAT 58.359 36.000 0.00 0.00 0.00 1.28
666 2463 6.032956 TCTCAAGCTTCTAACGGACAATAA 57.967 37.500 0.00 0.00 0.00 1.40
667 2464 5.654603 TCTCAAGCTTCTAACGGACAATA 57.345 39.130 0.00 0.00 0.00 1.90
668 2465 4.537135 TCTCAAGCTTCTAACGGACAAT 57.463 40.909 0.00 0.00 0.00 2.71
802 4016 0.179145 CGACGTAGGAGCGGTTTCAT 60.179 55.000 0.00 0.00 35.98 2.57
821 4035 5.489249 CTCTTGGTCTTTAGTCTTTACCCC 58.511 45.833 0.00 0.00 0.00 4.95
931 4145 2.030274 AGGTGTATGCGCTTTTTGGTTC 60.030 45.455 9.73 0.00 0.00 3.62
1050 4264 4.096681 TCTCTCTCTCTCTCTCTCTGTGT 58.903 47.826 0.00 0.00 0.00 3.72
1052 4266 4.614475 TCTCTCTCTCTCTCTCTCTCTGT 58.386 47.826 0.00 0.00 0.00 3.41
1180 4489 0.681175 AAAATCACCTGTTGCTGCCC 59.319 50.000 0.00 0.00 0.00 5.36
1199 4512 6.887626 ATAAACGTAGCTTTCCTGGAAAAA 57.112 33.333 21.39 8.54 30.84 1.94
1200 4513 6.487331 TGAATAAACGTAGCTTTCCTGGAAAA 59.513 34.615 21.39 5.69 30.84 2.29
1206 4519 4.901868 TGGTGAATAAACGTAGCTTTCCT 58.098 39.130 0.00 0.00 0.00 3.36
1216 4529 2.936498 AGCCGATTCTGGTGAATAAACG 59.064 45.455 0.00 0.00 42.43 3.60
1325 4639 1.063912 CACACACACACACACATGTCC 59.936 52.381 0.00 0.00 36.72 4.02
1626 5088 1.974957 TCTCCTCCCACAAAATCGACA 59.025 47.619 0.00 0.00 0.00 4.35
1691 5582 8.076178 GGGTCATTAAATTAAGATCCAACATCG 58.924 37.037 8.58 0.00 31.51 3.84
1693 5584 8.837099 TGGGTCATTAAATTAAGATCCAACAT 57.163 30.769 11.89 0.00 38.28 2.71
1708 5599 4.360951 AGTCGGTTTTCTGGGTCATTAA 57.639 40.909 0.00 0.00 0.00 1.40
1751 5642 5.068636 ACATGACATCTCATTTCTATGGGC 58.931 41.667 0.00 0.00 34.65 5.36
1753 5644 9.551734 TTCTTACATGACATCTCATTTCTATGG 57.448 33.333 0.00 0.00 34.65 2.74
1798 5690 0.658897 GTCGGAAGTTTTGAACGGCA 59.341 50.000 0.00 0.00 36.23 5.69
1949 5849 3.724508 AAAATTGCGACCATGTTGTGA 57.275 38.095 0.00 0.00 0.00 3.58
2067 5991 4.958581 GGATCACCCCAAGAATCAAAGAAT 59.041 41.667 0.00 0.00 0.00 2.40
2236 6163 5.986741 CCTGCGGGTTAAAACAAAATAAGTT 59.013 36.000 2.29 0.00 0.00 2.66
2237 6164 5.302313 TCCTGCGGGTTAAAACAAAATAAGT 59.698 36.000 12.43 0.00 0.00 2.24
2238 6165 5.774630 TCCTGCGGGTTAAAACAAAATAAG 58.225 37.500 12.43 0.00 0.00 1.73
2492 6425 7.849322 ATAAAACAACTACACCCCAAAATCT 57.151 32.000 0.00 0.00 0.00 2.40
2493 6426 8.896320 AAATAAAACAACTACACCCCAAAATC 57.104 30.769 0.00 0.00 0.00 2.17
2577 6510 7.533923 AGGGTAGGAAATAACATAAGGGAAA 57.466 36.000 0.00 0.00 0.00 3.13
2883 6820 6.359804 TGATAGAGGGAGACATGGATTTTTG 58.640 40.000 0.00 0.00 0.00 2.44
2939 6878 6.525629 AGAGCATTTTTGACACTACACTAGT 58.474 36.000 0.00 0.00 40.28 2.57
2958 6897 4.472470 CCTCCATCCCATGATATAAGAGCA 59.528 45.833 0.00 0.00 0.00 4.26
2969 6908 2.109229 ACTACTCCCTCCATCCCATG 57.891 55.000 0.00 0.00 0.00 3.66
3076 7015 1.429148 CGAAATGGCTGCTCCGGTAC 61.429 60.000 0.00 0.00 37.80 3.34
3108 7047 1.839994 TCTTTGGCTAGGGATGACAGG 59.160 52.381 0.00 0.00 0.00 4.00
3275 7214 5.745227 TCTTCTATTGTTGAGATGGGGAAC 58.255 41.667 0.00 0.00 0.00 3.62
3335 7275 8.757789 CCATTTTGTAAATCCATGATCAAATCG 58.242 33.333 0.00 0.00 0.00 3.34
3378 7318 4.058817 CTGCTTCGAGGTGAACTTAGTTT 58.941 43.478 0.00 0.00 31.87 2.66
3384 7324 0.318762 GGTCTGCTTCGAGGTGAACT 59.681 55.000 0.00 0.00 31.87 3.01
3386 7326 1.671742 GGGTCTGCTTCGAGGTGAA 59.328 57.895 0.00 0.00 34.74 3.18
3389 7329 2.282958 TCGGGTCTGCTTCGAGGT 60.283 61.111 0.00 0.00 0.00 3.85
3390 7330 2.182030 GTCGGGTCTGCTTCGAGG 59.818 66.667 0.00 0.00 33.41 4.63
3391 7331 2.182030 GGTCGGGTCTGCTTCGAG 59.818 66.667 0.00 0.00 33.41 4.04
3392 7332 3.744719 CGGTCGGGTCTGCTTCGA 61.745 66.667 0.00 0.00 0.00 3.71
3393 7333 2.758770 TTTCGGTCGGGTCTGCTTCG 62.759 60.000 0.00 0.00 0.00 3.79
3394 7334 1.005394 TTTCGGTCGGGTCTGCTTC 60.005 57.895 0.00 0.00 0.00 3.86
3395 7335 1.004918 CTTTCGGTCGGGTCTGCTT 60.005 57.895 0.00 0.00 0.00 3.91
3396 7336 2.657237 CTTTCGGTCGGGTCTGCT 59.343 61.111 0.00 0.00 0.00 4.24
3397 7337 3.119096 GCTTTCGGTCGGGTCTGC 61.119 66.667 0.00 0.00 0.00 4.26
3398 7338 2.809601 CGCTTTCGGTCGGGTCTG 60.810 66.667 0.00 0.00 0.00 3.51
3399 7339 3.300765 ACGCTTTCGGTCGGGTCT 61.301 61.111 0.00 0.00 40.69 3.85
3400 7340 3.110178 CACGCTTTCGGTCGGGTC 61.110 66.667 0.00 0.00 40.69 4.46
3401 7341 4.675029 CCACGCTTTCGGTCGGGT 62.675 66.667 0.00 0.00 40.69 5.28
3402 7342 3.285523 TACCACGCTTTCGGTCGGG 62.286 63.158 0.00 0.00 40.69 5.14
3403 7343 2.090524 GTACCACGCTTTCGGTCGG 61.091 63.158 0.00 0.00 40.69 4.79
3404 7344 2.430942 CGTACCACGCTTTCGGTCG 61.431 63.158 0.00 0.00 40.69 4.79
3405 7345 3.455685 CGTACCACGCTTTCGGTC 58.544 61.111 0.00 0.00 40.69 4.79
3414 7354 1.295357 TGGATTGCTTGCGTACCACG 61.295 55.000 0.00 0.00 45.88 4.94
3434 7374 2.695359 TCGGTCTACAAAATCACCTGC 58.305 47.619 0.00 0.00 0.00 4.85
3437 7377 4.070009 AGGTTTCGGTCTACAAAATCACC 58.930 43.478 0.00 0.00 0.00 4.02
3441 7381 7.590279 CAATGTAAGGTTTCGGTCTACAAAAT 58.410 34.615 0.00 0.00 0.00 1.82
3457 7398 0.918983 TCCCTCCTGGCAATGTAAGG 59.081 55.000 0.00 0.00 0.00 2.69
3460 7401 0.618458 GTGTCCCTCCTGGCAATGTA 59.382 55.000 0.00 0.00 0.00 2.29
3465 7406 4.954118 ACGGTGTCCCTCCTGGCA 62.954 66.667 0.00 0.00 0.00 4.92
3469 7410 0.927767 ATCTAGACGGTGTCCCTCCT 59.072 55.000 0.00 0.00 32.18 3.69
3477 7418 5.007234 TGAACAACACAAAATCTAGACGGTG 59.993 40.000 0.00 4.06 0.00 4.94
3481 7422 8.958043 GTTGATTGAACAACACAAAATCTAGAC 58.042 33.333 0.00 0.00 46.19 2.59
3506 7447 4.543689 TCATAAATAGGAGAGGTGACGGT 58.456 43.478 0.00 0.00 0.00 4.83
3532 7475 1.891150 TCTTGTACGGGAAGTCCAGAC 59.109 52.381 4.38 0.00 37.91 3.51
3534 7477 3.396260 TTTCTTGTACGGGAAGTCCAG 57.604 47.619 0.00 0.00 37.91 3.86
3542 7485 9.135843 GAATTTTTATTCCTTTTCTTGTACGGG 57.864 33.333 0.00 0.00 0.00 5.28
3572 7515 8.822855 GTTAAGTTAGGGTTTTTGATGTTTTGG 58.177 33.333 0.00 0.00 0.00 3.28
3606 7550 3.056891 GTCCGGAAAATTGCCAAGATTCA 60.057 43.478 5.23 0.00 0.00 2.57
3659 7604 1.002087 GTCACGTTCCCTTGGTGAGAT 59.998 52.381 0.00 0.00 40.99 2.75
3670 7615 1.746787 ACAAAAGGTTGGTCACGTTCC 59.253 47.619 0.00 0.00 39.22 3.62
3775 7729 1.351017 CAAGGCCAGGGACAGAAGTTA 59.649 52.381 5.01 0.00 0.00 2.24
3784 7738 1.836604 GCCAAAACAAGGCCAGGGA 60.837 57.895 5.01 0.00 46.50 4.20
3853 7807 3.314553 TCTTCGTCTCATCAAAACGGTC 58.685 45.455 0.00 0.00 37.05 4.79
3880 7834 8.250332 GCCTCAAATGAAAAGGTTATCAACATA 58.750 33.333 0.00 0.00 32.49 2.29
3948 7902 2.070028 GAGCACTCTTCGGTTTTCTCC 58.930 52.381 0.00 0.00 0.00 3.71
3972 7926 0.962356 AAGAGTGGCAGAAATGGGCG 60.962 55.000 0.00 0.00 0.00 6.13
4014 7968 2.168728 GTCTAACTTGGGCCGAAGAGAT 59.831 50.000 31.57 19.08 0.00 2.75
4026 7983 5.941948 AAGGAATTGTTCGGTCTAACTTG 57.058 39.130 0.00 0.00 0.00 3.16
4040 7997 2.427095 CCCTTAGGCCGAAAAGGAATTG 59.573 50.000 26.92 12.58 44.27 2.32
4067 8061 1.271856 TTCAGAACTATGACCCCGCA 58.728 50.000 0.00 0.00 0.00 5.69
4068 8062 2.622064 ATTCAGAACTATGACCCCGC 57.378 50.000 0.00 0.00 0.00 6.13
4092 8086 5.766150 TGGAAAATGTATGCCCTAATTCG 57.234 39.130 0.00 0.00 0.00 3.34
4196 8706 3.181418 TGGAGATTTGGGAAAGGCTCTTT 60.181 43.478 0.00 0.46 0.00 2.52
4201 8711 4.020307 TGATTTTGGAGATTTGGGAAAGGC 60.020 41.667 0.00 0.00 0.00 4.35
4219 8729 4.733523 GCCACAGACAACGAAACTTGATTT 60.734 41.667 0.00 0.00 0.00 2.17
4226 8736 1.822581 GTTGCCACAGACAACGAAAC 58.177 50.000 0.00 0.00 38.18 2.78
4233 8743 0.473755 ATCCAGTGTTGCCACAGACA 59.526 50.000 0.00 0.00 44.39 3.41
4252 8762 6.377146 GGTTAGAAGGAATGCATTAGGTTTGA 59.623 38.462 12.97 0.00 0.00 2.69
4313 8823 5.978814 AGTATCAGCGTCTAAAGATGGTTT 58.021 37.500 1.20 0.00 39.51 3.27
4354 8864 1.801309 CGGGCGACATGTTTTTGGGT 61.801 55.000 0.00 0.00 0.00 4.51
4371 8881 0.673644 AGGTGCGGAATTTGAGTCGG 60.674 55.000 0.00 0.00 0.00 4.79
4372 8882 0.721718 GAGGTGCGGAATTTGAGTCG 59.278 55.000 0.00 0.00 0.00 4.18
4388 8898 0.246635 CCTTGTGAGGTACGGTGAGG 59.753 60.000 0.00 0.00 38.32 3.86
4444 8954 3.196685 GGTGTGAAGTCTGCTTATCCTCT 59.803 47.826 0.00 0.00 34.61 3.69
4462 8972 0.909610 ATGAGGTGGACGATGGGTGT 60.910 55.000 0.00 0.00 0.00 4.16
4605 9116 5.066375 TCGAAGTGCATTATGAATTGAAGGG 59.934 40.000 0.00 0.00 0.00 3.95
4617 9128 6.260050 AGAAAGAACAAGTTCGAAGTGCATTA 59.740 34.615 6.19 0.00 43.97 1.90
4639 9150 9.303116 CCTTCTAGCTAAGATGGTATAGAAGAA 57.697 37.037 17.18 2.38 44.49 2.52
4664 9175 2.737679 GCATGGGAGTTGACTACGTACC 60.738 54.545 0.00 0.00 0.00 3.34
4809 9324 5.584649 GTGGGGCTTTTATTTTTATTGGCTC 59.415 40.000 0.00 0.00 0.00 4.70
4822 9363 3.649023 TGAACTCTGTAGTGGGGCTTTTA 59.351 43.478 0.00 0.00 35.62 1.52
4844 9385 3.099905 TGTACTGATGCTGCTAGGACTT 58.900 45.455 13.01 0.00 0.00 3.01
4851 9392 1.611673 GGTGGTTGTACTGATGCTGCT 60.612 52.381 0.00 0.00 0.00 4.24
4888 9436 2.224314 CGCTTTTGGAGAACTTGGACTC 59.776 50.000 0.00 0.00 0.00 3.36
4949 9497 1.354040 CAAGATCTATGATCGGGCGC 58.646 55.000 0.00 0.00 0.00 6.53
5039 9614 4.207891 TCAAAGTCTTACCTCTCATGGC 57.792 45.455 0.00 0.00 0.00 4.40
5042 9617 6.876257 GTGATGTTCAAAGTCTTACCTCTCAT 59.124 38.462 0.00 0.00 0.00 2.90
5063 9638 1.901464 GGGCAACAACACGGGTGAT 60.901 57.895 5.71 0.00 39.74 3.06
5069 9644 0.820074 TAAGTGGGGGCAACAACACG 60.820 55.000 0.00 0.00 45.83 4.49
5077 9652 1.909228 CGGTATGTAAGTGGGGGCA 59.091 57.895 0.00 0.00 0.00 5.36
5127 9702 1.670949 GAGGCTCTGTGGCGATGAGA 61.671 60.000 7.40 0.00 46.88 3.27
5140 9715 3.567478 AGTAATGGTGATTGGAGGCTC 57.433 47.619 5.78 5.78 0.00 4.70
5193 9768 1.144708 TCCATGGTGAAGTCAAAGGCA 59.855 47.619 12.58 0.00 0.00 4.75
5198 9773 5.441500 TGTTTAGTTCCATGGTGAAGTCAA 58.558 37.500 12.58 0.00 0.00 3.18
5268 9844 1.339610 TGCCCACTGATTTTCCGTTTG 59.660 47.619 0.00 0.00 0.00 2.93
5279 9857 0.107703 GATTCGGTCATGCCCACTGA 60.108 55.000 0.00 0.00 0.00 3.41
5404 9982 3.070018 CAAGTGGCAAGACGAAGATCTT 58.930 45.455 7.95 7.95 39.60 2.40
5419 9997 2.436173 GGTCCTAGGATTCCTCAAGTGG 59.564 54.545 16.27 5.52 34.61 4.00
5431 10009 2.859525 TAAAGGCGGCGGTCCTAGGA 62.860 60.000 7.62 7.62 32.65 2.94
5510 10088 2.063015 ATGGTCGCTGGTTGGGTTCA 62.063 55.000 0.00 0.00 0.00 3.18
5584 10163 1.302511 CTTTGCTGCGTGGTAGGGT 60.303 57.895 0.00 0.00 0.00 4.34
5599 10178 1.553704 CCGCCTACCCAGTTCTACTTT 59.446 52.381 0.00 0.00 0.00 2.66
5635 10214 5.777449 TGGACTAAACCCAGATCTGATCTA 58.223 41.667 24.62 8.60 37.58 1.98
5663 10242 1.788518 ATGCAGGGTTGTGGCTGGTA 61.789 55.000 0.00 0.00 0.00 3.25
5668 10247 3.443045 CGGATGCAGGGTTGTGGC 61.443 66.667 0.00 0.00 0.00 5.01
5791 10387 2.359975 CTTGGGGTGGCGGAAGAC 60.360 66.667 0.00 0.00 42.12 3.01
5792 10388 2.852075 ACTTGGGGTGGCGGAAGA 60.852 61.111 0.00 0.00 0.00 2.87
5793 10389 2.359975 GACTTGGGGTGGCGGAAG 60.360 66.667 0.00 0.00 0.00 3.46
5794 10390 3.172106 TGACTTGGGGTGGCGGAA 61.172 61.111 0.00 0.00 0.00 4.30
5795 10391 3.948719 GTGACTTGGGGTGGCGGA 61.949 66.667 0.00 0.00 0.00 5.54
5797 10393 3.953775 AGGTGACTTGGGGTGGCG 61.954 66.667 0.00 0.00 37.44 5.69
5812 10408 2.678934 TCCCCTCACCGTCGAAGG 60.679 66.667 16.38 16.38 37.30 3.46
5813 10409 2.885861 CTCCCCTCACCGTCGAAG 59.114 66.667 0.00 0.00 0.00 3.79
5814 10410 3.379445 GCTCCCCTCACCGTCGAA 61.379 66.667 0.00 0.00 0.00 3.71
5821 10417 4.083862 GTCCACCGCTCCCCTCAC 62.084 72.222 0.00 0.00 0.00 3.51
5822 10418 4.316823 AGTCCACCGCTCCCCTCA 62.317 66.667 0.00 0.00 0.00 3.86
5823 10419 3.462678 GAGTCCACCGCTCCCCTC 61.463 72.222 0.00 0.00 0.00 4.30
5828 10424 0.179097 GAAGATGGAGTCCACCGCTC 60.179 60.000 15.86 8.30 35.80 5.03
5829 10425 1.617947 GGAAGATGGAGTCCACCGCT 61.618 60.000 15.86 9.61 35.80 5.52
5830 10426 1.153349 GGAAGATGGAGTCCACCGC 60.153 63.158 15.86 7.22 35.80 5.68
5831 10427 2.286826 TGGAAGATGGAGTCCACCG 58.713 57.895 15.86 0.00 39.04 4.94
5834 10430 0.984230 GTGGTGGAAGATGGAGTCCA 59.016 55.000 15.88 15.88 41.72 4.02
5894 10490 4.426112 TGCTGCCAGCTCTCGTCG 62.426 66.667 18.96 0.00 42.97 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.