Multiple sequence alignment - TraesCS4D01G317200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G317200 chr4D 100.000 2942 0 0 1 2942 482235330 482238271 0.000000e+00 5433.0
1 TraesCS4D01G317200 chr4D 98.438 256 4 0 2494 2749 482237739 482237994 4.470000e-123 451.0
2 TraesCS4D01G317200 chr4D 98.438 256 4 0 2410 2665 482237823 482238078 4.470000e-123 451.0
3 TraesCS4D01G317200 chr4D 97.093 172 5 0 2578 2749 482237739 482237910 1.030000e-74 291.0
4 TraesCS4D01G317200 chr4D 97.093 172 5 0 2410 2581 482237907 482238078 1.030000e-74 291.0
5 TraesCS4D01G317200 chr4D 95.833 96 3 1 2766 2860 506979834 506979739 1.410000e-33 154.0
6 TraesCS4D01G317200 chr4D 95.455 88 4 0 2662 2749 482237739 482237826 1.100000e-29 141.0
7 TraesCS4D01G317200 chr4D 95.455 88 4 0 2410 2497 482237991 482238078 1.100000e-29 141.0
8 TraesCS4D01G317200 chr4B 92.212 2979 131 44 1 2936 612027020 612029940 0.000000e+00 4122.0
9 TraesCS4D01G317200 chr4B 84.058 207 22 8 2376 2580 612029558 612029755 3.870000e-44 189.0
10 TraesCS4D01G317200 chr4B 87.261 157 13 6 2510 2664 612029604 612029755 3.900000e-39 172.0
11 TraesCS4D01G317200 chr4B 80.162 247 23 16 2510 2754 612029457 612029679 8.440000e-36 161.0
12 TraesCS4D01G317200 chr4B 94.949 99 4 1 2763 2860 664144180 664144278 1.410000e-33 154.0
13 TraesCS4D01G317200 chr4B 83.117 154 16 10 2594 2742 612029457 612029605 6.620000e-27 132.0
14 TraesCS4D01G317200 chr4B 90.909 77 6 1 2678 2754 612029457 612029532 5.190000e-18 102.0
15 TraesCS4D01G317200 chr4B 91.667 72 3 3 2427 2496 612029685 612029755 2.410000e-16 97.1
16 TraesCS4D01G317200 chr5A 93.450 2565 94 31 1 2506 660397680 660395131 0.000000e+00 3738.0
17 TraesCS4D01G317200 chr5A 83.408 223 17 6 2678 2899 660395206 660395003 3.870000e-44 189.0
18 TraesCS4D01G317200 chr5A 96.000 100 2 2 2765 2862 502580686 502580785 8.440000e-36 161.0
19 TraesCS4D01G317200 chr5A 88.889 81 4 3 2594 2674 660395206 660395131 8.680000e-16 95.3
20 TraesCS4D01G317200 chr5A 87.654 81 5 3 2510 2590 660395206 660395131 4.040000e-14 89.8
21 TraesCS4D01G317200 chr5D 96.000 100 2 2 2765 2862 397026997 397027096 8.440000e-36 161.0
22 TraesCS4D01G317200 chr2D 97.849 93 0 2 2767 2859 371161173 371161083 3.030000e-35 159.0
23 TraesCS4D01G317200 chr5B 96.842 95 1 2 2765 2857 477422845 477422939 1.090000e-34 158.0
24 TraesCS4D01G317200 chr1B 97.753 89 2 0 2765 2853 119050028 119050116 1.410000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G317200 chr4D 482235330 482238271 2941 False 1028.428571 5433 97.424571 1 2942 7 chr4D.!!$F1 2941
1 TraesCS4D01G317200 chr4B 612027020 612029940 2920 False 710.728571 4122 87.055143 1 2936 7 chr4B.!!$F2 2935
2 TraesCS4D01G317200 chr5A 660395003 660397680 2677 True 1028.025000 3738 88.350250 1 2899 4 chr5A.!!$R1 2898

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 248 1.075542 TTTTGCGCGACTATGTCAGG 58.924 50.000 12.1 0.0 32.09 3.86 F
947 964 3.511934 CCTCTCCTACATATACCAGCACC 59.488 52.174 0.0 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1134 1158 1.141858 GGGGATGGACATGAGAAGACC 59.858 57.143 0.0 0.0 0.00 3.85 R
2432 2511 0.397941 CCAACAGCCTTGTCTCTGGA 59.602 55.000 0.0 0.0 35.59 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.758829 TCTGACTATGGATTTAGAAAGCTGTTA 58.241 33.333 0.00 0.00 0.00 2.41
178 179 1.168714 GGGTGGTGTTGCTTGAGATC 58.831 55.000 0.00 0.00 0.00 2.75
247 248 1.075542 TTTTGCGCGACTATGTCAGG 58.924 50.000 12.10 0.00 32.09 3.86
438 439 7.044798 AGGACTAATTCTTGATGTTCTGCTAC 58.955 38.462 0.00 0.00 0.00 3.58
589 598 9.013229 TGTGTTTAGATTTGTCTGCTCATTATT 57.987 29.630 0.00 0.00 0.00 1.40
635 645 6.945218 TGCTGAATAAATGGCTATTTTGGTT 58.055 32.000 13.63 6.76 37.64 3.67
794 804 4.903049 TGGTCAGACCTAAACACTCCTTTA 59.097 41.667 20.82 0.00 39.58 1.85
795 805 5.546499 TGGTCAGACCTAAACACTCCTTTAT 59.454 40.000 20.82 0.00 39.58 1.40
924 941 3.561725 GCAGCTCATCTAACCCACAATAC 59.438 47.826 0.00 0.00 0.00 1.89
947 964 3.511934 CCTCTCCTACATATACCAGCACC 59.488 52.174 0.00 0.00 0.00 5.01
961 978 5.806654 ACCAGCACCAAATACAAGATTTT 57.193 34.783 0.00 0.00 0.00 1.82
980 997 6.436532 AGATTTTCAGCAGTCCAGATTTCATT 59.563 34.615 0.00 0.00 0.00 2.57
1157 1181 0.620410 TTCTCATGTCCATCCCCGGT 60.620 55.000 0.00 0.00 0.00 5.28
1299 1323 0.821711 TGAACCCTTTTGTGGCCGAG 60.822 55.000 0.00 0.00 0.00 4.63
1308 1332 0.617935 TTGTGGCCGAGGATGATGAA 59.382 50.000 0.00 0.00 0.00 2.57
1350 1374 1.598685 GGAAGCGTTCGGGTTTCCA 60.599 57.895 10.92 0.00 44.11 3.53
1425 1452 2.047560 GGCGCCTGGTACTCGTTT 60.048 61.111 22.15 0.00 0.00 3.60
1434 1461 3.005472 CCTGGTACTCGTTTTCAGAGTCA 59.995 47.826 1.87 0.00 44.87 3.41
1468 1495 1.831652 CTCCAGCGGGAACACCTCTT 61.832 60.000 7.12 0.00 44.38 2.85
1530 1557 1.745489 GGAGGTGGCCAACGATGAC 60.745 63.158 16.93 5.80 0.00 3.06
1674 1704 3.670629 CTCCCCCTCGCTGTCCTCT 62.671 68.421 0.00 0.00 0.00 3.69
1747 1783 8.074613 AGTAGTACATCTGCACCAGTTAATAA 57.925 34.615 2.52 0.00 32.61 1.40
1802 1838 3.209410 CTCCTGTTAATGGGCAGTGATC 58.791 50.000 0.00 0.00 0.00 2.92
1839 1875 3.633525 TCATGTTGCTCTGCTGTTCTTTT 59.366 39.130 0.00 0.00 0.00 2.27
1987 2046 0.902516 AGGAAGAAGCTCTGCGAGGT 60.903 55.000 4.76 4.76 42.52 3.85
2047 2110 3.814615 CTGTCCTGCGTGCTGGTGT 62.815 63.158 16.06 0.00 36.57 4.16
2069 2135 4.465632 TGTACTGTTGTGTTGTGTCTCT 57.534 40.909 0.00 0.00 0.00 3.10
2292 2367 7.477144 TTGTTAAGGAGAATGTATATGCACG 57.523 36.000 0.00 0.00 0.00 5.34
2322 2398 3.009584 GGTGAGGAAAGGAAGATGAACCT 59.990 47.826 0.00 0.00 38.23 3.50
2343 2419 6.043411 ACCTAAGTTCTCGTTCATATTCAGC 58.957 40.000 0.00 0.00 0.00 4.26
2352 2428 8.716646 TCTCGTTCATATTCAGCAATCTTTTA 57.283 30.769 0.00 0.00 0.00 1.52
2382 2461 4.949856 CAGCCCAACACTAAATTGTAGGAT 59.050 41.667 0.00 0.00 0.00 3.24
2428 2507 9.971922 GGGAAATGATGATAAAAATACTGAAGG 57.028 33.333 0.00 0.00 0.00 3.46
2538 2617 2.553904 CCAGAGACAAGGCTGTTGGAAT 60.554 50.000 0.00 0.00 34.19 3.01
2541 2620 3.571401 AGAGACAAGGCTGTTGGAATTTG 59.429 43.478 0.00 0.00 35.30 2.32
2542 2621 2.629617 AGACAAGGCTGTTGGAATTTGG 59.370 45.455 0.00 0.00 35.30 3.28
2544 2623 3.037549 ACAAGGCTGTTGGAATTTGGAA 58.962 40.909 0.00 0.00 28.57 3.53
2545 2624 3.070015 ACAAGGCTGTTGGAATTTGGAAG 59.930 43.478 0.00 0.00 28.57 3.46
2547 2626 3.575805 AGGCTGTTGGAATTTGGAAGAA 58.424 40.909 0.00 0.00 0.00 2.52
2548 2627 3.966665 AGGCTGTTGGAATTTGGAAGAAA 59.033 39.130 0.00 0.00 0.00 2.52
2549 2628 4.594491 AGGCTGTTGGAATTTGGAAGAAAT 59.406 37.500 0.00 0.00 0.00 2.17
2550 2629 5.779771 AGGCTGTTGGAATTTGGAAGAAATA 59.220 36.000 0.00 0.00 0.00 1.40
2551 2630 6.441604 AGGCTGTTGGAATTTGGAAGAAATAT 59.558 34.615 0.00 0.00 0.00 1.28
2552 2631 7.619302 AGGCTGTTGGAATTTGGAAGAAATATA 59.381 33.333 0.00 0.00 0.00 0.86
2554 2633 9.651913 GCTGTTGGAATTTGGAAGAAATATAAA 57.348 29.630 0.00 0.00 0.00 1.40
2721 2800 8.257306 GGCTGTTGGAATTTGGAAGAAATATAA 58.743 33.333 0.00 0.00 0.00 0.98
2862 2942 2.508361 AGCTTTGTTGGCTGTTGCT 58.492 47.368 0.00 0.00 38.73 3.91
2872 2952 1.086634 GGCTGTTGCTCTAGCGAAGG 61.087 60.000 0.00 0.00 45.83 3.46
2873 2953 0.390472 GCTGTTGCTCTAGCGAAGGT 60.390 55.000 0.00 0.00 45.83 3.50
2936 3017 6.640907 CACTCTTAAATACCCAACAACAAAGC 59.359 38.462 0.00 0.00 0.00 3.51
2937 3018 6.549736 ACTCTTAAATACCCAACAACAAAGCT 59.450 34.615 0.00 0.00 0.00 3.74
2938 3019 7.722285 ACTCTTAAATACCCAACAACAAAGCTA 59.278 33.333 0.00 0.00 0.00 3.32
2939 3020 7.878036 TCTTAAATACCCAACAACAAAGCTAC 58.122 34.615 0.00 0.00 0.00 3.58
2940 3021 5.462530 AAATACCCAACAACAAAGCTACC 57.537 39.130 0.00 0.00 0.00 3.18
2941 3022 2.445682 ACCCAACAACAAAGCTACCA 57.554 45.000 0.00 0.00 0.00 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
247 248 4.120946 AGTACCATCCTCCAGTATCTCC 57.879 50.000 0.00 0.00 0.00 3.71
438 439 5.540337 TCCTATTCTGCTACTATGTTCCAGG 59.460 44.000 0.00 0.00 0.00 4.45
605 615 4.748277 AGCCATTTATTCAGCAAGCAAT 57.252 36.364 0.00 0.00 0.00 3.56
606 616 5.857471 ATAGCCATTTATTCAGCAAGCAA 57.143 34.783 0.00 0.00 0.00 3.91
609 619 7.043565 ACCAAAATAGCCATTTATTCAGCAAG 58.956 34.615 0.00 0.00 33.09 4.01
635 645 4.977739 AGATCCTGGGGAATCAGTAATTCA 59.022 41.667 0.00 0.00 44.81 2.57
794 804 1.376649 ACTCCTCTTTGGCTCCCAAT 58.623 50.000 0.00 0.00 43.55 3.16
795 805 1.149101 AACTCCTCTTTGGCTCCCAA 58.851 50.000 0.00 0.00 42.29 4.12
924 941 3.511934 GTGCTGGTATATGTAGGAGAGGG 59.488 52.174 0.00 0.00 0.00 4.30
947 964 6.680810 TGGACTGCTGAAAATCTTGTATTTG 58.319 36.000 0.00 0.00 0.00 2.32
961 978 3.614092 GGAATGAAATCTGGACTGCTGA 58.386 45.455 0.00 0.00 0.00 4.26
980 997 0.558220 TTGGAATGTGTGGGTTGGGA 59.442 50.000 0.00 0.00 0.00 4.37
1092 1113 4.069232 CAGTCCCTCTTCGGCGCA 62.069 66.667 10.83 0.00 0.00 6.09
1134 1158 1.141858 GGGGATGGACATGAGAAGACC 59.858 57.143 0.00 0.00 0.00 3.85
1157 1181 1.401552 GCACACTGACAACAAGCTTGA 59.598 47.619 32.50 9.05 0.00 3.02
1299 1323 3.119291 CAGCGTGTACTCTTCATCATCC 58.881 50.000 0.00 0.00 0.00 3.51
1308 1332 1.874345 CGAACCCCAGCGTGTACTCT 61.874 60.000 0.00 0.00 0.00 3.24
1350 1374 2.049063 GACGCCTTGCTGTCGTCT 60.049 61.111 6.74 0.00 46.21 4.18
1434 1461 2.175202 CTGGAGTTGCTGTAGTCCTCT 58.825 52.381 8.66 0.00 38.28 3.69
1530 1557 1.364626 GCTTGGTCAGCTCATGGTCG 61.365 60.000 0.00 0.00 46.27 4.79
1674 1704 3.933955 GTGTGTACGGCATTATTACCACA 59.066 43.478 0.00 0.00 0.00 4.17
1747 1783 4.022935 CACAGTGCAATGTGTCCAGTTAAT 60.023 41.667 33.07 0.00 44.49 1.40
1802 1838 3.131709 ACATGAGGGACAGACAAACAG 57.868 47.619 0.00 0.00 0.00 3.16
1839 1875 4.630644 AAACTTCTTGATGAGCTCCTGA 57.369 40.909 12.15 0.00 0.00 3.86
1987 2046 1.874739 GCAAGCAAGCAAGCAATCCAA 60.875 47.619 3.19 0.00 36.85 3.53
2047 2110 4.629634 CAGAGACACAACACAACAGTACAA 59.370 41.667 0.00 0.00 0.00 2.41
2069 2135 6.688073 AAGAGTACAAGATTCCTTCCTTCA 57.312 37.500 0.00 0.00 0.00 3.02
2136 2202 2.030893 GCAACAGCAAGCTGATACACAA 60.031 45.455 27.17 0.00 46.30 3.33
2253 2322 6.161381 TCCTTAACAAAACAGATCGACCTAC 58.839 40.000 0.00 0.00 0.00 3.18
2257 2326 6.780706 TTCTCCTTAACAAAACAGATCGAC 57.219 37.500 0.00 0.00 0.00 4.20
2292 2367 0.883833 CCTTTCCTCACCATGTGCAC 59.116 55.000 10.75 10.75 32.98 4.57
2322 2398 7.981789 AGATTGCTGAATATGAACGAGAACTTA 59.018 33.333 0.00 0.00 0.00 2.24
2343 2419 2.187707 GGCTGCGCACATAAAAGATTG 58.812 47.619 5.66 0.00 0.00 2.67
2352 2428 2.746412 TAGTGTTGGGCTGCGCACAT 62.746 55.000 19.55 7.96 43.39 3.21
2420 2499 5.422331 CCTTGTCTCTGGATTACCTTCAGTA 59.578 44.000 0.00 0.00 37.04 2.74
2422 2501 4.764172 CCTTGTCTCTGGATTACCTTCAG 58.236 47.826 0.00 0.00 37.04 3.02
2423 2502 3.055094 GCCTTGTCTCTGGATTACCTTCA 60.055 47.826 0.00 0.00 37.04 3.02
2426 2505 2.503356 CAGCCTTGTCTCTGGATTACCT 59.497 50.000 0.00 0.00 37.04 3.08
2427 2506 2.237392 ACAGCCTTGTCTCTGGATTACC 59.763 50.000 0.00 0.00 34.76 2.85
2428 2507 3.618690 ACAGCCTTGTCTCTGGATTAC 57.381 47.619 0.00 0.00 34.76 1.89
2429 2508 3.307691 CCAACAGCCTTGTCTCTGGATTA 60.308 47.826 0.00 0.00 35.59 1.75
2430 2509 2.553904 CCAACAGCCTTGTCTCTGGATT 60.554 50.000 0.00 0.00 35.59 3.01
2432 2511 0.397941 CCAACAGCCTTGTCTCTGGA 59.602 55.000 0.00 0.00 35.59 3.86
2433 2512 0.397941 TCCAACAGCCTTGTCTCTGG 59.602 55.000 0.00 0.00 36.23 3.86
2435 2514 3.515602 AATTCCAACAGCCTTGTCTCT 57.484 42.857 0.00 0.00 36.23 3.10
2436 2515 3.305608 CCAAATTCCAACAGCCTTGTCTC 60.306 47.826 0.00 0.00 36.23 3.36
2437 2516 2.629617 CCAAATTCCAACAGCCTTGTCT 59.370 45.455 0.00 0.00 36.23 3.41
2438 2517 2.627699 TCCAAATTCCAACAGCCTTGTC 59.372 45.455 0.00 0.00 36.23 3.18
2500 2579 7.918076 TGTCTCTGGATTACCTTCAGTATTTT 58.082 34.615 0.00 0.00 37.04 1.82
2501 2580 7.496346 TGTCTCTGGATTACCTTCAGTATTT 57.504 36.000 0.00 0.00 37.04 1.40
2502 2581 7.365117 CCTTGTCTCTGGATTACCTTCAGTATT 60.365 40.741 0.00 0.00 37.04 1.89
2503 2582 6.098982 CCTTGTCTCTGGATTACCTTCAGTAT 59.901 42.308 0.00 0.00 37.04 2.12
2504 2583 5.422331 CCTTGTCTCTGGATTACCTTCAGTA 59.578 44.000 0.00 0.00 37.04 2.74
2505 2584 4.223923 CCTTGTCTCTGGATTACCTTCAGT 59.776 45.833 0.00 0.00 37.04 3.41
2506 2585 4.764172 CCTTGTCTCTGGATTACCTTCAG 58.236 47.826 0.00 0.00 37.04 3.02
2507 2586 3.055094 GCCTTGTCTCTGGATTACCTTCA 60.055 47.826 0.00 0.00 37.04 3.02
2508 2587 3.198853 AGCCTTGTCTCTGGATTACCTTC 59.801 47.826 0.00 0.00 37.04 3.46
2509 2588 3.054802 CAGCCTTGTCTCTGGATTACCTT 60.055 47.826 0.00 0.00 37.04 3.50
2522 2601 2.627699 TCCAAATTCCAACAGCCTTGTC 59.372 45.455 0.00 0.00 36.23 3.18
2582 2661 9.444600 GTGTCTGGATTACCTTCAGTATTTTTA 57.555 33.333 0.00 0.00 37.04 1.52
2583 2662 7.942341 TGTGTCTGGATTACCTTCAGTATTTTT 59.058 33.333 0.00 0.00 37.04 1.94
2584 2663 7.458397 TGTGTCTGGATTACCTTCAGTATTTT 58.542 34.615 0.00 0.00 37.04 1.82
2585 2664 7.016153 TGTGTCTGGATTACCTTCAGTATTT 57.984 36.000 0.00 0.00 37.04 1.40
2586 2665 6.620877 TGTGTCTGGATTACCTTCAGTATT 57.379 37.500 0.00 0.00 37.04 1.89
2587 2666 6.352222 CCTTGTGTCTGGATTACCTTCAGTAT 60.352 42.308 0.00 0.00 37.04 2.12
2588 2667 5.046591 CCTTGTGTCTGGATTACCTTCAGTA 60.047 44.000 0.00 0.00 37.04 2.74
2589 2668 4.263068 CCTTGTGTCTGGATTACCTTCAGT 60.263 45.833 0.00 0.00 37.04 3.41
2590 2669 4.256920 CCTTGTGTCTGGATTACCTTCAG 58.743 47.826 0.00 0.00 37.04 3.02
2591 2670 3.559171 GCCTTGTGTCTGGATTACCTTCA 60.559 47.826 0.00 0.00 37.04 3.02
2592 2671 3.010420 GCCTTGTGTCTGGATTACCTTC 58.990 50.000 0.00 0.00 37.04 3.46
2593 2672 2.644798 AGCCTTGTGTCTGGATTACCTT 59.355 45.455 0.00 0.00 37.04 3.50
2594 2673 2.026822 CAGCCTTGTGTCTGGATTACCT 60.027 50.000 0.00 0.00 37.04 3.08
2595 2674 2.290323 ACAGCCTTGTGTCTGGATTACC 60.290 50.000 0.00 0.00 35.83 2.85
2596 2675 3.059352 ACAGCCTTGTGTCTGGATTAC 57.941 47.619 0.00 0.00 35.83 1.89
2597 2676 3.411446 CAACAGCCTTGTGTCTGGATTA 58.589 45.455 0.00 0.00 37.67 1.75
2598 2677 2.233271 CAACAGCCTTGTGTCTGGATT 58.767 47.619 0.00 0.00 37.67 3.01
2668 2747 7.458397 TGTGTCTGGATTACCTTCAGTATTTT 58.542 34.615 0.00 0.00 37.04 1.82
2669 2748 7.016153 TGTGTCTGGATTACCTTCAGTATTT 57.984 36.000 0.00 0.00 37.04 1.40
2670 2749 6.620877 TGTGTCTGGATTACCTTCAGTATT 57.379 37.500 0.00 0.00 37.04 1.89
2671 2750 6.352222 CCTTGTGTCTGGATTACCTTCAGTAT 60.352 42.308 0.00 0.00 37.04 2.12
2672 2751 5.046591 CCTTGTGTCTGGATTACCTTCAGTA 60.047 44.000 0.00 0.00 37.04 2.74
2673 2752 4.263068 CCTTGTGTCTGGATTACCTTCAGT 60.263 45.833 0.00 0.00 37.04 3.41
2674 2753 4.256920 CCTTGTGTCTGGATTACCTTCAG 58.743 47.826 0.00 0.00 37.04 3.02
2675 2754 3.559171 GCCTTGTGTCTGGATTACCTTCA 60.559 47.826 0.00 0.00 37.04 3.02
2676 2755 3.010420 GCCTTGTGTCTGGATTACCTTC 58.990 50.000 0.00 0.00 37.04 3.46
2677 2756 2.644798 AGCCTTGTGTCTGGATTACCTT 59.355 45.455 0.00 0.00 37.04 3.50
2857 2937 6.846325 ATATTAAACCTTCGCTAGAGCAAC 57.154 37.500 1.89 0.00 42.21 4.17
2886 2966 6.746364 GGAAATATACATCGTGGACGTAGATC 59.254 42.308 0.00 0.00 40.80 2.75
2887 2967 6.208007 TGGAAATATACATCGTGGACGTAGAT 59.792 38.462 0.00 0.00 40.80 1.98
2888 2968 5.532032 TGGAAATATACATCGTGGACGTAGA 59.468 40.000 0.00 0.00 40.80 2.59
2889 2969 5.628193 GTGGAAATATACATCGTGGACGTAG 59.372 44.000 0.00 0.00 40.80 3.51
2890 2970 5.300034 AGTGGAAATATACATCGTGGACGTA 59.700 40.000 0.00 0.00 40.80 3.57
2891 2971 4.098960 AGTGGAAATATACATCGTGGACGT 59.901 41.667 0.00 0.00 40.80 4.34
2892 2972 4.617959 AGTGGAAATATACATCGTGGACG 58.382 43.478 0.00 0.00 41.45 4.79
2893 2973 5.844004 AGAGTGGAAATATACATCGTGGAC 58.156 41.667 0.00 0.00 0.00 4.02
2894 2974 6.479972 AAGAGTGGAAATATACATCGTGGA 57.520 37.500 0.00 0.00 0.00 4.02
2895 2975 8.657074 TTTAAGAGTGGAAATATACATCGTGG 57.343 34.615 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.