Multiple sequence alignment - TraesCS4D01G316500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G316500 chr4D 100.000 5547 0 0 1 5547 481619689 481614143 0.000000e+00 10244.0
1 TraesCS4D01G316500 chr4B 93.972 2621 131 13 1535 4149 611021826 611019227 0.000000e+00 3940.0
2 TraesCS4D01G316500 chr4B 92.558 1075 59 10 4204 5273 610831660 610830602 0.000000e+00 1522.0
3 TraesCS4D01G316500 chr4B 94.969 974 35 8 4150 5119 611019177 611018214 0.000000e+00 1515.0
4 TraesCS4D01G316500 chr4B 83.069 1010 47 43 560 1498 611022791 611021835 0.000000e+00 804.0
5 TraesCS4D01G316500 chr4B 93.878 196 9 3 4925 5119 610761523 610761330 5.440000e-75 292.0
6 TraesCS4D01G316500 chr4B 93.814 194 8 3 4928 5119 610782974 610782783 7.030000e-74 289.0
7 TraesCS4D01G316500 chr4B 93.229 192 10 3 4928 5119 611006823 611006635 4.230000e-71 279.0
8 TraesCS4D01G316500 chr4B 92.347 196 12 3 4925 5119 610767855 610767662 5.470000e-70 276.0
9 TraesCS4D01G316500 chr4B 87.662 154 17 2 3207 3360 610571284 610571133 1.590000e-40 178.0
10 TraesCS4D01G316500 chr4B 86.538 156 20 1 5115 5270 610830249 610830095 2.660000e-38 171.0
11 TraesCS4D01G316500 chr4B 85.535 159 23 0 5115 5273 610782414 610782256 3.440000e-37 167.0
12 TraesCS4D01G316500 chr4B 84.906 159 24 0 5115 5273 610760959 610760801 1.600000e-35 161.0
13 TraesCS4D01G316500 chr4B 84.906 159 24 0 5115 5273 610767291 610767133 1.600000e-35 161.0
14 TraesCS4D01G316500 chr4B 84.906 159 24 0 5115 5273 611006264 611006106 1.600000e-35 161.0
15 TraesCS4D01G316500 chr4B 84.348 115 7 7 342 455 611024393 611024289 9.830000e-18 102.0
16 TraesCS4D01G316500 chr4B 91.667 48 4 0 4895 4942 611018326 611018279 3.590000e-07 67.6
17 TraesCS4D01G316500 chr5A 90.580 2877 172 51 815 3639 661017121 661019950 0.000000e+00 3720.0
18 TraesCS4D01G316500 chr5A 88.333 1200 81 31 4285 5446 661020617 661021795 0.000000e+00 1386.0
19 TraesCS4D01G316500 chr5A 89.525 611 54 8 3625 4232 661020006 661020609 0.000000e+00 765.0
20 TraesCS4D01G316500 chr5A 86.257 553 57 11 1 547 661015980 661016519 2.880000e-162 582.0
21 TraesCS4D01G316500 chr5A 87.838 74 4 4 80 152 553457806 553457875 1.280000e-11 82.4
22 TraesCS4D01G316500 chr1B 88.608 237 26 1 2723 2958 646539641 646539405 2.530000e-73 287.0
23 TraesCS4D01G316500 chr5D 85.882 85 10 2 92 175 389108229 389108146 7.650000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G316500 chr4D 481614143 481619689 5546 True 10244.00 10244 100.00000 1 5547 1 chr4D.!!$R1 5546
1 TraesCS4D01G316500 chr4B 611018214 611024393 6179 True 1285.72 3940 89.60500 342 5119 5 chr4B.!!$R7 4777
2 TraesCS4D01G316500 chr4B 610830095 610831660 1565 True 846.50 1522 89.54800 4204 5273 2 chr4B.!!$R5 1069
3 TraesCS4D01G316500 chr4B 610782256 610782974 718 True 228.00 289 89.67450 4928 5273 2 chr4B.!!$R4 345
4 TraesCS4D01G316500 chr4B 610760801 610761523 722 True 226.50 292 89.39200 4925 5273 2 chr4B.!!$R2 348
5 TraesCS4D01G316500 chr4B 611006106 611006823 717 True 220.00 279 89.06750 4928 5273 2 chr4B.!!$R6 345
6 TraesCS4D01G316500 chr4B 610767133 610767855 722 True 218.50 276 88.62650 4925 5273 2 chr4B.!!$R3 348
7 TraesCS4D01G316500 chr5A 661015980 661021795 5815 False 1613.25 3720 88.67375 1 5446 4 chr5A.!!$F2 5445

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.034337 TTTGCACCTACAGTCCGACC 59.966 55.000 0.00 0.00 0.00 4.79 F
169 170 0.036388 CACACGCCCAACCTCTACAT 60.036 55.000 0.00 0.00 0.00 2.29 F
641 2055 0.041135 CCGCTCGTAGCACTAGTAGC 60.041 60.000 0.00 1.88 42.58 3.58 F
1750 3543 0.101399 CACGACTGCTAGGGTGCTAG 59.899 60.000 0.00 0.00 0.00 3.42 F
1910 3703 0.983467 TCCAGCTGCATGAGGTACAA 59.017 50.000 8.66 0.00 0.00 2.41 F
2396 4192 1.716050 CTACGTTGATGATCCGCGATG 59.284 52.381 8.23 0.00 0.00 3.84 F
4043 5920 0.029567 CTGACTCTGTCGCCGATACC 59.970 60.000 0.00 0.00 34.95 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1978 3771 0.179156 GCCATCACCTGTGAAATGCG 60.179 55.000 3.79 0.00 43.58 4.73 R
2067 3860 1.615392 AGCACATGAAGTTTTGAGGGC 59.385 47.619 0.00 0.00 0.00 5.19 R
2376 4170 1.716050 CATCGCGGATCATCAACGTAG 59.284 52.381 6.13 0.00 0.00 3.51 R
3639 5446 2.840038 TGACTGGCAGAATGATACACCT 59.160 45.455 23.66 0.00 39.69 4.00 R
3796 5673 0.506932 CTTGTGGTGTACGTTGCGAG 59.493 55.000 0.00 0.00 0.00 5.03 R
4202 6131 1.467734 GCACTTGGCATGAGAACTCAG 59.532 52.381 7.45 4.37 43.61 3.35 R
5515 8261 0.099436 GCACTTCGGCCATGAATGTC 59.901 55.000 2.24 0.00 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.250727 GCTGGGACTTTGCACCTACA 60.251 55.000 0.00 0.00 0.00 2.74
25 26 1.429463 GACTTTGCACCTACAGTCCG 58.571 55.000 0.00 0.00 31.16 4.79
28 29 0.034337 TTTGCACCTACAGTCCGACC 59.966 55.000 0.00 0.00 0.00 4.79
56 57 1.004560 ACACGAGAGGCACCATGTG 60.005 57.895 0.00 0.00 36.51 3.21
76 77 9.912634 CCATGTGTTTTTAGTATGAACTTGATT 57.087 29.630 0.00 0.00 37.15 2.57
125 126 9.796120 TGGATTTTATTAACTTAAAATGGAGCG 57.204 29.630 10.21 0.00 40.25 5.03
145 146 5.967088 AGCGTCAAGAAGATACATAACACT 58.033 37.500 0.00 0.00 0.00 3.55
147 148 7.717568 AGCGTCAAGAAGATACATAACACTAT 58.282 34.615 0.00 0.00 0.00 2.12
149 150 9.119329 GCGTCAAGAAGATACATAACACTATAG 57.881 37.037 0.00 0.00 0.00 1.31
150 151 9.119329 CGTCAAGAAGATACATAACACTATAGC 57.881 37.037 0.00 0.00 0.00 2.97
151 152 9.967346 GTCAAGAAGATACATAACACTATAGCA 57.033 33.333 0.00 0.00 0.00 3.49
152 153 9.967346 TCAAGAAGATACATAACACTATAGCAC 57.033 33.333 0.00 0.00 0.00 4.40
153 154 9.750125 CAAGAAGATACATAACACTATAGCACA 57.250 33.333 0.00 0.00 0.00 4.57
154 155 9.751542 AAGAAGATACATAACACTATAGCACAC 57.248 33.333 0.00 0.00 0.00 3.82
155 156 8.076781 AGAAGATACATAACACTATAGCACACG 58.923 37.037 0.00 0.00 0.00 4.49
156 157 6.150318 AGATACATAACACTATAGCACACGC 58.850 40.000 0.00 0.00 38.99 5.34
157 158 3.454375 ACATAACACTATAGCACACGCC 58.546 45.455 0.00 0.00 39.83 5.68
159 160 0.611200 AACACTATAGCACACGCCCA 59.389 50.000 0.00 0.00 39.83 5.36
160 161 0.611200 ACACTATAGCACACGCCCAA 59.389 50.000 0.00 0.00 39.83 4.12
161 162 1.006832 CACTATAGCACACGCCCAAC 58.993 55.000 0.00 0.00 39.83 3.77
164 165 0.177141 TATAGCACACGCCCAACCTC 59.823 55.000 0.00 0.00 39.83 3.85
166 167 0.901114 TAGCACACGCCCAACCTCTA 60.901 55.000 0.00 0.00 39.83 2.43
167 168 2.033194 GCACACGCCCAACCTCTAC 61.033 63.158 0.00 0.00 0.00 2.59
168 169 1.369692 CACACGCCCAACCTCTACA 59.630 57.895 0.00 0.00 0.00 2.74
169 170 0.036388 CACACGCCCAACCTCTACAT 60.036 55.000 0.00 0.00 0.00 2.29
180 182 6.014499 GCCCAACCTCTACATAGCTATCTTTA 60.014 42.308 2.34 0.00 0.00 1.85
181 183 7.310734 GCCCAACCTCTACATAGCTATCTTTAT 60.311 40.741 2.34 0.00 0.00 1.40
202 204 9.704098 CTTTATAAAATCCGTCTAGAAACAAGC 57.296 33.333 0.00 0.00 0.00 4.01
211 213 4.274865 GTCTAGAAACAAGCGCAATATGC 58.725 43.478 11.47 0.00 40.69 3.14
230 233 2.052157 GCGCTATATTCTGACGTGGAC 58.948 52.381 0.00 0.00 0.00 4.02
295 299 2.821366 CGCGGCAGATTCAGGCTT 60.821 61.111 0.00 0.00 0.00 4.35
327 333 1.679944 CCGACCCGAGGTGACTAACTA 60.680 57.143 0.00 0.00 44.43 2.24
420 426 3.659089 TTCCTGGAAGCTACGCGCC 62.659 63.158 5.73 0.00 40.39 6.53
455 1734 1.140816 GTTTATCTCGCGCATCTCCC 58.859 55.000 8.75 0.00 0.00 4.30
463 1742 1.294780 GCGCATCTCCCTGGATAGG 59.705 63.158 0.30 0.00 44.18 2.57
467 1754 1.427809 CATCTCCCTGGATAGGCACA 58.572 55.000 0.00 0.00 43.16 4.57
468 1755 1.071385 CATCTCCCTGGATAGGCACAC 59.929 57.143 0.00 0.00 43.16 3.82
469 1756 1.043116 TCTCCCTGGATAGGCACACG 61.043 60.000 0.00 0.00 43.16 4.49
470 1757 2.032860 CTCCCTGGATAGGCACACGG 62.033 65.000 0.00 0.00 43.16 4.94
471 1758 2.063979 CCCTGGATAGGCACACGGA 61.064 63.158 0.00 0.00 43.16 4.69
472 1759 1.443407 CCTGGATAGGCACACGGAG 59.557 63.158 0.00 0.00 37.25 4.63
494 1781 0.243636 GGCCATTTCCACGACCAAAG 59.756 55.000 0.00 0.00 0.00 2.77
495 1782 0.958822 GCCATTTCCACGACCAAAGT 59.041 50.000 0.00 0.00 0.00 2.66
496 1783 1.335872 GCCATTTCCACGACCAAAGTG 60.336 52.381 0.00 0.00 39.19 3.16
528 1826 0.108615 ACAGACGCGGGAAATCTCAG 60.109 55.000 12.47 0.00 0.00 3.35
536 1834 2.289565 CGGGAAATCTCAGCTTTACCC 58.710 52.381 0.00 0.00 33.66 3.69
537 1835 2.289565 GGGAAATCTCAGCTTTACCCG 58.710 52.381 0.00 0.00 31.38 5.28
548 1846 1.296056 CTTTACCCGCACCCACGAAG 61.296 60.000 0.00 0.00 34.06 3.79
556 1854 0.392461 GCACCCACGAAGCAAGGATA 60.392 55.000 0.00 0.00 0.00 2.59
557 1855 1.656652 CACCCACGAAGCAAGGATAG 58.343 55.000 0.00 0.00 0.00 2.08
558 1856 1.207089 CACCCACGAAGCAAGGATAGA 59.793 52.381 0.00 0.00 0.00 1.98
559 1857 2.119495 ACCCACGAAGCAAGGATAGAT 58.881 47.619 0.00 0.00 0.00 1.98
560 1858 2.158900 ACCCACGAAGCAAGGATAGATG 60.159 50.000 0.00 0.00 0.00 2.90
561 1859 2.487934 CCACGAAGCAAGGATAGATGG 58.512 52.381 0.00 0.00 0.00 3.51
641 2055 0.041135 CCGCTCGTAGCACTAGTAGC 60.041 60.000 0.00 1.88 42.58 3.58
708 2122 2.683933 GGCCCACGGAGGAGAGAA 60.684 66.667 0.00 0.00 41.22 2.87
709 2123 2.726351 GGCCCACGGAGGAGAGAAG 61.726 68.421 0.00 0.00 41.22 2.85
710 2124 2.726351 GCCCACGGAGGAGAGAAGG 61.726 68.421 0.00 0.00 41.22 3.46
711 2125 2.060980 CCCACGGAGGAGAGAAGGG 61.061 68.421 0.00 0.00 41.22 3.95
712 2126 2.060980 CCACGGAGGAGAGAAGGGG 61.061 68.421 0.00 0.00 41.22 4.79
713 2127 2.060980 CACGGAGGAGAGAAGGGGG 61.061 68.421 0.00 0.00 0.00 5.40
714 2128 2.246874 ACGGAGGAGAGAAGGGGGA 61.247 63.158 0.00 0.00 0.00 4.81
715 2129 1.456705 CGGAGGAGAGAAGGGGGAG 60.457 68.421 0.00 0.00 0.00 4.30
716 2130 1.939082 CGGAGGAGAGAAGGGGGAGA 61.939 65.000 0.00 0.00 0.00 3.71
717 2131 0.397957 GGAGGAGAGAAGGGGGAGAC 60.398 65.000 0.00 0.00 0.00 3.36
808 2230 1.608046 CCCCCGCCTCTATCCTCTC 60.608 68.421 0.00 0.00 0.00 3.20
849 2565 3.303725 CGTGAATTCCAGAGCGAAACAAA 60.304 43.478 2.27 0.00 0.00 2.83
856 2572 0.307760 AGAGCGAAACAAAGCCAACG 59.692 50.000 0.00 0.00 0.00 4.10
857 2573 0.660300 GAGCGAAACAAAGCCAACGG 60.660 55.000 0.00 0.00 0.00 4.44
926 2646 1.145325 ACCTACCTCCTACCCTCATCG 59.855 57.143 0.00 0.00 0.00 3.84
1200 2936 3.371063 GAGCAGGTCCGTCGTCCA 61.371 66.667 6.50 0.00 0.00 4.02
1271 3040 9.730420 AACACCTTAATTAATGATTAACGATGC 57.270 29.630 7.40 0.00 35.74 3.91
1303 3072 2.893637 CTGATTCGTCGAATTGGGAGT 58.106 47.619 20.81 0.00 31.89 3.85
1318 3091 2.514582 TGGGAGTGAAACAAACCCCTAA 59.485 45.455 0.00 0.00 43.04 2.69
1329 3102 2.028420 AACCCCTAAATTACGACCGC 57.972 50.000 0.00 0.00 0.00 5.68
1332 3105 1.471327 CCCCTAAATTACGACCGCGAA 60.471 52.381 8.23 0.00 41.64 4.70
1335 3108 3.060070 CCCTAAATTACGACCGCGAAATC 60.060 47.826 8.23 0.52 41.64 2.17
1336 3109 2.706760 AAATTACGACCGCGAAATCG 57.293 45.000 20.71 20.71 43.97 3.34
1337 3110 1.912001 AATTACGACCGCGAAATCGA 58.088 45.000 26.50 11.30 40.86 3.59
1374 3152 2.108970 GAGGACCGACCACCTAATTCT 58.891 52.381 0.00 0.00 42.04 2.40
1375 3153 3.294214 GAGGACCGACCACCTAATTCTA 58.706 50.000 0.00 0.00 42.04 2.10
1397 3175 7.218614 TCTAGAAAAGAACGTCCCAAATAACA 58.781 34.615 0.00 0.00 0.00 2.41
1400 3178 7.722363 AGAAAAGAACGTCCCAAATAACAATT 58.278 30.769 0.00 0.00 0.00 2.32
1401 3179 8.852135 AGAAAAGAACGTCCCAAATAACAATTA 58.148 29.630 0.00 0.00 0.00 1.40
1402 3180 9.634163 GAAAAGAACGTCCCAAATAACAATTAT 57.366 29.630 0.00 0.00 0.00 1.28
1417 3195 6.932356 AACAATTATACGTCGAGGTCTCTA 57.068 37.500 15.00 2.79 0.00 2.43
1433 3215 4.082463 GGTCTCTATCATGGTCGAGATTCC 60.082 50.000 12.88 7.31 35.26 3.01
1457 3239 2.417257 CGTCCGTCCGTGGGGATTA 61.417 63.158 0.00 0.00 46.14 1.75
1498 3281 7.254727 GCTTTGCTCATGATTTTTGGTTGTTAA 60.255 33.333 0.00 0.00 0.00 2.01
1500 3283 7.655236 TGCTCATGATTTTTGGTTGTTAATG 57.345 32.000 0.00 0.00 0.00 1.90
1501 3284 7.215789 TGCTCATGATTTTTGGTTGTTAATGT 58.784 30.769 0.00 0.00 0.00 2.71
1647 3438 2.512286 CTGCATCACCCGCGTCAT 60.512 61.111 4.92 0.00 0.00 3.06
1670 3461 8.246180 TCATGCTCATTTTACAAGAGGATTTTC 58.754 33.333 0.00 0.00 38.20 2.29
1726 3519 9.941664 CAAATTAAGGATGTGATGTGATCTAAC 57.058 33.333 0.00 0.00 0.00 2.34
1728 3521 5.965033 AAGGATGTGATGTGATCTAACCT 57.035 39.130 0.00 0.00 0.00 3.50
1729 3522 8.547481 TTAAGGATGTGATGTGATCTAACCTA 57.453 34.615 0.00 0.00 0.00 3.08
1750 3543 0.101399 CACGACTGCTAGGGTGCTAG 59.899 60.000 0.00 0.00 0.00 3.42
1757 3550 3.117474 ACTGCTAGGGTGCTAGAGATGTA 60.117 47.826 0.00 0.00 0.00 2.29
1831 3624 1.417890 CTGACCATCTATTCCCGCCTT 59.582 52.381 0.00 0.00 0.00 4.35
1832 3625 1.843851 TGACCATCTATTCCCGCCTTT 59.156 47.619 0.00 0.00 0.00 3.11
1833 3626 2.241176 TGACCATCTATTCCCGCCTTTT 59.759 45.455 0.00 0.00 0.00 2.27
1834 3627 2.879026 GACCATCTATTCCCGCCTTTTC 59.121 50.000 0.00 0.00 0.00 2.29
1835 3628 2.241176 ACCATCTATTCCCGCCTTTTCA 59.759 45.455 0.00 0.00 0.00 2.69
1883 3676 6.293081 CCACAATGAAGCTAATAAGACATCCG 60.293 42.308 0.00 0.00 0.00 4.18
1910 3703 0.983467 TCCAGCTGCATGAGGTACAA 59.017 50.000 8.66 0.00 0.00 2.41
1978 3771 4.661993 TTTCATCTCACGTAACATGTGC 57.338 40.909 0.00 0.00 35.17 4.57
2084 3877 2.683211 AGGCCCTCAAAACTTCATGT 57.317 45.000 0.00 0.00 0.00 3.21
2092 3886 4.701651 CCTCAAAACTTCATGTGCTGGATA 59.298 41.667 0.00 0.00 0.00 2.59
2108 3902 7.996066 TGTGCTGGATATTATGGCTTTTACTTA 59.004 33.333 0.00 0.00 0.00 2.24
2122 3916 7.148222 TGGCTTTTACTTAGCGTGCAATTATTA 60.148 33.333 0.00 0.00 39.54 0.98
2134 3928 9.019764 AGCGTGCAATTATTATTTTTATGTCAC 57.980 29.630 0.00 0.00 0.00 3.67
2138 3932 9.232082 TGCAATTATTATTTTTATGTCACGAGC 57.768 29.630 0.00 0.00 0.00 5.03
2166 3960 5.244626 TCTTGTAGGTCGGTTATATAAGGCC 59.755 44.000 0.00 0.00 0.00 5.19
2261 4055 4.469227 AGCTAGGAGAAGATGAAGCAAGAA 59.531 41.667 0.00 0.00 32.42 2.52
2305 4099 4.811555 TGCGGTTGATTATTGTCATAGC 57.188 40.909 0.00 0.00 0.00 2.97
2350 4144 4.651778 TCAAGGTTTGTCCAGTTATCCTG 58.348 43.478 0.00 0.00 41.15 3.86
2352 4146 2.644798 AGGTTTGTCCAGTTATCCTGCT 59.355 45.455 0.00 0.00 40.06 4.24
2355 4149 3.334583 TTGTCCAGTTATCCTGCTCAC 57.665 47.619 0.00 0.00 40.06 3.51
2359 4153 3.196685 GTCCAGTTATCCTGCTCACTTCT 59.803 47.826 0.00 0.00 40.06 2.85
2360 4154 3.449018 TCCAGTTATCCTGCTCACTTCTC 59.551 47.826 0.00 0.00 40.06 2.87
2365 4159 5.009210 AGTTATCCTGCTCACTTCTCGATAC 59.991 44.000 0.00 0.00 0.00 2.24
2372 4166 6.149129 TGCTCACTTCTCGATACATGTAAT 57.851 37.500 10.14 0.00 0.00 1.89
2376 4170 7.114247 GCTCACTTCTCGATACATGTAATCTTC 59.886 40.741 10.14 1.84 0.00 2.87
2387 4183 9.678941 GATACATGTAATCTTCTACGTTGATGA 57.321 33.333 10.14 15.64 0.00 2.92
2392 4188 3.079960 TCTTCTACGTTGATGATCCGC 57.920 47.619 10.67 0.00 0.00 5.54
2396 4192 1.716050 CTACGTTGATGATCCGCGATG 59.284 52.381 8.23 0.00 0.00 3.84
2410 4206 3.044986 CCGCGATGCATTTCCTAATTTG 58.955 45.455 8.23 0.00 0.00 2.32
2415 4211 5.276270 CGATGCATTTCCTAATTTGTGGAG 58.724 41.667 0.00 0.00 33.46 3.86
2425 4221 9.589461 TTTCCTAATTTGTGGAGGTTTTATGTA 57.411 29.630 0.00 0.00 33.46 2.29
2523 4319 5.356882 TTCTCCGCAAACAAAAGTATGAG 57.643 39.130 0.00 0.00 0.00 2.90
2555 4351 8.102047 CCTAGTTGGCTAGTAGCTAGAAGTATA 58.898 40.741 21.20 0.00 42.35 1.47
2961 4766 8.684386 TTTCTTGTCATGTGAAATTGGTAGTA 57.316 30.769 0.00 0.00 0.00 1.82
2992 4797 3.953712 TGCCGTTTTCTCTACAGATCA 57.046 42.857 0.00 0.00 0.00 2.92
3199 5004 4.503910 ACACTTGCTCTTTTTGTTTTCCC 58.496 39.130 0.00 0.00 0.00 3.97
3220 5025 4.952335 CCCTTTTGCAGAGGATAACAATCT 59.048 41.667 17.25 0.00 36.33 2.40
3228 5033 6.126507 TGCAGAGGATAACAATCTCCCAAATA 60.127 38.462 0.00 0.00 31.49 1.40
3255 5060 6.497954 TGGAAGATGAATGGTTCAAAAAGGAT 59.502 34.615 0.00 0.00 43.95 3.24
3375 5180 4.910195 TCCTGTTCTGCAGTTGACATATT 58.090 39.130 14.67 0.00 43.55 1.28
3425 5230 7.441157 TCGATGGCTCCTGTTTATTTATTACTG 59.559 37.037 0.00 0.00 0.00 2.74
3629 5436 9.764363 TGATATCCAATGTCATTACTGAAGTAC 57.236 33.333 0.00 0.00 31.85 2.73
3639 5446 6.521162 TCATTACTGAAGTACTGACAAGCAA 58.479 36.000 0.00 0.00 35.95 3.91
3749 5626 7.188468 CCTTGTTGGTTCACAAATAATTTGG 57.812 36.000 0.00 0.00 44.81 3.28
3758 5635 7.441836 GTTCACAAATAATTTGGTCCTTCCTT 58.558 34.615 0.00 0.00 44.81 3.36
3796 5673 1.215382 GCGGGAAACATCCTTTGCC 59.785 57.895 0.00 0.00 36.67 4.52
3835 5712 9.605275 CCACAAGAGATCATGTCTAAAATAGAA 57.395 33.333 0.00 0.00 37.29 2.10
3868 5745 1.879380 CCTCTTGGTTTCAATGTGCGA 59.121 47.619 0.00 0.00 31.75 5.10
3907 5784 6.353082 AGGTAACCATTATGTTCCTCAAGAGG 60.353 42.308 9.90 9.90 44.64 3.69
3970 5847 8.010733 TCTGTTTTTGAACTTCCAGATGAAAT 57.989 30.769 0.00 0.00 31.06 2.17
4025 5902 2.736347 ATCTGTAGCAACGGAGGTACT 58.264 47.619 16.15 0.00 44.19 2.73
4043 5920 0.029567 CTGACTCTGTCGCCGATACC 59.970 60.000 0.00 0.00 34.95 2.73
4055 5932 3.005050 TCGCCGATACCGAGACATTAAAT 59.995 43.478 0.00 0.00 38.22 1.40
4061 5938 7.170320 GCCGATACCGAGACATTAAATTCTTAA 59.830 37.037 0.00 0.00 38.22 1.85
4093 5971 3.378427 CCACTAAAATTCTGCTGCTACCC 59.622 47.826 0.00 0.00 0.00 3.69
4101 5979 4.689612 TTCTGCTGCTACCCCTAATTAG 57.310 45.455 5.43 5.43 0.00 1.73
4108 5986 5.247337 GCTGCTACCCCTAATTAGAAGATCT 59.753 44.000 14.28 0.00 0.00 2.75
4184 6111 1.238439 CCACCGCAATGGCTATAAGG 58.762 55.000 0.00 0.00 43.94 2.69
4185 6112 0.593128 CACCGCAATGGCTATAAGGC 59.407 55.000 0.00 0.00 43.94 4.35
4186 6113 0.474184 ACCGCAATGGCTATAAGGCT 59.526 50.000 2.01 0.00 43.94 4.58
4187 6114 0.877071 CCGCAATGGCTATAAGGCTG 59.123 55.000 2.01 0.00 41.96 4.85
4188 6115 0.239347 CGCAATGGCTATAAGGCTGC 59.761 55.000 2.01 3.74 41.96 5.25
4189 6116 1.321474 GCAATGGCTATAAGGCTGCA 58.679 50.000 0.50 0.00 40.24 4.41
4214 6143 5.450171 CAACTTTTGCTCTGAGTTCTCATG 58.550 41.667 6.53 0.00 31.63 3.07
4216 6145 2.105006 TTGCTCTGAGTTCTCATGCC 57.895 50.000 17.89 6.30 0.00 4.40
4269 6199 3.550842 GCGTGTGATCCTTTTCTTTGCTT 60.551 43.478 0.00 0.00 0.00 3.91
4270 6200 4.320202 GCGTGTGATCCTTTTCTTTGCTTA 60.320 41.667 0.00 0.00 0.00 3.09
4271 6201 5.757886 CGTGTGATCCTTTTCTTTGCTTAA 58.242 37.500 0.00 0.00 0.00 1.85
4272 6202 5.853282 CGTGTGATCCTTTTCTTTGCTTAAG 59.147 40.000 0.00 0.00 35.04 1.85
4273 6203 6.513393 CGTGTGATCCTTTTCTTTGCTTAAGT 60.513 38.462 4.02 0.00 35.28 2.24
4274 6204 7.307751 CGTGTGATCCTTTTCTTTGCTTAAGTA 60.308 37.037 4.02 0.00 35.28 2.24
4275 6205 7.803659 GTGTGATCCTTTTCTTTGCTTAAGTAC 59.196 37.037 4.02 0.00 35.28 2.73
4276 6206 7.719633 TGTGATCCTTTTCTTTGCTTAAGTACT 59.280 33.333 4.02 0.00 35.28 2.73
4277 6207 9.216117 GTGATCCTTTTCTTTGCTTAAGTACTA 57.784 33.333 4.02 0.00 35.28 1.82
4462 6410 9.520204 CTGAAACAATTAACACTGTTTTCTCAT 57.480 29.630 11.41 0.00 43.88 2.90
4537 6485 6.322456 TGTGGAAAACTGAATCCAACACAATA 59.678 34.615 0.00 0.00 46.78 1.90
4561 6509 0.530744 AATAGTCGCGGTGAGCTTCA 59.469 50.000 6.13 0.00 45.59 3.02
4605 6553 1.132849 TGTTCTCCCACCCTCTTCTCA 60.133 52.381 0.00 0.00 0.00 3.27
4777 6726 2.811317 CAGTCCGCCGTCTCTTGC 60.811 66.667 0.00 0.00 0.00 4.01
5001 6951 5.620206 TCAGACTTGAGATTGTAAGGCAAA 58.380 37.500 0.00 0.00 40.91 3.68
5038 6988 1.741525 CCAGGGTTGTGTGCCTTTG 59.258 57.895 0.00 0.00 0.00 2.77
5119 7072 4.776435 TGATGCATCTTCATGACCCTTA 57.224 40.909 26.32 0.00 30.57 2.69
5144 7849 0.797249 CGAAGCCGGTCTAGTTGACG 60.797 60.000 1.90 0.00 46.24 4.35
5148 7853 1.136147 CCGGTCTAGTTGACGGTCG 59.864 63.158 3.34 3.91 46.24 4.79
5155 7860 4.450080 GGTCTAGTTGACGGTCGAAAAATT 59.550 41.667 0.00 0.00 46.24 1.82
5158 7863 4.625972 AGTTGACGGTCGAAAAATTGTT 57.374 36.364 0.00 0.00 0.00 2.83
5180 7885 2.558359 GTGCTAAGACTTTGGCCAACAT 59.442 45.455 20.35 9.35 39.80 2.71
5217 7922 8.773645 CATCCGTTGCTATGAAGAATAACATAA 58.226 33.333 0.00 0.00 0.00 1.90
5270 8016 4.301505 GCGTTGGCTGAATCCAGA 57.698 55.556 0.00 0.00 43.02 3.86
5275 8021 2.586792 GGCTGAATCCAGACGGCT 59.413 61.111 0.00 0.00 43.02 5.52
5276 8022 1.823295 GGCTGAATCCAGACGGCTA 59.177 57.895 0.00 0.00 43.02 3.93
5277 8023 0.530870 GGCTGAATCCAGACGGCTAC 60.531 60.000 0.00 0.00 43.02 3.58
5278 8024 0.872021 GCTGAATCCAGACGGCTACG 60.872 60.000 0.00 0.00 43.02 3.51
5279 8025 0.872021 CTGAATCCAGACGGCTACGC 60.872 60.000 0.00 0.00 46.04 4.42
5280 8026 1.320344 TGAATCCAGACGGCTACGCT 61.320 55.000 0.00 0.00 46.04 5.07
5291 8037 1.220749 GCTACGCTGGGGATCAACA 59.779 57.895 0.00 0.00 0.00 3.33
5321 8067 1.272092 CCCAAGCAGATCTGGTGGAAA 60.272 52.381 29.40 0.00 41.62 3.13
5346 8092 0.811616 CTCCACACATCCTAAGCCGC 60.812 60.000 0.00 0.00 0.00 6.53
5393 8139 2.158957 TGTGGCGGAGAGGACATTATTC 60.159 50.000 0.00 0.00 0.00 1.75
5405 8151 5.088026 AGGACATTATTCTACCTCTAGGCC 58.912 45.833 0.00 0.00 39.32 5.19
5446 8192 0.250038 CGACCCATAGATGCCACTGG 60.250 60.000 0.00 0.00 0.00 4.00
5456 8202 2.746277 GCCACTGGCCACGGTAAG 60.746 66.667 16.24 2.22 44.06 2.34
5457 8203 3.065306 CCACTGGCCACGGTAAGA 58.935 61.111 0.00 0.00 34.02 2.10
5458 8204 1.373435 CCACTGGCCACGGTAAGAA 59.627 57.895 0.00 0.00 34.02 2.52
5459 8205 0.673644 CCACTGGCCACGGTAAGAAG 60.674 60.000 0.00 0.00 34.02 2.85
5460 8206 0.320374 CACTGGCCACGGTAAGAAGA 59.680 55.000 0.00 0.00 34.02 2.87
5461 8207 1.053424 ACTGGCCACGGTAAGAAGAA 58.947 50.000 0.00 0.00 33.46 2.52
5462 8208 1.270678 ACTGGCCACGGTAAGAAGAAC 60.271 52.381 0.00 0.00 33.46 3.01
5463 8209 0.759959 TGGCCACGGTAAGAAGAACA 59.240 50.000 0.00 0.00 0.00 3.18
5464 8210 1.349688 TGGCCACGGTAAGAAGAACAT 59.650 47.619 0.00 0.00 0.00 2.71
5465 8211 2.007608 GGCCACGGTAAGAAGAACATC 58.992 52.381 0.00 0.00 0.00 3.06
5466 8212 2.007608 GCCACGGTAAGAAGAACATCC 58.992 52.381 0.00 0.00 0.00 3.51
5467 8213 2.614481 GCCACGGTAAGAAGAACATCCA 60.614 50.000 0.00 0.00 0.00 3.41
5468 8214 3.000727 CCACGGTAAGAAGAACATCCAC 58.999 50.000 0.00 0.00 0.00 4.02
5469 8215 3.556213 CCACGGTAAGAAGAACATCCACA 60.556 47.826 0.00 0.00 0.00 4.17
5470 8216 4.253685 CACGGTAAGAAGAACATCCACAT 58.746 43.478 0.00 0.00 0.00 3.21
5471 8217 4.330074 CACGGTAAGAAGAACATCCACATC 59.670 45.833 0.00 0.00 0.00 3.06
5472 8218 4.020573 ACGGTAAGAAGAACATCCACATCA 60.021 41.667 0.00 0.00 0.00 3.07
5473 8219 4.935205 CGGTAAGAAGAACATCCACATCAA 59.065 41.667 0.00 0.00 0.00 2.57
5474 8220 5.411361 CGGTAAGAAGAACATCCACATCAAA 59.589 40.000 0.00 0.00 0.00 2.69
5475 8221 6.402550 CGGTAAGAAGAACATCCACATCAAAG 60.403 42.308 0.00 0.00 0.00 2.77
5476 8222 6.655003 GGTAAGAAGAACATCCACATCAAAGA 59.345 38.462 0.00 0.00 0.00 2.52
5477 8223 7.337942 GGTAAGAAGAACATCCACATCAAAGAT 59.662 37.037 0.00 0.00 0.00 2.40
5478 8224 9.383519 GTAAGAAGAACATCCACATCAAAGATA 57.616 33.333 0.00 0.00 0.00 1.98
5479 8225 8.503458 AAGAAGAACATCCACATCAAAGATAG 57.497 34.615 0.00 0.00 0.00 2.08
5480 8226 7.855375 AGAAGAACATCCACATCAAAGATAGA 58.145 34.615 0.00 0.00 0.00 1.98
5481 8227 7.768120 AGAAGAACATCCACATCAAAGATAGAC 59.232 37.037 0.00 0.00 0.00 2.59
5482 8228 6.352516 AGAACATCCACATCAAAGATAGACC 58.647 40.000 0.00 0.00 0.00 3.85
5483 8229 5.965033 ACATCCACATCAAAGATAGACCT 57.035 39.130 0.00 0.00 0.00 3.85
5484 8230 5.678583 ACATCCACATCAAAGATAGACCTG 58.321 41.667 0.00 0.00 0.00 4.00
5485 8231 5.426509 ACATCCACATCAAAGATAGACCTGA 59.573 40.000 0.00 0.00 0.00 3.86
5486 8232 6.070021 ACATCCACATCAAAGATAGACCTGAA 60.070 38.462 0.00 0.00 0.00 3.02
5487 8233 6.566079 TCCACATCAAAGATAGACCTGAAT 57.434 37.500 0.00 0.00 0.00 2.57
5488 8234 6.962182 TCCACATCAAAGATAGACCTGAATT 58.038 36.000 0.00 0.00 0.00 2.17
5489 8235 7.405292 TCCACATCAAAGATAGACCTGAATTT 58.595 34.615 0.00 0.00 0.00 1.82
5490 8236 7.337689 TCCACATCAAAGATAGACCTGAATTTG 59.662 37.037 0.00 0.00 0.00 2.32
5491 8237 7.415989 CCACATCAAAGATAGACCTGAATTTGG 60.416 40.741 0.00 0.00 0.00 3.28
5492 8238 7.121759 CACATCAAAGATAGACCTGAATTTGGT 59.878 37.037 4.07 4.07 41.07 3.67
5493 8239 7.671398 ACATCAAAGATAGACCTGAATTTGGTT 59.329 33.333 5.70 0.73 38.03 3.67
5494 8240 8.526147 CATCAAAGATAGACCTGAATTTGGTTT 58.474 33.333 5.70 3.46 38.03 3.27
5495 8241 9.753674 ATCAAAGATAGACCTGAATTTGGTTTA 57.246 29.630 5.70 5.29 38.03 2.01
5496 8242 9.581289 TCAAAGATAGACCTGAATTTGGTTTAA 57.419 29.630 5.70 0.00 38.03 1.52
5497 8243 9.626045 CAAAGATAGACCTGAATTTGGTTTAAC 57.374 33.333 5.70 4.26 38.03 2.01
5498 8244 7.939784 AGATAGACCTGAATTTGGTTTAACC 57.060 36.000 7.27 7.27 38.03 2.85
5499 8245 6.890268 AGATAGACCTGAATTTGGTTTAACCC 59.110 38.462 12.02 0.00 37.50 4.11
5500 8246 4.810345 AGACCTGAATTTGGTTTAACCCA 58.190 39.130 12.02 0.00 37.50 4.51
5501 8247 5.212745 AGACCTGAATTTGGTTTAACCCAA 58.787 37.500 12.02 7.42 42.69 4.12
5502 8248 5.304357 AGACCTGAATTTGGTTTAACCCAAG 59.696 40.000 12.02 0.00 44.93 3.61
5503 8249 4.966168 ACCTGAATTTGGTTTAACCCAAGT 59.034 37.500 12.02 6.12 44.93 3.16
5504 8250 6.137559 ACCTGAATTTGGTTTAACCCAAGTA 58.862 36.000 12.02 0.00 44.93 2.24
5505 8251 6.785466 ACCTGAATTTGGTTTAACCCAAGTAT 59.215 34.615 12.02 0.00 44.93 2.12
5506 8252 7.039293 ACCTGAATTTGGTTTAACCCAAGTATC 60.039 37.037 12.02 7.70 44.93 2.24
5507 8253 6.915349 TGAATTTGGTTTAACCCAAGTATCG 58.085 36.000 12.02 0.00 44.93 2.92
5508 8254 4.769859 TTTGGTTTAACCCAAGTATCGC 57.230 40.909 12.02 0.00 44.93 4.58
5509 8255 2.713877 TGGTTTAACCCAAGTATCGCC 58.286 47.619 12.02 0.00 37.50 5.54
5510 8256 2.306512 TGGTTTAACCCAAGTATCGCCT 59.693 45.455 12.02 0.00 37.50 5.52
5511 8257 2.941064 GGTTTAACCCAAGTATCGCCTC 59.059 50.000 2.04 0.00 30.04 4.70
5512 8258 2.941064 GTTTAACCCAAGTATCGCCTCC 59.059 50.000 0.00 0.00 0.00 4.30
5513 8259 1.868713 TAACCCAAGTATCGCCTCCA 58.131 50.000 0.00 0.00 0.00 3.86
5514 8260 1.213296 AACCCAAGTATCGCCTCCAT 58.787 50.000 0.00 0.00 0.00 3.41
5515 8261 0.469917 ACCCAAGTATCGCCTCCATG 59.530 55.000 0.00 0.00 0.00 3.66
5516 8262 0.758734 CCCAAGTATCGCCTCCATGA 59.241 55.000 0.00 0.00 0.00 3.07
5517 8263 1.541233 CCCAAGTATCGCCTCCATGAC 60.541 57.143 0.00 0.00 0.00 3.06
5518 8264 1.138859 CCAAGTATCGCCTCCATGACA 59.861 52.381 0.00 0.00 0.00 3.58
5519 8265 2.224378 CCAAGTATCGCCTCCATGACAT 60.224 50.000 0.00 0.00 0.00 3.06
5520 8266 3.470709 CAAGTATCGCCTCCATGACATT 58.529 45.455 0.00 0.00 0.00 2.71
5521 8267 3.393089 AGTATCGCCTCCATGACATTC 57.607 47.619 0.00 0.00 0.00 2.67
5522 8268 2.700371 AGTATCGCCTCCATGACATTCA 59.300 45.455 0.00 0.00 0.00 2.57
5523 8269 2.945080 ATCGCCTCCATGACATTCAT 57.055 45.000 0.00 0.00 37.65 2.57
5532 8278 2.425143 ATGACATTCATGGCCGAAGT 57.575 45.000 0.00 0.00 35.43 3.01
5533 8279 1.452110 TGACATTCATGGCCGAAGTG 58.548 50.000 0.00 0.00 33.92 3.16
5534 8280 0.099436 GACATTCATGGCCGAAGTGC 59.901 55.000 0.00 0.00 0.00 4.40
5542 8288 4.301505 GCCGAAGTGCCTCATGAA 57.698 55.556 0.00 0.00 0.00 2.57
5543 8289 2.093216 GCCGAAGTGCCTCATGAAG 58.907 57.895 0.00 0.00 0.00 3.02
5544 8290 1.986575 GCCGAAGTGCCTCATGAAGC 61.987 60.000 9.47 9.47 0.00 3.86
5545 8291 0.674581 CCGAAGTGCCTCATGAAGCA 60.675 55.000 15.05 15.05 36.44 3.91
5546 8292 0.725686 CGAAGTGCCTCATGAAGCAG 59.274 55.000 19.24 4.15 40.28 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.034337 GGTCGGACTGTAGGTGCAAA 59.966 55.000 8.23 0.00 35.96 3.68
12 13 2.577593 GGGTCGGACTGTAGGTGC 59.422 66.667 8.23 0.00 0.00 5.01
36 37 1.807165 CATGGTGCCTCTCGTGTCG 60.807 63.158 0.00 0.00 0.00 4.35
39 40 0.603707 AACACATGGTGCCTCTCGTG 60.604 55.000 0.00 0.00 36.98 4.35
112 113 5.862924 TCTTCTTGACGCTCCATTTTAAG 57.137 39.130 0.00 0.00 0.00 1.85
125 126 9.967346 TGCTATAGTGTTATGTATCTTCTTGAC 57.033 33.333 0.84 0.00 0.00 3.18
145 146 0.177141 GAGGTTGGGCGTGTGCTATA 59.823 55.000 0.00 0.00 42.25 1.31
147 148 0.901114 TAGAGGTTGGGCGTGTGCTA 60.901 55.000 0.00 0.00 42.25 3.49
149 150 2.033194 GTAGAGGTTGGGCGTGTGC 61.033 63.158 0.00 0.00 41.71 4.57
150 151 0.036388 ATGTAGAGGTTGGGCGTGTG 60.036 55.000 0.00 0.00 0.00 3.82
151 152 1.480954 CTATGTAGAGGTTGGGCGTGT 59.519 52.381 0.00 0.00 0.00 4.49
152 153 1.806623 GCTATGTAGAGGTTGGGCGTG 60.807 57.143 0.00 0.00 0.00 5.34
153 154 0.464452 GCTATGTAGAGGTTGGGCGT 59.536 55.000 0.00 0.00 0.00 5.68
154 155 0.753262 AGCTATGTAGAGGTTGGGCG 59.247 55.000 0.00 0.00 0.00 6.13
155 156 3.835395 AGATAGCTATGTAGAGGTTGGGC 59.165 47.826 11.94 0.00 0.00 5.36
156 157 6.426646 AAAGATAGCTATGTAGAGGTTGGG 57.573 41.667 11.94 0.00 0.00 4.12
180 182 5.220605 GCGCTTGTTTCTAGACGGATTTTAT 60.221 40.000 0.00 0.00 0.00 1.40
181 183 4.092383 GCGCTTGTTTCTAGACGGATTTTA 59.908 41.667 0.00 0.00 0.00 1.52
183 185 2.415512 GCGCTTGTTTCTAGACGGATTT 59.584 45.455 0.00 0.00 0.00 2.17
211 213 2.032290 TCGTCCACGTCAGAATATAGCG 60.032 50.000 0.00 0.00 40.80 4.26
220 223 1.567504 AAACACTTCGTCCACGTCAG 58.432 50.000 0.00 0.00 40.80 3.51
221 224 2.012937 AAAACACTTCGTCCACGTCA 57.987 45.000 0.00 0.00 40.80 4.35
224 227 1.193874 GCCTAAAACACTTCGTCCACG 59.806 52.381 0.00 0.00 41.45 4.94
280 284 1.078214 TCCAAGCCTGAATCTGCCG 60.078 57.895 0.00 0.00 0.00 5.69
317 322 2.603953 GGCGGTCAGTTAGTTAGTCAC 58.396 52.381 0.00 0.00 0.00 3.67
327 333 4.003788 CTCACCCGGCGGTCAGTT 62.004 66.667 26.32 0.00 42.04 3.16
431 437 2.202837 GCGCGAGATAAACCGGGT 60.203 61.111 12.10 0.00 40.22 5.28
455 1734 0.103208 GTCTCCGTGTGCCTATCCAG 59.897 60.000 0.00 0.00 0.00 3.86
463 1742 4.760047 ATGGCCGTCTCCGTGTGC 62.760 66.667 0.00 0.00 0.00 4.57
467 1754 2.267961 GGAAATGGCCGTCTCCGT 59.732 61.111 0.28 0.00 0.00 4.69
468 1755 2.106683 GTGGAAATGGCCGTCTCCG 61.107 63.158 12.82 0.00 0.00 4.63
469 1756 2.106683 CGTGGAAATGGCCGTCTCC 61.107 63.158 10.73 10.73 0.00 3.71
470 1757 1.079405 TCGTGGAAATGGCCGTCTC 60.079 57.895 0.00 0.00 0.00 3.36
471 1758 1.375523 GTCGTGGAAATGGCCGTCT 60.376 57.895 0.00 0.00 0.00 4.18
472 1759 2.396157 GGTCGTGGAAATGGCCGTC 61.396 63.158 0.00 0.00 0.00 4.79
494 1781 1.136336 GTCTGTTTGTTCCGATCGCAC 60.136 52.381 10.32 9.14 0.00 5.34
495 1782 1.144969 GTCTGTTTGTTCCGATCGCA 58.855 50.000 10.32 0.00 0.00 5.10
496 1783 0.093026 CGTCTGTTTGTTCCGATCGC 59.907 55.000 10.32 0.00 0.00 4.58
528 1826 3.428282 CGTGGGTGCGGGTAAAGC 61.428 66.667 0.00 0.00 0.00 3.51
536 1834 3.726517 CCTTGCTTCGTGGGTGCG 61.727 66.667 0.00 0.00 0.00 5.34
537 1835 0.392461 TATCCTTGCTTCGTGGGTGC 60.392 55.000 0.00 0.00 0.00 5.01
548 1846 2.408050 CTACGTGCCATCTATCCTTGC 58.592 52.381 0.00 0.00 0.00 4.01
550 1848 1.000163 CGCTACGTGCCATCTATCCTT 60.000 52.381 0.00 0.00 38.78 3.36
556 1854 0.100682 CAGTACGCTACGTGCCATCT 59.899 55.000 0.00 0.00 42.98 2.90
557 1855 1.480219 GCAGTACGCTACGTGCCATC 61.480 60.000 0.00 0.00 42.98 3.51
558 1856 1.518572 GCAGTACGCTACGTGCCAT 60.519 57.895 0.00 0.00 42.98 4.40
559 1857 2.126228 GCAGTACGCTACGTGCCA 60.126 61.111 0.00 0.00 42.98 4.92
587 1987 2.704190 AAAGAGAGAGGACCAGACCA 57.296 50.000 0.00 0.00 0.00 4.02
588 1988 2.761767 GGTAAAGAGAGAGGACCAGACC 59.238 54.545 0.00 0.00 0.00 3.85
589 1989 2.424246 CGGTAAAGAGAGAGGACCAGAC 59.576 54.545 0.00 0.00 0.00 3.51
591 1991 2.424246 GACGGTAAAGAGAGAGGACCAG 59.576 54.545 0.00 0.00 0.00 4.00
630 2037 1.609555 GCGTGGATAGCTACTAGTGCT 59.390 52.381 19.21 19.21 43.79 4.40
631 2038 1.336056 GGCGTGGATAGCTACTAGTGC 60.336 57.143 5.39 7.40 34.52 4.40
632 2039 1.954382 TGGCGTGGATAGCTACTAGTG 59.046 52.381 5.39 0.00 34.52 2.74
633 2040 1.955080 GTGGCGTGGATAGCTACTAGT 59.045 52.381 0.00 0.00 41.86 2.57
634 2041 1.069159 CGTGGCGTGGATAGCTACTAG 60.069 57.143 0.00 0.00 42.74 2.57
641 2055 4.155733 TGGGCGTGGCGTGGATAG 62.156 66.667 0.00 0.00 0.00 2.08
700 2114 1.308326 CGTCTCCCCCTTCTCTCCT 59.692 63.158 0.00 0.00 0.00 3.69
704 2118 1.075151 ATCCCGTCTCCCCCTTCTC 60.075 63.158 0.00 0.00 0.00 2.87
705 2119 1.383248 CATCCCGTCTCCCCCTTCT 60.383 63.158 0.00 0.00 0.00 2.85
707 2121 2.366972 CCATCCCGTCTCCCCCTT 60.367 66.667 0.00 0.00 0.00 3.95
708 2122 4.499116 CCCATCCCGTCTCCCCCT 62.499 72.222 0.00 0.00 0.00 4.79
709 2123 4.492303 TCCCATCCCGTCTCCCCC 62.492 72.222 0.00 0.00 0.00 5.40
710 2124 3.162154 GTCCCATCCCGTCTCCCC 61.162 72.222 0.00 0.00 0.00 4.81
711 2125 3.162154 GGTCCCATCCCGTCTCCC 61.162 72.222 0.00 0.00 0.00 4.30
712 2126 3.162154 GGGTCCCATCCCGTCTCC 61.162 72.222 1.78 0.00 37.93 3.71
808 2230 2.361438 ACGGCCGGTTTATAAGAGAGAG 59.639 50.000 31.76 0.00 0.00 3.20
856 2572 2.041265 TCTCCCTTCCTCCCTGCC 59.959 66.667 0.00 0.00 0.00 4.85
857 2573 1.002274 TCTCTCCCTTCCTCCCTGC 59.998 63.158 0.00 0.00 0.00 4.85
858 2574 0.689412 GGTCTCTCCCTTCCTCCCTG 60.689 65.000 0.00 0.00 0.00 4.45
859 2575 1.707200 GGTCTCTCCCTTCCTCCCT 59.293 63.158 0.00 0.00 0.00 4.20
860 2576 4.384720 GGTCTCTCCCTTCCTCCC 57.615 66.667 0.00 0.00 0.00 4.30
1170 2902 1.364626 CCTGCTCGACCATCTTGTGC 61.365 60.000 0.00 0.00 0.00 4.57
1200 2936 1.402787 GCGTGGGATTGATTTGGGAT 58.597 50.000 0.00 0.00 0.00 3.85
1246 3015 8.898761 TGCATCGTTAATCATTAATTAAGGTGT 58.101 29.630 9.50 2.38 42.40 4.16
1271 3040 0.668706 CGAATCAGCCCGCCTAGATG 60.669 60.000 0.00 0.00 0.00 2.90
1303 3072 5.241285 GGTCGTAATTTAGGGGTTTGTTTCA 59.759 40.000 0.00 0.00 0.00 2.69
1318 3091 1.585214 GTCGATTTCGCGGTCGTAATT 59.415 47.619 21.90 1.46 36.15 1.40
1329 3102 8.432359 TCCGATGAATAAATTATGTCGATTTCG 58.568 33.333 13.52 0.00 41.45 3.46
1332 3105 8.094548 TCCTCCGATGAATAAATTATGTCGATT 58.905 33.333 13.52 0.00 0.00 3.34
1335 3108 6.090898 GGTCCTCCGATGAATAAATTATGTCG 59.909 42.308 8.01 8.01 0.00 4.35
1336 3109 7.365840 GGTCCTCCGATGAATAAATTATGTC 57.634 40.000 0.00 0.00 0.00 3.06
1374 3152 7.804843 TTGTTATTTGGGACGTTCTTTTCTA 57.195 32.000 0.00 0.00 0.00 2.10
1375 3153 6.702716 TTGTTATTTGGGACGTTCTTTTCT 57.297 33.333 0.00 0.00 0.00 2.52
1397 3175 7.148222 CCATGATAGAGACCTCGACGTATAATT 60.148 40.741 0.00 0.00 34.09 1.40
1400 3178 5.176592 CCATGATAGAGACCTCGACGTATA 58.823 45.833 0.00 0.00 34.09 1.47
1401 3179 4.004314 CCATGATAGAGACCTCGACGTAT 58.996 47.826 0.00 0.00 34.09 3.06
1402 3180 3.181457 ACCATGATAGAGACCTCGACGTA 60.181 47.826 0.00 0.00 34.09 3.57
1417 3195 2.366916 GACAGGGAATCTCGACCATGAT 59.633 50.000 10.94 0.00 39.85 2.45
1433 3215 4.415332 CACGGACGGACGGACAGG 62.415 72.222 6.00 0.00 38.39 4.00
1457 3239 2.545742 GCAAAGCTGACACCGGAAAAAT 60.546 45.455 9.46 0.00 0.00 1.82
1525 3313 9.255304 GCATCAACCTGTTCTTTGTTTTTATTA 57.745 29.630 0.00 0.00 0.00 0.98
1527 3315 6.705825 GGCATCAACCTGTTCTTTGTTTTTAT 59.294 34.615 0.00 0.00 0.00 1.40
1528 3316 6.045955 GGCATCAACCTGTTCTTTGTTTTTA 58.954 36.000 0.00 0.00 0.00 1.52
1529 3317 4.875536 GGCATCAACCTGTTCTTTGTTTTT 59.124 37.500 0.00 0.00 0.00 1.94
1578 3367 4.851014 CGTTTTGCAAAGCTAATTCGATGA 59.149 37.500 21.49 0.00 0.00 2.92
1647 3438 7.765695 AGAAAATCCTCTTGTAAAATGAGCA 57.234 32.000 0.00 0.00 0.00 4.26
1713 3506 5.417894 AGTCGTGTTAGGTTAGATCACATCA 59.582 40.000 0.00 0.00 0.00 3.07
1714 3507 5.744345 CAGTCGTGTTAGGTTAGATCACATC 59.256 44.000 0.00 0.00 0.00 3.06
1728 3521 0.245539 GCACCCTAGCAGTCGTGTTA 59.754 55.000 0.00 0.00 0.00 2.41
1729 3522 1.004918 GCACCCTAGCAGTCGTGTT 60.005 57.895 0.00 0.00 0.00 3.32
1750 3543 7.278868 CAGGAGTTGAGGTAAACATTACATCTC 59.721 40.741 13.84 7.61 32.21 2.75
1757 3550 3.074412 CGCAGGAGTTGAGGTAAACATT 58.926 45.455 0.00 0.00 32.21 2.71
1831 3624 7.201609 CGATCTCCCGTTTAATCTGAAATGAAA 60.202 37.037 0.00 0.00 0.00 2.69
1832 3625 6.257849 CGATCTCCCGTTTAATCTGAAATGAA 59.742 38.462 0.00 0.00 0.00 2.57
1833 3626 5.753438 CGATCTCCCGTTTAATCTGAAATGA 59.247 40.000 0.00 0.00 0.00 2.57
1834 3627 5.559035 GCGATCTCCCGTTTAATCTGAAATG 60.559 44.000 0.00 0.00 0.00 2.32
1835 3628 4.511826 GCGATCTCCCGTTTAATCTGAAAT 59.488 41.667 0.00 0.00 0.00 2.17
1883 3676 0.454600 CATGCAGCTGGACCACATTC 59.545 55.000 17.12 0.00 0.00 2.67
1910 3703 4.101741 ACTGTCTCTGCAAGAAAACTAGGT 59.898 41.667 0.00 0.00 46.34 3.08
1956 3749 4.201714 CGCACATGTTACGTGAGATGAAAT 60.202 41.667 21.92 0.00 36.41 2.17
1978 3771 0.179156 GCCATCACCTGTGAAATGCG 60.179 55.000 3.79 0.00 43.58 4.73
2067 3860 1.615392 AGCACATGAAGTTTTGAGGGC 59.385 47.619 0.00 0.00 0.00 5.19
2084 3877 7.174946 GCTAAGTAAAAGCCATAATATCCAGCA 59.825 37.037 0.00 0.00 33.73 4.41
2092 3886 4.638421 TGCACGCTAAGTAAAAGCCATAAT 59.362 37.500 0.00 0.00 36.60 1.28
2108 3902 9.019764 GTGACATAAAAATAATAATTGCACGCT 57.980 29.630 0.00 0.00 0.00 5.07
2122 3916 8.268850 ACAAGATAAGCTCGTGACATAAAAAT 57.731 30.769 0.00 0.00 36.90 1.82
2125 3919 6.978659 CCTACAAGATAAGCTCGTGACATAAA 59.021 38.462 0.00 0.00 36.90 1.40
2126 3920 6.096423 ACCTACAAGATAAGCTCGTGACATAA 59.904 38.462 0.00 0.00 36.90 1.90
2127 3921 5.593095 ACCTACAAGATAAGCTCGTGACATA 59.407 40.000 0.00 0.00 36.90 2.29
2134 3928 2.358267 ACCGACCTACAAGATAAGCTCG 59.642 50.000 0.00 0.00 0.00 5.03
2145 3939 4.281688 GTGGCCTTATATAACCGACCTACA 59.718 45.833 3.32 0.00 0.00 2.74
2203 3997 8.642935 TGACCTAATTGTCCACAAAATATTGA 57.357 30.769 0.00 0.00 39.55 2.57
2218 4012 4.952335 AGCTTCCCAGAATTGACCTAATTG 59.048 41.667 0.00 0.00 39.06 2.32
2261 4055 7.226720 CGCATTTATAAGTTGGTGGAAGTATCT 59.773 37.037 0.00 0.00 0.00 1.98
2350 4144 6.442952 AGATTACATGTATCGAGAAGTGAGC 58.557 40.000 6.36 0.00 0.00 4.26
2352 4146 8.226819 AGAAGATTACATGTATCGAGAAGTGA 57.773 34.615 6.36 0.00 0.00 3.41
2355 4149 8.283992 ACGTAGAAGATTACATGTATCGAGAAG 58.716 37.037 6.36 0.00 0.00 2.85
2359 4153 7.922837 TCAACGTAGAAGATTACATGTATCGA 58.077 34.615 6.36 0.00 0.00 3.59
2360 4154 8.630840 CATCAACGTAGAAGATTACATGTATCG 58.369 37.037 6.36 4.95 0.00 2.92
2365 4159 7.148902 CGGATCATCAACGTAGAAGATTACATG 60.149 40.741 0.00 0.00 0.00 3.21
2372 4166 2.540973 CGCGGATCATCAACGTAGAAGA 60.541 50.000 0.00 0.00 0.00 2.87
2376 4170 1.716050 CATCGCGGATCATCAACGTAG 59.284 52.381 6.13 0.00 0.00 3.51
2387 4183 2.254546 TTAGGAAATGCATCGCGGAT 57.745 45.000 6.13 0.00 0.00 4.18
2392 4188 5.247507 TCCACAAATTAGGAAATGCATCG 57.752 39.130 0.00 0.00 0.00 3.84
2396 4192 5.405935 AACCTCCACAAATTAGGAAATGC 57.594 39.130 0.00 0.00 34.34 3.56
2425 4221 2.901839 AGATTTTCTGGCTGCAAATGGT 59.098 40.909 6.71 0.00 0.00 3.55
2570 4367 4.579869 AGCACAGTACCTTATGTTTCTGG 58.420 43.478 0.00 0.00 34.31 3.86
2733 4530 7.336931 TCCTGAAACACATTTATTAGAGAAGGC 59.663 37.037 0.00 0.00 0.00 4.35
2961 4766 5.063880 AGAGAAAACGGCAATAGTCTTGTT 58.936 37.500 0.00 0.00 0.00 2.83
2992 4797 4.202461 TGGACAAGAAACATTAGCTCTGGT 60.202 41.667 0.00 0.00 0.00 4.00
3199 5004 5.067023 GGGAGATTGTTATCCTCTGCAAAAG 59.933 44.000 0.00 0.00 35.80 2.27
3228 5033 7.016465 TCCTTTTTGAACCATTCATCTTCCAAT 59.984 33.333 0.00 0.00 39.84 3.16
3255 5060 5.414454 GTGCTCAGAATGTGGTGGTTTATAA 59.586 40.000 0.00 0.00 37.40 0.98
3375 5180 8.673711 CGAAACATAATATTTCTGGGAGAACAA 58.326 33.333 0.00 0.00 33.26 2.83
3629 5436 4.940046 AGAATGATACACCTTGCTTGTCAG 59.060 41.667 0.00 0.00 0.00 3.51
3639 5446 2.840038 TGACTGGCAGAATGATACACCT 59.160 45.455 23.66 0.00 39.69 4.00
3749 5626 7.140304 ACCATCCCCTATATATAAGGAAGGAC 58.860 42.308 25.54 0.00 37.62 3.85
3758 5635 5.842328 CCCGCTTTACCATCCCCTATATATA 59.158 44.000 0.00 0.00 0.00 0.86
3796 5673 0.506932 CTTGTGGTGTACGTTGCGAG 59.493 55.000 0.00 0.00 0.00 5.03
3899 5776 6.205464 TGCTCAAATTCTAACAACCTCTTGAG 59.795 38.462 0.00 0.00 40.81 3.02
3907 5784 6.017109 TCCTGAACTGCTCAAATTCTAACAAC 60.017 38.462 0.00 0.00 32.17 3.32
3970 5847 3.924114 TCCTGTCTTGTCACCTTTCAA 57.076 42.857 0.00 0.00 0.00 2.69
4025 5902 1.712018 CGGTATCGGCGACAGAGTCA 61.712 60.000 13.76 0.00 32.09 3.41
4061 5938 9.754382 CAGCAGAATTTTAGTGGCATTTATAAT 57.246 29.630 0.00 0.00 0.00 1.28
4065 5942 5.185635 AGCAGCAGAATTTTAGTGGCATTTA 59.814 36.000 0.00 0.00 0.00 1.40
4070 5947 3.181496 GGTAGCAGCAGAATTTTAGTGGC 60.181 47.826 0.00 0.00 0.00 5.01
4081 5958 3.923648 TCTAATTAGGGGTAGCAGCAGA 58.076 45.455 12.54 0.00 0.00 4.26
4093 5971 7.011857 GCTGGTTGAACAGATCTTCTAATTAGG 59.988 40.741 12.54 0.00 40.97 2.69
4101 5979 2.485814 GTGGCTGGTTGAACAGATCTTC 59.514 50.000 0.00 0.00 40.97 2.87
4108 5986 2.371841 AGATACAGTGGCTGGTTGAACA 59.628 45.455 0.00 0.00 35.51 3.18
4155 6082 2.736192 CCATTGCGGTGGCTTTTAAAAG 59.264 45.455 21.32 21.32 40.82 2.27
4179 6106 3.308438 CAAAAGTTGCTGCAGCCTTAT 57.692 42.857 34.64 16.56 41.18 1.73
4202 6131 1.467734 GCACTTGGCATGAGAACTCAG 59.532 52.381 7.45 4.37 43.61 3.35
4214 6143 3.861689 GCAAAGAATGATTAGCACTTGGC 59.138 43.478 0.00 0.00 45.30 4.52
4216 6145 5.100259 CCAGCAAAGAATGATTAGCACTTG 58.900 41.667 0.00 0.00 0.00 3.16
4269 6199 5.869649 TGCAATCATCAGGCTAGTACTTA 57.130 39.130 0.00 0.00 0.00 2.24
4270 6200 4.760530 TGCAATCATCAGGCTAGTACTT 57.239 40.909 0.00 0.00 0.00 2.24
4271 6201 4.970860 ATGCAATCATCAGGCTAGTACT 57.029 40.909 0.00 0.00 0.00 2.73
4272 6202 5.541845 TGTATGCAATCATCAGGCTAGTAC 58.458 41.667 0.00 0.00 34.22 2.73
4273 6203 5.806654 TGTATGCAATCATCAGGCTAGTA 57.193 39.130 0.00 0.00 34.22 1.82
4274 6204 4.694760 TGTATGCAATCATCAGGCTAGT 57.305 40.909 0.00 0.00 34.22 2.57
4275 6205 6.570672 AATTGTATGCAATCATCAGGCTAG 57.429 37.500 9.60 0.00 43.89 3.42
4276 6206 6.321945 ACAAATTGTATGCAATCATCAGGCTA 59.678 34.615 9.60 0.00 43.89 3.93
4277 6207 5.128171 ACAAATTGTATGCAATCATCAGGCT 59.872 36.000 9.60 0.00 43.89 4.58
4561 6509 4.042187 ACAGTTAGGAGCTGAAGGAACATT 59.958 41.667 0.00 0.00 37.40 2.71
4605 6553 5.278957 GCAAACAAACATGTTAGGACAGGAT 60.279 40.000 12.39 0.00 39.85 3.24
4777 6726 1.517242 AAAGAAGGCGCTGTCTTCAG 58.483 50.000 21.71 0.00 45.53 3.02
5001 6951 0.960861 GCGGGAACTAAAGCAAGGCT 60.961 55.000 0.00 0.00 42.56 4.58
5038 6988 6.734104 TGCATGCCCAATACAAAAATAAAC 57.266 33.333 16.68 0.00 0.00 2.01
5144 7849 5.398416 GTCTTAGCACAACAATTTTTCGACC 59.602 40.000 0.00 0.00 0.00 4.79
5148 7853 7.621102 CCAAAGTCTTAGCACAACAATTTTTC 58.379 34.615 0.00 0.00 0.00 2.29
5155 7860 1.953686 GGCCAAAGTCTTAGCACAACA 59.046 47.619 0.00 0.00 0.00 3.33
5158 7863 1.953686 GTTGGCCAAAGTCTTAGCACA 59.046 47.619 22.47 0.00 0.00 4.57
5180 7885 3.417101 AGCAACGGATGGTGTTTTGATA 58.583 40.909 0.00 0.00 38.62 2.15
5217 7922 4.993705 TTGTTTGTAGGTCCTCCTGATT 57.006 40.909 0.00 0.00 44.81 2.57
5274 8020 0.462047 GGTGTTGATCCCCAGCGTAG 60.462 60.000 0.00 0.00 0.00 3.51
5275 8021 1.195442 TGGTGTTGATCCCCAGCGTA 61.195 55.000 6.47 0.00 31.88 4.42
5276 8022 2.063015 TTGGTGTTGATCCCCAGCGT 62.063 55.000 6.47 0.00 31.88 5.07
5277 8023 1.303236 TTGGTGTTGATCCCCAGCG 60.303 57.895 6.47 0.00 31.88 5.18
5278 8024 1.250840 GGTTGGTGTTGATCCCCAGC 61.251 60.000 4.46 4.46 0.00 4.85
5279 8025 0.960364 CGGTTGGTGTTGATCCCCAG 60.960 60.000 0.00 0.00 0.00 4.45
5280 8026 1.074072 CGGTTGGTGTTGATCCCCA 59.926 57.895 0.00 0.00 0.00 4.96
5283 8029 0.958876 GGTCCGGTTGGTGTTGATCC 60.959 60.000 0.00 0.00 36.30 3.36
5291 8037 3.491598 CTGCTTGGGTCCGGTTGGT 62.492 63.158 0.00 0.00 36.30 3.67
5297 8043 1.153289 CCAGATCTGCTTGGGTCCG 60.153 63.158 17.76 0.00 0.00 4.79
5321 8067 2.024176 TAGGATGTGTGGAGGTGTGT 57.976 50.000 0.00 0.00 0.00 3.72
5333 8079 1.364171 CTAGCGCGGCTTAGGATGT 59.636 57.895 8.83 0.00 40.44 3.06
5393 8139 1.739371 GCAACAACGGCCTAGAGGTAG 60.739 57.143 0.00 0.00 37.57 3.18
5405 8151 4.025401 GGTGAGGCGGCAACAACG 62.025 66.667 13.08 0.00 0.00 4.10
5426 8172 0.250038 CAGTGGCATCTATGGGTCGG 60.250 60.000 0.00 0.00 0.00 4.79
5446 8192 2.007608 GGATGTTCTTCTTACCGTGGC 58.992 52.381 0.00 0.00 0.00 5.01
5447 8193 3.000727 GTGGATGTTCTTCTTACCGTGG 58.999 50.000 0.00 0.00 0.00 4.94
5448 8194 3.659786 TGTGGATGTTCTTCTTACCGTG 58.340 45.455 0.00 0.00 0.00 4.94
5449 8195 4.020573 TGATGTGGATGTTCTTCTTACCGT 60.021 41.667 0.00 0.00 0.00 4.83
5450 8196 4.503910 TGATGTGGATGTTCTTCTTACCG 58.496 43.478 0.00 0.00 0.00 4.02
5451 8197 6.655003 TCTTTGATGTGGATGTTCTTCTTACC 59.345 38.462 0.00 0.00 0.00 2.85
5452 8198 7.672983 TCTTTGATGTGGATGTTCTTCTTAC 57.327 36.000 0.00 0.00 0.00 2.34
5453 8199 9.605275 CTATCTTTGATGTGGATGTTCTTCTTA 57.395 33.333 0.00 0.00 0.00 2.10
5454 8200 8.324306 TCTATCTTTGATGTGGATGTTCTTCTT 58.676 33.333 0.00 0.00 0.00 2.52
5455 8201 7.768120 GTCTATCTTTGATGTGGATGTTCTTCT 59.232 37.037 0.00 0.00 0.00 2.85
5456 8202 7.011857 GGTCTATCTTTGATGTGGATGTTCTTC 59.988 40.741 0.00 0.00 0.00 2.87
5457 8203 6.825721 GGTCTATCTTTGATGTGGATGTTCTT 59.174 38.462 0.00 0.00 0.00 2.52
5458 8204 6.157645 AGGTCTATCTTTGATGTGGATGTTCT 59.842 38.462 0.00 0.00 0.00 3.01
5459 8205 6.259608 CAGGTCTATCTTTGATGTGGATGTTC 59.740 42.308 0.00 0.00 0.00 3.18
5460 8206 6.070021 TCAGGTCTATCTTTGATGTGGATGTT 60.070 38.462 0.00 0.00 0.00 2.71
5461 8207 5.426509 TCAGGTCTATCTTTGATGTGGATGT 59.573 40.000 0.00 0.00 0.00 3.06
5462 8208 5.922053 TCAGGTCTATCTTTGATGTGGATG 58.078 41.667 0.00 0.00 0.00 3.51
5463 8209 6.566079 TTCAGGTCTATCTTTGATGTGGAT 57.434 37.500 0.00 0.00 0.00 3.41
5464 8210 6.566079 ATTCAGGTCTATCTTTGATGTGGA 57.434 37.500 0.00 0.00 0.00 4.02
5465 8211 7.415989 CCAAATTCAGGTCTATCTTTGATGTGG 60.416 40.741 0.00 0.00 0.00 4.17
5466 8212 7.121759 ACCAAATTCAGGTCTATCTTTGATGTG 59.878 37.037 0.00 0.00 32.90 3.21
5467 8213 7.177878 ACCAAATTCAGGTCTATCTTTGATGT 58.822 34.615 0.00 0.00 32.90 3.06
5468 8214 7.636150 ACCAAATTCAGGTCTATCTTTGATG 57.364 36.000 0.00 0.00 32.90 3.07
5469 8215 8.655935 AAACCAAATTCAGGTCTATCTTTGAT 57.344 30.769 3.27 0.00 38.76 2.57
5470 8216 9.581289 TTAAACCAAATTCAGGTCTATCTTTGA 57.419 29.630 3.27 0.00 38.76 2.69
5471 8217 9.626045 GTTAAACCAAATTCAGGTCTATCTTTG 57.374 33.333 3.27 0.00 38.76 2.77
5472 8218 8.803235 GGTTAAACCAAATTCAGGTCTATCTTT 58.197 33.333 3.27 0.00 38.76 2.52
5473 8219 7.396339 GGGTTAAACCAAATTCAGGTCTATCTT 59.604 37.037 4.11 0.00 41.02 2.40
5474 8220 6.890268 GGGTTAAACCAAATTCAGGTCTATCT 59.110 38.462 4.11 0.00 41.02 1.98
5475 8221 6.661805 TGGGTTAAACCAAATTCAGGTCTATC 59.338 38.462 10.63 0.00 41.02 2.08
5476 8222 6.557568 TGGGTTAAACCAAATTCAGGTCTAT 58.442 36.000 10.63 0.00 41.02 1.98
5477 8223 5.954757 TGGGTTAAACCAAATTCAGGTCTA 58.045 37.500 10.63 0.00 41.02 2.59
5478 8224 4.810345 TGGGTTAAACCAAATTCAGGTCT 58.190 39.130 10.63 0.00 41.02 3.85
5479 8225 5.538849 TTGGGTTAAACCAAATTCAGGTC 57.461 39.130 22.85 0.00 46.95 3.85
5489 8235 2.306512 AGGCGATACTTGGGTTAAACCA 59.693 45.455 8.58 8.58 41.02 3.67
5490 8236 2.941064 GAGGCGATACTTGGGTTAAACC 59.059 50.000 1.28 1.28 37.60 3.27
5491 8237 2.941064 GGAGGCGATACTTGGGTTAAAC 59.059 50.000 0.00 0.00 0.00 2.01
5492 8238 2.572556 TGGAGGCGATACTTGGGTTAAA 59.427 45.455 0.00 0.00 0.00 1.52
5493 8239 2.189676 TGGAGGCGATACTTGGGTTAA 58.810 47.619 0.00 0.00 0.00 2.01
5494 8240 1.868713 TGGAGGCGATACTTGGGTTA 58.131 50.000 0.00 0.00 0.00 2.85
5495 8241 1.134098 CATGGAGGCGATACTTGGGTT 60.134 52.381 0.00 0.00 0.00 4.11
5496 8242 0.469917 CATGGAGGCGATACTTGGGT 59.530 55.000 0.00 0.00 0.00 4.51
5497 8243 0.758734 TCATGGAGGCGATACTTGGG 59.241 55.000 0.00 0.00 0.00 4.12
5498 8244 1.138859 TGTCATGGAGGCGATACTTGG 59.861 52.381 0.00 0.00 0.00 3.61
5499 8245 2.602257 TGTCATGGAGGCGATACTTG 57.398 50.000 0.00 0.00 0.00 3.16
5500 8246 3.134623 TGAATGTCATGGAGGCGATACTT 59.865 43.478 0.00 0.00 0.00 2.24
5501 8247 2.700371 TGAATGTCATGGAGGCGATACT 59.300 45.455 0.00 0.00 0.00 2.12
5502 8248 3.111853 TGAATGTCATGGAGGCGATAC 57.888 47.619 0.00 0.00 0.00 2.24
5504 8250 2.945080 ATGAATGTCATGGAGGCGAT 57.055 45.000 0.00 0.00 35.43 4.58
5513 8259 2.019249 CACTTCGGCCATGAATGTCAT 58.981 47.619 2.24 0.00 37.65 3.06
5514 8260 1.452110 CACTTCGGCCATGAATGTCA 58.548 50.000 2.24 0.00 0.00 3.58
5515 8261 0.099436 GCACTTCGGCCATGAATGTC 59.901 55.000 2.24 0.00 0.00 3.06
5516 8262 2.183409 GCACTTCGGCCATGAATGT 58.817 52.632 2.24 0.00 0.00 2.71
5525 8271 1.986575 GCTTCATGAGGCACTTCGGC 61.987 60.000 23.64 2.28 41.55 5.54
5526 8272 0.674581 TGCTTCATGAGGCACTTCGG 60.675 55.000 26.87 0.00 41.55 4.30
5527 8273 0.725686 CTGCTTCATGAGGCACTTCG 59.274 55.000 26.87 14.44 41.55 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.