Multiple sequence alignment - TraesCS4D01G314600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G314600 chr4D 100.000 2966 0 0 1 2966 480852331 480855296 0.000000e+00 5478.0
1 TraesCS4D01G314600 chr4D 91.875 160 8 5 2 160 505958680 505958525 5.560000e-53 219.0
2 TraesCS4D01G314600 chr4D 89.143 175 4 2 1 160 400826045 400825871 1.560000e-48 204.0
3 TraesCS4D01G314600 chr4D 100.000 39 0 0 3270 3308 480855600 480855638 4.580000e-09 73.1
4 TraesCS4D01G314600 chr5A 96.429 1064 35 3 1905 2966 662658548 662657486 0.000000e+00 1751.0
5 TraesCS4D01G314600 chr5A 93.200 1000 55 8 915 1912 662665040 662664052 0.000000e+00 1458.0
6 TraesCS4D01G314600 chr4B 85.115 1693 152 54 147 1801 608825263 608826893 0.000000e+00 1639.0
7 TraesCS4D01G314600 chr4B 94.168 583 34 0 1849 2431 608826894 608827476 0.000000e+00 889.0
8 TraesCS4D01G314600 chr4B 88.235 527 29 10 2425 2935 608827945 608828454 1.700000e-167 599.0
9 TraesCS4D01G314600 chr4B 84.568 162 19 2 4 159 2819355 2819194 4.420000e-34 156.0
10 TraesCS4D01G314600 chr4B 83.951 162 20 2 4 159 2874359 2874198 2.060000e-32 150.0
11 TraesCS4D01G314600 chr7D 79.985 1319 204 32 990 2287 97952662 97953941 0.000000e+00 918.0
12 TraesCS4D01G314600 chr7B 79.909 1319 205 35 990 2287 52615848 52617127 0.000000e+00 913.0
13 TraesCS4D01G314600 chr6D 95.000 160 6 2 1 159 134675597 134675439 1.970000e-62 250.0
14 TraesCS4D01G314600 chr6D 90.230 174 2 2 1 159 28705450 28705623 2.590000e-51 213.0
15 TraesCS4D01G314600 chr6D 90.230 174 2 2 1 159 78774483 78774310 2.590000e-51 213.0
16 TraesCS4D01G314600 chr6D 88.000 175 6 2 1 160 5746411 5746237 3.370000e-45 193.0
17 TraesCS4D01G314600 chr5D 90.805 174 1 2 1 159 540262482 540262655 5.560000e-53 219.0
18 TraesCS4D01G314600 chr5D 89.143 175 4 2 1 160 486933343 486933169 1.560000e-48 204.0
19 TraesCS4D01G314600 chr5D 79.545 132 21 5 1030 1158 34803203 34803331 4.550000e-14 89.8
20 TraesCS4D01G314600 chr2D 90.230 174 2 2 1 159 450449277 450449450 2.590000e-51 213.0
21 TraesCS4D01G314600 chr4A 87.931 174 6 10 1 159 222145388 222145215 1.210000e-44 191.0
22 TraesCS4D01G314600 chr1A 86.782 174 8 2 1 159 534325766 534325939 2.620000e-41 180.0
23 TraesCS4D01G314600 chr1A 88.372 129 15 0 1030 1158 493542784 493542656 4.420000e-34 156.0
24 TraesCS4D01G314600 chr1A 75.676 185 37 8 1321 1501 493542481 493542301 5.880000e-13 86.1
25 TraesCS4D01G314600 chrUn 85.057 174 11 7 1 159 31032486 31032659 2.640000e-36 163.0
26 TraesCS4D01G314600 chr1D 74.359 312 69 9 1980 2287 462488779 462489083 4.480000e-24 122.0
27 TraesCS4D01G314600 chr1D 83.065 124 20 1 1036 1158 391679230 391679353 9.700000e-21 111.0
28 TraesCS4D01G314600 chr1B 87.000 100 12 1 1030 1128 531012813 531012714 9.700000e-21 111.0
29 TraesCS4D01G314600 chr1B 75.424 236 55 2 2052 2287 637622865 637623097 9.700000e-21 111.0
30 TraesCS4D01G314600 chr1B 86.458 96 13 0 1034 1129 559332746 559332841 4.510000e-19 106.0
31 TraesCS4D01G314600 chr1B 89.831 59 4 2 2857 2914 376052762 376052705 1.270000e-09 75.0
32 TraesCS4D01G314600 chr3B 78.075 187 29 11 1321 1501 638312619 638312439 1.260000e-19 108.0
33 TraesCS4D01G314600 chr3A 77.540 187 30 11 1321 1501 621847356 621847176 5.840000e-18 102.0
34 TraesCS4D01G314600 chr5B 76.216 185 36 7 1321 1501 26306536 26306356 1.260000e-14 91.6
35 TraesCS4D01G314600 chr6A 100.000 31 0 0 2857 2887 10386772 10386802 1.280000e-04 58.4
36 TraesCS4D01G314600 chr2B 84.746 59 8 1 2856 2914 797716939 797716882 1.280000e-04 58.4
37 TraesCS4D01G314600 chr7A 96.774 31 1 0 2860 2890 97257742 97257712 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G314600 chr4D 480852331 480855638 3307 False 2775.550000 5478 100.000000 1 3308 2 chr4D.!!$F1 3307
1 TraesCS4D01G314600 chr5A 662657486 662658548 1062 True 1751.000000 1751 96.429000 1905 2966 1 chr5A.!!$R1 1061
2 TraesCS4D01G314600 chr5A 662664052 662665040 988 True 1458.000000 1458 93.200000 915 1912 1 chr5A.!!$R2 997
3 TraesCS4D01G314600 chr4B 608825263 608828454 3191 False 1042.333333 1639 89.172667 147 2935 3 chr4B.!!$F1 2788
4 TraesCS4D01G314600 chr7D 97952662 97953941 1279 False 918.000000 918 79.985000 990 2287 1 chr7D.!!$F1 1297
5 TraesCS4D01G314600 chr7B 52615848 52617127 1279 False 913.000000 913 79.909000 990 2287 1 chr7B.!!$F1 1297

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 207 0.179004 TGGACAAACCGTGCTCCATT 60.179 50.0 0.0 0.0 42.61 3.16 F
625 626 0.179153 TTCATCTCGTCTCGCTGCTG 60.179 55.0 0.0 0.0 0.00 4.41 F
857 878 0.245266 TGCGTGCGGAGAAATAGTCA 59.755 50.0 0.0 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1558 1599 0.037605 GGAGAACCACCACCTACGTG 60.038 60.000 0.00 0.0 36.58 4.49 R
1638 1679 1.089920 CATCACTAACAGCAGCACCC 58.910 55.000 0.00 0.0 0.00 4.61 R
2353 2409 1.202348 GGGCCTTCCTCGAACAAAATG 59.798 52.381 0.84 0.0 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.002006 AGGGACTTTGACAGCCCA 57.998 55.556 0.00 0.00 39.93 5.36
29 30 2.240510 AGGGACTTTGACAGCCCAA 58.759 52.632 0.00 0.00 39.93 4.12
30 31 0.555769 AGGGACTTTGACAGCCCAAA 59.444 50.000 0.00 0.00 39.93 3.28
31 32 0.673985 GGGACTTTGACAGCCCAAAC 59.326 55.000 0.00 0.00 38.25 2.93
32 33 1.398692 GGACTTTGACAGCCCAAACA 58.601 50.000 0.00 0.00 33.07 2.83
33 34 1.963515 GGACTTTGACAGCCCAAACAT 59.036 47.619 0.00 0.00 33.07 2.71
34 35 2.288395 GGACTTTGACAGCCCAAACATG 60.288 50.000 0.00 0.00 33.07 3.21
35 36 2.362077 GACTTTGACAGCCCAAACATGT 59.638 45.455 0.00 0.00 33.07 3.21
36 37 2.765699 ACTTTGACAGCCCAAACATGTT 59.234 40.909 4.92 4.92 33.07 2.71
37 38 3.197549 ACTTTGACAGCCCAAACATGTTT 59.802 39.130 18.13 18.13 33.07 2.83
38 39 2.886862 TGACAGCCCAAACATGTTTG 57.113 45.000 34.51 34.51 46.93 2.93
51 52 5.880054 AACATGTTTGGAACTAGGAATCG 57.120 39.130 4.92 0.00 0.00 3.34
52 53 5.160607 ACATGTTTGGAACTAGGAATCGA 57.839 39.130 0.00 0.00 0.00 3.59
53 54 5.178797 ACATGTTTGGAACTAGGAATCGAG 58.821 41.667 0.00 0.00 0.00 4.04
54 55 3.596214 TGTTTGGAACTAGGAATCGAGC 58.404 45.455 0.00 0.00 0.00 5.03
55 56 3.260884 TGTTTGGAACTAGGAATCGAGCT 59.739 43.478 0.00 0.00 0.00 4.09
56 57 4.254492 GTTTGGAACTAGGAATCGAGCTT 58.746 43.478 0.00 0.00 0.00 3.74
57 58 3.526931 TGGAACTAGGAATCGAGCTTG 57.473 47.619 0.00 0.00 0.00 4.01
58 59 3.096852 TGGAACTAGGAATCGAGCTTGA 58.903 45.455 6.01 6.01 0.00 3.02
59 60 3.513912 TGGAACTAGGAATCGAGCTTGAA 59.486 43.478 7.99 0.00 0.00 2.69
60 61 4.162320 TGGAACTAGGAATCGAGCTTGAAT 59.838 41.667 7.99 0.00 0.00 2.57
61 62 5.119694 GGAACTAGGAATCGAGCTTGAATT 58.880 41.667 7.99 3.17 0.00 2.17
62 63 5.007136 GGAACTAGGAATCGAGCTTGAATTG 59.993 44.000 7.99 0.00 0.00 2.32
63 64 5.344743 ACTAGGAATCGAGCTTGAATTGA 57.655 39.130 7.99 0.00 0.00 2.57
64 65 5.923204 ACTAGGAATCGAGCTTGAATTGAT 58.077 37.500 7.99 0.00 0.00 2.57
65 66 7.055667 ACTAGGAATCGAGCTTGAATTGATA 57.944 36.000 7.99 0.00 0.00 2.15
66 67 7.500992 ACTAGGAATCGAGCTTGAATTGATAA 58.499 34.615 7.99 0.00 0.00 1.75
67 68 6.610741 AGGAATCGAGCTTGAATTGATAAC 57.389 37.500 7.99 0.00 0.00 1.89
68 69 6.115446 AGGAATCGAGCTTGAATTGATAACA 58.885 36.000 7.99 0.00 0.00 2.41
69 70 6.769822 AGGAATCGAGCTTGAATTGATAACAT 59.230 34.615 7.99 0.00 0.00 2.71
70 71 7.041508 AGGAATCGAGCTTGAATTGATAACATC 60.042 37.037 7.99 0.00 0.00 3.06
71 72 7.041508 GGAATCGAGCTTGAATTGATAACATCT 60.042 37.037 7.99 0.00 0.00 2.90
72 73 8.893219 AATCGAGCTTGAATTGATAACATCTA 57.107 30.769 7.99 0.00 0.00 1.98
73 74 8.893219 ATCGAGCTTGAATTGATAACATCTAA 57.107 30.769 7.99 0.00 0.00 2.10
74 75 8.131455 TCGAGCTTGAATTGATAACATCTAAC 57.869 34.615 0.00 0.00 0.00 2.34
75 76 7.981789 TCGAGCTTGAATTGATAACATCTAACT 59.018 33.333 0.00 0.00 0.00 2.24
76 77 8.060679 CGAGCTTGAATTGATAACATCTAACTG 58.939 37.037 0.00 0.00 0.00 3.16
77 78 8.798859 AGCTTGAATTGATAACATCTAACTGT 57.201 30.769 0.00 0.00 0.00 3.55
78 79 9.890629 AGCTTGAATTGATAACATCTAACTGTA 57.109 29.630 0.00 0.00 0.00 2.74
91 92 7.783042 ACATCTAACTGTAAATACTCCAGACC 58.217 38.462 0.00 0.00 0.00 3.85
92 93 7.620094 ACATCTAACTGTAAATACTCCAGACCT 59.380 37.037 0.00 0.00 0.00 3.85
93 94 9.132923 CATCTAACTGTAAATACTCCAGACCTA 57.867 37.037 0.00 0.00 0.00 3.08
94 95 8.749026 TCTAACTGTAAATACTCCAGACCTAG 57.251 38.462 0.00 0.00 0.00 3.02
95 96 8.334734 TCTAACTGTAAATACTCCAGACCTAGT 58.665 37.037 0.00 0.00 0.00 2.57
96 97 9.624373 CTAACTGTAAATACTCCAGACCTAGTA 57.376 37.037 0.00 0.00 32.98 1.82
97 98 8.890410 AACTGTAAATACTCCAGACCTAGTAA 57.110 34.615 0.00 0.00 32.24 2.24
98 99 8.291191 ACTGTAAATACTCCAGACCTAGTAAC 57.709 38.462 0.00 0.00 32.24 2.50
99 100 8.114743 ACTGTAAATACTCCAGACCTAGTAACT 58.885 37.037 0.00 0.00 32.24 2.24
100 101 8.890410 TGTAAATACTCCAGACCTAGTAACTT 57.110 34.615 0.00 0.00 32.24 2.66
101 102 9.317827 TGTAAATACTCCAGACCTAGTAACTTT 57.682 33.333 0.00 0.00 32.24 2.66
102 103 9.800433 GTAAATACTCCAGACCTAGTAACTTTC 57.200 37.037 0.00 0.00 32.24 2.62
103 104 8.431910 AAATACTCCAGACCTAGTAACTTTCA 57.568 34.615 0.00 0.00 32.24 2.69
104 105 5.986501 ACTCCAGACCTAGTAACTTTCAG 57.013 43.478 0.00 0.00 0.00 3.02
105 106 4.221041 ACTCCAGACCTAGTAACTTTCAGC 59.779 45.833 0.00 0.00 0.00 4.26
106 107 3.192844 TCCAGACCTAGTAACTTTCAGCG 59.807 47.826 0.00 0.00 0.00 5.18
107 108 3.056749 CCAGACCTAGTAACTTTCAGCGT 60.057 47.826 0.00 0.00 0.00 5.07
108 109 4.157289 CCAGACCTAGTAACTTTCAGCGTA 59.843 45.833 0.00 0.00 0.00 4.42
109 110 5.336213 CCAGACCTAGTAACTTTCAGCGTAA 60.336 44.000 0.00 0.00 0.00 3.18
110 111 6.331061 CAGACCTAGTAACTTTCAGCGTAAT 58.669 40.000 0.00 0.00 0.00 1.89
111 112 6.812160 CAGACCTAGTAACTTTCAGCGTAATT 59.188 38.462 0.00 0.00 0.00 1.40
112 113 7.009357 CAGACCTAGTAACTTTCAGCGTAATTC 59.991 40.741 0.00 0.00 0.00 2.17
113 114 6.694447 ACCTAGTAACTTTCAGCGTAATTCA 58.306 36.000 0.00 0.00 0.00 2.57
114 115 7.328737 ACCTAGTAACTTTCAGCGTAATTCAT 58.671 34.615 0.00 0.00 0.00 2.57
115 116 7.491696 ACCTAGTAACTTTCAGCGTAATTCATC 59.508 37.037 0.00 0.00 0.00 2.92
116 117 6.332504 AGTAACTTTCAGCGTAATTCATCG 57.667 37.500 0.00 0.00 0.00 3.84
117 118 4.600012 AACTTTCAGCGTAATTCATCGG 57.400 40.909 0.00 0.00 0.00 4.18
118 119 2.936498 ACTTTCAGCGTAATTCATCGGG 59.064 45.455 0.00 0.00 0.00 5.14
119 120 2.684001 TTCAGCGTAATTCATCGGGT 57.316 45.000 0.00 0.00 0.00 5.28
120 121 2.684001 TCAGCGTAATTCATCGGGTT 57.316 45.000 0.00 0.00 0.00 4.11
121 122 2.276201 TCAGCGTAATTCATCGGGTTG 58.724 47.619 0.00 0.00 0.00 3.77
122 123 2.006888 CAGCGTAATTCATCGGGTTGT 58.993 47.619 0.00 0.00 0.00 3.32
123 124 2.418628 CAGCGTAATTCATCGGGTTGTT 59.581 45.455 0.00 0.00 0.00 2.83
124 125 2.418628 AGCGTAATTCATCGGGTTGTTG 59.581 45.455 0.00 0.00 0.00 3.33
125 126 2.417239 GCGTAATTCATCGGGTTGTTGA 59.583 45.455 0.00 0.00 0.00 3.18
126 127 3.485216 GCGTAATTCATCGGGTTGTTGAG 60.485 47.826 0.00 0.00 0.00 3.02
127 128 3.930229 CGTAATTCATCGGGTTGTTGAGA 59.070 43.478 0.00 0.00 0.00 3.27
128 129 4.390603 CGTAATTCATCGGGTTGTTGAGAA 59.609 41.667 0.00 0.00 0.00 2.87
129 130 5.106869 CGTAATTCATCGGGTTGTTGAGAAA 60.107 40.000 0.00 0.00 0.00 2.52
130 131 5.376854 AATTCATCGGGTTGTTGAGAAAG 57.623 39.130 0.00 0.00 0.00 2.62
131 132 2.151202 TCATCGGGTTGTTGAGAAAGC 58.849 47.619 0.00 0.00 0.00 3.51
132 133 2.154462 CATCGGGTTGTTGAGAAAGCT 58.846 47.619 0.00 0.00 0.00 3.74
133 134 1.593196 TCGGGTTGTTGAGAAAGCTG 58.407 50.000 0.00 0.00 33.62 4.24
134 135 1.140052 TCGGGTTGTTGAGAAAGCTGA 59.860 47.619 0.00 0.00 37.91 4.26
135 136 1.946768 CGGGTTGTTGAGAAAGCTGAA 59.053 47.619 0.00 0.00 34.09 3.02
136 137 2.287009 CGGGTTGTTGAGAAAGCTGAAC 60.287 50.000 0.00 0.00 38.52 3.18
137 138 2.034685 GGGTTGTTGAGAAAGCTGAACC 59.965 50.000 0.00 0.00 37.43 3.62
138 139 2.952310 GGTTGTTGAGAAAGCTGAACCT 59.048 45.455 0.00 0.00 37.43 3.50
139 140 3.003793 GGTTGTTGAGAAAGCTGAACCTC 59.996 47.826 0.00 0.00 37.43 3.85
140 141 2.851195 TGTTGAGAAAGCTGAACCTCC 58.149 47.619 0.00 0.00 37.43 4.30
141 142 2.172505 TGTTGAGAAAGCTGAACCTCCA 59.827 45.455 0.00 0.00 37.43 3.86
142 143 3.181440 TGTTGAGAAAGCTGAACCTCCAT 60.181 43.478 0.00 0.00 37.43 3.41
143 144 3.340814 TGAGAAAGCTGAACCTCCATC 57.659 47.619 0.00 0.00 0.00 3.51
144 145 2.639347 TGAGAAAGCTGAACCTCCATCA 59.361 45.455 0.00 0.00 0.00 3.07
145 146 3.269178 GAGAAAGCTGAACCTCCATCAG 58.731 50.000 0.00 0.00 45.65 2.90
146 147 2.641815 AGAAAGCTGAACCTCCATCAGT 59.358 45.455 5.54 0.00 44.88 3.41
147 148 2.777832 AAGCTGAACCTCCATCAGTC 57.222 50.000 5.54 0.00 44.88 3.51
148 149 1.949799 AGCTGAACCTCCATCAGTCT 58.050 50.000 5.54 1.28 44.88 3.24
149 150 3.107402 AGCTGAACCTCCATCAGTCTA 57.893 47.619 5.54 0.00 44.88 2.59
150 151 2.763448 AGCTGAACCTCCATCAGTCTAC 59.237 50.000 5.54 0.00 44.88 2.59
151 152 2.763448 GCTGAACCTCCATCAGTCTACT 59.237 50.000 5.54 0.00 44.88 2.57
152 153 3.196685 GCTGAACCTCCATCAGTCTACTT 59.803 47.826 5.54 0.00 44.88 2.24
153 154 4.402793 GCTGAACCTCCATCAGTCTACTTA 59.597 45.833 5.54 0.00 44.88 2.24
154 155 5.680151 GCTGAACCTCCATCAGTCTACTTAC 60.680 48.000 5.54 0.00 44.88 2.34
155 156 5.580998 TGAACCTCCATCAGTCTACTTACT 58.419 41.667 0.00 0.00 0.00 2.24
179 180 3.569690 GCCGTGGTTTATCCGCCG 61.570 66.667 0.00 0.00 43.26 6.46
180 181 2.893404 CCGTGGTTTATCCGCCGG 60.893 66.667 0.00 0.00 43.26 6.13
181 182 2.125431 CGTGGTTTATCCGCCGGT 60.125 61.111 1.63 0.00 43.26 5.28
182 183 2.457778 CGTGGTTTATCCGCCGGTG 61.458 63.158 8.42 8.42 43.26 4.94
183 184 1.376295 GTGGTTTATCCGCCGGTGT 60.376 57.895 15.14 0.00 40.57 4.16
196 197 1.358759 CGGTGTTGCTGGACAAACC 59.641 57.895 0.00 0.00 40.82 3.27
206 207 0.179004 TGGACAAACCGTGCTCCATT 60.179 50.000 0.00 0.00 42.61 3.16
207 208 0.521735 GGACAAACCGTGCTCCATTC 59.478 55.000 0.00 0.00 32.16 2.67
209 210 0.534203 ACAAACCGTGCTCCATTCGT 60.534 50.000 0.00 0.00 0.00 3.85
214 215 2.125512 GTGCTCCATTCGTCGGCT 60.126 61.111 0.00 0.00 0.00 5.52
232 233 0.530211 CTCTTCTCGCAGGCATCCAG 60.530 60.000 0.00 0.00 0.00 3.86
236 237 3.002583 TCGCAGGCATCCAGGTCA 61.003 61.111 0.00 0.00 0.00 4.02
238 239 2.439156 GCAGGCATCCAGGTCACC 60.439 66.667 0.00 0.00 0.00 4.02
239 240 3.080641 CAGGCATCCAGGTCACCA 58.919 61.111 0.00 0.00 0.00 4.17
254 255 2.034878 TCACCATCCTCTTCCATCTCG 58.965 52.381 0.00 0.00 0.00 4.04
260 261 1.732917 CTCTTCCATCTCGCTCGCT 59.267 57.895 0.00 0.00 0.00 4.93
261 262 0.594540 CTCTTCCATCTCGCTCGCTG 60.595 60.000 0.00 0.00 0.00 5.18
303 304 7.310052 GCTAGGGATCCTTTTGAACAGAAAAAT 60.310 37.037 12.58 0.00 34.61 1.82
305 306 6.327365 AGGGATCCTTTTGAACAGAAAAATGT 59.673 34.615 12.58 0.00 33.96 2.71
306 307 6.992123 GGGATCCTTTTGAACAGAAAAATGTT 59.008 34.615 12.58 0.00 45.89 2.71
345 346 4.223255 AGAAAAACCAAACCCGGAAGAAAA 59.777 37.500 0.73 0.00 0.00 2.29
376 377 4.682787 ACCCGAAAAAGCAAGAGAAAAAG 58.317 39.130 0.00 0.00 0.00 2.27
377 378 4.401202 ACCCGAAAAAGCAAGAGAAAAAGA 59.599 37.500 0.00 0.00 0.00 2.52
378 379 5.105513 ACCCGAAAAAGCAAGAGAAAAAGAA 60.106 36.000 0.00 0.00 0.00 2.52
379 380 5.810074 CCCGAAAAAGCAAGAGAAAAAGAAA 59.190 36.000 0.00 0.00 0.00 2.52
380 381 6.019559 CCCGAAAAAGCAAGAGAAAAAGAAAG 60.020 38.462 0.00 0.00 0.00 2.62
381 382 6.019559 CCGAAAAAGCAAGAGAAAAAGAAAGG 60.020 38.462 0.00 0.00 0.00 3.11
382 383 6.751888 CGAAAAAGCAAGAGAAAAAGAAAGGA 59.248 34.615 0.00 0.00 0.00 3.36
383 384 7.275560 CGAAAAAGCAAGAGAAAAAGAAAGGAA 59.724 33.333 0.00 0.00 0.00 3.36
384 385 8.484641 AAAAAGCAAGAGAAAAAGAAAGGAAG 57.515 30.769 0.00 0.00 0.00 3.46
385 386 7.410120 AAAGCAAGAGAAAAAGAAAGGAAGA 57.590 32.000 0.00 0.00 0.00 2.87
386 387 7.410120 AAGCAAGAGAAAAAGAAAGGAAGAA 57.590 32.000 0.00 0.00 0.00 2.52
387 388 7.410120 AGCAAGAGAAAAAGAAAGGAAGAAA 57.590 32.000 0.00 0.00 0.00 2.52
388 389 7.840931 AGCAAGAGAAAAAGAAAGGAAGAAAA 58.159 30.769 0.00 0.00 0.00 2.29
389 390 8.314021 AGCAAGAGAAAAAGAAAGGAAGAAAAA 58.686 29.630 0.00 0.00 0.00 1.94
413 414 1.265095 CGAAAAAGAGAAGCAGCAGCA 59.735 47.619 3.17 0.00 45.49 4.41
414 415 2.664971 CGAAAAAGAGAAGCAGCAGCAG 60.665 50.000 3.17 0.00 45.49 4.24
415 416 0.597072 AAAAGAGAAGCAGCAGCAGC 59.403 50.000 3.17 0.46 45.49 5.25
426 427 4.093952 CAGCAGCGCAAGGAACCG 62.094 66.667 11.47 0.00 38.28 4.44
485 486 0.733150 GCCTCAACTATTTGACGCCC 59.267 55.000 5.77 0.00 37.63 6.13
486 487 1.006832 CCTCAACTATTTGACGCCCG 58.993 55.000 0.00 0.00 36.79 6.13
488 489 2.073816 CTCAACTATTTGACGCCCGTT 58.926 47.619 0.00 0.00 36.79 4.44
489 490 2.482721 CTCAACTATTTGACGCCCGTTT 59.517 45.455 0.00 0.00 36.79 3.60
491 492 2.172851 ACTATTTGACGCCCGTTTGA 57.827 45.000 0.00 0.00 0.00 2.69
492 493 1.802365 ACTATTTGACGCCCGTTTGAC 59.198 47.619 0.00 0.00 0.00 3.18
493 494 0.791422 TATTTGACGCCCGTTTGACG 59.209 50.000 0.00 0.00 42.11 4.35
498 499 4.676586 CGCCCGTTTGACGCCAAC 62.677 66.667 0.00 0.00 40.91 3.77
500 501 4.020378 CCCGTTTGACGCCAACGG 62.020 66.667 20.81 20.81 46.04 4.44
501 502 4.020378 CCGTTTGACGCCAACGGG 62.020 66.667 20.27 5.70 46.04 5.28
514 515 0.725117 CAACGGGCGTCAAATAGGAC 59.275 55.000 0.00 0.00 34.42 3.85
520 521 2.199236 GGCGTCAAATAGGACTTACCG 58.801 52.381 0.00 0.00 44.74 4.02
560 561 3.580731 GCTAGGAACTCTTGTCTGACAC 58.419 50.000 10.56 0.00 41.75 3.67
576 577 2.116772 ACGAAGGAGGGGTGTCGA 59.883 61.111 0.00 0.00 36.98 4.20
577 578 1.305046 ACGAAGGAGGGGTGTCGAT 60.305 57.895 0.00 0.00 36.98 3.59
578 579 1.321074 ACGAAGGAGGGGTGTCGATC 61.321 60.000 0.00 0.00 36.98 3.69
579 580 1.437986 GAAGGAGGGGTGTCGATCG 59.562 63.158 9.36 9.36 0.00 3.69
580 581 1.305046 AAGGAGGGGTGTCGATCGT 60.305 57.895 15.94 0.00 0.00 3.73
581 582 1.321074 AAGGAGGGGTGTCGATCGTC 61.321 60.000 15.94 10.48 0.00 4.20
582 583 2.783288 GGAGGGGTGTCGATCGTCC 61.783 68.421 15.94 15.14 0.00 4.79
583 584 3.122250 GAGGGGTGTCGATCGTCCG 62.122 68.421 15.94 0.00 0.00 4.79
584 585 3.446570 GGGGTGTCGATCGTCCGT 61.447 66.667 15.94 0.00 0.00 4.69
585 586 2.202570 GGGTGTCGATCGTCCGTG 60.203 66.667 15.94 0.00 0.00 4.94
586 587 2.564975 GGTGTCGATCGTCCGTGT 59.435 61.111 15.94 0.00 0.00 4.49
587 588 1.513586 GGTGTCGATCGTCCGTGTC 60.514 63.158 15.94 0.50 0.00 3.67
588 589 1.862147 GTGTCGATCGTCCGTGTCG 60.862 63.158 15.94 9.65 36.75 4.35
591 592 2.503158 CGATCGTCCGTGTCGCAA 60.503 61.111 7.03 0.00 0.00 4.85
592 593 2.084101 CGATCGTCCGTGTCGCAAA 61.084 57.895 7.03 0.00 0.00 3.68
600 601 1.730064 TCCGTGTCGCAAAAGCTAATC 59.270 47.619 0.00 0.00 0.00 1.75
601 602 1.463056 CCGTGTCGCAAAAGCTAATCA 59.537 47.619 0.00 0.00 0.00 2.57
604 605 2.484264 GTGTCGCAAAAGCTAATCACCT 59.516 45.455 0.00 0.00 0.00 4.00
609 610 3.058293 CGCAAAAGCTAATCACCTGTTCA 60.058 43.478 0.00 0.00 0.00 3.18
613 614 6.549952 CAAAAGCTAATCACCTGTTCATCTC 58.450 40.000 0.00 0.00 0.00 2.75
614 615 4.052159 AGCTAATCACCTGTTCATCTCG 57.948 45.455 0.00 0.00 0.00 4.04
615 616 3.449018 AGCTAATCACCTGTTCATCTCGT 59.551 43.478 0.00 0.00 0.00 4.18
616 617 3.799420 GCTAATCACCTGTTCATCTCGTC 59.201 47.826 0.00 0.00 0.00 4.20
617 618 4.440802 GCTAATCACCTGTTCATCTCGTCT 60.441 45.833 0.00 0.00 0.00 4.18
625 626 0.179153 TTCATCTCGTCTCGCTGCTG 60.179 55.000 0.00 0.00 0.00 4.41
631 632 3.260483 GTCTCGCTGCTGCCATCG 61.260 66.667 10.24 0.00 35.36 3.84
638 639 1.817099 CTGCTGCCATCGTCTTCCC 60.817 63.158 0.00 0.00 0.00 3.97
642 643 4.547367 GCCATCGTCTTCCCCCGG 62.547 72.222 0.00 0.00 0.00 5.73
658 659 1.056869 CCGGCAAAATTTTCCGTTCG 58.943 50.000 25.97 15.40 41.46 3.95
662 663 2.544069 GGCAAAATTTTCCGTTCGTCCA 60.544 45.455 0.00 0.00 0.00 4.02
664 665 3.060807 GCAAAATTTTCCGTTCGTCCAAC 60.061 43.478 0.00 0.00 0.00 3.77
666 667 3.891056 AATTTTCCGTTCGTCCAACTC 57.109 42.857 0.00 0.00 32.09 3.01
667 668 1.585297 TTTTCCGTTCGTCCAACTCC 58.415 50.000 0.00 0.00 32.09 3.85
668 669 0.464870 TTTCCGTTCGTCCAACTCCA 59.535 50.000 0.00 0.00 32.09 3.86
669 670 0.682852 TTCCGTTCGTCCAACTCCAT 59.317 50.000 0.00 0.00 32.09 3.41
670 671 0.245539 TCCGTTCGTCCAACTCCATC 59.754 55.000 0.00 0.00 32.09 3.51
671 672 0.739813 CCGTTCGTCCAACTCCATCC 60.740 60.000 0.00 0.00 32.09 3.51
672 673 0.739813 CGTTCGTCCAACTCCATCCC 60.740 60.000 0.00 0.00 32.09 3.85
675 676 0.544357 TCGTCCAACTCCATCCCAGT 60.544 55.000 0.00 0.00 0.00 4.00
678 679 1.065854 GTCCAACTCCATCCCAGTCAG 60.066 57.143 0.00 0.00 0.00 3.51
681 682 1.905215 CAACTCCATCCCAGTCAGAGT 59.095 52.381 0.00 0.00 39.42 3.24
711 712 1.847506 TCTTTGCCCTCCTGCTCCA 60.848 57.895 0.00 0.00 0.00 3.86
712 713 1.378250 CTTTGCCCTCCTGCTCCAG 60.378 63.158 0.00 0.00 0.00 3.86
745 749 1.065701 CGAGATTGAAGGTCGATCCGT 59.934 52.381 0.00 0.00 37.89 4.69
748 752 4.556898 CGAGATTGAAGGTCGATCCGTAAT 60.557 45.833 0.00 0.00 37.89 1.89
761 765 1.881973 TCCGTAATCGATTCCTACCGG 59.118 52.381 15.25 17.65 39.71 5.28
788 794 1.366679 GTACGGAAGCAAACCCTAGC 58.633 55.000 0.00 0.00 0.00 3.42
789 795 0.251073 TACGGAAGCAAACCCTAGCC 59.749 55.000 0.00 0.00 0.00 3.93
790 796 1.749258 CGGAAGCAAACCCTAGCCC 60.749 63.158 0.00 0.00 0.00 5.19
791 797 1.749258 GGAAGCAAACCCTAGCCCG 60.749 63.158 0.00 0.00 0.00 6.13
792 798 1.002502 GAAGCAAACCCTAGCCCGT 60.003 57.895 0.00 0.00 0.00 5.28
793 799 0.608308 GAAGCAAACCCTAGCCCGTT 60.608 55.000 0.00 0.00 0.00 4.44
794 800 0.608308 AAGCAAACCCTAGCCCGTTC 60.608 55.000 0.00 0.00 0.00 3.95
795 801 2.396157 GCAAACCCTAGCCCGTTCG 61.396 63.158 0.00 0.00 0.00 3.95
796 802 2.046604 AAACCCTAGCCCGTTCGC 60.047 61.111 0.00 0.00 0.00 4.70
797 803 2.886134 AAACCCTAGCCCGTTCGCA 61.886 57.895 0.00 0.00 0.00 5.10
798 804 2.193087 AAACCCTAGCCCGTTCGCAT 62.193 55.000 0.00 0.00 0.00 4.73
799 805 2.280186 CCCTAGCCCGTTCGCATC 60.280 66.667 0.00 0.00 0.00 3.91
800 806 2.499205 CCTAGCCCGTTCGCATCA 59.501 61.111 0.00 0.00 0.00 3.07
801 807 1.153449 CCTAGCCCGTTCGCATCAA 60.153 57.895 0.00 0.00 0.00 2.57
802 808 1.429148 CCTAGCCCGTTCGCATCAAC 61.429 60.000 0.00 0.00 0.00 3.18
803 809 0.460284 CTAGCCCGTTCGCATCAACT 60.460 55.000 0.00 0.00 0.00 3.16
804 810 0.818938 TAGCCCGTTCGCATCAACTA 59.181 50.000 0.00 0.00 0.00 2.24
816 822 3.804325 CGCATCAACTACCAGATCGATTT 59.196 43.478 0.00 0.00 0.00 2.17
818 824 4.553547 GCATCAACTACCAGATCGATTTGC 60.554 45.833 10.36 0.00 0.00 3.68
820 826 4.183865 TCAACTACCAGATCGATTTGCAG 58.816 43.478 10.36 11.19 0.00 4.41
825 841 3.265791 ACCAGATCGATTTGCAGAAGTC 58.734 45.455 10.36 0.00 0.00 3.01
835 851 5.620654 CGATTTGCAGAAGTCCATGATTGTT 60.621 40.000 0.00 0.00 0.00 2.83
837 853 5.627499 TTGCAGAAGTCCATGATTGTTAC 57.373 39.130 0.00 0.00 0.00 2.50
838 854 4.910195 TGCAGAAGTCCATGATTGTTACT 58.090 39.130 0.00 0.00 0.00 2.24
839 855 4.696877 TGCAGAAGTCCATGATTGTTACTG 59.303 41.667 0.00 0.00 0.00 2.74
841 857 3.935203 AGAAGTCCATGATTGTTACTGCG 59.065 43.478 0.00 0.00 0.00 5.18
842 858 3.334583 AGTCCATGATTGTTACTGCGT 57.665 42.857 0.00 0.00 0.00 5.24
846 867 0.726827 ATGATTGTTACTGCGTGCGG 59.273 50.000 0.00 0.00 0.00 5.69
848 869 0.370273 GATTGTTACTGCGTGCGGAG 59.630 55.000 11.37 11.37 39.56 4.63
855 876 0.246635 ACTGCGTGCGGAGAAATAGT 59.753 50.000 19.20 0.00 37.03 2.12
857 878 0.245266 TGCGTGCGGAGAAATAGTCA 59.755 50.000 0.00 0.00 0.00 3.41
863 884 4.246458 GTGCGGAGAAATAGTCAGTTTCT 58.754 43.478 1.12 1.12 45.77 2.52
907 928 9.905171 ATATATATCAAATGATCATCGAGGTCG 57.095 33.333 9.06 0.00 37.03 4.79
908 929 3.801114 TCAAATGATCATCGAGGTCGT 57.199 42.857 9.06 0.00 40.80 4.34
909 930 3.706698 TCAAATGATCATCGAGGTCGTC 58.293 45.455 9.06 0.00 40.80 4.20
910 931 2.797156 CAAATGATCATCGAGGTCGTCC 59.203 50.000 9.06 0.00 40.80 4.79
911 932 1.692411 ATGATCATCGAGGTCGTCCA 58.308 50.000 1.18 0.00 40.80 4.02
912 933 0.738975 TGATCATCGAGGTCGTCCAC 59.261 55.000 0.51 0.00 40.80 4.02
932 967 4.104776 CACCGTGTGATGATTTTATTGCC 58.895 43.478 0.00 0.00 35.23 4.52
980 1018 3.438360 CCTTTGGGATACGTACGTACAC 58.562 50.000 28.99 23.41 33.01 2.90
1011 1049 0.250640 GCAAGAGGATGATGGCCGAT 60.251 55.000 0.00 0.00 0.00 4.18
1141 1179 0.390472 CTTCTCCACGGAGCAGTTCC 60.390 60.000 8.31 0.00 41.71 3.62
1197 1235 1.075425 CCAAGCTGCTCTTCGTCTCG 61.075 60.000 1.00 0.00 31.27 4.04
1221 1259 2.504244 GCAACGTCCGACTCCTCG 60.504 66.667 0.00 0.00 39.83 4.63
1413 1451 2.502080 CGAGCCGTCACACGTCTC 60.502 66.667 0.00 0.00 42.44 3.36
1558 1599 2.094762 GGTGTACACACATGGAGACC 57.905 55.000 26.51 2.19 45.46 3.85
1695 1736 2.237066 GCCTGTGTTTGCAAACGGC 61.237 57.895 30.84 30.84 41.74 5.68
1701 1742 0.179015 TGTTTGCAAACGGCTCCCTA 60.179 50.000 31.20 13.15 45.15 3.53
1767 1811 5.648960 TGCTGTGATATCATTTTCTCTTGCA 59.351 36.000 9.02 7.16 0.00 4.08
1794 1838 1.337823 ACCTTCAGTTTCATCGGACCG 60.338 52.381 7.84 7.84 0.00 4.79
1974 2030 3.198872 GGAGATCTGGAAATTGTCGGAC 58.801 50.000 0.00 0.00 0.00 4.79
2353 2409 2.094762 TCTAGCCTTGAACCGCTTTC 57.905 50.000 0.00 0.00 36.53 2.62
2371 2427 3.915437 TTCATTTTGTTCGAGGAAGGC 57.085 42.857 0.00 0.00 0.00 4.35
2374 2430 0.887387 TTTTGTTCGAGGAAGGCCCG 60.887 55.000 0.00 0.00 40.87 6.13
2376 2432 2.125633 GTTCGAGGAAGGCCCGAC 60.126 66.667 0.00 0.00 40.87 4.79
2414 2470 2.222227 TCTTAGCCAGAGTGCTCTCA 57.778 50.000 17.51 0.00 41.68 3.27
2444 2975 4.662468 TTGCAATGTTGAAGCTTTGGTA 57.338 36.364 0.00 0.00 0.00 3.25
2808 3340 3.198068 CCAAATCTATGAGACACCCACG 58.802 50.000 0.00 0.00 0.00 4.94
2887 3419 1.214305 AGCTTCATGGGGCCAACCTA 61.214 55.000 4.39 0.00 40.03 3.08
2954 3501 8.887717 CATTGTTTTGGACCATTTTTCACTAAA 58.112 29.630 0.00 0.00 0.00 1.85
3286 3833 3.667087 TGGGAAATGCACGCTCAC 58.333 55.556 0.00 0.00 0.00 3.51
3287 3834 1.228094 TGGGAAATGCACGCTCACA 60.228 52.632 0.00 0.00 0.00 3.58
3288 3835 1.210155 GGGAAATGCACGCTCACAC 59.790 57.895 0.00 0.00 0.00 3.82
3289 3836 1.210155 GGAAATGCACGCTCACACC 59.790 57.895 0.00 0.00 0.00 4.16
3290 3837 1.514678 GGAAATGCACGCTCACACCA 61.515 55.000 0.00 0.00 0.00 4.17
3291 3838 0.310543 GAAATGCACGCTCACACCAA 59.689 50.000 0.00 0.00 0.00 3.67
3292 3839 0.030638 AAATGCACGCTCACACCAAC 59.969 50.000 0.00 0.00 0.00 3.77
3293 3840 1.795170 AATGCACGCTCACACCAACC 61.795 55.000 0.00 0.00 0.00 3.77
3294 3841 2.899838 GCACGCTCACACCAACCA 60.900 61.111 0.00 0.00 0.00 3.67
3295 3842 2.896801 GCACGCTCACACCAACCAG 61.897 63.158 0.00 0.00 0.00 4.00
3296 3843 2.111043 ACGCTCACACCAACCAGG 59.889 61.111 0.00 0.00 45.67 4.45
3297 3844 2.425592 CGCTCACACCAACCAGGA 59.574 61.111 0.00 0.00 41.22 3.86
3298 3845 1.003355 CGCTCACACCAACCAGGAT 60.003 57.895 0.00 0.00 41.22 3.24
3299 3846 1.021390 CGCTCACACCAACCAGGATC 61.021 60.000 0.00 0.00 41.22 3.36
3300 3847 0.036732 GCTCACACCAACCAGGATCA 59.963 55.000 0.00 0.00 41.22 2.92
3301 3848 1.813513 CTCACACCAACCAGGATCAC 58.186 55.000 0.00 0.00 41.22 3.06
3302 3849 0.400213 TCACACCAACCAGGATCACC 59.600 55.000 0.00 0.00 41.22 4.02
3303 3850 0.110295 CACACCAACCAGGATCACCA 59.890 55.000 0.00 0.00 41.22 4.17
3304 3851 0.110486 ACACCAACCAGGATCACCAC 59.890 55.000 0.00 0.00 41.22 4.16
3305 3852 0.110295 CACCAACCAGGATCACCACA 59.890 55.000 0.00 0.00 41.22 4.17
3306 3853 0.850100 ACCAACCAGGATCACCACAA 59.150 50.000 0.00 0.00 41.22 3.33
3307 3854 1.247567 CCAACCAGGATCACCACAAC 58.752 55.000 0.00 0.00 41.22 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.439440 GGGCTGTCAAAGTCCCTTT 57.561 52.632 0.00 0.00 45.92 3.11
14 15 2.362077 ACATGTTTGGGCTGTCAAAGTC 59.638 45.455 0.00 0.00 37.31 3.01
15 16 2.387757 ACATGTTTGGGCTGTCAAAGT 58.612 42.857 0.00 0.00 37.31 2.66
16 17 3.457610 AACATGTTTGGGCTGTCAAAG 57.542 42.857 4.92 0.00 37.31 2.77
17 18 3.529533 CAAACATGTTTGGGCTGTCAAA 58.470 40.909 34.07 0.00 44.47 2.69
18 19 3.176552 CAAACATGTTTGGGCTGTCAA 57.823 42.857 34.07 0.00 44.47 3.18
19 20 2.886862 CAAACATGTTTGGGCTGTCA 57.113 45.000 34.07 0.00 44.47 3.58
27 28 6.072728 TCGATTCCTAGTTCCAAACATGTTTG 60.073 38.462 34.51 34.51 46.93 2.93
28 29 6.001460 TCGATTCCTAGTTCCAAACATGTTT 58.999 36.000 18.13 18.13 0.00 2.83
29 30 5.556915 TCGATTCCTAGTTCCAAACATGTT 58.443 37.500 4.92 4.92 0.00 2.71
30 31 5.160607 TCGATTCCTAGTTCCAAACATGT 57.839 39.130 0.00 0.00 0.00 3.21
31 32 4.034510 GCTCGATTCCTAGTTCCAAACATG 59.965 45.833 0.00 0.00 0.00 3.21
32 33 4.080863 AGCTCGATTCCTAGTTCCAAACAT 60.081 41.667 0.00 0.00 0.00 2.71
33 34 3.260884 AGCTCGATTCCTAGTTCCAAACA 59.739 43.478 0.00 0.00 0.00 2.83
34 35 3.863041 AGCTCGATTCCTAGTTCCAAAC 58.137 45.455 0.00 0.00 0.00 2.93
35 36 4.020573 TCAAGCTCGATTCCTAGTTCCAAA 60.021 41.667 0.00 0.00 0.00 3.28
36 37 3.513912 TCAAGCTCGATTCCTAGTTCCAA 59.486 43.478 0.00 0.00 0.00 3.53
37 38 3.096852 TCAAGCTCGATTCCTAGTTCCA 58.903 45.455 0.00 0.00 0.00 3.53
38 39 3.802948 TCAAGCTCGATTCCTAGTTCC 57.197 47.619 0.00 0.00 0.00 3.62
39 40 5.812642 TCAATTCAAGCTCGATTCCTAGTTC 59.187 40.000 0.00 0.00 0.00 3.01
40 41 5.734720 TCAATTCAAGCTCGATTCCTAGTT 58.265 37.500 0.00 0.00 0.00 2.24
41 42 5.344743 TCAATTCAAGCTCGATTCCTAGT 57.655 39.130 0.00 0.00 0.00 2.57
42 43 7.439356 TGTTATCAATTCAAGCTCGATTCCTAG 59.561 37.037 0.00 0.00 0.00 3.02
43 44 7.272244 TGTTATCAATTCAAGCTCGATTCCTA 58.728 34.615 0.00 0.00 0.00 2.94
44 45 6.115446 TGTTATCAATTCAAGCTCGATTCCT 58.885 36.000 0.00 0.00 0.00 3.36
45 46 6.363577 TGTTATCAATTCAAGCTCGATTCC 57.636 37.500 0.00 0.00 0.00 3.01
46 47 7.859598 AGATGTTATCAATTCAAGCTCGATTC 58.140 34.615 0.00 0.00 0.00 2.52
47 48 7.798596 AGATGTTATCAATTCAAGCTCGATT 57.201 32.000 0.00 0.00 0.00 3.34
48 49 8.768955 GTTAGATGTTATCAATTCAAGCTCGAT 58.231 33.333 0.00 0.00 0.00 3.59
49 50 7.981789 AGTTAGATGTTATCAATTCAAGCTCGA 59.018 33.333 0.00 0.00 0.00 4.04
50 51 8.060679 CAGTTAGATGTTATCAATTCAAGCTCG 58.939 37.037 0.00 0.00 0.00 5.03
51 52 8.887717 ACAGTTAGATGTTATCAATTCAAGCTC 58.112 33.333 0.00 0.00 0.00 4.09
52 53 8.798859 ACAGTTAGATGTTATCAATTCAAGCT 57.201 30.769 0.00 0.00 0.00 3.74
65 66 8.258708 GGTCTGGAGTATTTACAGTTAGATGTT 58.741 37.037 0.00 0.00 34.56 2.71
66 67 7.620094 AGGTCTGGAGTATTTACAGTTAGATGT 59.380 37.037 0.00 0.00 37.19 3.06
67 68 8.012957 AGGTCTGGAGTATTTACAGTTAGATG 57.987 38.462 0.00 0.00 34.02 2.90
68 69 9.357161 CTAGGTCTGGAGTATTTACAGTTAGAT 57.643 37.037 0.00 0.00 34.02 1.98
69 70 8.334734 ACTAGGTCTGGAGTATTTACAGTTAGA 58.665 37.037 0.00 0.00 34.02 2.10
70 71 8.522542 ACTAGGTCTGGAGTATTTACAGTTAG 57.477 38.462 0.00 0.00 34.02 2.34
71 72 9.979897 TTACTAGGTCTGGAGTATTTACAGTTA 57.020 33.333 0.00 0.00 34.02 2.24
72 73 8.747471 GTTACTAGGTCTGGAGTATTTACAGTT 58.253 37.037 0.00 0.00 34.02 3.16
73 74 8.114743 AGTTACTAGGTCTGGAGTATTTACAGT 58.885 37.037 0.00 0.00 34.02 3.55
74 75 8.522542 AGTTACTAGGTCTGGAGTATTTACAG 57.477 38.462 0.00 0.00 0.00 2.74
75 76 8.890410 AAGTTACTAGGTCTGGAGTATTTACA 57.110 34.615 0.00 0.00 0.00 2.41
76 77 9.800433 GAAAGTTACTAGGTCTGGAGTATTTAC 57.200 37.037 0.00 0.00 0.00 2.01
77 78 9.537852 TGAAAGTTACTAGGTCTGGAGTATTTA 57.462 33.333 0.00 0.00 0.00 1.40
78 79 8.431910 TGAAAGTTACTAGGTCTGGAGTATTT 57.568 34.615 0.00 0.00 0.00 1.40
79 80 7.363968 GCTGAAAGTTACTAGGTCTGGAGTATT 60.364 40.741 0.00 0.00 35.30 1.89
80 81 6.097129 GCTGAAAGTTACTAGGTCTGGAGTAT 59.903 42.308 0.00 0.00 35.30 2.12
81 82 5.418209 GCTGAAAGTTACTAGGTCTGGAGTA 59.582 44.000 0.00 0.00 35.30 2.59
82 83 4.221041 GCTGAAAGTTACTAGGTCTGGAGT 59.779 45.833 0.00 0.00 35.30 3.85
83 84 4.675671 CGCTGAAAGTTACTAGGTCTGGAG 60.676 50.000 0.00 0.00 35.30 3.86
84 85 3.192844 CGCTGAAAGTTACTAGGTCTGGA 59.807 47.826 0.00 0.00 35.30 3.86
85 86 3.056749 ACGCTGAAAGTTACTAGGTCTGG 60.057 47.826 0.00 0.00 35.30 3.86
86 87 4.175787 ACGCTGAAAGTTACTAGGTCTG 57.824 45.455 0.00 0.00 35.30 3.51
87 88 5.972107 TTACGCTGAAAGTTACTAGGTCT 57.028 39.130 0.00 0.00 35.30 3.85
88 89 6.810182 TGAATTACGCTGAAAGTTACTAGGTC 59.190 38.462 0.00 0.00 35.30 3.85
89 90 6.694447 TGAATTACGCTGAAAGTTACTAGGT 58.306 36.000 0.00 0.00 35.30 3.08
90 91 7.306051 CGATGAATTACGCTGAAAGTTACTAGG 60.306 40.741 0.00 0.00 35.30 3.02
91 92 7.306051 CCGATGAATTACGCTGAAAGTTACTAG 60.306 40.741 0.00 0.00 35.30 2.57
92 93 6.474427 CCGATGAATTACGCTGAAAGTTACTA 59.526 38.462 0.00 0.00 35.30 1.82
93 94 5.291128 CCGATGAATTACGCTGAAAGTTACT 59.709 40.000 0.00 0.00 35.30 2.24
94 95 5.490213 CCGATGAATTACGCTGAAAGTTAC 58.510 41.667 0.00 0.00 35.30 2.50
95 96 4.569162 CCCGATGAATTACGCTGAAAGTTA 59.431 41.667 0.00 0.00 35.30 2.24
96 97 3.374058 CCCGATGAATTACGCTGAAAGTT 59.626 43.478 0.00 0.00 35.30 2.66
97 98 2.936498 CCCGATGAATTACGCTGAAAGT 59.064 45.455 0.00 0.00 35.30 2.66
98 99 2.936498 ACCCGATGAATTACGCTGAAAG 59.064 45.455 0.00 0.00 0.00 2.62
99 100 2.980568 ACCCGATGAATTACGCTGAAA 58.019 42.857 0.00 0.00 0.00 2.69
100 101 2.675844 CAACCCGATGAATTACGCTGAA 59.324 45.455 0.00 0.00 0.00 3.02
101 102 2.276201 CAACCCGATGAATTACGCTGA 58.724 47.619 0.00 0.00 0.00 4.26
102 103 2.006888 ACAACCCGATGAATTACGCTG 58.993 47.619 0.00 0.00 0.00 5.18
103 104 2.396590 ACAACCCGATGAATTACGCT 57.603 45.000 0.00 0.00 0.00 5.07
104 105 2.417239 TCAACAACCCGATGAATTACGC 59.583 45.455 0.00 0.00 0.00 4.42
105 106 3.930229 TCTCAACAACCCGATGAATTACG 59.070 43.478 0.00 0.00 0.00 3.18
106 107 5.873179 TTCTCAACAACCCGATGAATTAC 57.127 39.130 0.00 0.00 0.00 1.89
107 108 5.106317 GCTTTCTCAACAACCCGATGAATTA 60.106 40.000 0.00 0.00 0.00 1.40
108 109 4.321230 GCTTTCTCAACAACCCGATGAATT 60.321 41.667 0.00 0.00 0.00 2.17
109 110 3.191371 GCTTTCTCAACAACCCGATGAAT 59.809 43.478 0.00 0.00 0.00 2.57
110 111 2.552315 GCTTTCTCAACAACCCGATGAA 59.448 45.455 0.00 0.00 0.00 2.57
111 112 2.151202 GCTTTCTCAACAACCCGATGA 58.849 47.619 0.00 0.00 0.00 2.92
112 113 2.095567 CAGCTTTCTCAACAACCCGATG 60.096 50.000 0.00 0.00 0.00 3.84
113 114 2.154462 CAGCTTTCTCAACAACCCGAT 58.846 47.619 0.00 0.00 0.00 4.18
114 115 1.140052 TCAGCTTTCTCAACAACCCGA 59.860 47.619 0.00 0.00 0.00 5.14
115 116 1.593196 TCAGCTTTCTCAACAACCCG 58.407 50.000 0.00 0.00 0.00 5.28
116 117 2.034685 GGTTCAGCTTTCTCAACAACCC 59.965 50.000 0.00 0.00 0.00 4.11
117 118 2.952310 AGGTTCAGCTTTCTCAACAACC 59.048 45.455 0.00 0.00 33.37 3.77
118 119 3.003793 GGAGGTTCAGCTTTCTCAACAAC 59.996 47.826 0.00 0.00 0.00 3.32
119 120 3.214328 GGAGGTTCAGCTTTCTCAACAA 58.786 45.455 0.00 0.00 0.00 2.83
120 121 2.172505 TGGAGGTTCAGCTTTCTCAACA 59.827 45.455 0.00 0.00 0.00 3.33
121 122 2.851195 TGGAGGTTCAGCTTTCTCAAC 58.149 47.619 0.00 0.00 0.00 3.18
122 123 3.072915 TGATGGAGGTTCAGCTTTCTCAA 59.927 43.478 0.00 0.00 0.00 3.02
123 124 2.639347 TGATGGAGGTTCAGCTTTCTCA 59.361 45.455 0.00 0.00 0.00 3.27
124 125 3.269178 CTGATGGAGGTTCAGCTTTCTC 58.731 50.000 0.00 0.00 34.68 2.87
125 126 2.641815 ACTGATGGAGGTTCAGCTTTCT 59.358 45.455 0.78 0.00 43.57 2.52
126 127 3.006247 GACTGATGGAGGTTCAGCTTTC 58.994 50.000 0.78 0.00 43.57 2.62
127 128 2.641815 AGACTGATGGAGGTTCAGCTTT 59.358 45.455 0.78 0.00 43.57 3.51
128 129 2.264455 AGACTGATGGAGGTTCAGCTT 58.736 47.619 0.78 0.00 43.57 3.74
129 130 1.949799 AGACTGATGGAGGTTCAGCT 58.050 50.000 0.78 0.00 43.57 4.24
130 131 2.763448 AGTAGACTGATGGAGGTTCAGC 59.237 50.000 0.78 0.00 43.57 4.26
131 132 5.654650 AGTAAGTAGACTGATGGAGGTTCAG 59.345 44.000 0.00 0.00 44.95 3.02
132 133 5.580998 AGTAAGTAGACTGATGGAGGTTCA 58.419 41.667 0.00 0.00 0.00 3.18
133 134 7.055378 TCTAGTAAGTAGACTGATGGAGGTTC 58.945 42.308 0.00 0.00 32.36 3.62
134 135 6.971340 TCTAGTAAGTAGACTGATGGAGGTT 58.029 40.000 0.00 0.00 32.36 3.50
135 136 6.578313 TCTAGTAAGTAGACTGATGGAGGT 57.422 41.667 0.00 0.00 32.36 3.85
136 137 6.657541 GGATCTAGTAAGTAGACTGATGGAGG 59.342 46.154 0.00 0.00 40.76 4.30
137 138 6.370442 CGGATCTAGTAAGTAGACTGATGGAG 59.630 46.154 0.00 0.00 40.76 3.86
138 139 6.231951 CGGATCTAGTAAGTAGACTGATGGA 58.768 44.000 0.00 0.00 40.76 3.41
139 140 5.106475 GCGGATCTAGTAAGTAGACTGATGG 60.106 48.000 0.00 0.00 40.76 3.51
140 141 5.106475 GGCGGATCTAGTAAGTAGACTGATG 60.106 48.000 0.00 0.00 40.76 3.07
141 142 5.005094 GGCGGATCTAGTAAGTAGACTGAT 58.995 45.833 0.00 0.00 40.76 2.90
142 143 4.387598 GGCGGATCTAGTAAGTAGACTGA 58.612 47.826 0.00 0.00 40.76 3.41
143 144 3.186817 CGGCGGATCTAGTAAGTAGACTG 59.813 52.174 0.00 0.00 40.76 3.51
144 145 3.181456 ACGGCGGATCTAGTAAGTAGACT 60.181 47.826 13.24 0.00 40.76 3.24
145 146 3.059051 CACGGCGGATCTAGTAAGTAGAC 60.059 52.174 13.24 0.00 40.76 2.59
146 147 3.136763 CACGGCGGATCTAGTAAGTAGA 58.863 50.000 13.24 0.00 42.22 2.59
147 148 2.225963 CCACGGCGGATCTAGTAAGTAG 59.774 54.545 13.24 0.00 36.56 2.57
148 149 2.224606 CCACGGCGGATCTAGTAAGTA 58.775 52.381 13.24 0.00 36.56 2.24
149 150 1.030457 CCACGGCGGATCTAGTAAGT 58.970 55.000 13.24 0.00 36.56 2.24
150 151 1.030457 ACCACGGCGGATCTAGTAAG 58.970 55.000 13.24 0.00 38.63 2.34
151 152 1.477553 AACCACGGCGGATCTAGTAA 58.522 50.000 13.24 0.00 38.63 2.24
152 153 1.477553 AAACCACGGCGGATCTAGTA 58.522 50.000 13.24 0.00 38.63 1.82
153 154 1.477553 TAAACCACGGCGGATCTAGT 58.522 50.000 13.24 0.00 38.63 2.57
154 155 2.609737 GGATAAACCACGGCGGATCTAG 60.610 54.545 13.24 0.00 38.63 2.43
155 156 1.342174 GGATAAACCACGGCGGATCTA 59.658 52.381 13.24 0.00 38.63 1.98
179 180 1.358759 CGGTTTGTCCAGCAACACC 59.641 57.895 0.00 0.00 36.72 4.16
180 181 0.248458 CACGGTTTGTCCAGCAACAC 60.248 55.000 0.00 0.00 36.72 3.32
181 182 1.999071 GCACGGTTTGTCCAGCAACA 61.999 55.000 0.00 0.00 36.72 3.33
182 183 1.299089 GCACGGTTTGTCCAGCAAC 60.299 57.895 0.00 0.00 36.72 4.17
183 184 1.444119 GAGCACGGTTTGTCCAGCAA 61.444 55.000 0.00 0.00 38.72 3.91
191 192 0.165944 GACGAATGGAGCACGGTTTG 59.834 55.000 0.00 0.00 0.00 2.93
192 193 1.289109 CGACGAATGGAGCACGGTTT 61.289 55.000 0.00 0.00 0.00 3.27
196 197 3.554692 GCCGACGAATGGAGCACG 61.555 66.667 0.00 0.00 0.00 5.34
206 207 3.040414 CTGCGAGAAGAGCCGACGA 62.040 63.158 0.00 0.00 0.00 4.20
207 208 2.578178 CTGCGAGAAGAGCCGACG 60.578 66.667 0.00 0.00 0.00 5.12
209 210 4.135153 GCCTGCGAGAAGAGCCGA 62.135 66.667 0.00 0.00 0.00 5.54
214 215 1.519246 CTGGATGCCTGCGAGAAGA 59.481 57.895 0.00 0.00 0.00 2.87
232 233 2.103941 GAGATGGAAGAGGATGGTGACC 59.896 54.545 0.00 0.00 0.00 4.02
236 237 0.755686 GCGAGATGGAAGAGGATGGT 59.244 55.000 0.00 0.00 0.00 3.55
238 239 1.335780 CGAGCGAGATGGAAGAGGATG 60.336 57.143 0.00 0.00 0.00 3.51
239 240 0.958091 CGAGCGAGATGGAAGAGGAT 59.042 55.000 0.00 0.00 0.00 3.24
260 261 4.662961 CACCTCGACACTGCGGCA 62.663 66.667 1.29 1.29 0.00 5.69
306 307 8.425577 TGGTTTTTCTCGCAATGATTTAAAAA 57.574 26.923 0.00 0.00 0.00 1.94
319 320 0.318360 CCGGGTTTGGTTTTTCTCGC 60.318 55.000 0.00 0.00 0.00 5.03
321 322 2.953648 TCTTCCGGGTTTGGTTTTTCTC 59.046 45.455 0.00 0.00 0.00 2.87
349 350 5.177725 TCTCTTGCTTTTTCGGGTTTTAC 57.822 39.130 0.00 0.00 0.00 2.01
363 364 7.410120 TTTCTTCCTTTCTTTTTCTCTTGCT 57.590 32.000 0.00 0.00 0.00 3.91
386 387 5.037385 GCTGCTTCTCTTTTTCGTCTTTTT 58.963 37.500 0.00 0.00 0.00 1.94
387 388 4.096382 TGCTGCTTCTCTTTTTCGTCTTTT 59.904 37.500 0.00 0.00 0.00 2.27
388 389 3.627577 TGCTGCTTCTCTTTTTCGTCTTT 59.372 39.130 0.00 0.00 0.00 2.52
389 390 3.206150 TGCTGCTTCTCTTTTTCGTCTT 58.794 40.909 0.00 0.00 0.00 3.01
390 391 2.805099 CTGCTGCTTCTCTTTTTCGTCT 59.195 45.455 0.00 0.00 0.00 4.18
391 392 2.664151 GCTGCTGCTTCTCTTTTTCGTC 60.664 50.000 8.53 0.00 36.03 4.20
413 414 3.702048 TAGGCGGTTCCTTGCGCT 61.702 61.111 9.73 0.00 44.75 5.92
414 415 3.497031 GTAGGCGGTTCCTTGCGC 61.497 66.667 0.00 0.00 44.75 6.09
415 416 2.100631 CAGTAGGCGGTTCCTTGCG 61.101 63.158 0.00 0.00 44.75 4.85
461 462 1.130561 GTCAAATAGTTGAGGCCACGC 59.869 52.381 5.73 0.00 44.44 5.34
471 472 2.224784 GTCAAACGGGCGTCAAATAGTT 59.775 45.455 0.00 0.00 0.00 2.24
498 499 2.199236 GTAAGTCCTATTTGACGCCCG 58.801 52.381 0.00 0.00 40.26 6.13
499 500 2.558378 GGTAAGTCCTATTTGACGCCC 58.442 52.381 0.00 0.00 40.26 6.13
500 501 2.199236 CGGTAAGTCCTATTTGACGCC 58.801 52.381 0.00 0.00 40.26 5.68
501 502 2.884827 ACGGTAAGTCCTATTTGACGC 58.115 47.619 0.00 0.00 40.26 5.19
502 503 5.913514 CAGATACGGTAAGTCCTATTTGACG 59.086 44.000 0.00 0.00 40.26 4.35
503 504 7.013083 TCTCAGATACGGTAAGTCCTATTTGAC 59.987 40.741 0.00 0.00 35.43 3.18
506 507 6.017275 CGTCTCAGATACGGTAAGTCCTATTT 60.017 42.308 0.37 0.00 36.71 1.40
514 515 3.204526 ACCTCGTCTCAGATACGGTAAG 58.795 50.000 8.36 0.00 40.68 2.34
560 561 1.437986 GATCGACACCCCTCCTTCG 59.562 63.158 0.00 0.00 0.00 3.79
576 577 1.897398 GCTTTTGCGACACGGACGAT 61.897 55.000 0.00 0.00 34.86 3.73
577 578 2.591311 GCTTTTGCGACACGGACGA 61.591 57.895 0.00 0.00 34.86 4.20
578 579 2.127758 GCTTTTGCGACACGGACG 60.128 61.111 0.00 0.00 34.86 4.79
591 592 4.872691 CGAGATGAACAGGTGATTAGCTTT 59.127 41.667 0.00 0.00 30.85 3.51
592 593 4.081420 ACGAGATGAACAGGTGATTAGCTT 60.081 41.667 0.00 0.00 30.85 3.74
600 601 1.901538 CGAGACGAGATGAACAGGTG 58.098 55.000 0.00 0.00 0.00 4.00
601 602 0.171455 GCGAGACGAGATGAACAGGT 59.829 55.000 0.00 0.00 0.00 4.00
604 605 0.456824 GCAGCGAGACGAGATGAACA 60.457 55.000 0.00 0.00 0.00 3.18
609 610 2.103934 GCAGCAGCGAGACGAGAT 59.896 61.111 0.00 0.00 0.00 2.75
613 614 3.260483 GATGGCAGCAGCGAGACG 61.260 66.667 0.00 0.00 43.41 4.18
614 615 3.260483 CGATGGCAGCAGCGAGAC 61.260 66.667 2.73 0.00 43.41 3.36
615 616 3.706563 GACGATGGCAGCAGCGAGA 62.707 63.158 7.61 0.00 43.41 4.04
616 617 3.260483 GACGATGGCAGCAGCGAG 61.260 66.667 7.61 0.00 43.41 5.03
617 618 3.300934 AAGACGATGGCAGCAGCGA 62.301 57.895 7.61 0.00 43.41 4.93
625 626 4.547367 CCGGGGGAAGACGATGGC 62.547 72.222 0.00 0.00 0.00 4.40
631 632 0.973632 AAATTTTGCCGGGGGAAGAC 59.026 50.000 2.18 0.00 0.00 3.01
642 643 2.733517 TGGACGAACGGAAAATTTTGC 58.266 42.857 8.47 10.47 0.00 3.68
658 659 0.984230 TGACTGGGATGGAGTTGGAC 59.016 55.000 0.00 0.00 0.00 4.02
662 663 2.334006 ACTCTGACTGGGATGGAGTT 57.666 50.000 0.00 0.00 34.13 3.01
664 665 3.304911 TCTACTCTGACTGGGATGGAG 57.695 52.381 0.00 0.00 0.00 3.86
666 667 4.826274 TTTTCTACTCTGACTGGGATGG 57.174 45.455 0.00 0.00 0.00 3.51
667 668 5.046529 CGATTTTCTACTCTGACTGGGATG 58.953 45.833 0.00 0.00 0.00 3.51
668 669 4.956700 TCGATTTTCTACTCTGACTGGGAT 59.043 41.667 0.00 0.00 0.00 3.85
669 670 4.341487 TCGATTTTCTACTCTGACTGGGA 58.659 43.478 0.00 0.00 0.00 4.37
670 671 4.158764 ACTCGATTTTCTACTCTGACTGGG 59.841 45.833 0.00 0.00 0.00 4.45
671 672 5.124776 AGACTCGATTTTCTACTCTGACTGG 59.875 44.000 0.00 0.00 0.00 4.00
672 673 6.189677 AGACTCGATTTTCTACTCTGACTG 57.810 41.667 0.00 0.00 0.00 3.51
675 676 5.864474 GCAAAGACTCGATTTTCTACTCTGA 59.136 40.000 0.00 0.00 0.00 3.27
678 679 4.330347 GGGCAAAGACTCGATTTTCTACTC 59.670 45.833 0.00 0.00 0.00 2.59
681 682 4.504858 GAGGGCAAAGACTCGATTTTCTA 58.495 43.478 0.00 0.00 0.00 2.10
714 715 3.854669 AATCTCGCAGCCCCCTCG 61.855 66.667 0.00 0.00 0.00 4.63
716 717 2.262774 CTTCAATCTCGCAGCCCCCT 62.263 60.000 0.00 0.00 0.00 4.79
717 718 1.821332 CTTCAATCTCGCAGCCCCC 60.821 63.158 0.00 0.00 0.00 5.40
723 727 1.202417 GGATCGACCTTCAATCTCGCA 60.202 52.381 0.00 0.00 35.41 5.10
745 749 2.669781 ACCACCGGTAGGAATCGATTA 58.330 47.619 24.32 0.00 41.02 1.75
748 752 1.392589 GTACCACCGGTAGGAATCGA 58.607 55.000 24.32 0.00 39.02 3.59
759 763 1.137404 CTTCCGTACCGTACCACCG 59.863 63.158 3.04 0.00 0.00 4.94
761 765 0.038343 TTGCTTCCGTACCGTACCAC 60.038 55.000 3.04 0.00 0.00 4.16
788 794 0.390603 TGGTAGTTGATGCGAACGGG 60.391 55.000 0.00 0.00 0.00 5.28
789 795 0.999406 CTGGTAGTTGATGCGAACGG 59.001 55.000 0.00 0.00 0.00 4.44
790 796 1.990799 TCTGGTAGTTGATGCGAACG 58.009 50.000 0.00 0.00 0.00 3.95
791 797 2.535984 CGATCTGGTAGTTGATGCGAAC 59.464 50.000 0.00 0.00 0.00 3.95
792 798 2.425668 TCGATCTGGTAGTTGATGCGAA 59.574 45.455 0.00 0.00 0.00 4.70
793 799 2.021457 TCGATCTGGTAGTTGATGCGA 58.979 47.619 0.00 0.00 0.00 5.10
794 800 2.492019 TCGATCTGGTAGTTGATGCG 57.508 50.000 0.00 0.00 0.00 4.73
795 801 4.553547 GCAAATCGATCTGGTAGTTGATGC 60.554 45.833 0.00 0.00 0.00 3.91
796 802 4.571984 TGCAAATCGATCTGGTAGTTGATG 59.428 41.667 0.00 0.00 0.00 3.07
797 803 4.769688 TGCAAATCGATCTGGTAGTTGAT 58.230 39.130 0.00 0.00 0.00 2.57
798 804 4.081697 TCTGCAAATCGATCTGGTAGTTGA 60.082 41.667 0.00 0.00 0.00 3.18
799 805 4.183865 TCTGCAAATCGATCTGGTAGTTG 58.816 43.478 0.00 0.00 0.00 3.16
800 806 4.471904 TCTGCAAATCGATCTGGTAGTT 57.528 40.909 0.00 0.00 0.00 2.24
801 807 4.081420 ACTTCTGCAAATCGATCTGGTAGT 60.081 41.667 0.00 0.00 0.00 2.73
802 808 4.437239 ACTTCTGCAAATCGATCTGGTAG 58.563 43.478 0.00 0.53 0.00 3.18
803 809 4.433615 GACTTCTGCAAATCGATCTGGTA 58.566 43.478 0.00 0.00 0.00 3.25
804 810 3.265791 GACTTCTGCAAATCGATCTGGT 58.734 45.455 0.00 0.00 0.00 4.00
816 822 4.696877 CAGTAACAATCATGGACTTCTGCA 59.303 41.667 0.00 0.00 0.00 4.41
818 824 4.201753 CGCAGTAACAATCATGGACTTCTG 60.202 45.833 0.00 0.00 0.00 3.02
820 826 3.684788 ACGCAGTAACAATCATGGACTTC 59.315 43.478 0.00 0.00 41.94 3.01
825 841 1.529622 CGCACGCAGTAACAATCATGG 60.530 52.381 0.00 0.00 41.61 3.66
835 851 1.475280 ACTATTTCTCCGCACGCAGTA 59.525 47.619 0.00 0.00 41.61 2.74
837 853 0.924090 GACTATTTCTCCGCACGCAG 59.076 55.000 0.00 0.00 0.00 5.18
838 854 0.245266 TGACTATTTCTCCGCACGCA 59.755 50.000 0.00 0.00 0.00 5.24
839 855 0.924090 CTGACTATTTCTCCGCACGC 59.076 55.000 0.00 0.00 0.00 5.34
841 857 4.246458 AGAAACTGACTATTTCTCCGCAC 58.754 43.478 0.00 0.00 41.53 5.34
842 858 4.537135 AGAAACTGACTATTTCTCCGCA 57.463 40.909 0.00 0.00 41.53 5.69
882 903 8.903820 ACGACCTCGATGATCATTTGATATATA 58.096 33.333 10.14 0.00 43.02 0.86
885 906 6.030548 ACGACCTCGATGATCATTTGATAT 57.969 37.500 10.14 2.77 43.02 1.63
886 907 5.453567 ACGACCTCGATGATCATTTGATA 57.546 39.130 10.14 0.00 43.02 2.15
887 908 4.302455 GACGACCTCGATGATCATTTGAT 58.698 43.478 10.14 0.00 43.02 2.57
888 909 3.490933 GGACGACCTCGATGATCATTTGA 60.491 47.826 10.14 10.17 43.02 2.69
891 912 2.031870 TGGACGACCTCGATGATCATT 58.968 47.619 10.14 0.00 43.02 2.57
892 913 1.338337 GTGGACGACCTCGATGATCAT 59.662 52.381 8.25 8.25 43.02 2.45
893 914 0.738975 GTGGACGACCTCGATGATCA 59.261 55.000 5.33 0.00 43.02 2.92
894 915 0.030908 GGTGGACGACCTCGATGATC 59.969 60.000 5.33 0.00 42.25 2.92
895 916 2.116383 GGTGGACGACCTCGATGAT 58.884 57.895 5.33 0.00 42.25 2.45
896 917 3.599584 GGTGGACGACCTCGATGA 58.400 61.111 5.33 0.00 42.25 2.92
907 928 5.331902 CAATAAAATCATCACACGGTGGAC 58.668 41.667 13.48 0.00 33.87 4.02
908 929 4.142491 GCAATAAAATCATCACACGGTGGA 60.142 41.667 13.48 7.38 33.87 4.02
909 930 4.104776 GCAATAAAATCATCACACGGTGG 58.895 43.478 13.48 1.73 33.87 4.61
910 931 4.104776 GGCAATAAAATCATCACACGGTG 58.895 43.478 6.58 6.58 34.45 4.94
911 932 3.181501 CGGCAATAAAATCATCACACGGT 60.182 43.478 0.00 0.00 0.00 4.83
912 933 3.064682 TCGGCAATAAAATCATCACACGG 59.935 43.478 0.00 0.00 0.00 4.94
913 934 4.028383 GTCGGCAATAAAATCATCACACG 58.972 43.478 0.00 0.00 0.00 4.49
915 936 4.013050 TGGTCGGCAATAAAATCATCACA 58.987 39.130 0.00 0.00 0.00 3.58
916 937 4.630894 TGGTCGGCAATAAAATCATCAC 57.369 40.909 0.00 0.00 0.00 3.06
917 938 5.850557 ATTGGTCGGCAATAAAATCATCA 57.149 34.783 0.00 0.00 0.00 3.07
918 939 6.272318 TCAATTGGTCGGCAATAAAATCATC 58.728 36.000 5.42 0.00 0.00 2.92
919 940 6.219417 TCAATTGGTCGGCAATAAAATCAT 57.781 33.333 5.42 0.00 0.00 2.45
932 967 3.116300 ACTCGAATCGATCAATTGGTCG 58.884 45.455 30.71 30.71 39.11 4.79
980 1018 1.406898 TCCTCTTGCTGCTACTCATCG 59.593 52.381 0.00 0.00 0.00 3.84
1011 1049 2.266372 CAACCACCGCCGGATACA 59.734 61.111 11.71 0.00 0.00 2.29
1197 1235 4.980805 TCGGACGTTGCTGTGGGC 62.981 66.667 0.00 0.00 42.22 5.36
1221 1259 1.080434 GACTGAGCACACCTCCGTC 60.080 63.158 0.37 0.37 44.10 4.79
1371 1409 1.200483 CCGCGTTGCAGATGTAGTAG 58.800 55.000 4.92 0.00 0.00 2.57
1558 1599 0.037605 GGAGAACCACCACCTACGTG 60.038 60.000 0.00 0.00 36.58 4.49
1638 1679 1.089920 CATCACTAACAGCAGCACCC 58.910 55.000 0.00 0.00 0.00 4.61
1695 1736 1.668101 GGAGCGACCAGTGTAGGGAG 61.668 65.000 0.00 0.00 38.79 4.30
1794 1838 3.195698 GATGTCCAGAACGGCGGC 61.196 66.667 13.24 0.00 33.14 6.53
1797 1841 3.195698 GGCGATGTCCAGAACGGC 61.196 66.667 0.00 0.00 42.98 5.68
2156 2212 3.957497 AGAGCTAAGGTCATAGGTGTGAG 59.043 47.826 0.00 0.00 33.96 3.51
2353 2409 1.202348 GGGCCTTCCTCGAACAAAATG 59.798 52.381 0.84 0.00 0.00 2.32
2371 2427 3.253677 GTGTACATCATAGAGAGGTCGGG 59.746 52.174 0.00 0.00 41.01 5.14
2374 2430 6.952773 AGAAGTGTACATCATAGAGAGGTC 57.047 41.667 0.00 0.00 41.01 3.85
2376 2432 7.367285 GCTAAGAAGTGTACATCATAGAGAGG 58.633 42.308 11.20 0.00 0.00 3.69
2414 2470 4.034279 GCTTCAACATTGCAAAATGTGTGT 59.966 37.500 1.71 0.00 42.13 3.72
2808 3340 6.662414 TTTTCAGTTACACGATGATCCATC 57.338 37.500 0.00 0.00 37.50 3.51
3269 3816 1.228094 TGTGAGCGTGCATTTCCCA 60.228 52.632 0.00 0.00 0.00 4.37
3270 3817 1.210155 GTGTGAGCGTGCATTTCCC 59.790 57.895 0.00 0.00 0.00 3.97
3271 3818 1.210155 GGTGTGAGCGTGCATTTCC 59.790 57.895 0.00 0.00 0.00 3.13
3272 3819 0.310543 TTGGTGTGAGCGTGCATTTC 59.689 50.000 0.00 0.00 0.00 2.17
3273 3820 0.030638 GTTGGTGTGAGCGTGCATTT 59.969 50.000 0.00 0.00 0.00 2.32
3274 3821 1.654220 GTTGGTGTGAGCGTGCATT 59.346 52.632 0.00 0.00 0.00 3.56
3275 3822 2.260869 GGTTGGTGTGAGCGTGCAT 61.261 57.895 0.00 0.00 0.00 3.96
3276 3823 2.899838 GGTTGGTGTGAGCGTGCA 60.900 61.111 0.00 0.00 0.00 4.57
3277 3824 2.896801 CTGGTTGGTGTGAGCGTGC 61.897 63.158 0.00 0.00 0.00 5.34
3278 3825 2.253758 CCTGGTTGGTGTGAGCGTG 61.254 63.158 0.00 0.00 0.00 5.34
3279 3826 1.768684 ATCCTGGTTGGTGTGAGCGT 61.769 55.000 0.00 0.00 37.07 5.07
3280 3827 1.003355 ATCCTGGTTGGTGTGAGCG 60.003 57.895 0.00 0.00 37.07 5.03
3281 3828 0.036732 TGATCCTGGTTGGTGTGAGC 59.963 55.000 0.00 0.00 37.07 4.26
3282 3829 1.611673 GGTGATCCTGGTTGGTGTGAG 60.612 57.143 0.00 0.00 37.07 3.51
3283 3830 0.400213 GGTGATCCTGGTTGGTGTGA 59.600 55.000 0.00 0.00 37.07 3.58
3284 3831 0.110295 TGGTGATCCTGGTTGGTGTG 59.890 55.000 0.00 0.00 37.07 3.82
3285 3832 0.110486 GTGGTGATCCTGGTTGGTGT 59.890 55.000 0.00 0.00 37.07 4.16
3286 3833 0.110295 TGTGGTGATCCTGGTTGGTG 59.890 55.000 0.00 0.00 37.07 4.17
3287 3834 0.850100 TTGTGGTGATCCTGGTTGGT 59.150 50.000 0.00 0.00 37.07 3.67
3288 3835 1.247567 GTTGTGGTGATCCTGGTTGG 58.752 55.000 0.00 0.00 34.23 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.