Multiple sequence alignment - TraesCS4D01G313000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G313000 chr4D 100.000 3628 0 0 1 3628 479347572 479343945 0.000000e+00 6700.0
1 TraesCS4D01G313000 chr4A 86.205 2095 139 62 581 2551 685743272 685741204 0.000000e+00 2130.0
2 TraesCS4D01G313000 chr4A 86.223 421 35 11 1 413 685743919 685743514 5.560000e-118 435.0
3 TraesCS4D01G313000 chr4A 90.698 172 10 3 3456 3623 719728211 719728380 1.310000e-54 224.0
4 TraesCS4D01G313000 chr4A 86.034 179 13 7 2664 2839 685739928 685739759 8.000000e-42 182.0
5 TraesCS4D01G313000 chr4A 85.507 69 5 3 496 559 685743499 685743431 2.340000e-07 67.6
6 TraesCS4D01G313000 chr4B 90.109 1658 67 43 792 2387 605933133 605931511 0.000000e+00 2063.0
7 TraesCS4D01G313000 chr4B 85.920 625 64 18 2849 3460 605848572 605847959 0.000000e+00 645.0
8 TraesCS4D01G313000 chr4B 89.438 445 36 6 2415 2853 605884041 605883602 5.290000e-153 551.0
9 TraesCS4D01G313000 chr4B 88.745 462 25 12 3 451 605933817 605933370 1.150000e-149 540.0
10 TraesCS4D01G313000 chr4B 87.810 443 23 10 2409 2839 605931453 605931030 1.170000e-134 490.0
11 TraesCS4D01G313000 chr4B 85.789 190 13 6 536 723 605933346 605933169 4.780000e-44 189.0
12 TraesCS4D01G313000 chr4B 91.139 79 6 1 2857 2935 605931042 605930965 4.950000e-19 106.0
13 TraesCS4D01G313000 chrUn 94.798 173 9 0 3456 3628 471786339 471786511 1.660000e-68 270.0
14 TraesCS4D01G313000 chr3A 94.798 173 8 1 3456 3628 425983573 425983744 5.970000e-68 268.0
15 TraesCS4D01G313000 chr3B 94.253 174 9 1 3455 3628 551546703 551546531 7.720000e-67 265.0
16 TraesCS4D01G313000 chr3B 89.205 176 15 3 3453 3628 622138817 622138988 2.190000e-52 217.0
17 TraesCS4D01G313000 chr7D 93.642 173 11 0 3456 3628 419774795 419774967 3.590000e-65 259.0
18 TraesCS4D01G313000 chr2D 93.103 174 11 1 3455 3628 584838667 584838495 1.670000e-63 254.0
19 TraesCS4D01G313000 chr5A 92.090 177 12 2 3453 3628 673034082 673034257 7.780000e-62 248.0
20 TraesCS4D01G313000 chr5B 90.751 173 16 0 3456 3628 258475266 258475438 7.830000e-57 231.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G313000 chr4D 479343945 479347572 3627 True 6700.00 6700 100.00000 1 3628 1 chr4D.!!$R1 3627
1 TraesCS4D01G313000 chr4A 685739759 685743919 4160 True 703.65 2130 85.99225 1 2839 4 chr4A.!!$R1 2838
2 TraesCS4D01G313000 chr4B 605930965 605933817 2852 True 677.60 2063 88.71840 3 2935 5 chr4B.!!$R3 2932
3 TraesCS4D01G313000 chr4B 605847959 605848572 613 True 645.00 645 85.92000 2849 3460 1 chr4B.!!$R1 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 455 0.023732 CACGACTATTTCTGCACGCG 59.976 55.0 3.53 3.53 0.0 6.01 F
439 456 0.109458 ACGACTATTTCTGCACGCGA 60.109 50.0 15.93 0.00 0.0 5.87 F
440 457 0.294887 CGACTATTTCTGCACGCGAC 59.705 55.0 15.93 4.74 0.0 5.19 F
2007 2277 0.325016 ATTACCGTCTTCTCCCCCGT 60.325 55.0 0.00 0.00 0.0 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1434 1701 0.109132 GCTCACCCTGCAAAAATCCG 60.109 55.0 0.00 0.0 0.00 4.18 R
1988 2258 0.325016 ACGGGGGAGAAGACGGTAAT 60.325 55.0 0.00 0.0 0.00 1.89 R
2016 2286 0.811219 GCTACATGCATGGCGAGTGA 60.811 55.0 29.41 5.8 42.31 3.41 R
3510 5095 0.041090 CCAGCCCCACAACCCTAATT 59.959 55.0 0.00 0.0 0.00 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.224762 GAGTACTAGATTACAGGGGGCTT 58.775 47.826 0.00 0.00 0.00 4.35
28 29 1.972588 AGATTACAGGGGGCTTGAGT 58.027 50.000 0.00 0.00 0.00 3.41
46 47 5.277601 TGAGTTTTACGCAGCTGATTTAC 57.722 39.130 20.43 6.94 0.00 2.01
52 53 1.271926 ACGCAGCTGATTTACCCCTTT 60.272 47.619 20.43 0.00 0.00 3.11
64 65 1.303236 CCCCTTTGTCATGCACCGA 60.303 57.895 0.00 0.00 0.00 4.69
65 66 0.680921 CCCCTTTGTCATGCACCGAT 60.681 55.000 0.00 0.00 0.00 4.18
66 67 0.452987 CCCTTTGTCATGCACCGATG 59.547 55.000 0.00 0.00 0.00 3.84
67 68 1.452110 CCTTTGTCATGCACCGATGA 58.548 50.000 0.00 0.00 0.00 2.92
68 69 1.399440 CCTTTGTCATGCACCGATGAG 59.601 52.381 0.00 0.00 32.92 2.90
126 127 2.930109 TTTGGGGCCCTGCTATTTAA 57.070 45.000 25.93 3.49 0.00 1.52
291 295 0.688749 GGAAAGGGGCTGCCATGATT 60.689 55.000 22.05 9.38 0.00 2.57
292 296 1.197812 GAAAGGGGCTGCCATGATTT 58.802 50.000 22.05 14.23 0.00 2.17
293 297 0.906775 AAAGGGGCTGCCATGATTTG 59.093 50.000 22.05 0.00 0.00 2.32
294 298 0.041535 AAGGGGCTGCCATGATTTGA 59.958 50.000 22.05 0.00 0.00 2.69
295 299 0.263765 AGGGGCTGCCATGATTTGAT 59.736 50.000 22.05 0.00 0.00 2.57
311 315 6.064060 TGATTTGATTTCAAGGCGATCCTAT 58.936 36.000 0.00 0.00 43.40 2.57
315 319 6.377327 TGATTTCAAGGCGATCCTATTTTC 57.623 37.500 0.00 0.00 43.40 2.29
337 341 2.481276 CGTGACACCTGAACAGACAAGA 60.481 50.000 0.00 0.00 0.00 3.02
338 342 3.531538 GTGACACCTGAACAGACAAGAA 58.468 45.455 3.19 0.00 0.00 2.52
342 346 3.199946 ACACCTGAACAGACAAGAAGGAA 59.800 43.478 3.19 0.00 0.00 3.36
346 350 4.036852 CCTGAACAGACAAGAAGGAAAACC 59.963 45.833 3.19 0.00 0.00 3.27
349 353 4.503714 ACAGACAAGAAGGAAAACCTCA 57.496 40.909 0.00 0.00 0.00 3.86
393 410 0.669318 TCATCCGGTGTGCGAGAAAC 60.669 55.000 0.00 0.00 0.00 2.78
401 418 0.458716 TGTGCGAGAAACGTGTCACA 60.459 50.000 8.78 0.89 44.60 3.58
414 431 3.575256 ACGTGTCACAGATGGTAGGTTAA 59.425 43.478 3.42 0.00 0.00 2.01
421 438 5.105473 TCACAGATGGTAGGTTAAGTAGCAC 60.105 44.000 0.00 0.00 31.01 4.40
423 440 4.097437 CAGATGGTAGGTTAAGTAGCACGA 59.903 45.833 0.00 0.00 31.01 4.35
430 447 6.694844 GGTAGGTTAAGTAGCACGACTATTTC 59.305 42.308 0.00 0.00 33.29 2.17
431 448 6.527057 AGGTTAAGTAGCACGACTATTTCT 57.473 37.500 0.00 0.00 33.29 2.52
432 449 6.331061 AGGTTAAGTAGCACGACTATTTCTG 58.669 40.000 0.00 0.00 33.29 3.02
433 450 5.005490 GGTTAAGTAGCACGACTATTTCTGC 59.995 44.000 0.00 0.00 33.29 4.26
435 452 3.512680 AGTAGCACGACTATTTCTGCAC 58.487 45.455 0.00 0.00 33.31 4.57
436 453 1.350193 AGCACGACTATTTCTGCACG 58.650 50.000 0.00 0.00 33.31 5.34
437 454 0.247301 GCACGACTATTTCTGCACGC 60.247 55.000 0.00 0.00 31.99 5.34
438 455 0.023732 CACGACTATTTCTGCACGCG 59.976 55.000 3.53 3.53 0.00 6.01
439 456 0.109458 ACGACTATTTCTGCACGCGA 60.109 50.000 15.93 0.00 0.00 5.87
440 457 0.294887 CGACTATTTCTGCACGCGAC 59.705 55.000 15.93 4.74 0.00 5.19
441 458 1.346365 GACTATTTCTGCACGCGACA 58.654 50.000 15.93 10.08 0.00 4.35
443 460 1.459592 ACTATTTCTGCACGCGACAAC 59.540 47.619 15.93 0.00 0.00 3.32
444 461 1.726791 CTATTTCTGCACGCGACAACT 59.273 47.619 15.93 0.00 0.00 3.16
445 462 0.512952 ATTTCTGCACGCGACAACTC 59.487 50.000 15.93 0.00 0.00 3.01
446 463 0.529773 TTTCTGCACGCGACAACTCT 60.530 50.000 15.93 0.00 0.00 3.24
447 464 0.939577 TTCTGCACGCGACAACTCTC 60.940 55.000 15.93 0.00 0.00 3.20
448 465 1.372251 CTGCACGCGACAACTCTCT 60.372 57.895 15.93 0.00 0.00 3.10
449 466 1.340657 CTGCACGCGACAACTCTCTC 61.341 60.000 15.93 0.00 0.00 3.20
450 467 1.081108 GCACGCGACAACTCTCTCT 60.081 57.895 15.93 0.00 0.00 3.10
451 468 1.068287 GCACGCGACAACTCTCTCTC 61.068 60.000 15.93 0.00 0.00 3.20
452 469 0.519519 CACGCGACAACTCTCTCTCT 59.480 55.000 15.93 0.00 0.00 3.10
453 470 0.800012 ACGCGACAACTCTCTCTCTC 59.200 55.000 15.93 0.00 0.00 3.20
454 471 1.083489 CGCGACAACTCTCTCTCTCT 58.917 55.000 0.00 0.00 0.00 3.10
455 472 1.062002 CGCGACAACTCTCTCTCTCTC 59.938 57.143 0.00 0.00 0.00 3.20
456 473 2.356135 GCGACAACTCTCTCTCTCTCT 58.644 52.381 0.00 0.00 0.00 3.10
457 474 2.351726 GCGACAACTCTCTCTCTCTCTC 59.648 54.545 0.00 0.00 0.00 3.20
458 475 3.861840 CGACAACTCTCTCTCTCTCTCT 58.138 50.000 0.00 0.00 0.00 3.10
459 476 3.865745 CGACAACTCTCTCTCTCTCTCTC 59.134 52.174 0.00 0.00 0.00 3.20
460 477 4.382040 CGACAACTCTCTCTCTCTCTCTCT 60.382 50.000 0.00 0.00 0.00 3.10
461 478 5.091261 ACAACTCTCTCTCTCTCTCTCTC 57.909 47.826 0.00 0.00 0.00 3.20
462 479 4.780021 ACAACTCTCTCTCTCTCTCTCTCT 59.220 45.833 0.00 0.00 0.00 3.10
463 480 5.105146 ACAACTCTCTCTCTCTCTCTCTCTC 60.105 48.000 0.00 0.00 0.00 3.20
464 481 4.877773 ACTCTCTCTCTCTCTCTCTCTCT 58.122 47.826 0.00 0.00 0.00 3.10
465 482 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
466 483 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
467 484 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
468 485 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
469 486 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
470 487 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
471 488 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
472 489 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
473 490 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
474 491 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
475 492 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
476 493 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
477 494 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
478 495 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
479 496 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
480 497 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
494 511 4.858850 TCTCTCTCTCTCTCTCTGCATTT 58.141 43.478 0.00 0.00 0.00 2.32
526 543 5.761726 TGACATCTCTAATGATTGGCATGTC 59.238 40.000 18.17 18.17 39.46 3.06
531 548 6.124340 TCTCTAATGATTGGCATGTCACATT 58.876 36.000 17.22 17.22 37.28 2.71
533 550 2.658373 TGATTGGCATGTCACATTGC 57.342 45.000 0.00 0.00 38.14 3.56
534 551 1.135344 TGATTGGCATGTCACATTGCG 60.135 47.619 0.00 0.00 39.78 4.85
613 772 4.386711 TCTGATTCCATCTAGCAGCATTG 58.613 43.478 0.00 0.00 0.00 2.82
636 799 3.473923 AACCATTCTTTTTGGGCACTG 57.526 42.857 0.00 0.00 38.64 3.66
639 802 2.364970 CCATTCTTTTTGGGCACTGACA 59.635 45.455 0.00 0.00 0.00 3.58
640 803 3.553508 CCATTCTTTTTGGGCACTGACAG 60.554 47.826 0.00 0.00 0.00 3.51
641 804 1.032014 TCTTTTTGGGCACTGACAGC 58.968 50.000 1.25 0.00 0.00 4.40
704 868 3.701205 TCTTGTGCAAATCTAGCAGGA 57.299 42.857 0.00 0.00 43.63 3.86
705 869 4.019792 TCTTGTGCAAATCTAGCAGGAA 57.980 40.909 0.00 0.00 43.63 3.36
706 870 4.005650 TCTTGTGCAAATCTAGCAGGAAG 58.994 43.478 0.00 0.00 43.63 3.46
726 898 2.643551 GCAACACCCATGCTACATAGT 58.356 47.619 0.00 0.00 40.64 2.12
727 899 3.804036 GCAACACCCATGCTACATAGTA 58.196 45.455 0.00 0.00 40.64 1.82
729 901 4.273480 GCAACACCCATGCTACATAGTAAG 59.727 45.833 0.00 0.00 40.64 2.34
730 902 5.428253 CAACACCCATGCTACATAGTAAGT 58.572 41.667 0.00 0.00 0.00 2.24
731 903 6.578944 CAACACCCATGCTACATAGTAAGTA 58.421 40.000 0.00 0.00 0.00 2.24
732 904 6.158023 ACACCCATGCTACATAGTAAGTAC 57.842 41.667 0.00 0.00 0.00 2.73
733 905 5.220381 CACCCATGCTACATAGTAAGTACG 58.780 45.833 0.00 0.00 0.00 3.67
734 906 4.891756 ACCCATGCTACATAGTAAGTACGT 59.108 41.667 0.00 0.00 0.00 3.57
735 907 6.016860 CACCCATGCTACATAGTAAGTACGTA 60.017 42.308 0.00 0.00 0.00 3.57
736 908 6.016777 ACCCATGCTACATAGTAAGTACGTAC 60.017 42.308 18.10 18.10 0.00 3.67
743 915 8.768955 GCTACATAGTAAGTACGTACATACACT 58.231 37.037 31.37 24.84 33.99 3.55
764 936 1.375908 TGTGGATTCAGAGCCGCAC 60.376 57.895 4.06 0.00 46.19 5.34
766 938 1.078918 TGGATTCAGAGCCGCACAG 60.079 57.895 0.00 0.00 32.65 3.66
782 954 2.679450 CACAGGTGCATGTCAAATTGG 58.321 47.619 0.00 0.00 0.00 3.16
909 1095 4.907875 ACCATCACCACAGCTATATAACCT 59.092 41.667 0.00 0.00 0.00 3.50
948 1143 2.751166 TAAAGACAGGCTCTGCACTC 57.249 50.000 2.50 0.00 34.37 3.51
1050 1266 2.646175 GCTGTGGAGGAGGTACGCA 61.646 63.158 0.00 0.00 0.00 5.24
1213 1429 3.314635 CGCCTACTACCACGAGAAGTAAT 59.685 47.826 0.00 0.00 0.00 1.89
1214 1430 4.512944 CGCCTACTACCACGAGAAGTAATA 59.487 45.833 0.00 0.00 0.00 0.98
1216 1432 6.437094 GCCTACTACCACGAGAAGTAATAAG 58.563 44.000 0.00 0.00 0.00 1.73
1217 1433 6.437094 CCTACTACCACGAGAAGTAATAAGC 58.563 44.000 0.00 0.00 0.00 3.09
1224 1448 4.027295 CACGAGAAGTAATAAGCTCTTGCG 60.027 45.833 0.00 0.00 45.42 4.85
1241 1465 4.154015 TCTTGCGTTCATCAATTACACCAG 59.846 41.667 0.00 0.00 0.00 4.00
1274 1502 7.332678 CAGACTTTGGCGATATGATGATGAATA 59.667 37.037 0.00 0.00 0.00 1.75
1402 1669 8.794335 TGAGAAGAGTGCATATATACGTAGAT 57.206 34.615 7.96 7.96 0.00 1.98
1403 1670 8.669243 TGAGAAGAGTGCATATATACGTAGATG 58.331 37.037 12.86 10.90 33.64 2.90
1440 1707 2.821437 TCCTGAGAGGAAGTCGGATTT 58.179 47.619 0.00 0.00 42.51 2.17
1540 1807 2.927856 ACCGTGGCCTCCATCACA 60.928 61.111 3.32 0.00 35.28 3.58
1747 2017 4.785453 GCCTGGCTCAAGGGGTCG 62.785 72.222 12.43 0.00 37.84 4.79
1979 2249 4.400961 GCGCCTGCCCTTGTCTCT 62.401 66.667 0.00 0.00 33.98 3.10
1980 2250 2.125350 CGCCTGCCCTTGTCTCTC 60.125 66.667 0.00 0.00 0.00 3.20
1981 2251 2.654079 CGCCTGCCCTTGTCTCTCT 61.654 63.158 0.00 0.00 0.00 3.10
1982 2252 1.220477 GCCTGCCCTTGTCTCTCTC 59.780 63.158 0.00 0.00 0.00 3.20
1983 2253 1.548357 GCCTGCCCTTGTCTCTCTCA 61.548 60.000 0.00 0.00 0.00 3.27
1984 2254 0.536260 CCTGCCCTTGTCTCTCTCAG 59.464 60.000 0.00 0.00 0.00 3.35
1985 2255 1.554836 CTGCCCTTGTCTCTCTCAGA 58.445 55.000 0.00 0.00 0.00 3.27
1986 2256 2.109774 CTGCCCTTGTCTCTCTCAGAT 58.890 52.381 0.00 0.00 32.08 2.90
1987 2257 2.500910 CTGCCCTTGTCTCTCTCAGATT 59.499 50.000 0.00 0.00 32.08 2.40
1988 2258 3.703556 CTGCCCTTGTCTCTCTCAGATTA 59.296 47.826 0.00 0.00 32.08 1.75
1989 2259 4.293494 TGCCCTTGTCTCTCTCAGATTAT 58.707 43.478 0.00 0.00 32.08 1.28
1991 2261 5.899547 TGCCCTTGTCTCTCTCAGATTATTA 59.100 40.000 0.00 0.00 32.08 0.98
1992 2262 6.183360 TGCCCTTGTCTCTCTCAGATTATTAC 60.183 42.308 0.00 0.00 32.08 1.89
1994 2264 6.442952 CCTTGTCTCTCTCAGATTATTACCG 58.557 44.000 0.00 0.00 32.08 4.02
1995 2265 6.039941 CCTTGTCTCTCTCAGATTATTACCGT 59.960 42.308 0.00 0.00 32.08 4.83
1996 2266 6.621316 TGTCTCTCTCAGATTATTACCGTC 57.379 41.667 0.00 0.00 32.08 4.79
2007 2277 0.325016 ATTACCGTCTTCTCCCCCGT 60.325 55.000 0.00 0.00 0.00 5.28
2008 2278 0.967380 TTACCGTCTTCTCCCCCGTC 60.967 60.000 0.00 0.00 0.00 4.79
2009 2279 2.843912 TACCGTCTTCTCCCCCGTCC 62.844 65.000 0.00 0.00 0.00 4.79
2016 2286 2.365635 CTCCCCCGTCCTCCATGT 60.366 66.667 0.00 0.00 0.00 3.21
2054 2330 1.134075 CAGTGCTCATGAACTGCGC 59.866 57.895 13.25 11.72 42.37 6.09
2132 2414 0.957888 GGTGCACAGAGAAGAAGGGC 60.958 60.000 20.43 0.00 0.00 5.19
2267 2568 2.799371 GCATGCTTGCCTCTGCTC 59.201 61.111 11.37 0.00 43.38 4.26
2268 2569 2.044555 GCATGCTTGCCTCTGCTCA 61.045 57.895 11.37 0.00 43.38 4.26
2325 2626 0.318955 GCAACCTGGACACAACATGC 60.319 55.000 0.00 0.00 0.00 4.06
2404 2728 5.590259 ACCAGCCTAATTACTGTTGCTAATG 59.410 40.000 3.25 0.00 31.76 1.90
2407 2731 7.189512 CAGCCTAATTACTGTTGCTAATGAAC 58.810 38.462 0.00 0.00 0.00 3.18
2420 2765 4.065088 GCTAATGAACCAGCATAATCGGA 58.935 43.478 0.00 0.00 37.73 4.55
2594 2942 4.162690 GTCTCCTTGGCGCGGGAT 62.163 66.667 8.83 0.00 0.00 3.85
2636 2989 1.067213 GCGATGAGATAAGAGGAGGGC 60.067 57.143 0.00 0.00 0.00 5.19
2653 3006 1.509923 GCTCAGAATTGCCTGCCAC 59.490 57.895 0.00 0.00 34.28 5.01
2708 4270 1.881973 TCAATGGCTCTGCAGTTGTTC 59.118 47.619 14.67 5.96 0.00 3.18
2712 4274 1.071605 GGCTCTGCAGTTGTTCTACG 58.928 55.000 14.67 0.00 0.00 3.51
2714 4276 2.352421 GGCTCTGCAGTTGTTCTACGTA 60.352 50.000 14.67 0.00 0.00 3.57
2715 4277 2.662156 GCTCTGCAGTTGTTCTACGTAC 59.338 50.000 14.67 0.00 0.00 3.67
2717 4279 4.379186 GCTCTGCAGTTGTTCTACGTACTA 60.379 45.833 14.67 0.00 0.00 1.82
2718 4280 5.292671 TCTGCAGTTGTTCTACGTACTAG 57.707 43.478 14.67 0.00 0.00 2.57
2720 4282 5.934043 TCTGCAGTTGTTCTACGTACTAGTA 59.066 40.000 14.67 0.00 0.00 1.82
2721 4283 5.931532 TGCAGTTGTTCTACGTACTAGTAC 58.068 41.667 21.06 21.06 0.00 2.73
2722 4284 5.702670 TGCAGTTGTTCTACGTACTAGTACT 59.297 40.000 26.36 17.18 34.04 2.73
2724 4286 6.740453 GCAGTTGTTCTACGTACTAGTACTTC 59.260 42.308 26.36 9.52 34.04 3.01
2725 4287 7.360776 GCAGTTGTTCTACGTACTAGTACTTCT 60.361 40.741 26.36 13.58 34.04 2.85
2726 4288 8.502387 CAGTTGTTCTACGTACTAGTACTTCTT 58.498 37.037 26.36 12.97 34.04 2.52
2727 4289 9.061435 AGTTGTTCTACGTACTAGTACTTCTTT 57.939 33.333 26.36 10.91 34.04 2.52
2728 4290 9.111702 GTTGTTCTACGTACTAGTACTTCTTTG 57.888 37.037 26.36 14.52 34.04 2.77
2729 4291 8.383318 TGTTCTACGTACTAGTACTTCTTTGT 57.617 34.615 26.36 18.65 34.04 2.83
2730 4292 8.840321 TGTTCTACGTACTAGTACTTCTTTGTT 58.160 33.333 26.36 6.89 34.04 2.83
2731 4293 9.323963 GTTCTACGTACTAGTACTTCTTTGTTC 57.676 37.037 26.36 8.58 34.04 3.18
2732 4294 7.733608 TCTACGTACTAGTACTTCTTTGTTCG 58.266 38.462 26.36 14.06 34.04 3.95
2733 4295 6.545504 ACGTACTAGTACTTCTTTGTTCGA 57.454 37.500 26.36 0.00 34.04 3.71
2736 4298 7.589221 ACGTACTAGTACTTCTTTGTTCGAAAG 59.411 37.037 26.36 10.55 34.04 2.62
2832 4394 1.469703 GTTGCAGCATCAGTATGTGCA 59.530 47.619 0.00 9.82 42.73 4.57
2839 4401 4.392754 CAGCATCAGTATGTGCACTGTTTA 59.607 41.667 19.41 0.00 45.11 2.01
2840 4402 5.003160 AGCATCAGTATGTGCACTGTTTAA 58.997 37.500 19.41 0.00 45.11 1.52
2841 4403 5.088739 GCATCAGTATGTGCACTGTTTAAC 58.911 41.667 19.41 7.00 45.11 2.01
2842 4404 5.631026 CATCAGTATGTGCACTGTTTAACC 58.369 41.667 19.41 0.00 45.11 2.85
2843 4405 4.069304 TCAGTATGTGCACTGTTTAACCC 58.931 43.478 19.41 0.00 45.11 4.11
2844 4406 3.071479 AGTATGTGCACTGTTTAACCCG 58.929 45.455 19.41 0.00 0.00 5.28
2845 4407 0.596082 ATGTGCACTGTTTAACCCGC 59.404 50.000 19.41 0.00 0.00 6.13
2846 4408 0.748367 TGTGCACTGTTTAACCCGCA 60.748 50.000 19.41 0.00 0.00 5.69
2847 4409 0.382515 GTGCACTGTTTAACCCGCAA 59.617 50.000 10.32 0.00 0.00 4.85
2950 4512 6.618287 TGAACATAAGCATTTCCTATTCGG 57.382 37.500 0.00 0.00 0.00 4.30
2951 4513 6.353323 TGAACATAAGCATTTCCTATTCGGA 58.647 36.000 0.00 0.00 41.06 4.55
2975 4537 2.642427 TCAGACGCCGGTTATAGTACA 58.358 47.619 1.90 0.00 0.00 2.90
2980 4542 4.640201 AGACGCCGGTTATAGTACAAACTA 59.360 41.667 1.90 0.00 42.35 2.24
2985 4547 6.455513 CGCCGGTTATAGTACAAACTAAAACC 60.456 42.308 1.90 0.00 41.49 3.27
2988 4550 6.455513 CGGTTATAGTACAAACTAAAACCGGC 60.456 42.308 13.84 0.00 41.49 6.13
2989 4551 6.371271 GGTTATAGTACAAACTAAAACCGGCA 59.629 38.462 0.00 0.00 41.49 5.69
3001 4563 4.562425 CCGGCACACACACACCCT 62.562 66.667 0.00 0.00 0.00 4.34
3013 4575 0.250901 CACACCCTCCTTCACTTGGG 60.251 60.000 0.00 0.00 44.89 4.12
3020 4582 2.348998 CTTCACTTGGGCTCGGCT 59.651 61.111 0.00 0.00 0.00 5.52
3030 4592 0.178068 GGGCTCGGCTCATTTCACTA 59.822 55.000 0.00 0.00 0.00 2.74
3037 4599 5.560966 TCGGCTCATTTCACTATTTTTCC 57.439 39.130 0.00 0.00 0.00 3.13
3046 4608 8.504005 TCATTTCACTATTTTTCCTTCTTCGAC 58.496 33.333 0.00 0.00 0.00 4.20
3051 4613 3.963383 TTTTTCCTTCTTCGACAGCAC 57.037 42.857 0.00 0.00 0.00 4.40
3112 4674 0.187117 TGGCCAATGACCAACCAGAA 59.813 50.000 0.61 0.00 33.12 3.02
3245 4828 7.274447 TCTCAAATGCCTGAACTTTTTCAAAT 58.726 30.769 0.00 0.00 41.34 2.32
3246 4829 7.439056 TCTCAAATGCCTGAACTTTTTCAAATC 59.561 33.333 0.00 0.00 41.34 2.17
3247 4830 6.200665 TCAAATGCCTGAACTTTTTCAAATCG 59.799 34.615 0.00 0.00 41.34 3.34
3248 4831 4.909696 TGCCTGAACTTTTTCAAATCGA 57.090 36.364 0.00 0.00 41.34 3.59
3249 4832 4.858935 TGCCTGAACTTTTTCAAATCGAG 58.141 39.130 0.00 0.00 41.34 4.04
3250 4833 4.229876 GCCTGAACTTTTTCAAATCGAGG 58.770 43.478 0.00 0.00 41.34 4.63
3251 4834 4.261614 GCCTGAACTTTTTCAAATCGAGGT 60.262 41.667 0.00 0.00 41.34 3.85
3252 4835 5.452777 CCTGAACTTTTTCAAATCGAGGTC 58.547 41.667 0.00 0.00 41.34 3.85
3253 4836 5.239525 CCTGAACTTTTTCAAATCGAGGTCT 59.760 40.000 0.00 0.00 41.34 3.85
3409 4994 9.442047 TTGAAGAACTTTTTAGAAATTTGGCAA 57.558 25.926 0.00 0.00 0.00 4.52
3478 5063 5.638530 TTTTTGAGGGGGTAAAGCAAATT 57.361 34.783 0.00 0.00 0.00 1.82
3479 5064 5.638530 TTTTGAGGGGGTAAAGCAAATTT 57.361 34.783 0.00 0.00 34.72 1.82
3480 5065 6.749036 TTTTGAGGGGGTAAAGCAAATTTA 57.251 33.333 0.00 0.00 32.01 1.40
3481 5066 6.943899 TTTGAGGGGGTAAAGCAAATTTAT 57.056 33.333 0.00 0.00 35.83 1.40
3482 5067 6.943899 TTGAGGGGGTAAAGCAAATTTATT 57.056 33.333 0.00 0.00 35.83 1.40
3483 5068 6.538945 TGAGGGGGTAAAGCAAATTTATTC 57.461 37.500 0.00 0.00 35.83 1.75
3484 5069 6.019748 TGAGGGGGTAAAGCAAATTTATTCA 58.980 36.000 0.00 0.00 35.83 2.57
3485 5070 6.671779 TGAGGGGGTAAAGCAAATTTATTCAT 59.328 34.615 0.00 0.00 35.83 2.57
3486 5071 7.124573 AGGGGGTAAAGCAAATTTATTCATC 57.875 36.000 0.00 0.00 35.83 2.92
3487 5072 6.671779 AGGGGGTAAAGCAAATTTATTCATCA 59.328 34.615 0.00 0.00 35.83 3.07
3488 5073 7.181845 AGGGGGTAAAGCAAATTTATTCATCAA 59.818 33.333 0.00 0.00 35.83 2.57
3489 5074 7.826744 GGGGGTAAAGCAAATTTATTCATCAAA 59.173 33.333 0.00 0.00 35.83 2.69
3490 5075 9.225436 GGGGTAAAGCAAATTTATTCATCAAAA 57.775 29.630 0.00 0.00 35.83 2.44
3496 5081 9.504708 AAGCAAATTTATTCATCAAAATCCACA 57.495 25.926 0.00 0.00 0.00 4.17
3497 5082 9.158233 AGCAAATTTATTCATCAAAATCCACAG 57.842 29.630 0.00 0.00 0.00 3.66
3498 5083 9.153721 GCAAATTTATTCATCAAAATCCACAGA 57.846 29.630 0.00 0.00 0.00 3.41
3502 5087 8.868522 TTTATTCATCAAAATCCACAGAGAGT 57.131 30.769 0.00 0.00 0.00 3.24
3516 5101 5.605534 CACAGAGAGTGGGATACAATTAGG 58.394 45.833 0.00 0.00 44.69 2.69
3517 5102 4.656112 ACAGAGAGTGGGATACAATTAGGG 59.344 45.833 0.00 0.00 39.74 3.53
3518 5103 4.656112 CAGAGAGTGGGATACAATTAGGGT 59.344 45.833 0.00 0.00 39.74 4.34
3519 5104 5.131142 CAGAGAGTGGGATACAATTAGGGTT 59.869 44.000 0.00 0.00 39.74 4.11
3520 5105 5.131142 AGAGAGTGGGATACAATTAGGGTTG 59.869 44.000 0.00 0.00 39.74 3.77
3521 5106 4.788617 AGAGTGGGATACAATTAGGGTTGT 59.211 41.667 0.00 0.00 44.09 3.32
3522 5107 4.855340 AGTGGGATACAATTAGGGTTGTG 58.145 43.478 2.76 0.00 42.02 3.33
3523 5108 3.951680 GTGGGATACAATTAGGGTTGTGG 59.048 47.826 2.76 0.00 42.02 4.17
3524 5109 3.053245 TGGGATACAATTAGGGTTGTGGG 60.053 47.826 2.76 0.00 42.02 4.61
3525 5110 3.562182 GGATACAATTAGGGTTGTGGGG 58.438 50.000 2.76 0.00 42.02 4.96
3526 5111 2.517998 TACAATTAGGGTTGTGGGGC 57.482 50.000 2.76 0.00 42.02 5.80
3527 5112 0.783850 ACAATTAGGGTTGTGGGGCT 59.216 50.000 0.00 0.00 40.60 5.19
3528 5113 1.185315 CAATTAGGGTTGTGGGGCTG 58.815 55.000 0.00 0.00 0.00 4.85
3529 5114 0.041090 AATTAGGGTTGTGGGGCTGG 59.959 55.000 0.00 0.00 0.00 4.85
3530 5115 2.514516 ATTAGGGTTGTGGGGCTGGC 62.515 60.000 0.00 0.00 0.00 4.85
3533 5118 3.657350 GGTTGTGGGGCTGGCCTA 61.657 66.667 20.47 11.80 36.10 3.93
3534 5119 2.044946 GTTGTGGGGCTGGCCTAG 60.045 66.667 20.47 0.34 36.10 3.02
3546 5131 4.049393 GCCTAGCCAAGTATGCCG 57.951 61.111 0.00 0.00 0.00 5.69
3547 5132 2.254464 GCCTAGCCAAGTATGCCGC 61.254 63.158 0.00 0.00 0.00 6.53
3548 5133 1.598130 CCTAGCCAAGTATGCCGCC 60.598 63.158 0.00 0.00 0.00 6.13
3549 5134 1.598130 CTAGCCAAGTATGCCGCCC 60.598 63.158 0.00 0.00 0.00 6.13
3550 5135 3.114825 TAGCCAAGTATGCCGCCCC 62.115 63.158 0.00 0.00 0.00 5.80
3564 5149 2.772622 CCCCGGGCCTCTACCAAT 60.773 66.667 17.73 0.00 0.00 3.16
3565 5150 1.460689 CCCCGGGCCTCTACCAATA 60.461 63.158 17.73 0.00 0.00 1.90
3566 5151 1.481056 CCCCGGGCCTCTACCAATAG 61.481 65.000 17.73 0.00 0.00 1.73
3567 5152 1.371558 CCGGGCCTCTACCAATAGC 59.628 63.158 0.84 0.00 0.00 2.97
3568 5153 1.407656 CCGGGCCTCTACCAATAGCA 61.408 60.000 0.84 0.00 0.00 3.49
3569 5154 0.468226 CGGGCCTCTACCAATAGCAA 59.532 55.000 0.84 0.00 0.00 3.91
3570 5155 1.134220 CGGGCCTCTACCAATAGCAAA 60.134 52.381 0.84 0.00 0.00 3.68
3571 5156 2.487265 CGGGCCTCTACCAATAGCAAAT 60.487 50.000 0.84 0.00 0.00 2.32
3572 5157 3.149981 GGGCCTCTACCAATAGCAAATC 58.850 50.000 0.84 0.00 0.00 2.17
3573 5158 3.181439 GGGCCTCTACCAATAGCAAATCT 60.181 47.826 0.84 0.00 0.00 2.40
3574 5159 4.041691 GGGCCTCTACCAATAGCAAATCTA 59.958 45.833 0.84 0.00 0.00 1.98
3575 5160 5.241662 GGCCTCTACCAATAGCAAATCTAG 58.758 45.833 0.00 0.00 0.00 2.43
3576 5161 4.693095 GCCTCTACCAATAGCAAATCTAGC 59.307 45.833 0.00 0.00 0.00 3.42
3577 5162 5.512232 GCCTCTACCAATAGCAAATCTAGCT 60.512 44.000 0.00 0.00 45.77 3.32
3579 5164 7.671302 CCTCTACCAATAGCAAATCTAGCTAA 58.329 38.462 0.00 0.00 46.55 3.09
3580 5165 7.816995 CCTCTACCAATAGCAAATCTAGCTAAG 59.183 40.741 0.00 0.00 46.55 2.18
3581 5166 7.155328 TCTACCAATAGCAAATCTAGCTAAGC 58.845 38.462 0.00 0.00 46.55 3.09
3582 5167 5.934781 ACCAATAGCAAATCTAGCTAAGCT 58.065 37.500 0.00 2.54 46.55 3.74
3583 5168 7.067496 ACCAATAGCAAATCTAGCTAAGCTA 57.933 36.000 11.44 11.44 46.55 3.32
3584 5169 7.684529 ACCAATAGCAAATCTAGCTAAGCTAT 58.315 34.615 13.86 13.86 46.55 2.97
3585 5170 7.605691 ACCAATAGCAAATCTAGCTAAGCTATG 59.394 37.037 17.55 12.08 46.55 2.23
3586 5171 7.605691 CCAATAGCAAATCTAGCTAAGCTATGT 59.394 37.037 17.55 10.06 46.55 2.29
3587 5172 8.441608 CAATAGCAAATCTAGCTAAGCTATGTG 58.558 37.037 17.55 14.70 46.55 3.21
3588 5173 4.754114 AGCAAATCTAGCTAAGCTATGTGC 59.246 41.667 10.22 10.22 40.54 4.57
3589 5174 5.454471 AGCAAATCTAGCTAAGCTATGTGCT 60.454 40.000 13.22 13.22 44.33 4.40
3601 5186 4.907879 GCTATGTGCTTCCTTATTTGCT 57.092 40.909 0.00 0.00 38.95 3.91
3602 5187 4.604976 GCTATGTGCTTCCTTATTTGCTG 58.395 43.478 0.00 0.00 38.95 4.41
3603 5188 3.515330 ATGTGCTTCCTTATTTGCTGC 57.485 42.857 0.00 0.00 0.00 5.25
3604 5189 2.237643 TGTGCTTCCTTATTTGCTGCA 58.762 42.857 0.00 0.00 0.00 4.41
3605 5190 2.030007 TGTGCTTCCTTATTTGCTGCAC 60.030 45.455 0.00 0.00 46.26 4.57
3606 5191 1.199789 TGCTTCCTTATTTGCTGCACG 59.800 47.619 0.00 0.00 0.00 5.34
3607 5192 1.468520 GCTTCCTTATTTGCTGCACGA 59.531 47.619 0.00 0.00 0.00 4.35
3608 5193 2.729156 GCTTCCTTATTTGCTGCACGAC 60.729 50.000 0.00 0.00 0.00 4.34
3609 5194 1.448985 TCCTTATTTGCTGCACGACC 58.551 50.000 0.00 0.00 0.00 4.79
3610 5195 1.003118 TCCTTATTTGCTGCACGACCT 59.997 47.619 0.00 0.00 0.00 3.85
3611 5196 1.812571 CCTTATTTGCTGCACGACCTT 59.187 47.619 0.00 0.00 0.00 3.50
3612 5197 2.159517 CCTTATTTGCTGCACGACCTTC 60.160 50.000 0.00 0.00 0.00 3.46
3613 5198 2.177394 TATTTGCTGCACGACCTTCA 57.823 45.000 0.00 0.00 0.00 3.02
3614 5199 1.317613 ATTTGCTGCACGACCTTCAA 58.682 45.000 0.00 0.00 0.00 2.69
3615 5200 1.098869 TTTGCTGCACGACCTTCAAA 58.901 45.000 0.00 0.00 0.00 2.69
3616 5201 1.098869 TTGCTGCACGACCTTCAAAA 58.901 45.000 0.00 0.00 0.00 2.44
3617 5202 0.662619 TGCTGCACGACCTTCAAAAG 59.337 50.000 0.00 0.00 0.00 2.27
3618 5203 0.663153 GCTGCACGACCTTCAAAAGT 59.337 50.000 0.00 0.00 0.00 2.66
3619 5204 1.871039 GCTGCACGACCTTCAAAAGTA 59.129 47.619 0.00 0.00 0.00 2.24
3620 5205 2.289547 GCTGCACGACCTTCAAAAGTAA 59.710 45.455 0.00 0.00 0.00 2.24
3621 5206 3.242936 GCTGCACGACCTTCAAAAGTAAA 60.243 43.478 0.00 0.00 0.00 2.01
3622 5207 4.556699 GCTGCACGACCTTCAAAAGTAAAT 60.557 41.667 0.00 0.00 0.00 1.40
3623 5208 5.508200 TGCACGACCTTCAAAAGTAAATT 57.492 34.783 0.00 0.00 0.00 1.82
3624 5209 5.897050 TGCACGACCTTCAAAAGTAAATTT 58.103 33.333 0.00 0.00 0.00 1.82
3625 5210 7.028926 TGCACGACCTTCAAAAGTAAATTTA 57.971 32.000 0.00 0.00 0.00 1.40
3626 5211 6.913673 TGCACGACCTTCAAAAGTAAATTTAC 59.086 34.615 18.77 18.77 0.00 2.01
3627 5212 6.913673 GCACGACCTTCAAAAGTAAATTTACA 59.086 34.615 26.06 6.22 36.12 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.153475 GGTAAATCAGCTGCGTAAAACTCA 59.847 41.667 9.47 0.00 0.00 3.41
28 29 2.750712 GGGGTAAATCAGCTGCGTAAAA 59.249 45.455 9.47 0.00 0.00 1.52
46 47 0.680921 ATCGGTGCATGACAAAGGGG 60.681 55.000 0.00 0.00 0.00 4.79
52 53 0.832626 ATCCTCATCGGTGCATGACA 59.167 50.000 0.00 0.00 0.00 3.58
64 65 2.941064 CGTGTCAAATGCTCATCCTCAT 59.059 45.455 0.00 0.00 0.00 2.90
65 66 2.028203 TCGTGTCAAATGCTCATCCTCA 60.028 45.455 0.00 0.00 0.00 3.86
66 67 2.621338 TCGTGTCAAATGCTCATCCTC 58.379 47.619 0.00 0.00 0.00 3.71
67 68 2.768253 TCGTGTCAAATGCTCATCCT 57.232 45.000 0.00 0.00 0.00 3.24
68 69 3.426695 CCTTTCGTGTCAAATGCTCATCC 60.427 47.826 0.00 0.00 0.00 3.51
69 70 3.436704 TCCTTTCGTGTCAAATGCTCATC 59.563 43.478 0.00 0.00 0.00 2.92
110 111 2.381752 ACATTAAATAGCAGGGCCCC 57.618 50.000 21.43 3.37 0.00 5.80
126 127 7.809665 AGTAAACCGTAATAAAGCGAAAACAT 58.190 30.769 0.00 0.00 0.00 2.71
291 295 6.183360 GGAAAATAGGATCGCCTTGAAATCAA 60.183 38.462 0.00 0.00 43.90 2.57
292 296 5.299279 GGAAAATAGGATCGCCTTGAAATCA 59.701 40.000 0.00 0.00 43.90 2.57
293 297 5.560953 CGGAAAATAGGATCGCCTTGAAATC 60.561 44.000 0.00 0.00 43.90 2.17
294 298 4.275936 CGGAAAATAGGATCGCCTTGAAAT 59.724 41.667 0.00 0.00 43.90 2.17
295 299 3.625764 CGGAAAATAGGATCGCCTTGAAA 59.374 43.478 0.00 0.00 43.90 2.69
311 315 2.093394 TCTGTTCAGGTGTCACGGAAAA 60.093 45.455 9.49 4.97 0.00 2.29
315 319 0.104120 TGTCTGTTCAGGTGTCACGG 59.896 55.000 0.00 0.00 0.00 4.94
342 346 1.205893 GATCGAGGCAGTCTGAGGTTT 59.794 52.381 3.32 0.00 0.00 3.27
346 350 1.680207 TCATGATCGAGGCAGTCTGAG 59.320 52.381 3.32 0.00 0.00 3.35
349 353 1.680735 GACTCATGATCGAGGCAGTCT 59.319 52.381 0.00 0.00 41.08 3.24
393 410 2.743636 AACCTACCATCTGTGACACG 57.256 50.000 0.22 0.00 0.00 4.49
401 418 4.097589 GTCGTGCTACTTAACCTACCATCT 59.902 45.833 0.00 0.00 0.00 2.90
414 431 3.512680 GTGCAGAAATAGTCGTGCTACT 58.487 45.455 0.00 0.00 36.84 2.57
421 438 0.294887 GTCGCGTGCAGAAATAGTCG 59.705 55.000 5.77 0.00 0.00 4.18
423 440 1.459592 GTTGTCGCGTGCAGAAATAGT 59.540 47.619 5.77 0.00 0.00 2.12
430 447 1.340657 GAGAGAGTTGTCGCGTGCAG 61.341 60.000 5.77 0.00 0.00 4.41
431 448 1.371758 GAGAGAGTTGTCGCGTGCA 60.372 57.895 5.77 3.73 0.00 4.57
432 449 1.068287 GAGAGAGAGTTGTCGCGTGC 61.068 60.000 5.77 0.57 0.00 5.34
433 450 0.519519 AGAGAGAGAGTTGTCGCGTG 59.480 55.000 5.77 0.00 0.00 5.34
435 452 1.062002 GAGAGAGAGAGAGTTGTCGCG 59.938 57.143 0.00 0.00 0.00 5.87
436 453 2.351726 GAGAGAGAGAGAGAGTTGTCGC 59.648 54.545 0.00 0.00 0.00 5.19
437 454 3.861840 AGAGAGAGAGAGAGAGTTGTCG 58.138 50.000 0.00 0.00 0.00 4.35
438 455 5.091261 AGAGAGAGAGAGAGAGAGTTGTC 57.909 47.826 0.00 0.00 0.00 3.18
439 456 4.780021 AGAGAGAGAGAGAGAGAGAGTTGT 59.220 45.833 0.00 0.00 0.00 3.32
440 457 5.128499 AGAGAGAGAGAGAGAGAGAGAGTTG 59.872 48.000 0.00 0.00 0.00 3.16
441 458 5.276440 AGAGAGAGAGAGAGAGAGAGAGTT 58.724 45.833 0.00 0.00 0.00 3.01
443 460 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
444 461 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
445 462 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
446 463 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
447 464 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
448 465 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
449 466 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
450 467 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
451 468 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
452 469 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
453 470 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
454 471 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
455 472 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
456 473 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
457 474 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
458 475 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
459 476 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
460 477 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
461 478 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
462 479 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
463 480 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
464 481 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
465 482 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
466 483 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
467 484 4.501229 GCAGAGAGAGAGAGAGAGAGAGAG 60.501 54.167 0.00 0.00 0.00 3.20
468 485 3.386078 GCAGAGAGAGAGAGAGAGAGAGA 59.614 52.174 0.00 0.00 0.00 3.10
469 486 3.133542 TGCAGAGAGAGAGAGAGAGAGAG 59.866 52.174 0.00 0.00 0.00 3.20
470 487 3.106827 TGCAGAGAGAGAGAGAGAGAGA 58.893 50.000 0.00 0.00 0.00 3.10
471 488 3.548745 TGCAGAGAGAGAGAGAGAGAG 57.451 52.381 0.00 0.00 0.00 3.20
472 489 4.508551 AATGCAGAGAGAGAGAGAGAGA 57.491 45.455 0.00 0.00 0.00 3.10
473 490 4.641541 TGAAATGCAGAGAGAGAGAGAGAG 59.358 45.833 0.00 0.00 0.00 3.20
474 491 4.598022 TGAAATGCAGAGAGAGAGAGAGA 58.402 43.478 0.00 0.00 0.00 3.10
475 492 4.987408 TGAAATGCAGAGAGAGAGAGAG 57.013 45.455 0.00 0.00 0.00 3.20
476 493 5.890419 TGTATGAAATGCAGAGAGAGAGAGA 59.110 40.000 0.00 0.00 32.63 3.10
477 494 5.978919 GTGTATGAAATGCAGAGAGAGAGAG 59.021 44.000 0.00 0.00 40.43 3.20
478 495 5.655974 AGTGTATGAAATGCAGAGAGAGAGA 59.344 40.000 0.00 0.00 40.43 3.10
479 496 5.749588 CAGTGTATGAAATGCAGAGAGAGAG 59.250 44.000 0.00 0.00 40.43 3.20
480 497 5.420104 TCAGTGTATGAAATGCAGAGAGAGA 59.580 40.000 0.00 0.00 40.43 3.10
494 511 8.146412 CCAATCATTAGAGATGTCAGTGTATGA 58.854 37.037 0.00 0.00 34.79 2.15
526 543 2.998772 ACAAAACAGTAGCGCAATGTG 58.001 42.857 11.47 3.59 0.00 3.21
531 548 2.159310 AGCAAAACAAAACAGTAGCGCA 60.159 40.909 11.47 0.00 0.00 6.09
533 550 3.857093 ACAAGCAAAACAAAACAGTAGCG 59.143 39.130 0.00 0.00 0.00 4.26
534 551 4.625311 ACACAAGCAAAACAAAACAGTAGC 59.375 37.500 0.00 0.00 0.00 3.58
613 772 4.749598 CAGTGCCCAAAAAGAATGGTTAAC 59.250 41.667 0.00 0.00 36.14 2.01
636 799 1.967319 TGGTCAGAACTTTGGCTGTC 58.033 50.000 0.00 0.00 33.90 3.51
639 802 2.430694 GGTTTTGGTCAGAACTTTGGCT 59.569 45.455 4.73 0.00 0.00 4.75
640 803 2.798145 CGGTTTTGGTCAGAACTTTGGC 60.798 50.000 4.73 0.00 0.00 4.52
641 804 2.685897 TCGGTTTTGGTCAGAACTTTGG 59.314 45.455 4.73 0.00 0.00 3.28
642 805 3.127895 TGTCGGTTTTGGTCAGAACTTTG 59.872 43.478 4.73 0.00 0.00 2.77
643 806 3.349022 TGTCGGTTTTGGTCAGAACTTT 58.651 40.909 4.73 0.00 0.00 2.66
645 808 2.561569 CTGTCGGTTTTGGTCAGAACT 58.438 47.619 4.73 0.00 0.00 3.01
646 809 1.002792 GCTGTCGGTTTTGGTCAGAAC 60.003 52.381 0.00 0.00 0.00 3.01
647 810 1.305201 GCTGTCGGTTTTGGTCAGAA 58.695 50.000 0.00 0.00 0.00 3.02
706 870 2.643551 ACTATGTAGCATGGGTGTTGC 58.356 47.619 0.00 0.00 40.45 4.17
712 884 5.449107 ACGTACTTACTATGTAGCATGGG 57.551 43.478 0.00 0.00 0.00 4.00
720 892 8.950210 ACAAGTGTATGTACGTACTTACTATGT 58.050 33.333 33.63 30.30 37.57 2.29
723 895 8.229811 CACACAAGTGTATGTACGTACTTACTA 58.770 37.037 33.63 23.91 42.83 1.82
725 897 6.306356 CCACACAAGTGTATGTACGTACTTAC 59.694 42.308 30.46 30.46 44.39 2.34
726 898 6.206438 TCCACACAAGTGTATGTACGTACTTA 59.794 38.462 25.12 19.93 44.39 2.24
727 899 5.009911 TCCACACAAGTGTATGTACGTACTT 59.990 40.000 25.12 20.94 44.39 2.24
729 901 4.797471 TCCACACAAGTGTATGTACGTAC 58.203 43.478 18.90 18.90 44.39 3.67
730 902 5.648178 ATCCACACAAGTGTATGTACGTA 57.352 39.130 5.41 0.00 44.39 3.57
731 903 4.530710 ATCCACACAAGTGTATGTACGT 57.469 40.909 5.41 0.00 44.39 3.57
732 904 4.926832 TGAATCCACACAAGTGTATGTACG 59.073 41.667 5.41 0.00 44.39 3.67
733 905 6.163476 TCTGAATCCACACAAGTGTATGTAC 58.837 40.000 5.41 0.00 44.39 2.90
734 906 6.353404 TCTGAATCCACACAAGTGTATGTA 57.647 37.500 5.41 0.00 44.39 2.29
735 907 5.227569 TCTGAATCCACACAAGTGTATGT 57.772 39.130 5.41 0.00 44.39 2.29
736 908 4.093998 GCTCTGAATCCACACAAGTGTATG 59.906 45.833 5.41 0.96 44.39 2.39
743 915 0.955428 GCGGCTCTGAATCCACACAA 60.955 55.000 0.00 0.00 0.00 3.33
763 935 2.297033 GTCCAATTTGACATGCACCTGT 59.703 45.455 4.84 0.00 35.29 4.00
764 936 2.669113 CGTCCAATTTGACATGCACCTG 60.669 50.000 10.04 0.00 34.88 4.00
766 938 1.981254 CGTCCAATTTGACATGCACC 58.019 50.000 10.04 0.00 34.88 5.01
790 962 3.067091 CTCCACCTGAGCAGCAGT 58.933 61.111 0.00 0.00 43.33 4.40
877 1063 0.890542 GTGGTGATGGTGAAGCAGCA 60.891 55.000 1.55 1.55 45.85 4.41
878 1064 0.890542 TGTGGTGATGGTGAAGCAGC 60.891 55.000 0.00 0.00 0.00 5.25
924 1115 5.560724 AGTGCAGAGCCTGTCTTTATAAAA 58.439 37.500 0.00 0.00 30.64 1.52
948 1143 0.457853 TGGATCGAAGAAGAACGCCG 60.458 55.000 0.00 0.00 43.58 6.46
1027 1243 2.856039 TACCTCCTCCACAGCCCTCG 62.856 65.000 0.00 0.00 0.00 4.63
1050 1266 2.112380 TGATCATCATGTTGTGCGGT 57.888 45.000 3.76 0.00 0.00 5.68
1213 1429 5.641636 TGTAATTGATGAACGCAAGAGCTTA 59.358 36.000 0.00 0.00 43.62 3.09
1214 1430 4.455533 TGTAATTGATGAACGCAAGAGCTT 59.544 37.500 0.00 0.00 43.62 3.74
1216 1432 4.091424 GTGTAATTGATGAACGCAAGAGC 58.909 43.478 0.00 0.00 43.62 4.09
1217 1433 4.154015 TGGTGTAATTGATGAACGCAAGAG 59.846 41.667 0.00 0.00 43.62 2.85
1224 1448 6.599244 TGAATCTCCTGGTGTAATTGATGAAC 59.401 38.462 0.00 0.00 0.00 3.18
1241 1465 2.386661 TCGCCAAAGTCTGAATCTCC 57.613 50.000 0.00 0.00 0.00 3.71
1274 1502 2.363680 TGACGCCCAAAAATGAACACAT 59.636 40.909 0.00 0.00 0.00 3.21
1373 1625 2.522836 ATATGCACTCTTCTCAGCGG 57.477 50.000 0.00 0.00 0.00 5.52
1402 1669 6.211384 TCTCAGGATCACTAGACAAATGTTCA 59.789 38.462 0.00 0.00 0.00 3.18
1403 1670 6.634805 TCTCAGGATCACTAGACAAATGTTC 58.365 40.000 0.00 0.00 0.00 3.18
1413 1680 3.563808 CGACTTCCTCTCAGGATCACTAG 59.436 52.174 0.00 0.00 45.34 2.57
1434 1701 0.109132 GCTCACCCTGCAAAAATCCG 60.109 55.000 0.00 0.00 0.00 4.18
1435 1702 1.260544 AGCTCACCCTGCAAAAATCC 58.739 50.000 0.00 0.00 0.00 3.01
1436 1703 2.297033 TCAAGCTCACCCTGCAAAAATC 59.703 45.455 0.00 0.00 0.00 2.17
1440 1707 0.823356 GGTCAAGCTCACCCTGCAAA 60.823 55.000 3.74 0.00 0.00 3.68
1540 1807 3.630204 GCGATGGCGATGACGAAT 58.370 55.556 0.00 0.00 42.66 3.34
1727 1997 4.351054 CCCCTTGAGCCAGGCGTT 62.351 66.667 5.55 0.00 31.69 4.84
1979 2249 5.535406 GGGAGAAGACGGTAATAATCTGAGA 59.465 44.000 0.00 0.00 0.00 3.27
1980 2250 5.279056 GGGGAGAAGACGGTAATAATCTGAG 60.279 48.000 0.00 0.00 0.00 3.35
1981 2251 4.587684 GGGGAGAAGACGGTAATAATCTGA 59.412 45.833 0.00 0.00 0.00 3.27
1982 2252 4.262506 GGGGGAGAAGACGGTAATAATCTG 60.263 50.000 0.00 0.00 0.00 2.90
1983 2253 3.902467 GGGGGAGAAGACGGTAATAATCT 59.098 47.826 0.00 0.00 0.00 2.40
1984 2254 3.305881 CGGGGGAGAAGACGGTAATAATC 60.306 52.174 0.00 0.00 0.00 1.75
1985 2255 2.631545 CGGGGGAGAAGACGGTAATAAT 59.368 50.000 0.00 0.00 0.00 1.28
1986 2256 2.034124 CGGGGGAGAAGACGGTAATAA 58.966 52.381 0.00 0.00 0.00 1.40
1987 2257 1.063717 ACGGGGGAGAAGACGGTAATA 60.064 52.381 0.00 0.00 0.00 0.98
1988 2258 0.325016 ACGGGGGAGAAGACGGTAAT 60.325 55.000 0.00 0.00 0.00 1.89
1989 2259 0.967380 GACGGGGGAGAAGACGGTAA 60.967 60.000 0.00 0.00 0.00 2.85
1991 2261 2.679287 GACGGGGGAGAAGACGGT 60.679 66.667 0.00 0.00 0.00 4.83
1992 2262 3.459063 GGACGGGGGAGAAGACGG 61.459 72.222 0.00 0.00 0.00 4.79
1994 2264 2.059190 GGAGGACGGGGGAGAAGAC 61.059 68.421 0.00 0.00 0.00 3.01
1995 2265 1.886730 ATGGAGGACGGGGGAGAAGA 61.887 60.000 0.00 0.00 0.00 2.87
1996 2266 1.383248 ATGGAGGACGGGGGAGAAG 60.383 63.158 0.00 0.00 0.00 2.85
2007 2277 0.977627 ATGGCGAGTGACATGGAGGA 60.978 55.000 0.00 0.00 44.17 3.71
2008 2278 1.524002 ATGGCGAGTGACATGGAGG 59.476 57.895 0.00 0.00 44.17 4.30
2016 2286 0.811219 GCTACATGCATGGCGAGTGA 60.811 55.000 29.41 5.80 42.31 3.41
2120 2402 2.122954 ACGGGGCCCTTCTTCTCT 59.877 61.111 24.38 0.00 0.00 3.10
2257 2558 1.004080 GTTGAGCTGAGCAGAGGCA 60.004 57.895 7.39 0.00 44.61 4.75
2260 2561 3.551082 CGATTTAGTTGAGCTGAGCAGAG 59.449 47.826 7.39 0.00 0.00 3.35
2261 2562 3.515630 CGATTTAGTTGAGCTGAGCAGA 58.484 45.455 7.39 0.00 0.00 4.26
2262 2563 2.606725 CCGATTTAGTTGAGCTGAGCAG 59.393 50.000 7.39 0.00 0.00 4.24
2264 2565 2.349886 CACCGATTTAGTTGAGCTGAGC 59.650 50.000 0.00 0.00 0.00 4.26
2265 2566 2.349886 GCACCGATTTAGTTGAGCTGAG 59.650 50.000 0.00 0.00 0.00 3.35
2266 2567 2.028112 AGCACCGATTTAGTTGAGCTGA 60.028 45.455 0.00 0.00 0.00 4.26
2267 2568 2.349886 GAGCACCGATTTAGTTGAGCTG 59.650 50.000 0.00 0.00 0.00 4.24
2268 2569 2.622436 GAGCACCGATTTAGTTGAGCT 58.378 47.619 0.00 0.00 0.00 4.09
2404 2728 2.103263 ACTCCTCCGATTATGCTGGTTC 59.897 50.000 0.00 0.00 0.00 3.62
2407 2731 1.270518 CCACTCCTCCGATTATGCTGG 60.271 57.143 0.00 0.00 0.00 4.85
2420 2765 0.911525 CCAGGATGACCACCACTCCT 60.912 60.000 0.00 0.00 39.69 3.69
2528 2876 0.529555 GCTTCTCGCAGTCCAGATCC 60.530 60.000 0.00 0.00 38.92 3.36
2590 2938 1.556911 TCTGTTCTTCTGAGCCATCCC 59.443 52.381 0.00 0.00 0.00 3.85
2594 2942 1.423584 TGGTCTGTTCTTCTGAGCCA 58.576 50.000 0.00 0.00 40.24 4.75
2596 2944 2.421619 CCTTGGTCTGTTCTTCTGAGC 58.578 52.381 0.00 0.00 40.96 4.26
2600 2948 1.048601 TCGCCTTGGTCTGTTCTTCT 58.951 50.000 0.00 0.00 0.00 2.85
2636 2989 0.609957 TGGTGGCAGGCAATTCTGAG 60.610 55.000 0.00 0.00 36.93 3.35
2662 3015 2.383527 CGCTTCTTCTGGACGGCAC 61.384 63.158 0.00 0.00 0.00 5.01
2687 4237 2.211250 ACAACTGCAGAGCCATTGAT 57.789 45.000 23.35 2.38 0.00 2.57
2689 4239 1.884579 AGAACAACTGCAGAGCCATTG 59.115 47.619 23.35 16.20 0.00 2.82
2708 4270 7.733608 TCGAACAAAGAAGTACTAGTACGTAG 58.266 38.462 23.87 14.80 40.80 3.51
2712 4274 9.455847 TTCTTTCGAACAAAGAAGTACTAGTAC 57.544 33.333 23.03 23.03 40.25 2.73
2714 4276 8.815189 GTTTCTTTCGAACAAAGAAGTACTAGT 58.185 33.333 9.93 0.00 44.22 2.57
2715 4277 8.814235 TGTTTCTTTCGAACAAAGAAGTACTAG 58.186 33.333 9.93 0.00 44.22 2.57
2717 4279 7.118680 TGTGTTTCTTTCGAACAAAGAAGTACT 59.881 33.333 17.85 0.00 44.22 2.73
2718 4280 7.238571 TGTGTTTCTTTCGAACAAAGAAGTAC 58.761 34.615 9.93 12.27 44.22 2.73
2720 4282 6.249035 TGTGTTTCTTTCGAACAAAGAAGT 57.751 33.333 9.93 0.00 44.22 3.01
2721 4283 7.740519 ATTGTGTTTCTTTCGAACAAAGAAG 57.259 32.000 9.93 0.00 44.22 2.85
2722 4284 8.026607 AGAATTGTGTTTCTTTCGAACAAAGAA 58.973 29.630 6.67 6.67 42.53 2.52
2724 4286 7.273381 ACAGAATTGTGTTTCTTTCGAACAAAG 59.727 33.333 1.68 0.00 35.83 2.77
2725 4287 7.087639 ACAGAATTGTGTTTCTTTCGAACAAA 58.912 30.769 1.68 0.00 35.83 2.83
2726 4288 6.616947 ACAGAATTGTGTTTCTTTCGAACAA 58.383 32.000 1.68 0.00 35.83 2.83
2727 4289 6.189677 ACAGAATTGTGTTTCTTTCGAACA 57.810 33.333 1.68 0.00 35.83 3.18
2728 4290 7.407337 ACTACAGAATTGTGTTTCTTTCGAAC 58.593 34.615 14.05 0.00 38.23 3.95
2729 4291 7.548196 ACTACAGAATTGTGTTTCTTTCGAA 57.452 32.000 14.05 0.00 38.23 3.71
2730 4292 7.279090 TCAACTACAGAATTGTGTTTCTTTCGA 59.721 33.333 14.05 0.04 38.23 3.71
2731 4293 7.406553 TCAACTACAGAATTGTGTTTCTTTCG 58.593 34.615 14.05 0.00 38.23 3.46
2732 4294 9.387123 GATCAACTACAGAATTGTGTTTCTTTC 57.613 33.333 14.05 1.79 38.23 2.62
2733 4295 8.070171 CGATCAACTACAGAATTGTGTTTCTTT 58.930 33.333 14.05 0.00 38.23 2.52
2736 4298 6.792250 CACGATCAACTACAGAATTGTGTTTC 59.208 38.462 14.05 1.99 38.23 2.78
2950 4512 0.175073 ATAACCGGCGTCTGAAGGTC 59.825 55.000 6.01 0.00 35.68 3.85
2951 4513 1.407979 CTATAACCGGCGTCTGAAGGT 59.592 52.381 6.01 0.00 38.88 3.50
2975 4537 2.093106 TGTGTGTGCCGGTTTTAGTTT 58.907 42.857 1.90 0.00 0.00 2.66
2980 4542 1.509004 GTGTGTGTGTGCCGGTTTT 59.491 52.632 1.90 0.00 0.00 2.43
2985 4547 2.972505 GAGGGTGTGTGTGTGCCG 60.973 66.667 0.00 0.00 0.00 5.69
2988 4550 0.180171 TGAAGGAGGGTGTGTGTGTG 59.820 55.000 0.00 0.00 0.00 3.82
2989 4551 0.180406 GTGAAGGAGGGTGTGTGTGT 59.820 55.000 0.00 0.00 0.00 3.72
3001 4563 3.068881 CCGAGCCCAAGTGAAGGA 58.931 61.111 0.00 0.00 0.00 3.36
3013 4575 4.622701 AAAATAGTGAAATGAGCCGAGC 57.377 40.909 0.00 0.00 0.00 5.03
3020 4582 8.504005 GTCGAAGAAGGAAAAATAGTGAAATGA 58.496 33.333 0.00 0.00 39.69 2.57
3030 4592 3.882888 TGTGCTGTCGAAGAAGGAAAAAT 59.117 39.130 0.00 0.00 39.69 1.82
3037 4599 0.320247 AGGCTGTGCTGTCGAAGAAG 60.320 55.000 0.00 0.00 39.69 2.85
3046 4608 2.357881 TTCGCTCAGGCTGTGCTG 60.358 61.111 31.39 25.15 34.97 4.41
3051 4613 2.811317 GGTCGTTCGCTCAGGCTG 60.811 66.667 8.58 8.58 36.09 4.85
3092 4654 0.187117 TCTGGTTGGTCATTGGCCAA 59.813 50.000 23.00 23.00 43.04 4.52
3097 4659 4.463539 TCCATCAATTCTGGTTGGTCATTG 59.536 41.667 3.99 0.00 35.19 2.82
3107 4669 8.102047 AGCTTATAGAATCTCCATCAATTCTGG 58.898 37.037 7.65 0.00 41.22 3.86
3230 4813 6.305693 AGACCTCGATTTGAAAAAGTTCAG 57.694 37.500 0.00 0.00 44.49 3.02
3406 4991 9.650371 GGAATTTCATTTTTGTAGAAAAGTTGC 57.350 29.630 0.00 0.00 35.20 4.17
3460 5045 6.019748 TGAATAAATTTGCTTTACCCCCTCA 58.980 36.000 0.00 0.00 32.23 3.86
3461 5046 6.538945 TGAATAAATTTGCTTTACCCCCTC 57.461 37.500 0.00 0.00 32.23 4.30
3462 5047 6.671779 TGATGAATAAATTTGCTTTACCCCCT 59.328 34.615 0.00 0.00 32.23 4.79
3463 5048 6.883744 TGATGAATAAATTTGCTTTACCCCC 58.116 36.000 0.00 0.00 32.23 5.40
3464 5049 8.785329 TTTGATGAATAAATTTGCTTTACCCC 57.215 30.769 0.00 0.00 32.23 4.95
3470 5055 9.504708 TGTGGATTTTGATGAATAAATTTGCTT 57.495 25.926 0.00 0.00 0.00 3.91
3471 5056 9.158233 CTGTGGATTTTGATGAATAAATTTGCT 57.842 29.630 0.00 0.00 0.00 3.91
3472 5057 9.153721 TCTGTGGATTTTGATGAATAAATTTGC 57.846 29.630 0.00 0.00 0.00 3.68
3476 5061 9.471702 ACTCTCTGTGGATTTTGATGAATAAAT 57.528 29.630 0.00 0.00 0.00 1.40
3477 5062 8.733458 CACTCTCTGTGGATTTTGATGAATAAA 58.267 33.333 0.00 0.00 42.68 1.40
3478 5063 8.272545 CACTCTCTGTGGATTTTGATGAATAA 57.727 34.615 0.00 0.00 42.68 1.40
3479 5064 7.854557 CACTCTCTGTGGATTTTGATGAATA 57.145 36.000 0.00 0.00 42.68 1.75
3480 5065 6.754702 CACTCTCTGTGGATTTTGATGAAT 57.245 37.500 0.00 0.00 42.68 2.57
3493 5078 5.453903 CCCTAATTGTATCCCACTCTCTGTG 60.454 48.000 0.00 0.00 45.80 3.66
3494 5079 4.656112 CCCTAATTGTATCCCACTCTCTGT 59.344 45.833 0.00 0.00 0.00 3.41
3495 5080 4.656112 ACCCTAATTGTATCCCACTCTCTG 59.344 45.833 0.00 0.00 0.00 3.35
3496 5081 4.897051 ACCCTAATTGTATCCCACTCTCT 58.103 43.478 0.00 0.00 0.00 3.10
3497 5082 5.104485 ACAACCCTAATTGTATCCCACTCTC 60.104 44.000 0.00 0.00 41.04 3.20
3498 5083 4.788617 ACAACCCTAATTGTATCCCACTCT 59.211 41.667 0.00 0.00 41.04 3.24
3499 5084 4.881850 CACAACCCTAATTGTATCCCACTC 59.118 45.833 0.00 0.00 40.89 3.51
3500 5085 4.325030 CCACAACCCTAATTGTATCCCACT 60.325 45.833 0.00 0.00 40.89 4.00
3501 5086 3.951680 CCACAACCCTAATTGTATCCCAC 59.048 47.826 0.00 0.00 40.89 4.61
3502 5087 3.053245 CCCACAACCCTAATTGTATCCCA 60.053 47.826 0.00 0.00 40.89 4.37
3503 5088 3.562182 CCCACAACCCTAATTGTATCCC 58.438 50.000 0.00 0.00 40.89 3.85
3504 5089 3.562182 CCCCACAACCCTAATTGTATCC 58.438 50.000 0.00 0.00 40.89 2.59
3505 5090 2.956333 GCCCCACAACCCTAATTGTATC 59.044 50.000 0.00 0.00 40.89 2.24
3506 5091 2.585432 AGCCCCACAACCCTAATTGTAT 59.415 45.455 0.00 0.00 40.89 2.29
3507 5092 1.997040 AGCCCCACAACCCTAATTGTA 59.003 47.619 0.00 0.00 40.89 2.41
3508 5093 0.783850 AGCCCCACAACCCTAATTGT 59.216 50.000 0.00 0.00 43.67 2.71
3509 5094 1.185315 CAGCCCCACAACCCTAATTG 58.815 55.000 0.00 0.00 35.59 2.32
3510 5095 0.041090 CCAGCCCCACAACCCTAATT 59.959 55.000 0.00 0.00 0.00 1.40
3511 5096 1.697297 CCAGCCCCACAACCCTAAT 59.303 57.895 0.00 0.00 0.00 1.73
3512 5097 3.176297 CCAGCCCCACAACCCTAA 58.824 61.111 0.00 0.00 0.00 2.69
3513 5098 3.657350 GCCAGCCCCACAACCCTA 61.657 66.667 0.00 0.00 0.00 3.53
3516 5101 3.645268 CTAGGCCAGCCCCACAACC 62.645 68.421 5.01 0.00 36.58 3.77
3517 5102 2.044946 CTAGGCCAGCCCCACAAC 60.045 66.667 5.01 0.00 36.58 3.32
3518 5103 4.047125 GCTAGGCCAGCCCCACAA 62.047 66.667 5.01 0.00 45.23 3.33
3529 5114 2.254464 GCGGCATACTTGGCTAGGC 61.254 63.158 9.85 9.85 45.85 3.93
3530 5115 1.598130 GGCGGCATACTTGGCTAGG 60.598 63.158 3.07 0.00 45.85 3.02
3531 5116 1.598130 GGGCGGCATACTTGGCTAG 60.598 63.158 12.47 0.00 45.85 3.42
3532 5117 2.508928 GGGCGGCATACTTGGCTA 59.491 61.111 12.47 0.00 45.85 3.93
3533 5118 4.506255 GGGGCGGCATACTTGGCT 62.506 66.667 12.47 0.00 45.85 4.75
3547 5132 1.460689 TATTGGTAGAGGCCCGGGG 60.461 63.158 25.28 9.31 0.00 5.73
3548 5133 2.058675 CTATTGGTAGAGGCCCGGG 58.941 63.158 19.09 19.09 0.00 5.73
3549 5134 1.371558 GCTATTGGTAGAGGCCCGG 59.628 63.158 0.00 0.00 0.00 5.73
3550 5135 0.468226 TTGCTATTGGTAGAGGCCCG 59.532 55.000 0.00 0.00 0.00 6.13
3551 5136 2.729028 TTTGCTATTGGTAGAGGCCC 57.271 50.000 0.00 0.00 0.00 5.80
3552 5137 4.092116 AGATTTGCTATTGGTAGAGGCC 57.908 45.455 0.00 0.00 0.00 5.19
3553 5138 4.693095 GCTAGATTTGCTATTGGTAGAGGC 59.307 45.833 0.00 0.00 0.00 4.70
3554 5139 6.107901 AGCTAGATTTGCTATTGGTAGAGG 57.892 41.667 0.00 0.00 39.21 3.69
3555 5140 7.330700 GCTTAGCTAGATTTGCTATTGGTAGAG 59.669 40.741 0.00 0.00 41.83 2.43
3556 5141 7.015682 AGCTTAGCTAGATTTGCTATTGGTAGA 59.984 37.037 4.30 0.00 41.83 2.59
3557 5142 7.158021 AGCTTAGCTAGATTTGCTATTGGTAG 58.842 38.462 4.30 0.00 41.83 3.18
3558 5143 7.067496 AGCTTAGCTAGATTTGCTATTGGTA 57.933 36.000 4.30 0.00 41.83 3.25
3559 5144 5.934781 AGCTTAGCTAGATTTGCTATTGGT 58.065 37.500 4.30 0.00 41.83 3.67
3560 5145 7.605691 ACATAGCTTAGCTAGATTTGCTATTGG 59.394 37.037 19.15 13.41 44.66 3.16
3561 5146 8.441608 CACATAGCTTAGCTAGATTTGCTATTG 58.558 37.037 19.15 10.59 44.66 1.90
3562 5147 7.118971 GCACATAGCTTAGCTAGATTTGCTATT 59.881 37.037 19.15 11.18 44.66 1.73
3563 5148 6.593382 GCACATAGCTTAGCTAGATTTGCTAT 59.407 38.462 19.15 16.53 44.66 2.97
3564 5149 5.928839 GCACATAGCTTAGCTAGATTTGCTA 59.071 40.000 19.15 14.11 44.66 3.49
3565 5150 4.754114 GCACATAGCTTAGCTAGATTTGCT 59.246 41.667 19.15 11.20 44.66 3.91
3566 5151 5.028428 GCACATAGCTTAGCTAGATTTGC 57.972 43.478 19.15 18.03 44.66 3.68
3580 5165 4.604976 CAGCAAATAAGGAAGCACATAGC 58.395 43.478 0.00 0.00 46.19 2.97
3581 5166 4.096833 TGCAGCAAATAAGGAAGCACATAG 59.903 41.667 0.00 0.00 0.00 2.23
3582 5167 4.015764 TGCAGCAAATAAGGAAGCACATA 58.984 39.130 0.00 0.00 0.00 2.29
3583 5168 2.827322 TGCAGCAAATAAGGAAGCACAT 59.173 40.909 0.00 0.00 0.00 3.21
3584 5169 2.237643 TGCAGCAAATAAGGAAGCACA 58.762 42.857 0.00 0.00 0.00 4.57
3585 5170 2.599659 GTGCAGCAAATAAGGAAGCAC 58.400 47.619 0.00 0.00 43.08 4.40
3586 5171 1.199789 CGTGCAGCAAATAAGGAAGCA 59.800 47.619 0.00 0.00 0.00 3.91
3587 5172 1.468520 TCGTGCAGCAAATAAGGAAGC 59.531 47.619 0.00 0.00 0.00 3.86
3588 5173 2.159517 GGTCGTGCAGCAAATAAGGAAG 60.160 50.000 0.00 0.00 0.00 3.46
3589 5174 1.810151 GGTCGTGCAGCAAATAAGGAA 59.190 47.619 0.00 0.00 0.00 3.36
3590 5175 1.003118 AGGTCGTGCAGCAAATAAGGA 59.997 47.619 0.00 0.00 0.00 3.36
3591 5176 1.453155 AGGTCGTGCAGCAAATAAGG 58.547 50.000 0.00 0.00 0.00 2.69
3592 5177 2.483877 TGAAGGTCGTGCAGCAAATAAG 59.516 45.455 0.00 0.00 0.00 1.73
3593 5178 2.499197 TGAAGGTCGTGCAGCAAATAA 58.501 42.857 0.00 0.00 0.00 1.40
3594 5179 2.177394 TGAAGGTCGTGCAGCAAATA 57.823 45.000 0.00 0.00 0.00 1.40
3595 5180 1.317613 TTGAAGGTCGTGCAGCAAAT 58.682 45.000 0.00 0.00 0.00 2.32
3596 5181 1.098869 TTTGAAGGTCGTGCAGCAAA 58.901 45.000 0.00 0.00 0.00 3.68
3597 5182 1.065401 CTTTTGAAGGTCGTGCAGCAA 59.935 47.619 0.00 0.00 0.00 3.91
3598 5183 0.662619 CTTTTGAAGGTCGTGCAGCA 59.337 50.000 0.00 0.00 0.00 4.41
3599 5184 0.663153 ACTTTTGAAGGTCGTGCAGC 59.337 50.000 0.00 0.00 0.00 5.25
3600 5185 4.545823 TTTACTTTTGAAGGTCGTGCAG 57.454 40.909 0.00 0.00 0.00 4.41
3601 5186 5.508200 AATTTACTTTTGAAGGTCGTGCA 57.492 34.783 0.00 0.00 0.00 4.57
3602 5187 6.913673 TGTAAATTTACTTTTGAAGGTCGTGC 59.086 34.615 24.81 0.00 34.77 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.