Multiple sequence alignment - TraesCS4D01G311200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G311200 chr4D 100.000 7648 0 0 1 7648 477898021 477890374 0.000000e+00 14124.0
1 TraesCS4D01G311200 chr4D 91.111 90 8 0 1553 1642 185080961 185081050 1.040000e-23 122.0
2 TraesCS4D01G311200 chr4D 100.000 33 0 0 5793 5825 477892196 477892164 2.300000e-05 62.1
3 TraesCS4D01G311200 chr4D 100.000 33 0 0 5826 5858 477892229 477892197 2.300000e-05 62.1
4 TraesCS4D01G311200 chr4B 95.219 4915 166 35 471 5333 604054508 604049611 0.000000e+00 7710.0
5 TraesCS4D01G311200 chr4B 91.604 1060 51 10 5826 6882 604048855 604047831 0.000000e+00 1430.0
6 TraesCS4D01G311200 chr4B 96.465 396 13 1 1 396 604054962 604054568 0.000000e+00 652.0
7 TraesCS4D01G311200 chr4B 88.533 375 17 11 7003 7364 604047655 604047294 1.520000e-116 431.0
8 TraesCS4D01G311200 chr4B 89.796 294 20 5 5331 5614 604049578 604049285 1.210000e-97 368.0
9 TraesCS4D01G311200 chr4B 93.519 216 14 0 5610 5825 604049038 604048823 9.570000e-84 322.0
10 TraesCS4D01G311200 chr4B 91.556 225 7 2 7362 7586 604047020 604046808 4.490000e-77 300.0
11 TraesCS4D01G311200 chr4B 91.720 157 10 1 1995 2148 324329403 324329247 1.670000e-51 215.0
12 TraesCS4D01G311200 chr4B 96.094 128 5 0 6879 7006 604047874 604047747 7.780000e-50 209.0
13 TraesCS4D01G311200 chr4A 93.523 3628 136 27 1749 5328 684589035 684585459 0.000000e+00 5306.0
14 TraesCS4D01G311200 chr4A 87.608 1275 97 22 471 1721 684590257 684589020 0.000000e+00 1423.0
15 TraesCS4D01G311200 chr4A 90.808 990 76 6 5826 6811 684584949 684583971 0.000000e+00 1310.0
16 TraesCS4D01G311200 chr4A 93.267 505 24 4 5331 5825 684585421 684584917 0.000000e+00 736.0
17 TraesCS4D01G311200 chr4A 91.379 464 37 3 7014 7475 684583978 684583516 3.890000e-177 632.0
18 TraesCS4D01G311200 chr4A 91.481 270 20 3 130 399 684590585 684590319 1.210000e-97 368.0
19 TraesCS4D01G311200 chr1A 96.259 294 11 0 3856 4149 41753255 41752962 4.150000e-132 483.0
20 TraesCS4D01G311200 chr1A 79.147 211 26 10 1437 1646 383751880 383751687 6.230000e-26 130.0
21 TraesCS4D01G311200 chr6D 82.779 331 28 14 1444 1760 19273326 19273011 1.270000e-67 268.0
22 TraesCS4D01G311200 chr6D 91.124 169 12 1 1983 2148 19272998 19272830 7.720000e-55 226.0
23 TraesCS4D01G311200 chr6D 88.462 78 5 1 5256 5329 13067119 13067042 2.940000e-14 91.6
24 TraesCS4D01G311200 chrUn 93.491 169 8 1 1983 2148 143930212 143930380 1.650000e-61 248.0
25 TraesCS4D01G311200 chr2D 91.124 169 12 1 1983 2148 362320107 362320275 7.720000e-55 226.0
26 TraesCS4D01G311200 chr2D 86.321 212 20 8 1448 1656 41850860 41851065 9.990000e-54 222.0
27 TraesCS4D01G311200 chr2D 82.353 204 20 8 1444 1646 392353530 392353718 6.140000e-36 163.0
28 TraesCS4D01G311200 chr1B 89.344 122 9 2 2031 2148 44977753 44977632 4.780000e-32 150.0
29 TraesCS4D01G311200 chr3D 87.654 81 6 2 5249 5325 523157385 523157465 2.940000e-14 91.6
30 TraesCS4D01G311200 chr3D 86.420 81 7 1 5249 5325 108916261 108916341 1.370000e-12 86.1
31 TraesCS4D01G311200 chr5D 87.059 85 4 4 5256 5333 259544235 259544319 1.060000e-13 89.8
32 TraesCS4D01G311200 chr5D 85.185 81 10 2 5249 5329 450670130 450670052 1.770000e-11 82.4
33 TraesCS4D01G311200 chr1D 87.179 78 6 1 5256 5329 141705982 141706059 1.370000e-12 86.1
34 TraesCS4D01G311200 chr5A 85.882 85 4 5 5256 5333 346176675 346176592 4.920000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G311200 chr4D 477890374 477898021 7647 True 14124.000000 14124 100.000000 1 7648 1 chr4D.!!$R1 7647
1 TraesCS4D01G311200 chr4B 604046808 604054962 8154 True 1427.750000 7710 92.848250 1 7586 8 chr4B.!!$R2 7585
2 TraesCS4D01G311200 chr4A 684583516 684590585 7069 True 1629.166667 5306 91.344333 130 7475 6 chr4A.!!$R1 7345

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
745 755 0.108520 TAGCGGTCGGAAATGGTGAC 60.109 55.000 0.00 0.0 0.00 3.67 F
1324 1349 0.250553 TCTGTTGGTTTAGGCCACCG 60.251 55.000 5.01 0.0 38.42 4.94 F
1772 1809 0.406361 ATTTGGGGCGTTTAGGTCCA 59.594 50.000 0.00 0.0 31.63 4.02 F
2947 3023 0.745128 AGTACTCGAGGAGCCGTCAG 60.745 60.000 18.41 0.0 32.04 3.51 F
3037 3113 1.496060 TTCATGGTCGAGCTGGGTAT 58.504 50.000 16.64 0.0 0.00 2.73 F
4286 4362 0.606604 GCGTAGGTCTTGAACAGGGA 59.393 55.000 0.00 0.0 0.00 4.20 F
5427 5567 2.037121 TGAAGCAGCTGTAGCAAGTGTA 59.963 45.455 16.64 0.0 45.16 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2150 2216 0.030638 GGTCTTGCGCACACACAAAT 59.969 50.0 11.12 0.0 0.00 2.32 R
2833 2909 0.389166 GTGAAGGTGGAGCGTCTCTG 60.389 60.0 6.78 0.0 0.00 3.35 R
3028 3104 1.056700 AATCCTGCCGATACCCAGCT 61.057 55.0 0.00 0.0 0.00 4.24 R
3775 3851 0.609406 GTTCACCCCTTGAAGGAGCC 60.609 60.0 13.97 0.0 45.23 4.70 R
4357 4445 1.642112 TCATGCCATTGCCCAGAAAA 58.358 45.0 0.00 0.0 36.33 2.29 R
6057 6458 1.281899 GATCCTCGCCAAAGAGTTCG 58.718 55.0 0.00 0.0 36.56 3.95 R
7273 7774 0.108186 CGAGCATAGGGTCACAAGCA 60.108 55.0 7.42 0.0 41.62 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 2.040278 TGCAGGTACTCAGGAGCAAAAT 59.960 45.455 0.00 0.00 34.60 1.82
102 103 4.042187 ACAAGCTTCTAACACTGGAGGAAT 59.958 41.667 0.00 0.00 0.00 3.01
132 133 5.709966 GTTTCACTCAAACAACTGGACTTT 58.290 37.500 0.00 0.00 43.60 2.66
305 306 5.282510 ACCTTAATTATCTCAGAAGACGCG 58.717 41.667 3.53 3.53 33.32 6.01
362 363 4.583489 AGTCTCTTCACGAACACTTCCTTA 59.417 41.667 0.00 0.00 0.00 2.69
419 420 2.584166 CATCACTTGCACGAGTCAAC 57.416 50.000 0.00 0.00 0.00 3.18
420 421 1.136529 CATCACTTGCACGAGTCAACG 60.137 52.381 0.00 0.00 39.31 4.10
421 422 1.083401 CACTTGCACGAGTCAACGC 60.083 57.895 0.00 0.00 36.70 4.84
422 423 1.520564 ACTTGCACGAGTCAACGCA 60.521 52.632 0.00 0.00 36.70 5.24
424 425 0.179240 CTTGCACGAGTCAACGCATC 60.179 55.000 0.00 0.00 33.71 3.91
426 427 1.284297 TGCACGAGTCAACGCATCTG 61.284 55.000 0.00 0.00 36.70 2.90
427 428 1.417592 CACGAGTCAACGCATCTGC 59.582 57.895 0.00 0.00 36.70 4.26
428 429 1.006220 ACGAGTCAACGCATCTGCA 60.006 52.632 2.72 0.00 42.21 4.41
429 430 0.599991 ACGAGTCAACGCATCTGCAA 60.600 50.000 2.72 0.00 42.21 4.08
432 433 1.264020 GAGTCAACGCATCTGCAAACA 59.736 47.619 2.72 0.00 42.21 2.83
433 434 1.265095 AGTCAACGCATCTGCAAACAG 59.735 47.619 2.72 0.00 45.95 3.16
447 448 4.564041 TGCAAACAGAAAACAAAGAAGCA 58.436 34.783 0.00 0.00 0.00 3.91
448 449 5.177326 TGCAAACAGAAAACAAAGAAGCAT 58.823 33.333 0.00 0.00 0.00 3.79
449 450 5.291614 TGCAAACAGAAAACAAAGAAGCATC 59.708 36.000 0.00 0.00 0.00 3.91
450 451 5.291614 GCAAACAGAAAACAAAGAAGCATCA 59.708 36.000 0.00 0.00 0.00 3.07
451 452 6.699063 CAAACAGAAAACAAAGAAGCATCAC 58.301 36.000 0.00 0.00 0.00 3.06
453 454 6.212888 ACAGAAAACAAAGAAGCATCACTT 57.787 33.333 0.00 0.00 42.98 3.16
467 468 3.499048 CATCACTTGCATGACTCAAAGC 58.501 45.455 6.60 0.99 0.00 3.51
468 469 2.574450 TCACTTGCATGACTCAAAGCA 58.426 42.857 6.60 5.64 34.79 3.91
469 470 3.151554 TCACTTGCATGACTCAAAGCAT 58.848 40.909 6.60 0.00 36.80 3.79
595 601 5.996513 AGCACAGAATCATTGAGTATGGATC 59.003 40.000 12.68 2.43 34.85 3.36
599 605 5.467735 CAGAATCATTGAGTATGGATCGCAA 59.532 40.000 0.95 0.00 34.85 4.85
631 641 0.818445 CTCCATGCCTGCACTGATCC 60.818 60.000 0.00 0.00 0.00 3.36
701 711 0.545646 TGGTGGGATGCATCGAATGA 59.454 50.000 20.15 1.61 0.00 2.57
710 720 4.154918 GGATGCATCGAATGACCCTTTATC 59.845 45.833 20.15 0.00 0.00 1.75
745 755 0.108520 TAGCGGTCGGAAATGGTGAC 60.109 55.000 0.00 0.00 0.00 3.67
900 915 2.686235 CAGTGAACTGAGCTCTGAAGG 58.314 52.381 25.49 8.32 46.59 3.46
902 917 1.620819 GTGAACTGAGCTCTGAAGGGA 59.379 52.381 25.49 0.00 0.00 4.20
904 919 2.909006 TGAACTGAGCTCTGAAGGGAAT 59.091 45.455 25.49 0.00 0.00 3.01
913 928 3.869912 GCTCTGAAGGGAATACACTGCAA 60.870 47.826 0.00 0.00 34.24 4.08
1018 1033 5.458595 TGTAGATGGAGCAGATTAGGAGAA 58.541 41.667 0.00 0.00 0.00 2.87
1019 1034 5.538053 TGTAGATGGAGCAGATTAGGAGAAG 59.462 44.000 0.00 0.00 0.00 2.85
1020 1035 4.813809 AGATGGAGCAGATTAGGAGAAGA 58.186 43.478 0.00 0.00 0.00 2.87
1036 1051 7.929941 AGGAGAAGAAAACTAATCCAATCAC 57.070 36.000 0.00 0.00 0.00 3.06
1143 1158 2.168666 GAGGAAGAACGGCGGGAGTT 62.169 60.000 13.24 0.00 34.07 3.01
1204 1228 0.878961 GTTTGAGTCGTCAGGGCGTT 60.879 55.000 0.00 0.00 32.98 4.84
1206 1230 2.023414 TTGAGTCGTCAGGGCGTTGT 62.023 55.000 0.00 0.00 32.98 3.32
1218 1242 1.599797 GCGTTGTAAGCCACAGGGT 60.600 57.895 0.00 0.00 38.72 4.34
1219 1243 0.320946 GCGTTGTAAGCCACAGGGTA 60.321 55.000 0.00 0.00 38.72 3.69
1324 1349 0.250553 TCTGTTGGTTTAGGCCACCG 60.251 55.000 5.01 0.00 38.42 4.94
1460 1485 3.925090 CCCATCCCGCTCCGGTAC 61.925 72.222 0.00 0.00 46.80 3.34
1674 1704 6.253727 GTCTTCGTCGATTGATTTAGTGATGT 59.746 38.462 0.00 0.00 0.00 3.06
1680 1710 4.318333 CGATTGATTTAGTGATGTGCGAGG 60.318 45.833 0.00 0.00 0.00 4.63
1698 1728 3.367087 CGAGGTTTTAGTCGTCCAGTGAT 60.367 47.826 0.00 0.00 0.00 3.06
1726 1756 0.804989 CGAATTTGAGGAGTGTGCCC 59.195 55.000 0.00 0.00 0.00 5.36
1772 1809 0.406361 ATTTGGGGCGTTTAGGTCCA 59.594 50.000 0.00 0.00 31.63 4.02
1969 2035 2.113986 ACCTGTTCTGGTGCCAGC 59.886 61.111 13.12 1.53 43.31 4.85
1998 2064 1.000060 AGGCGTGCTACTCAACGTTTA 60.000 47.619 0.00 0.00 0.00 2.01
2004 2070 5.090757 CGTGCTACTCAACGTTTACTATGA 58.909 41.667 0.00 0.00 0.00 2.15
2005 2071 5.742453 CGTGCTACTCAACGTTTACTATGAT 59.258 40.000 0.00 0.00 0.00 2.45
2025 2091 4.776837 TGATATGTGCTGGTTTTTCCCAAT 59.223 37.500 0.00 0.00 33.07 3.16
2078 2144 7.611213 ACACTTCGGTTTCCATCTATTTAAG 57.389 36.000 0.00 0.00 0.00 1.85
2193 2269 8.367911 ACCTTGTTTCCTTGATTTTCTTATTCC 58.632 33.333 0.00 0.00 0.00 3.01
2248 2324 2.290577 GCAGTGGAATCTGAAGGTTCCT 60.291 50.000 20.39 1.68 43.41 3.36
2275 2351 3.391049 AGCTTCTCAACTCGGTTGTAAC 58.609 45.455 13.95 0.00 43.23 2.50
2338 2414 4.950050 ACGGGTCTAAATCTAATGCTGAG 58.050 43.478 0.00 0.00 0.00 3.35
2414 2490 2.507471 AGTCCTGATGGTTCCAAGGATC 59.493 50.000 13.37 8.73 34.23 3.36
2490 2566 1.490490 TGAAACTTCTGCAGACAGGGT 59.510 47.619 18.03 10.23 44.59 4.34
2542 2618 2.146342 CATAATAAGCACGGCAGGGAG 58.854 52.381 0.00 0.00 0.00 4.30
2577 2653 2.214181 GACCACGCAGATGAGTCGGT 62.214 60.000 9.35 9.35 34.25 4.69
2659 2735 0.831288 ATGAGAGGAGGGGATCTGCG 60.831 60.000 0.00 0.00 38.98 5.18
2833 2909 3.970640 AGTCATCAGGGGATAGAAGGAAC 59.029 47.826 0.00 0.00 30.87 3.62
2880 2956 3.099905 CAGATACACCAGACAGAGGGAA 58.900 50.000 0.00 0.00 0.00 3.97
2912 2988 5.652014 AGTTGGAATGTGAAAACACAAGAGA 59.348 36.000 7.12 0.00 38.69 3.10
2947 3023 0.745128 AGTACTCGAGGAGCCGTCAG 60.745 60.000 18.41 0.00 32.04 3.51
2974 3050 4.509600 CGAGATCCTAAAGAGGCAAATGTC 59.490 45.833 0.00 0.00 43.40 3.06
3011 3087 4.398319 CACACAGGAAAGGTTAGATGGTT 58.602 43.478 0.00 0.00 0.00 3.67
3028 3104 2.224090 TGGTTCGAGTTTTCATGGTCGA 60.224 45.455 0.00 0.00 39.57 4.20
3037 3113 1.496060 TTCATGGTCGAGCTGGGTAT 58.504 50.000 16.64 0.00 0.00 2.73
3064 3140 2.903135 GGATTCCAGGGGTAGATCTGAG 59.097 54.545 5.18 0.00 33.11 3.35
3355 3431 4.559862 TTCTCAGAGAATTGGAGTTCCC 57.440 45.455 8.95 0.00 34.29 3.97
3614 3690 2.398588 CAAGTATGGGAGCTGGACCTA 58.601 52.381 0.00 0.00 0.00 3.08
3775 3851 1.399440 CATGGTGCACCGATCAGAAAG 59.601 52.381 30.07 4.66 39.43 2.62
3859 3935 7.813148 CGACCTCAAAACTTCATTAGAGAACTA 59.187 37.037 0.00 0.00 0.00 2.24
3994 4070 3.190118 GGCAACATGTTCTTTCTCCAGAG 59.810 47.826 8.48 0.00 0.00 3.35
4000 4076 7.032377 ACATGTTCTTTCTCCAGAGTTTTTC 57.968 36.000 0.00 0.00 0.00 2.29
4235 4311 6.268617 TGAATCAACAGGCTATAGCTGATACT 59.731 38.462 23.53 9.46 41.70 2.12
4286 4362 0.606604 GCGTAGGTCTTGAACAGGGA 59.393 55.000 0.00 0.00 0.00 4.20
4336 4423 5.997746 AGCTTTCTCTAACACATGCAGTTTA 59.002 36.000 9.12 0.00 0.00 2.01
4337 4424 6.073003 AGCTTTCTCTAACACATGCAGTTTAC 60.073 38.462 9.12 0.00 0.00 2.01
4338 4425 6.293407 GCTTTCTCTAACACATGCAGTTTACA 60.293 38.462 9.12 0.00 0.00 2.41
4339 4426 7.561021 TTTCTCTAACACATGCAGTTTACAA 57.439 32.000 9.12 0.00 0.00 2.41
4340 4427 6.539649 TCTCTAACACATGCAGTTTACAAC 57.460 37.500 9.12 0.00 0.00 3.32
4343 4431 6.526526 TCTAACACATGCAGTTTACAACCTA 58.473 36.000 9.12 0.00 0.00 3.08
4459 4548 8.089597 ACAATGCATTTTGATCATGTTTCTGTA 58.910 29.630 9.83 0.00 0.00 2.74
4487 4577 4.261405 CCATTCCGTTTAGTTGCAGTCAAA 60.261 41.667 0.00 0.00 33.37 2.69
4488 4578 3.955771 TCCGTTTAGTTGCAGTCAAAC 57.044 42.857 8.33 8.33 33.37 2.93
4489 4579 3.537580 TCCGTTTAGTTGCAGTCAAACT 58.462 40.909 13.71 5.63 33.37 2.66
4490 4580 3.942748 TCCGTTTAGTTGCAGTCAAACTT 59.057 39.130 13.71 0.00 33.37 2.66
4518 4608 7.325660 TCTGCATAAATCTCACATTCTTTCC 57.674 36.000 0.00 0.00 0.00 3.13
4595 4688 6.048732 TGTCATACAGTTTCCAGCTGAATA 57.951 37.500 17.39 0.00 37.40 1.75
4601 4695 9.941664 CATACAGTTTCCAGCTGAATAATAAAG 57.058 33.333 17.39 0.00 37.40 1.85
4935 5029 3.727726 TGTCATCCACGCGAATATTGAT 58.272 40.909 15.93 1.94 0.00 2.57
4989 5083 3.751518 TGGTATCTATCTCGTAGCTGCA 58.248 45.455 1.02 0.00 0.00 4.41
5009 5103 9.419297 AGCTGCAATTGATAATGCTTATTATTG 57.581 29.630 10.34 0.00 42.97 1.90
5329 5429 9.088512 GTCTTACATTATTGAACAGAGGTAGTG 57.911 37.037 0.00 0.00 0.00 2.74
5354 5489 7.553760 TGCATATGAAGCTTGAACTCTGAATAA 59.446 33.333 2.10 0.00 0.00 1.40
5355 5490 8.566260 GCATATGAAGCTTGAACTCTGAATAAT 58.434 33.333 2.10 0.00 0.00 1.28
5357 5492 6.992063 TGAAGCTTGAACTCTGAATAATCC 57.008 37.500 2.10 0.00 0.00 3.01
5358 5493 6.715280 TGAAGCTTGAACTCTGAATAATCCT 58.285 36.000 2.10 0.00 0.00 3.24
5359 5494 7.170965 TGAAGCTTGAACTCTGAATAATCCTT 58.829 34.615 2.10 0.00 0.00 3.36
5362 5497 9.520515 AAGCTTGAACTCTGAATAATCCTTTTA 57.479 29.630 0.00 0.00 0.00 1.52
5363 5498 8.951243 AGCTTGAACTCTGAATAATCCTTTTAC 58.049 33.333 0.00 0.00 0.00 2.01
5364 5499 7.905493 GCTTGAACTCTGAATAATCCTTTTACG 59.095 37.037 0.00 0.00 0.00 3.18
5427 5567 2.037121 TGAAGCAGCTGTAGCAAGTGTA 59.963 45.455 16.64 0.00 45.16 2.90
5574 5719 8.517062 AAAAGGAGATGTTAGAGATTTCATGG 57.483 34.615 0.00 0.00 0.00 3.66
5607 5752 8.133024 TGTTGATTCTTGGCATAAAGGTAATT 57.867 30.769 0.00 0.00 0.00 1.40
5672 6068 5.443185 TCGTACTATTTATCCTTCCGTGG 57.557 43.478 0.00 0.00 0.00 4.94
5712 6111 6.705863 AGCTATTCCTTGGTCATTTTCATC 57.294 37.500 0.00 0.00 0.00 2.92
5737 6136 5.277825 TGGTATGCTTGAAAGAAAAACACG 58.722 37.500 0.00 0.00 0.00 4.49
5764 6163 2.570302 TGGTGAAGTTACTAGGGAAGGC 59.430 50.000 0.00 0.00 0.00 4.35
5786 6185 6.898521 AGGCCTTACTACTTTCTCTTCTATGT 59.101 38.462 0.00 0.00 0.00 2.29
5825 6224 4.685169 AGTTATCCATTTGTTGACAGCG 57.315 40.909 0.00 0.00 0.00 5.18
5827 6226 5.242434 AGTTATCCATTTGTTGACAGCGTA 58.758 37.500 0.00 0.00 0.00 4.42
5828 6227 5.121768 AGTTATCCATTTGTTGACAGCGTAC 59.878 40.000 0.00 0.00 0.00 3.67
5829 6228 2.839975 TCCATTTGTTGACAGCGTACA 58.160 42.857 0.00 0.00 0.00 2.90
5830 6229 2.805671 TCCATTTGTTGACAGCGTACAG 59.194 45.455 0.00 0.00 0.00 2.74
5831 6230 2.805671 CCATTTGTTGACAGCGTACAGA 59.194 45.455 0.00 0.00 0.00 3.41
5832 6231 3.436704 CCATTTGTTGACAGCGTACAGAT 59.563 43.478 0.00 0.00 0.00 2.90
5833 6232 4.629634 CCATTTGTTGACAGCGTACAGATA 59.370 41.667 0.00 0.00 0.00 1.98
5834 6233 5.294306 CCATTTGTTGACAGCGTACAGATAT 59.706 40.000 0.00 0.00 0.00 1.63
5835 6234 6.414079 CATTTGTTGACAGCGTACAGATATC 58.586 40.000 0.00 0.00 0.00 1.63
5836 6235 4.983671 TGTTGACAGCGTACAGATATCT 57.016 40.909 0.00 0.00 0.00 1.98
5837 6236 6.445357 TTGTTGACAGCGTACAGATATCTA 57.555 37.500 4.54 0.00 0.00 1.98
5838 6237 6.061231 TGTTGACAGCGTACAGATATCTAG 57.939 41.667 4.54 2.95 0.00 2.43
5839 6238 5.589050 TGTTGACAGCGTACAGATATCTAGT 59.411 40.000 4.54 8.71 0.00 2.57
5840 6239 6.095021 TGTTGACAGCGTACAGATATCTAGTT 59.905 38.462 4.54 0.00 0.00 2.24
5841 6240 7.281549 TGTTGACAGCGTACAGATATCTAGTTA 59.718 37.037 4.54 0.00 0.00 2.24
5842 6241 7.981102 TGACAGCGTACAGATATCTAGTTAT 57.019 36.000 4.54 0.00 0.00 1.89
5843 6242 8.030744 TGACAGCGTACAGATATCTAGTTATC 57.969 38.462 4.54 11.43 0.00 1.75
5844 6243 7.119407 TGACAGCGTACAGATATCTAGTTATCC 59.881 40.741 14.58 2.43 30.29 2.59
5845 6244 6.940867 ACAGCGTACAGATATCTAGTTATCCA 59.059 38.462 14.58 1.84 30.29 3.41
5846 6245 7.612244 ACAGCGTACAGATATCTAGTTATCCAT 59.388 37.037 14.58 7.91 30.29 3.41
5847 6246 8.462811 CAGCGTACAGATATCTAGTTATCCATT 58.537 37.037 14.58 5.06 30.29 3.16
5848 6247 9.026121 AGCGTACAGATATCTAGTTATCCATTT 57.974 33.333 14.58 3.18 30.29 2.32
5849 6248 9.077674 GCGTACAGATATCTAGTTATCCATTTG 57.922 37.037 14.58 10.15 30.29 2.32
5857 6256 6.985188 TCTAGTTATCCATTTGTTGACAGC 57.015 37.500 0.00 0.00 0.00 4.40
5858 6257 6.711277 TCTAGTTATCCATTTGTTGACAGCT 58.289 36.000 0.00 0.00 0.00 4.24
5859 6258 7.168219 TCTAGTTATCCATTTGTTGACAGCTT 58.832 34.615 0.00 0.00 0.00 3.74
5952 6353 7.042797 ACGCATCCTTTGAAGCATAATATTT 57.957 32.000 0.00 0.00 34.94 1.40
6117 6518 3.753797 GGCTTACTCTTGGGAAAGACTTG 59.246 47.826 0.00 0.00 0.00 3.16
6120 6521 3.493767 ACTCTTGGGAAAGACTTGTCC 57.506 47.619 7.51 7.51 0.00 4.02
6145 6546 5.751586 ACTCCAACTTCAACAAAGAGGTAA 58.248 37.500 0.00 0.00 38.44 2.85
6151 6552 5.902681 ACTTCAACAAAGAGGTAAAAAGCC 58.097 37.500 0.00 0.00 38.44 4.35
6167 6568 7.062956 GGTAAAAAGCCGGATATTCAACTTTTG 59.937 37.037 5.05 0.00 37.40 2.44
6173 6574 4.438744 CCGGATATTCAACTTTTGTGCTCC 60.439 45.833 0.00 0.00 0.00 4.70
6225 6628 2.002586 CCACGATCTCCACACATCAAC 58.997 52.381 0.00 0.00 0.00 3.18
6247 6650 4.926238 ACGTCATCTCTGCTAAGAAACTTG 59.074 41.667 0.00 0.00 30.03 3.16
6254 6657 7.526142 TCTCTGCTAAGAAACTTGACTCTTA 57.474 36.000 0.00 0.00 33.89 2.10
6365 6768 0.675837 TCGTGACGACTCCGGAGATT 60.676 55.000 37.69 20.15 40.78 2.40
6434 6837 0.968393 GCTATTGGCGGAAAACCCCA 60.968 55.000 0.00 0.00 0.00 4.96
6452 6855 2.202987 CTCCATGGAGCTCGGTGC 60.203 66.667 28.45 0.00 43.29 5.01
6497 6900 5.102313 GCAGTGGTGGCTACATTTATTTTC 58.898 41.667 1.52 0.00 0.00 2.29
6504 6907 7.566879 TGGTGGCTACATTTATTTTCCCATATT 59.433 33.333 1.52 0.00 0.00 1.28
6550 6953 3.905249 GGGGTTGATCCGCTTGTC 58.095 61.111 0.00 0.00 44.48 3.18
6551 6954 2.106683 GGGGTTGATCCGCTTGTCG 61.107 63.158 0.00 0.00 44.48 4.35
6552 6955 1.375523 GGGTTGATCCGCTTGTCGT 60.376 57.895 0.00 0.00 37.00 4.34
6553 6956 1.359459 GGGTTGATCCGCTTGTCGTC 61.359 60.000 0.00 0.00 37.00 4.20
6554 6957 1.683790 GGTTGATCCGCTTGTCGTCG 61.684 60.000 0.00 0.00 36.19 5.12
6555 6958 0.731514 GTTGATCCGCTTGTCGTCGA 60.732 55.000 0.00 0.00 36.19 4.20
6556 6959 0.038983 TTGATCCGCTTGTCGTCGAA 60.039 50.000 0.00 0.00 36.19 3.71
6592 6995 5.014808 CTGTATGTCAGTGTCATGGATGA 57.985 43.478 12.40 0.00 39.17 2.92
6641 7045 7.699812 GCAATCAGAATAAGAAGCTTACCTTTG 59.300 37.037 0.00 0.00 32.78 2.77
6642 7046 6.743575 TCAGAATAAGAAGCTTACCTTTGC 57.256 37.500 0.00 0.00 32.78 3.68
6643 7047 5.351465 TCAGAATAAGAAGCTTACCTTTGCG 59.649 40.000 0.00 0.00 32.78 4.85
6644 7048 4.095036 AGAATAAGAAGCTTACCTTTGCGC 59.905 41.667 0.00 0.00 32.78 6.09
6662 7066 2.648724 GCGCGTGCATGCATGTAC 60.649 61.111 34.08 31.04 42.15 2.90
6667 7071 1.596220 GCGTGCATGCATGTACTGATG 60.596 52.381 34.88 24.25 40.59 3.07
6673 7077 1.353103 GCATGTACTGATGCGGTGC 59.647 57.895 2.73 0.00 39.47 5.01
6792 7196 4.432373 GCCGTCGCAAATATTGTTTGAAAC 60.432 41.667 9.75 0.14 34.03 2.78
6795 7199 9.546599 GCCGTCGCAAATATTGTTTGAAACAAA 62.547 37.037 25.01 15.35 43.95 2.83
6819 7223 1.764571 TACAGTGGCTTGCCGGTTCT 61.765 55.000 1.90 0.63 0.00 3.01
6885 7289 8.871686 AGATATTTGACACAAAAACAAAGACC 57.128 30.769 0.00 0.00 37.04 3.85
6886 7290 7.926018 AGATATTTGACACAAAAACAAAGACCC 59.074 33.333 0.00 0.00 37.04 4.46
6887 7291 4.873746 TTGACACAAAAACAAAGACCCA 57.126 36.364 0.00 0.00 0.00 4.51
6888 7292 5.413309 TTGACACAAAAACAAAGACCCAT 57.587 34.783 0.00 0.00 0.00 4.00
6889 7293 4.753233 TGACACAAAAACAAAGACCCATG 58.247 39.130 0.00 0.00 0.00 3.66
6890 7294 4.119136 GACACAAAAACAAAGACCCATGG 58.881 43.478 4.14 4.14 0.00 3.66
6891 7295 3.517500 ACACAAAAACAAAGACCCATGGT 59.482 39.130 11.73 0.00 39.44 3.55
6892 7296 3.870419 CACAAAAACAAAGACCCATGGTG 59.130 43.478 11.73 4.22 35.25 4.17
6893 7297 3.772025 ACAAAAACAAAGACCCATGGTGA 59.228 39.130 11.73 0.00 35.25 4.02
6894 7298 4.223923 ACAAAAACAAAGACCCATGGTGAA 59.776 37.500 11.73 0.00 35.25 3.18
6895 7299 5.104569 ACAAAAACAAAGACCCATGGTGAAT 60.105 36.000 11.73 0.00 35.25 2.57
6896 7300 6.098982 ACAAAAACAAAGACCCATGGTGAATA 59.901 34.615 11.73 0.00 35.25 1.75
6897 7301 6.933514 AAAACAAAGACCCATGGTGAATAT 57.066 33.333 11.73 0.00 35.25 1.28
6898 7302 8.310382 CAAAAACAAAGACCCATGGTGAATATA 58.690 33.333 11.73 0.00 35.25 0.86
6899 7303 8.608185 AAAACAAAGACCCATGGTGAATATAT 57.392 30.769 11.73 0.00 35.25 0.86
6900 7304 9.707957 AAAACAAAGACCCATGGTGAATATATA 57.292 29.630 11.73 0.00 35.25 0.86
6901 7305 8.924511 AACAAAGACCCATGGTGAATATATAG 57.075 34.615 11.73 0.00 35.25 1.31
6902 7306 8.275187 ACAAAGACCCATGGTGAATATATAGA 57.725 34.615 11.73 0.00 35.25 1.98
6903 7307 8.894592 ACAAAGACCCATGGTGAATATATAGAT 58.105 33.333 11.73 0.00 35.25 1.98
6909 7313 9.958125 ACCCATGGTGAATATATAGATATCTGA 57.042 33.333 15.79 3.60 32.98 3.27
6930 7334 4.800993 TGACACAAAAATAAACTTGCACGG 59.199 37.500 0.00 0.00 0.00 4.94
6931 7335 4.749976 ACACAAAAATAAACTTGCACGGT 58.250 34.783 0.00 0.00 0.00 4.83
7134 7635 4.140536 GGTGAATCCATCTTTCTGATCCC 58.859 47.826 0.00 0.00 35.97 3.85
7209 7710 1.178534 CGGTGCCCCATGTTCAAAGT 61.179 55.000 0.00 0.00 0.00 2.66
7217 7718 2.095567 CCCATGTTCAAAGTGAGCTTCG 60.096 50.000 0.00 0.00 33.01 3.79
7236 7737 7.378181 AGCTTCGTTTATTGTTTTCCATTCAT 58.622 30.769 0.00 0.00 0.00 2.57
7265 7766 3.697542 TCAGTGAATGGATTCTGGCAATG 59.302 43.478 0.00 0.00 37.67 2.82
7268 7769 3.541779 TGAATGGATTCTGGCAATGGCC 61.542 50.000 3.28 3.28 46.17 5.36
7332 7844 1.080298 GTTGCCACATCAGCCTTGC 60.080 57.895 0.00 0.00 0.00 4.01
7337 7849 0.901580 CCACATCAGCCTTGCCCTTT 60.902 55.000 0.00 0.00 0.00 3.11
7340 7852 1.259609 CATCAGCCTTGCCCTTTTCA 58.740 50.000 0.00 0.00 0.00 2.69
7398 8186 4.433186 TTACCTTTGAATGGTCAATGCG 57.567 40.909 5.98 0.00 43.29 4.73
7468 8256 8.637281 TTAAATGCAGCAATGTCATCAAATAG 57.363 30.769 0.00 0.00 0.00 1.73
7487 8275 1.557443 GACGCAATATCTTCCCGCCG 61.557 60.000 0.00 0.00 0.00 6.46
7535 8323 2.224992 TGCCCACTCAAATGCTTCCTTA 60.225 45.455 0.00 0.00 0.00 2.69
7543 8331 7.361286 CCACTCAAATGCTTCCTTAGTTACTTC 60.361 40.741 0.00 0.00 0.00 3.01
7570 8358 3.368323 CCCATGCCAACCATCAAAACTAC 60.368 47.826 0.00 0.00 29.71 2.73
7576 8364 4.320494 GCCAACCATCAAAACTACAGACAG 60.320 45.833 0.00 0.00 0.00 3.51
7586 8374 2.522185 ACTACAGACAGACCCGCTAAA 58.478 47.619 0.00 0.00 0.00 1.85
7587 8375 2.230750 ACTACAGACAGACCCGCTAAAC 59.769 50.000 0.00 0.00 0.00 2.01
7588 8376 0.320697 ACAGACAGACCCGCTAAACC 59.679 55.000 0.00 0.00 0.00 3.27
7589 8377 0.608640 CAGACAGACCCGCTAAACCT 59.391 55.000 0.00 0.00 0.00 3.50
7590 8378 1.822990 CAGACAGACCCGCTAAACCTA 59.177 52.381 0.00 0.00 0.00 3.08
7591 8379 1.823610 AGACAGACCCGCTAAACCTAC 59.176 52.381 0.00 0.00 0.00 3.18
7592 8380 0.529378 ACAGACCCGCTAAACCTACG 59.471 55.000 0.00 0.00 0.00 3.51
7593 8381 0.179119 CAGACCCGCTAAACCTACGG 60.179 60.000 0.00 0.00 46.50 4.02
7599 8387 1.567504 CGCTAAACCTACGGACATGG 58.432 55.000 0.00 0.00 0.00 3.66
7600 8388 1.135527 CGCTAAACCTACGGACATGGA 59.864 52.381 0.00 0.00 0.00 3.41
7601 8389 2.223971 CGCTAAACCTACGGACATGGAT 60.224 50.000 0.00 0.00 0.00 3.41
7602 8390 3.131396 GCTAAACCTACGGACATGGATG 58.869 50.000 0.00 0.00 0.00 3.51
7603 8391 3.181469 GCTAAACCTACGGACATGGATGA 60.181 47.826 0.00 0.00 0.00 2.92
7604 8392 4.503296 GCTAAACCTACGGACATGGATGAT 60.503 45.833 0.00 0.00 0.00 2.45
7605 8393 5.279306 GCTAAACCTACGGACATGGATGATA 60.279 44.000 0.00 0.00 0.00 2.15
7606 8394 5.623956 AAACCTACGGACATGGATGATAA 57.376 39.130 0.00 0.00 0.00 1.75
7607 8395 5.623956 AACCTACGGACATGGATGATAAA 57.376 39.130 0.00 0.00 0.00 1.40
7608 8396 5.825593 ACCTACGGACATGGATGATAAAT 57.174 39.130 0.00 0.00 0.00 1.40
7609 8397 6.187727 ACCTACGGACATGGATGATAAATT 57.812 37.500 0.00 0.00 0.00 1.82
7610 8398 6.231211 ACCTACGGACATGGATGATAAATTC 58.769 40.000 0.00 0.00 0.00 2.17
7611 8399 6.183361 ACCTACGGACATGGATGATAAATTCA 60.183 38.462 0.00 0.00 39.12 2.57
7612 8400 6.369890 CCTACGGACATGGATGATAAATTCAG 59.630 42.308 0.00 0.00 37.89 3.02
7613 8401 5.065914 ACGGACATGGATGATAAATTCAGG 58.934 41.667 0.00 0.00 37.89 3.86
7614 8402 5.163205 ACGGACATGGATGATAAATTCAGGA 60.163 40.000 0.00 0.00 37.89 3.86
7615 8403 5.764686 CGGACATGGATGATAAATTCAGGAA 59.235 40.000 0.00 0.00 37.89 3.36
7616 8404 6.262944 CGGACATGGATGATAAATTCAGGAAA 59.737 38.462 0.00 0.00 37.89 3.13
7617 8405 7.040201 CGGACATGGATGATAAATTCAGGAAAT 60.040 37.037 0.00 0.00 37.89 2.17
7618 8406 8.302438 GGACATGGATGATAAATTCAGGAAATC 58.698 37.037 0.00 0.00 37.89 2.17
7619 8407 9.075678 GACATGGATGATAAATTCAGGAAATCT 57.924 33.333 0.00 0.00 37.89 2.40
7620 8408 9.430399 ACATGGATGATAAATTCAGGAAATCTT 57.570 29.630 0.00 0.00 37.89 2.40
7621 8409 9.909644 CATGGATGATAAATTCAGGAAATCTTC 57.090 33.333 0.00 0.00 37.89 2.87
7622 8410 9.650714 ATGGATGATAAATTCAGGAAATCTTCA 57.349 29.630 8.84 0.00 37.89 3.02
7623 8411 9.478238 TGGATGATAAATTCAGGAAATCTTCAA 57.522 29.630 8.84 0.00 37.89 2.69
7626 8414 9.813446 ATGATAAATTCAGGAAATCTTCAAAGC 57.187 29.630 0.00 0.00 37.89 3.51
7627 8415 9.028284 TGATAAATTCAGGAAATCTTCAAAGCT 57.972 29.630 0.00 0.00 0.00 3.74
7628 8416 9.866798 GATAAATTCAGGAAATCTTCAAAGCTT 57.133 29.630 0.00 0.00 0.00 3.74
7629 8417 7.958053 AAATTCAGGAAATCTTCAAAGCTTG 57.042 32.000 0.00 0.00 0.00 4.01
7630 8418 4.510038 TCAGGAAATCTTCAAAGCTTGC 57.490 40.909 0.00 0.00 0.00 4.01
7631 8419 3.256631 TCAGGAAATCTTCAAAGCTTGCC 59.743 43.478 0.00 0.00 31.24 4.52
7632 8420 3.257624 CAGGAAATCTTCAAAGCTTGCCT 59.742 43.478 0.00 0.76 40.10 4.75
7633 8421 3.899980 AGGAAATCTTCAAAGCTTGCCTT 59.100 39.130 0.00 0.00 36.94 4.35
7634 8422 3.992427 GGAAATCTTCAAAGCTTGCCTTG 59.008 43.478 0.00 0.00 33.01 3.61
7635 8423 4.502087 GGAAATCTTCAAAGCTTGCCTTGT 60.502 41.667 0.00 0.00 33.01 3.16
7636 8424 3.655276 ATCTTCAAAGCTTGCCTTGTG 57.345 42.857 0.00 0.00 33.01 3.33
7637 8425 2.653726 TCTTCAAAGCTTGCCTTGTGA 58.346 42.857 0.00 0.00 33.01 3.58
7638 8426 3.225104 TCTTCAAAGCTTGCCTTGTGAT 58.775 40.909 0.00 0.00 33.01 3.06
7639 8427 3.638160 TCTTCAAAGCTTGCCTTGTGATT 59.362 39.130 0.00 0.00 33.01 2.57
7640 8428 3.648339 TCAAAGCTTGCCTTGTGATTC 57.352 42.857 0.00 0.00 33.01 2.52
7641 8429 3.225104 TCAAAGCTTGCCTTGTGATTCT 58.775 40.909 0.00 0.00 33.01 2.40
7642 8430 3.254166 TCAAAGCTTGCCTTGTGATTCTC 59.746 43.478 0.00 0.00 33.01 2.87
7643 8431 1.446907 AGCTTGCCTTGTGATTCTCG 58.553 50.000 0.00 0.00 0.00 4.04
7644 8432 1.160137 GCTTGCCTTGTGATTCTCGT 58.840 50.000 0.00 0.00 0.00 4.18
7645 8433 1.135859 GCTTGCCTTGTGATTCTCGTG 60.136 52.381 0.00 0.00 0.00 4.35
7646 8434 2.146342 CTTGCCTTGTGATTCTCGTGT 58.854 47.619 0.00 0.00 0.00 4.49
7647 8435 1.511850 TGCCTTGTGATTCTCGTGTG 58.488 50.000 0.00 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 5.042463 TGTTCAATGTTGGAGTAACCTCA 57.958 39.130 0.00 0.00 39.64 3.86
112 113 5.941058 TGTTAAAGTCCAGTTGTTTGAGTGA 59.059 36.000 0.00 0.00 0.00 3.41
132 133 4.374689 TGGCTGTTCTGGGTAAATGTTA 57.625 40.909 0.00 0.00 0.00 2.41
362 363 4.712051 TTGCAGATGCCCTAGTAATCAT 57.288 40.909 1.72 0.00 41.18 2.45
400 401 1.136529 CGTTGACTCGTGCAAGTGATG 60.137 52.381 8.69 0.00 0.00 3.07
401 402 1.139989 CGTTGACTCGTGCAAGTGAT 58.860 50.000 8.69 0.00 0.00 3.06
403 404 1.083401 GCGTTGACTCGTGCAAGTG 60.083 57.895 0.00 0.00 0.00 3.16
404 405 0.880278 ATGCGTTGACTCGTGCAAGT 60.880 50.000 0.00 0.00 41.22 3.16
405 406 0.179240 GATGCGTTGACTCGTGCAAG 60.179 55.000 0.00 0.00 41.22 4.01
407 408 1.006220 AGATGCGTTGACTCGTGCA 60.006 52.632 0.00 0.00 42.22 4.57
409 410 1.284297 TGCAGATGCGTTGACTCGTG 61.284 55.000 0.00 0.00 45.83 4.35
410 411 0.599991 TTGCAGATGCGTTGACTCGT 60.600 50.000 0.00 0.00 45.83 4.18
411 412 0.512518 TTTGCAGATGCGTTGACTCG 59.487 50.000 0.00 0.00 45.83 4.18
412 413 1.264020 TGTTTGCAGATGCGTTGACTC 59.736 47.619 0.00 0.00 45.83 3.36
413 414 1.265095 CTGTTTGCAGATGCGTTGACT 59.735 47.619 0.00 0.00 45.28 3.41
414 415 1.264020 TCTGTTTGCAGATGCGTTGAC 59.736 47.619 0.00 0.00 45.94 3.18
415 416 1.592064 TCTGTTTGCAGATGCGTTGA 58.408 45.000 0.00 0.00 45.94 3.18
424 425 4.626604 TGCTTCTTTGTTTTCTGTTTGCAG 59.373 37.500 0.00 0.00 43.87 4.41
426 427 5.291614 TGATGCTTCTTTGTTTTCTGTTTGC 59.708 36.000 0.88 0.00 0.00 3.68
427 428 6.532657 AGTGATGCTTCTTTGTTTTCTGTTTG 59.467 34.615 0.88 0.00 0.00 2.93
428 429 6.633856 AGTGATGCTTCTTTGTTTTCTGTTT 58.366 32.000 0.88 0.00 0.00 2.83
429 430 6.212888 AGTGATGCTTCTTTGTTTTCTGTT 57.787 33.333 0.88 0.00 0.00 3.16
446 447 3.057806 TGCTTTGAGTCATGCAAGTGATG 60.058 43.478 15.94 0.00 32.12 3.07
447 448 3.151554 TGCTTTGAGTCATGCAAGTGAT 58.848 40.909 15.94 0.00 32.12 3.06
448 449 2.574450 TGCTTTGAGTCATGCAAGTGA 58.426 42.857 15.94 0.00 32.12 3.41
449 450 3.570926 ATGCTTTGAGTCATGCAAGTG 57.429 42.857 20.26 0.00 38.96 3.16
450 451 4.763793 AGTAATGCTTTGAGTCATGCAAGT 59.236 37.500 20.26 15.00 38.96 3.16
451 452 5.306532 AGTAATGCTTTGAGTCATGCAAG 57.693 39.130 20.26 10.96 38.96 4.01
453 454 4.761227 TCAAGTAATGCTTTGAGTCATGCA 59.239 37.500 19.17 19.17 39.83 3.96
457 458 6.691754 TTGTTCAAGTAATGCTTTGAGTCA 57.308 33.333 0.00 0.00 34.69 3.41
458 459 7.985634 TTTTGTTCAAGTAATGCTTTGAGTC 57.014 32.000 0.00 0.00 34.69 3.36
459 460 8.196771 TGATTTTGTTCAAGTAATGCTTTGAGT 58.803 29.630 0.00 0.00 34.69 3.41
460 461 8.482429 GTGATTTTGTTCAAGTAATGCTTTGAG 58.518 33.333 0.00 0.00 34.69 3.02
461 462 7.978414 TGTGATTTTGTTCAAGTAATGCTTTGA 59.022 29.630 0.00 0.00 34.69 2.69
462 463 8.129161 TGTGATTTTGTTCAAGTAATGCTTTG 57.871 30.769 0.00 0.00 34.69 2.77
463 464 8.891671 ATGTGATTTTGTTCAAGTAATGCTTT 57.108 26.923 0.00 0.00 34.69 3.51
464 465 7.326789 CGATGTGATTTTGTTCAAGTAATGCTT 59.673 33.333 0.00 0.00 38.08 3.91
465 466 6.803320 CGATGTGATTTTGTTCAAGTAATGCT 59.197 34.615 0.00 0.00 0.00 3.79
466 467 6.452872 GCGATGTGATTTTGTTCAAGTAATGC 60.453 38.462 0.00 0.00 0.00 3.56
467 468 6.033831 GGCGATGTGATTTTGTTCAAGTAATG 59.966 38.462 0.00 0.00 0.00 1.90
468 469 6.092748 GGCGATGTGATTTTGTTCAAGTAAT 58.907 36.000 0.00 0.00 0.00 1.89
469 470 5.009110 TGGCGATGTGATTTTGTTCAAGTAA 59.991 36.000 0.00 0.00 0.00 2.24
595 601 3.797039 TGGAGAGTTGGATTATCTTGCG 58.203 45.455 0.00 0.00 0.00 4.85
599 605 3.979347 AGGCATGGAGAGTTGGATTATCT 59.021 43.478 0.00 0.00 0.00 1.98
701 711 1.153706 CGTGGTCGCGATAAAGGGT 60.154 57.895 14.06 0.00 0.00 4.34
745 755 4.903010 CCGGGGGTGTAATCGGCG 62.903 72.222 0.00 0.00 35.95 6.46
764 774 1.209275 CGATCGCCAAGATGTCGGTC 61.209 60.000 0.26 0.00 40.26 4.79
900 915 4.034048 CCGTACATCTTTGCAGTGTATTCC 59.966 45.833 0.00 0.00 31.71 3.01
902 917 4.575885 ACCGTACATCTTTGCAGTGTATT 58.424 39.130 0.00 0.00 31.71 1.89
904 919 3.671008 ACCGTACATCTTTGCAGTGTA 57.329 42.857 0.00 0.00 0.00 2.90
1018 1033 5.174037 TCGGGTGATTGGATTAGTTTTCT 57.826 39.130 0.00 0.00 0.00 2.52
1019 1034 4.335594 CCTCGGGTGATTGGATTAGTTTTC 59.664 45.833 0.00 0.00 0.00 2.29
1020 1035 4.270008 CCTCGGGTGATTGGATTAGTTTT 58.730 43.478 0.00 0.00 0.00 2.43
1036 1051 3.121019 CTCGGTAAGAGCCTCGGG 58.879 66.667 0.00 0.00 40.54 5.14
1054 1069 1.359848 CACGGAACCGAGGAAGATTG 58.640 55.000 20.14 1.28 42.83 2.67
1156 1174 4.936823 ACCACACACCGTCGTCGC 62.937 66.667 0.00 0.00 35.54 5.19
1204 1228 5.617252 GCTAATTATACCCTGTGGCTTACA 58.383 41.667 0.00 0.00 37.78 2.41
1206 1230 4.589798 TCGCTAATTATACCCTGTGGCTTA 59.410 41.667 0.00 0.00 33.59 3.09
1324 1349 2.890766 TTTGGGTGAGGGTCGGAGC 61.891 63.158 0.00 0.00 0.00 4.70
1381 1406 4.368543 GTCGGTGGGGTGGTCGTC 62.369 72.222 0.00 0.00 0.00 4.20
1473 1498 0.793617 TTGGGAGAGGAGGGAAGAGT 59.206 55.000 0.00 0.00 0.00 3.24
1537 1566 0.103208 AGAGATTTCCTAGCCGCACG 59.897 55.000 0.00 0.00 0.00 5.34
1547 1576 1.069358 CGGGCTACAGGAGAGATTTCC 59.931 57.143 0.00 0.00 37.52 3.13
1656 1686 4.429108 TCGCACATCACTAAATCAATCGA 58.571 39.130 0.00 0.00 0.00 3.59
1674 1704 0.675083 TGGACGACTAAAACCTCGCA 59.325 50.000 0.00 0.00 32.98 5.10
1680 1710 7.170320 TGAAGTAAATCACTGGACGACTAAAAC 59.830 37.037 0.00 0.00 37.63 2.43
1698 1728 6.018262 CACACTCCTCAAATTCGTGAAGTAAA 60.018 38.462 0.00 0.00 0.00 2.01
1735 1772 0.324943 ATTCGTGTGAAGACAGGGGG 59.675 55.000 0.00 0.00 38.32 5.40
1737 1774 2.226437 CCAAATTCGTGTGAAGACAGGG 59.774 50.000 0.00 0.00 38.32 4.45
1749 1786 1.170442 CCTAAACGCCCCAAATTCGT 58.830 50.000 0.00 0.00 38.15 3.85
1750 1787 1.131693 GACCTAAACGCCCCAAATTCG 59.868 52.381 0.00 0.00 0.00 3.34
1898 1963 1.986882 AACAAGTTCAAGCCTGGGAG 58.013 50.000 0.00 0.00 0.00 4.30
1969 2035 2.726760 GAGTAGCACGCCTGATTATTCG 59.273 50.000 0.00 0.00 0.00 3.34
1998 2064 5.594317 GGGAAAAACCAGCACATATCATAGT 59.406 40.000 0.00 0.00 41.20 2.12
2004 2070 5.025453 AGATTGGGAAAAACCAGCACATAT 58.975 37.500 0.00 0.00 42.47 1.78
2005 2071 4.415596 AGATTGGGAAAAACCAGCACATA 58.584 39.130 0.00 0.00 42.47 2.29
2025 2091 5.630121 TGGAGCAAAATCTAAAACTGGAGA 58.370 37.500 0.00 0.00 0.00 3.71
2149 2215 1.535860 GGTCTTGCGCACACACAAATT 60.536 47.619 11.12 0.00 0.00 1.82
2150 2216 0.030638 GGTCTTGCGCACACACAAAT 59.969 50.000 11.12 0.00 0.00 2.32
2248 2324 1.229428 CGAGTTGAGAAGCTTTGGCA 58.771 50.000 0.00 0.00 41.70 4.92
2275 2351 3.769844 TGTTGCTACCTCTCTTCCTAAGG 59.230 47.826 0.00 0.00 36.21 2.69
2308 2384 2.700897 AGATTTAGACCCGTCCATCAGG 59.299 50.000 0.00 0.00 0.00 3.86
2414 2490 2.972713 TCTCCCTCCTATCAAAATCCCG 59.027 50.000 0.00 0.00 0.00 5.14
2490 2566 7.861629 AGAATAACCACCATCTCTTGTATCAA 58.138 34.615 0.00 0.00 0.00 2.57
2542 2618 1.751351 TGGTCGTGGATCATCTCTGTC 59.249 52.381 0.00 0.00 0.00 3.51
2577 2653 7.974504 AGAGTCTACACCTTTTCTAATTCCAA 58.025 34.615 0.00 0.00 0.00 3.53
2659 2735 4.880120 TCTTCATTGATGTTCTCAGCCATC 59.120 41.667 0.00 0.00 38.34 3.51
2833 2909 0.389166 GTGAAGGTGGAGCGTCTCTG 60.389 60.000 6.78 0.00 0.00 3.35
2880 2956 3.213206 TCACATTCCAACTGCTGTCTT 57.787 42.857 0.00 0.00 0.00 3.01
2912 2988 4.202101 CGAGTACTGCTCAGATCCTTCAAT 60.202 45.833 0.00 0.00 44.33 2.57
2974 3050 1.277273 TGTGTGCTCCTCCATTCAGAG 59.723 52.381 0.00 0.00 0.00 3.35
3011 3087 1.272490 AGCTCGACCATGAAAACTCGA 59.728 47.619 0.00 0.00 34.18 4.04
3028 3104 1.056700 AATCCTGCCGATACCCAGCT 61.057 55.000 0.00 0.00 0.00 4.24
3037 3113 2.539277 TACCCCTGGAATCCTGCCGA 62.539 60.000 0.00 0.00 0.00 5.54
3775 3851 0.609406 GTTCACCCCTTGAAGGAGCC 60.609 60.000 13.97 0.00 45.23 4.70
3859 3935 3.381908 CCTCCGCTACACTTGTAAGATCT 59.618 47.826 0.00 0.00 0.00 2.75
3994 4070 7.514573 AACATCAAACTTTGTACCGAAAAAC 57.485 32.000 1.44 0.00 0.00 2.43
4000 4076 8.073768 ACAAGAATAACATCAAACTTTGTACCG 58.926 33.333 1.44 0.00 0.00 4.02
4235 4311 3.074538 CCCAAAGGAAGAGAAAAGAGGGA 59.925 47.826 0.00 0.00 34.49 4.20
4286 4362 4.196193 TCACCTTCTTCAAACATTGACGT 58.804 39.130 0.00 0.00 39.87 4.34
4337 4424 8.594687 CAGAAAATTTGACAACAAAGTAGGTTG 58.405 33.333 3.91 3.91 46.84 3.77
4338 4425 7.763985 CCAGAAAATTTGACAACAAAGTAGGTT 59.236 33.333 0.00 0.00 46.84 3.50
4339 4426 7.264947 CCAGAAAATTTGACAACAAAGTAGGT 58.735 34.615 0.00 0.00 46.84 3.08
4340 4427 6.701400 CCCAGAAAATTTGACAACAAAGTAGG 59.299 38.462 0.00 0.00 46.84 3.18
4343 4431 4.875536 GCCCAGAAAATTTGACAACAAAGT 59.124 37.500 0.00 0.00 46.84 2.66
4357 4445 1.642112 TCATGCCATTGCCCAGAAAA 58.358 45.000 0.00 0.00 36.33 2.29
4459 4548 3.006323 TGCAACTAAACGGAATGGCAATT 59.994 39.130 0.00 0.00 0.00 2.32
4487 4577 7.876936 ATGTGAGATTTATGCAGATTGAAGT 57.123 32.000 0.00 0.00 0.00 3.01
4488 4578 8.622157 AGAATGTGAGATTTATGCAGATTGAAG 58.378 33.333 0.00 0.00 0.00 3.02
4489 4579 8.515695 AGAATGTGAGATTTATGCAGATTGAA 57.484 30.769 0.00 0.00 0.00 2.69
4490 4580 8.515695 AAGAATGTGAGATTTATGCAGATTGA 57.484 30.769 0.00 0.00 0.00 2.57
4601 4695 9.712305 TTTCAGCTAGCTTCATCTATTATTACC 57.288 33.333 16.46 0.00 0.00 2.85
4796 4890 6.360618 ACATGGGGAAATTGCAAAGTAAAAA 58.639 32.000 1.71 0.00 0.00 1.94
5009 5103 9.522804 AGAAGACAGATATCATAAACGAAGAAC 57.477 33.333 5.32 0.00 0.00 3.01
5041 5136 4.339748 GAAAGGAAAAGAGGCCTCAGAAT 58.660 43.478 33.90 17.04 32.07 2.40
5302 5402 8.812972 ACTACCTCTGTTCAATAATGTAAGACA 58.187 33.333 0.00 0.00 0.00 3.41
5314 5414 5.675684 TCATATGCACTACCTCTGTTCAA 57.324 39.130 0.00 0.00 0.00 2.69
5329 5429 5.808042 TTCAGAGTTCAAGCTTCATATGC 57.192 39.130 0.00 0.00 0.00 3.14
5354 5489 7.681939 TGAGTTTCAATTAGCGTAAAAGGAT 57.318 32.000 0.00 0.00 0.00 3.24
5355 5490 7.499321 TTGAGTTTCAATTAGCGTAAAAGGA 57.501 32.000 0.00 0.00 30.26 3.36
5356 5491 7.646130 TGTTTGAGTTTCAATTAGCGTAAAAGG 59.354 33.333 0.00 0.00 36.11 3.11
5357 5492 8.555166 TGTTTGAGTTTCAATTAGCGTAAAAG 57.445 30.769 0.00 0.00 36.11 2.27
5358 5493 8.912787 TTGTTTGAGTTTCAATTAGCGTAAAA 57.087 26.923 0.00 0.00 36.11 1.52
5359 5494 8.912787 TTTGTTTGAGTTTCAATTAGCGTAAA 57.087 26.923 0.00 0.00 36.11 2.01
5362 5497 6.809196 TGTTTTGTTTGAGTTTCAATTAGCGT 59.191 30.769 0.00 0.00 36.11 5.07
5363 5498 7.215696 TGTTTTGTTTGAGTTTCAATTAGCG 57.784 32.000 0.00 0.00 36.11 4.26
5427 5567 4.380841 CAGAAAATGCATGCATAGTGGT 57.619 40.909 32.36 14.71 35.31 4.16
5537 5682 6.594788 ACATCTCCTTTTAAATGTGCACAT 57.405 33.333 26.61 26.61 38.41 3.21
5574 5719 3.568007 TGCCAAGAATCAACAGTACAACC 59.432 43.478 0.00 0.00 0.00 3.77
5607 5752 2.190538 TCTGCTCATCTTCCACATCCA 58.809 47.619 0.00 0.00 0.00 3.41
5672 6068 5.819825 ATAGCTAACTTGCAAAAGGCTAC 57.180 39.130 18.52 0.97 45.15 3.58
5712 6111 6.074888 CGTGTTTTTCTTTCAAGCATACCAAG 60.075 38.462 0.00 0.00 0.00 3.61
5737 6136 7.336176 CCTTCCCTAGTAACTTCACCAAAATAC 59.664 40.741 0.00 0.00 0.00 1.89
5786 6185 9.822727 TGGATAACTAGATATCTGTACCATGAA 57.177 33.333 15.79 0.00 33.63 2.57
5831 6230 9.277783 GCTGTCAACAAATGGATAACTAGATAT 57.722 33.333 0.00 0.00 0.00 1.63
5832 6231 8.486210 AGCTGTCAACAAATGGATAACTAGATA 58.514 33.333 0.00 0.00 0.00 1.98
5833 6232 7.341805 AGCTGTCAACAAATGGATAACTAGAT 58.658 34.615 0.00 0.00 0.00 1.98
5834 6233 6.711277 AGCTGTCAACAAATGGATAACTAGA 58.289 36.000 0.00 0.00 0.00 2.43
5835 6234 6.992063 AGCTGTCAACAAATGGATAACTAG 57.008 37.500 0.00 0.00 0.00 2.57
5836 6235 6.150976 CCAAGCTGTCAACAAATGGATAACTA 59.849 38.462 0.00 0.00 0.00 2.24
5837 6236 5.047802 CCAAGCTGTCAACAAATGGATAACT 60.048 40.000 0.00 0.00 0.00 2.24
5838 6237 5.048083 TCCAAGCTGTCAACAAATGGATAAC 60.048 40.000 0.00 0.00 31.31 1.89
5839 6238 5.076182 TCCAAGCTGTCAACAAATGGATAA 58.924 37.500 0.00 0.00 31.31 1.75
5840 6239 4.661222 TCCAAGCTGTCAACAAATGGATA 58.339 39.130 0.00 0.00 31.31 2.59
5841 6240 3.499338 TCCAAGCTGTCAACAAATGGAT 58.501 40.909 0.00 0.00 31.31 3.41
5842 6241 2.886523 CTCCAAGCTGTCAACAAATGGA 59.113 45.455 9.52 9.52 33.62 3.41
5843 6242 2.624838 ACTCCAAGCTGTCAACAAATGG 59.375 45.455 0.00 0.00 0.00 3.16
5844 6243 3.067180 ACACTCCAAGCTGTCAACAAATG 59.933 43.478 0.00 0.00 0.00 2.32
5845 6244 3.290710 ACACTCCAAGCTGTCAACAAAT 58.709 40.909 0.00 0.00 0.00 2.32
5846 6245 2.722094 ACACTCCAAGCTGTCAACAAA 58.278 42.857 0.00 0.00 0.00 2.83
5847 6246 2.418368 ACACTCCAAGCTGTCAACAA 57.582 45.000 0.00 0.00 0.00 2.83
5848 6247 3.769739 ATACACTCCAAGCTGTCAACA 57.230 42.857 0.00 0.00 0.00 3.33
5849 6248 4.515191 TGAAATACACTCCAAGCTGTCAAC 59.485 41.667 0.00 0.00 0.00 3.18
5850 6249 4.713553 TGAAATACACTCCAAGCTGTCAA 58.286 39.130 0.00 0.00 0.00 3.18
5851 6250 4.040339 TCTGAAATACACTCCAAGCTGTCA 59.960 41.667 0.00 0.00 0.00 3.58
5852 6251 4.569943 TCTGAAATACACTCCAAGCTGTC 58.430 43.478 0.00 0.00 0.00 3.51
5853 6252 4.623932 TCTGAAATACACTCCAAGCTGT 57.376 40.909 0.00 0.00 0.00 4.40
5854 6253 6.404074 GGAATTCTGAAATACACTCCAAGCTG 60.404 42.308 5.23 0.00 0.00 4.24
5855 6254 5.649831 GGAATTCTGAAATACACTCCAAGCT 59.350 40.000 5.23 0.00 0.00 3.74
5856 6255 5.649831 AGGAATTCTGAAATACACTCCAAGC 59.350 40.000 5.23 0.00 0.00 4.01
5857 6256 7.693969 AAGGAATTCTGAAATACACTCCAAG 57.306 36.000 5.23 0.00 0.00 3.61
5858 6257 9.177608 CATAAGGAATTCTGAAATACACTCCAA 57.822 33.333 5.23 0.00 0.00 3.53
5859 6258 8.328758 ACATAAGGAATTCTGAAATACACTCCA 58.671 33.333 5.23 0.00 0.00 3.86
5952 6353 7.109501 ACATATACTTGTAGGCATCACAAACA 58.890 34.615 0.00 0.00 35.57 2.83
6057 6458 1.281899 GATCCTCGCCAAAGAGTTCG 58.718 55.000 0.00 0.00 36.56 3.95
6117 6518 5.365619 TCTTTGTTGAAGTTGGAGTAGGAC 58.634 41.667 0.00 0.00 36.70 3.85
6120 6521 5.368989 ACCTCTTTGTTGAAGTTGGAGTAG 58.631 41.667 0.00 0.00 36.70 2.57
6145 6546 5.925969 CACAAAAGTTGAATATCCGGCTTTT 59.074 36.000 0.00 1.11 36.84 2.27
6151 6552 4.396166 AGGAGCACAAAAGTTGAATATCCG 59.604 41.667 0.00 0.00 32.20 4.18
6225 6628 5.061560 GTCAAGTTTCTTAGCAGAGATGACG 59.938 44.000 5.58 0.00 0.00 4.35
6247 6650 5.888105 TCTTGTTATACGCCTGTAAGAGTC 58.112 41.667 0.00 0.00 34.07 3.36
6254 6657 4.083484 GCAAAGTTCTTGTTATACGCCTGT 60.083 41.667 0.00 0.00 0.00 4.00
6344 6747 1.062685 CTCCGGAGTCGTCACGATG 59.937 63.158 24.04 0.00 38.42 3.84
6380 6783 2.604079 TTCGGCGGGGGTGACTTA 60.604 61.111 7.21 0.00 0.00 2.24
6434 6837 3.023949 GCACCGAGCTCCATGGAGT 62.024 63.158 36.32 25.23 43.70 3.85
6452 6855 2.549754 AGCTTGAAAACAGATCACGGTG 59.450 45.455 0.56 0.56 0.00 4.94
6532 6935 1.002624 GACAAGCGGATCAACCCCA 60.003 57.895 0.00 0.00 34.64 4.96
6541 6944 2.974845 TTTTTCGACGACAAGCGGA 58.025 47.368 0.00 0.00 46.49 5.54
6592 6995 3.257873 TGCCGTTTCATCAAAACATCCAT 59.742 39.130 2.05 0.00 46.33 3.41
6644 7048 4.221217 TACATGCATGCACGCGCG 62.221 61.111 30.96 30.96 42.97 6.86
6667 7071 1.220817 CCCAAACACAAATGCACCGC 61.221 55.000 0.00 0.00 0.00 5.68
6668 7072 1.220817 GCCCAAACACAAATGCACCG 61.221 55.000 0.00 0.00 0.00 4.94
6670 7074 0.936600 GTGCCCAAACACAAATGCAC 59.063 50.000 0.00 0.00 41.75 4.57
6673 7077 2.211806 CCAAGTGCCCAAACACAAATG 58.788 47.619 0.00 0.00 43.23 2.32
6735 7139 1.374252 GTGATCACACTTCGCCGGT 60.374 57.895 21.07 0.00 42.99 5.28
6792 7196 3.578688 GGCAAGCCACTGTAAGATTTTG 58.421 45.455 6.14 0.00 37.43 2.44
6795 7199 1.453155 CGGCAAGCCACTGTAAGATT 58.547 50.000 12.19 0.00 37.43 2.40
6837 7241 7.410174 TCTATATTTTCACCATGGGTCTTTGT 58.590 34.615 18.09 0.00 31.02 2.83
6883 7287 9.958125 TCAGATATCTATATATTCACCATGGGT 57.042 33.333 18.09 0.00 35.62 4.51
6900 7304 9.846248 GCAAGTTTATTTTTGTGTCAGATATCT 57.154 29.630 0.00 0.00 0.00 1.98
6901 7305 9.624697 TGCAAGTTTATTTTTGTGTCAGATATC 57.375 29.630 0.00 0.00 0.00 1.63
6902 7306 9.410556 GTGCAAGTTTATTTTTGTGTCAGATAT 57.589 29.630 0.00 0.00 0.00 1.63
6903 7307 7.589587 CGTGCAAGTTTATTTTTGTGTCAGATA 59.410 33.333 0.00 0.00 0.00 1.98
6904 7308 6.417635 CGTGCAAGTTTATTTTTGTGTCAGAT 59.582 34.615 0.00 0.00 0.00 2.90
6905 7309 5.741510 CGTGCAAGTTTATTTTTGTGTCAGA 59.258 36.000 0.00 0.00 0.00 3.27
6906 7310 5.051774 CCGTGCAAGTTTATTTTTGTGTCAG 60.052 40.000 0.00 0.00 0.00 3.51
6907 7311 4.800993 CCGTGCAAGTTTATTTTTGTGTCA 59.199 37.500 0.00 0.00 0.00 3.58
6908 7312 4.801516 ACCGTGCAAGTTTATTTTTGTGTC 59.198 37.500 0.00 0.00 0.00 3.67
6909 7313 4.749976 ACCGTGCAAGTTTATTTTTGTGT 58.250 34.783 0.00 0.00 0.00 3.72
6910 7314 6.253727 TGTTACCGTGCAAGTTTATTTTTGTG 59.746 34.615 0.00 0.00 0.00 3.33
6911 7315 6.331061 TGTTACCGTGCAAGTTTATTTTTGT 58.669 32.000 0.00 0.00 0.00 2.83
6912 7316 6.814076 TGTTACCGTGCAAGTTTATTTTTG 57.186 33.333 0.00 0.00 0.00 2.44
6913 7317 6.981559 ACATGTTACCGTGCAAGTTTATTTTT 59.018 30.769 0.00 0.00 0.00 1.94
6914 7318 6.508777 ACATGTTACCGTGCAAGTTTATTTT 58.491 32.000 0.00 0.00 0.00 1.82
6915 7319 6.079424 ACATGTTACCGTGCAAGTTTATTT 57.921 33.333 0.00 0.00 0.00 1.40
6916 7320 5.699097 ACATGTTACCGTGCAAGTTTATT 57.301 34.783 0.00 0.00 0.00 1.40
6917 7321 6.091713 GTCTACATGTTACCGTGCAAGTTTAT 59.908 38.462 2.30 0.00 0.00 1.40
7010 7509 4.114794 GACAATTTGCATATGCCACTTCC 58.885 43.478 24.54 5.38 41.18 3.46
7058 7557 0.326927 TCTTCGTCAACCCCATTCCC 59.673 55.000 0.00 0.00 0.00 3.97
7209 7710 5.759506 TGGAAAACAATAAACGAAGCTCA 57.240 34.783 0.00 0.00 0.00 4.26
7265 7766 3.042560 GTCACAAGCAAGGTGGCC 58.957 61.111 0.00 0.00 34.88 5.36
7268 7769 2.086869 CATAGGGTCACAAGCAAGGTG 58.913 52.381 0.00 0.00 37.60 4.00
7273 7774 0.108186 CGAGCATAGGGTCACAAGCA 60.108 55.000 7.42 0.00 41.62 3.91
7332 7844 6.943718 TGTATAAACTTGTAGGGTGAAAAGGG 59.056 38.462 0.00 0.00 0.00 3.95
7337 7849 8.927675 AATGTTGTATAAACTTGTAGGGTGAA 57.072 30.769 0.00 0.00 0.00 3.18
7398 8186 7.764141 TTTGTCCCAACTATAACCTTTTACC 57.236 36.000 0.00 0.00 0.00 2.85
7468 8256 1.557443 CGGCGGGAAGATATTGCGTC 61.557 60.000 0.00 0.00 0.00 5.19
7487 8275 9.740710 ACAAGTTTCCCTAATATCATTATAGCC 57.259 33.333 0.00 0.00 0.00 3.93
7535 8323 2.308570 TGGCATGGGTGATGAAGTAACT 59.691 45.455 0.00 0.00 33.31 2.24
7543 8331 0.748450 GATGGTTGGCATGGGTGATG 59.252 55.000 0.00 0.00 34.84 3.07
7570 8358 0.608640 AGGTTTAGCGGGTCTGTCTG 59.391 55.000 0.00 0.00 0.00 3.51
7586 8374 6.183361 TGAATTTATCATCCATGTCCGTAGGT 60.183 38.462 0.00 0.00 40.80 3.08
7587 8375 6.230472 TGAATTTATCATCCATGTCCGTAGG 58.770 40.000 0.00 0.00 41.22 3.18
7588 8376 6.369890 CCTGAATTTATCATCCATGTCCGTAG 59.630 42.308 0.00 0.00 37.44 3.51
7589 8377 6.042666 TCCTGAATTTATCATCCATGTCCGTA 59.957 38.462 0.00 0.00 37.44 4.02
7590 8378 5.065914 CCTGAATTTATCATCCATGTCCGT 58.934 41.667 0.00 0.00 37.44 4.69
7591 8379 5.308014 TCCTGAATTTATCATCCATGTCCG 58.692 41.667 0.00 0.00 37.44 4.79
7592 8380 7.587037 TTTCCTGAATTTATCATCCATGTCC 57.413 36.000 0.00 0.00 37.44 4.02
7593 8381 9.075678 AGATTTCCTGAATTTATCATCCATGTC 57.924 33.333 0.00 0.00 37.44 3.06
7594 8382 9.430399 AAGATTTCCTGAATTTATCATCCATGT 57.570 29.630 0.00 0.00 37.44 3.21
7595 8383 9.909644 GAAGATTTCCTGAATTTATCATCCATG 57.090 33.333 0.00 0.00 37.44 3.66
7596 8384 9.650714 TGAAGATTTCCTGAATTTATCATCCAT 57.349 29.630 0.00 0.00 37.44 3.41
7597 8385 9.478238 TTGAAGATTTCCTGAATTTATCATCCA 57.522 29.630 0.00 0.00 37.44 3.41
7600 8388 9.813446 GCTTTGAAGATTTCCTGAATTTATCAT 57.187 29.630 0.00 0.00 37.44 2.45
7601 8389 9.028284 AGCTTTGAAGATTTCCTGAATTTATCA 57.972 29.630 0.00 0.00 36.38 2.15
7602 8390 9.866798 AAGCTTTGAAGATTTCCTGAATTTATC 57.133 29.630 0.00 0.00 28.76 1.75
7603 8391 9.649167 CAAGCTTTGAAGATTTCCTGAATTTAT 57.351 29.630 0.00 0.00 31.24 1.40
7604 8392 7.599998 GCAAGCTTTGAAGATTTCCTGAATTTA 59.400 33.333 0.00 0.00 31.24 1.40
7605 8393 6.426025 GCAAGCTTTGAAGATTTCCTGAATTT 59.574 34.615 0.00 0.00 31.24 1.82
7606 8394 5.930569 GCAAGCTTTGAAGATTTCCTGAATT 59.069 36.000 0.00 0.00 31.24 2.17
7607 8395 5.476614 GCAAGCTTTGAAGATTTCCTGAAT 58.523 37.500 0.00 0.00 31.24 2.57
7608 8396 4.262164 GGCAAGCTTTGAAGATTTCCTGAA 60.262 41.667 0.00 0.00 35.34 3.02
7609 8397 3.256631 GGCAAGCTTTGAAGATTTCCTGA 59.743 43.478 0.00 0.00 35.34 3.86
7610 8398 3.257624 AGGCAAGCTTTGAAGATTTCCTG 59.742 43.478 11.21 0.00 44.34 3.86
7611 8399 3.504375 AGGCAAGCTTTGAAGATTTCCT 58.496 40.909 7.03 7.03 41.95 3.36
7612 8400 3.949842 AGGCAAGCTTTGAAGATTTCC 57.050 42.857 0.00 2.80 37.87 3.13
7613 8401 4.446719 CACAAGGCAAGCTTTGAAGATTTC 59.553 41.667 21.42 0.00 36.65 2.17
7614 8402 4.099881 TCACAAGGCAAGCTTTGAAGATTT 59.900 37.500 21.42 0.00 36.65 2.17
7615 8403 3.638160 TCACAAGGCAAGCTTTGAAGATT 59.362 39.130 21.42 0.00 36.65 2.40
7616 8404 3.225104 TCACAAGGCAAGCTTTGAAGAT 58.775 40.909 21.42 0.00 36.65 2.40
7617 8405 2.653726 TCACAAGGCAAGCTTTGAAGA 58.346 42.857 21.42 15.36 36.65 2.87
7618 8406 3.655276 ATCACAAGGCAAGCTTTGAAG 57.345 42.857 21.42 13.63 36.65 3.02
7619 8407 3.638160 AGAATCACAAGGCAAGCTTTGAA 59.362 39.130 21.42 10.55 36.65 2.69
7620 8408 3.225104 AGAATCACAAGGCAAGCTTTGA 58.775 40.909 21.42 0.00 36.65 2.69
7621 8409 3.572584 GAGAATCACAAGGCAAGCTTTG 58.427 45.455 14.32 14.32 38.70 2.77
7622 8410 2.227388 CGAGAATCACAAGGCAAGCTTT 59.773 45.455 0.00 0.00 33.17 3.51
7623 8411 1.808945 CGAGAATCACAAGGCAAGCTT 59.191 47.619 0.00 0.00 33.17 3.74
7624 8412 1.271054 ACGAGAATCACAAGGCAAGCT 60.271 47.619 0.00 0.00 33.17 3.74
7625 8413 1.135859 CACGAGAATCACAAGGCAAGC 60.136 52.381 0.00 0.00 33.17 4.01
7626 8414 2.096069 CACACGAGAATCACAAGGCAAG 60.096 50.000 0.00 0.00 33.17 4.01
7627 8415 1.872952 CACACGAGAATCACAAGGCAA 59.127 47.619 0.00 0.00 33.17 4.52
7628 8416 1.511850 CACACGAGAATCACAAGGCA 58.488 50.000 0.00 0.00 33.17 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.