Multiple sequence alignment - TraesCS4D01G311100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G311100 chr4D 100.000 3216 0 0 1 3216 477885049 477881834 0.000000e+00 5939.0
1 TraesCS4D01G311100 chr4D 96.745 2642 45 15 604 3216 433387019 433384390 0.000000e+00 4364.0
2 TraesCS4D01G311100 chr4D 93.103 261 10 6 604 859 477875823 477876080 3.030000e-100 375.0
3 TraesCS4D01G311100 chr4D 91.635 263 12 7 604 859 433378511 433378770 3.950000e-94 355.0
4 TraesCS4D01G311100 chr5D 97.962 2552 42 7 670 3216 375442802 375445348 0.000000e+00 4416.0
5 TraesCS4D01G311100 chr5D 93.900 2623 98 24 605 3216 449913470 449916041 0.000000e+00 3901.0
6 TraesCS4D01G311100 chr5D 94.118 340 14 4 603 938 526623020 526622683 2.210000e-141 512.0
7 TraesCS4D01G311100 chr5D 97.388 268 7 0 746 1013 375442805 375442538 1.050000e-124 457.0
8 TraesCS4D01G311100 chr5D 92.607 257 12 5 604 856 375448969 375448716 2.360000e-96 363.0
9 TraesCS4D01G311100 chr4A 96.446 2617 64 11 604 3216 573670097 573672688 0.000000e+00 4290.0
10 TraesCS4D01G311100 chr4A 96.332 2617 75 10 604 3216 608866351 608863752 0.000000e+00 4281.0
11 TraesCS4D01G311100 chr4A 91.698 265 14 6 603 862 573683393 573683132 8.480000e-96 361.0
12 TraesCS4D01G311100 chr3A 96.274 2630 63 13 596 3216 714630143 714632746 0.000000e+00 4281.0
13 TraesCS4D01G311100 chr5A 94.825 2338 102 12 877 3206 396679480 396677154 0.000000e+00 3629.0
14 TraesCS4D01G311100 chr3D 91.752 2631 135 37 604 3216 149758703 149761269 0.000000e+00 3581.0
15 TraesCS4D01G311100 chr3D 87.500 176 14 6 280 452 79558536 79558706 2.530000e-46 196.0
16 TraesCS4D01G311100 chr2B 95.438 1600 57 8 1514 3113 685368725 685367142 0.000000e+00 2536.0
17 TraesCS4D01G311100 chr4B 94.280 1521 73 12 800 2316 14640307 14638797 0.000000e+00 2314.0
18 TraesCS4D01G311100 chr4B 95.934 910 34 2 2308 3216 14630829 14629922 0.000000e+00 1472.0
19 TraesCS4D01G311100 chr2A 88.372 172 17 3 281 452 31956547 31956715 1.510000e-48 204.0
20 TraesCS4D01G311100 chr6D 87.931 174 15 5 281 452 406391527 406391358 1.960000e-47 200.0
21 TraesCS4D01G311100 chr2D 88.304 171 14 5 284 452 425286932 425287098 1.960000e-47 200.0
22 TraesCS4D01G311100 chr2D 86.957 184 12 11 282 460 544477336 544477160 2.530000e-46 196.0
23 TraesCS4D01G311100 chr2D 86.740 181 17 6 280 458 316883869 316884044 9.100000e-46 195.0
24 TraesCS4D01G311100 chr3B 87.429 175 18 4 278 451 628473375 628473546 7.040000e-47 198.0
25 TraesCS4D01G311100 chr7D 86.667 180 18 5 276 453 192936011 192936186 9.100000e-46 195.0
26 TraesCS4D01G311100 chr7D 85.638 188 19 7 281 466 500255159 500255340 1.180000e-44 191.0
27 TraesCS4D01G311100 chr7A 93.333 45 3 0 1051 1095 42929752 42929796 2.070000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G311100 chr4D 477881834 477885049 3215 True 5939 5939 100.000 1 3216 1 chr4D.!!$R2 3215
1 TraesCS4D01G311100 chr4D 433384390 433387019 2629 True 4364 4364 96.745 604 3216 1 chr4D.!!$R1 2612
2 TraesCS4D01G311100 chr5D 375442802 375445348 2546 False 4416 4416 97.962 670 3216 1 chr5D.!!$F1 2546
3 TraesCS4D01G311100 chr5D 449913470 449916041 2571 False 3901 3901 93.900 605 3216 1 chr5D.!!$F2 2611
4 TraesCS4D01G311100 chr4A 573670097 573672688 2591 False 4290 4290 96.446 604 3216 1 chr4A.!!$F1 2612
5 TraesCS4D01G311100 chr4A 608863752 608866351 2599 True 4281 4281 96.332 604 3216 1 chr4A.!!$R2 2612
6 TraesCS4D01G311100 chr3A 714630143 714632746 2603 False 4281 4281 96.274 596 3216 1 chr3A.!!$F1 2620
7 TraesCS4D01G311100 chr5A 396677154 396679480 2326 True 3629 3629 94.825 877 3206 1 chr5A.!!$R1 2329
8 TraesCS4D01G311100 chr3D 149758703 149761269 2566 False 3581 3581 91.752 604 3216 1 chr3D.!!$F2 2612
9 TraesCS4D01G311100 chr2B 685367142 685368725 1583 True 2536 2536 95.438 1514 3113 1 chr2B.!!$R1 1599
10 TraesCS4D01G311100 chr4B 14638797 14640307 1510 True 2314 2314 94.280 800 2316 1 chr4B.!!$R2 1516
11 TraesCS4D01G311100 chr4B 14629922 14630829 907 True 1472 1472 95.934 2308 3216 1 chr4B.!!$R1 908

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
534 535 0.036732 TTTGATGGCCGACAGCTTCT 59.963 50.0 0.0 0.0 43.05 2.85 F
535 536 0.391661 TTGATGGCCGACAGCTTCTC 60.392 55.0 0.0 0.0 43.05 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1361 1383 0.818296 ACCTCAGTAGCACATCCGAC 59.182 55.000 0.0 0.0 0.0 4.79 R
2312 2342 9.363763 CAGTTCATAGGCAGTTCATATATAGTG 57.636 37.037 0.0 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 9.877178 ATAGCCAGCTATATACAAGTTATTCAC 57.123 33.333 10.42 0.00 37.47 3.18
70 71 7.735917 AGCCAGCTATATACAAGTTATTCACA 58.264 34.615 0.00 0.00 0.00 3.58
71 72 7.657761 AGCCAGCTATATACAAGTTATTCACAC 59.342 37.037 0.00 0.00 0.00 3.82
72 73 7.095187 GCCAGCTATATACAAGTTATTCACACC 60.095 40.741 0.00 0.00 0.00 4.16
73 74 8.150945 CCAGCTATATACAAGTTATTCACACCT 58.849 37.037 0.00 0.00 0.00 4.00
80 81 6.267496 ACAAGTTATTCACACCTATTTGGC 57.733 37.500 0.00 0.00 40.22 4.52
81 82 5.185056 ACAAGTTATTCACACCTATTTGGCC 59.815 40.000 0.00 0.00 40.22 5.36
82 83 5.193099 AGTTATTCACACCTATTTGGCCT 57.807 39.130 3.32 0.00 40.22 5.19
83 84 5.580022 AGTTATTCACACCTATTTGGCCTT 58.420 37.500 3.32 0.00 40.22 4.35
84 85 6.727394 AGTTATTCACACCTATTTGGCCTTA 58.273 36.000 3.32 0.00 40.22 2.69
85 86 7.179269 AGTTATTCACACCTATTTGGCCTTAA 58.821 34.615 3.32 0.00 40.22 1.85
86 87 7.339466 AGTTATTCACACCTATTTGGCCTTAAG 59.661 37.037 3.32 0.00 40.22 1.85
87 88 4.650972 TCACACCTATTTGGCCTTAAGT 57.349 40.909 3.32 0.00 40.22 2.24
88 89 4.993028 TCACACCTATTTGGCCTTAAGTT 58.007 39.130 3.32 0.00 40.22 2.66
89 90 5.390387 TCACACCTATTTGGCCTTAAGTTT 58.610 37.500 3.32 0.00 40.22 2.66
90 91 5.836358 TCACACCTATTTGGCCTTAAGTTTT 59.164 36.000 3.32 0.00 40.22 2.43
91 92 6.325286 TCACACCTATTTGGCCTTAAGTTTTT 59.675 34.615 3.32 0.00 40.22 1.94
109 110 4.559862 TTTTTGTTTTTCCCTGAAGCCA 57.440 36.364 0.00 0.00 0.00 4.75
110 111 3.535280 TTTGTTTTTCCCTGAAGCCAC 57.465 42.857 0.00 0.00 0.00 5.01
111 112 1.408969 TGTTTTTCCCTGAAGCCACC 58.591 50.000 0.00 0.00 0.00 4.61
112 113 0.313987 GTTTTTCCCTGAAGCCACCG 59.686 55.000 0.00 0.00 0.00 4.94
113 114 0.825840 TTTTTCCCTGAAGCCACCGG 60.826 55.000 0.00 0.00 0.00 5.28
114 115 2.706952 TTTTCCCTGAAGCCACCGGG 62.707 60.000 6.32 0.00 38.07 5.73
122 123 3.182996 AGCCACCGGGGTTTTCCT 61.183 61.111 6.32 0.00 44.14 3.36
123 124 2.203582 GCCACCGGGGTTTTCCTT 60.204 61.111 6.32 0.00 40.46 3.36
124 125 1.835267 GCCACCGGGGTTTTCCTTT 60.835 57.895 6.32 0.00 40.46 3.11
125 126 1.812686 GCCACCGGGGTTTTCCTTTC 61.813 60.000 6.32 0.00 40.46 2.62
126 127 1.520600 CCACCGGGGTTTTCCTTTCG 61.521 60.000 6.32 0.00 40.46 3.46
127 128 1.900016 ACCGGGGTTTTCCTTTCGC 60.900 57.895 6.32 0.00 40.46 4.70
128 129 2.559330 CGGGGTTTTCCTTTCGCG 59.441 61.111 0.00 0.00 40.46 5.87
129 130 2.959372 GGGGTTTTCCTTTCGCGG 59.041 61.111 6.13 0.00 40.46 6.46
130 131 1.900016 GGGGTTTTCCTTTCGCGGT 60.900 57.895 6.13 0.00 40.46 5.68
131 132 1.457823 GGGGTTTTCCTTTCGCGGTT 61.458 55.000 6.13 0.00 40.46 4.44
132 133 0.386476 GGGTTTTCCTTTCGCGGTTT 59.614 50.000 6.13 0.00 40.46 3.27
133 134 1.202440 GGGTTTTCCTTTCGCGGTTTT 60.202 47.619 6.13 0.00 40.46 2.43
134 135 2.542597 GGTTTTCCTTTCGCGGTTTTT 58.457 42.857 6.13 0.00 36.94 1.94
135 136 3.490590 GGGTTTTCCTTTCGCGGTTTTTA 60.491 43.478 6.13 0.00 40.46 1.52
136 137 4.300803 GGTTTTCCTTTCGCGGTTTTTAT 58.699 39.130 6.13 0.00 36.94 1.40
137 138 4.746115 GGTTTTCCTTTCGCGGTTTTTATT 59.254 37.500 6.13 0.00 36.94 1.40
138 139 5.332732 GGTTTTCCTTTCGCGGTTTTTATTG 60.333 40.000 6.13 0.00 36.94 1.90
139 140 4.832590 TTCCTTTCGCGGTTTTTATTGA 57.167 36.364 6.13 0.00 0.00 2.57
140 141 4.832590 TCCTTTCGCGGTTTTTATTGAA 57.167 36.364 6.13 0.00 0.00 2.69
141 142 5.379732 TCCTTTCGCGGTTTTTATTGAAT 57.620 34.783 6.13 0.00 0.00 2.57
142 143 6.497785 TCCTTTCGCGGTTTTTATTGAATA 57.502 33.333 6.13 0.00 0.00 1.75
143 144 6.548171 TCCTTTCGCGGTTTTTATTGAATAG 58.452 36.000 6.13 0.00 0.00 1.73
144 145 5.741982 CCTTTCGCGGTTTTTATTGAATAGG 59.258 40.000 6.13 0.00 0.00 2.57
145 146 6.403855 CCTTTCGCGGTTTTTATTGAATAGGA 60.404 38.462 6.13 0.00 0.00 2.94
146 147 5.473796 TCGCGGTTTTTATTGAATAGGAC 57.526 39.130 6.13 0.00 0.00 3.85
147 148 4.936411 TCGCGGTTTTTATTGAATAGGACA 59.064 37.500 6.13 0.00 0.00 4.02
148 149 5.411977 TCGCGGTTTTTATTGAATAGGACAA 59.588 36.000 6.13 0.00 0.00 3.18
149 150 6.094325 TCGCGGTTTTTATTGAATAGGACAAT 59.906 34.615 6.13 0.00 40.40 2.71
150 151 6.750039 CGCGGTTTTTATTGAATAGGACAATT 59.250 34.615 0.00 0.00 38.61 2.32
151 152 7.044314 CGCGGTTTTTATTGAATAGGACAATTC 60.044 37.037 0.00 0.00 38.61 2.17
152 153 7.973944 GCGGTTTTTATTGAATAGGACAATTCT 59.026 33.333 0.00 0.00 38.61 2.40
218 219 2.428544 GTGTATATGCACCCAACCCA 57.571 50.000 12.50 0.00 33.53 4.51
219 220 2.729194 GTGTATATGCACCCAACCCAA 58.271 47.619 12.50 0.00 33.53 4.12
220 221 2.687935 GTGTATATGCACCCAACCCAAG 59.312 50.000 12.50 0.00 33.53 3.61
221 222 2.578480 TGTATATGCACCCAACCCAAGA 59.422 45.455 0.00 0.00 0.00 3.02
222 223 2.917713 ATATGCACCCAACCCAAGAA 57.082 45.000 0.00 0.00 0.00 2.52
223 224 1.917872 TATGCACCCAACCCAAGAAC 58.082 50.000 0.00 0.00 0.00 3.01
224 225 0.831711 ATGCACCCAACCCAAGAACC 60.832 55.000 0.00 0.00 0.00 3.62
225 226 1.456705 GCACCCAACCCAAGAACCA 60.457 57.895 0.00 0.00 0.00 3.67
226 227 1.045911 GCACCCAACCCAAGAACCAA 61.046 55.000 0.00 0.00 0.00 3.67
227 228 1.490574 CACCCAACCCAAGAACCAAA 58.509 50.000 0.00 0.00 0.00 3.28
228 229 1.138069 CACCCAACCCAAGAACCAAAC 59.862 52.381 0.00 0.00 0.00 2.93
229 230 0.387565 CCCAACCCAAGAACCAAACG 59.612 55.000 0.00 0.00 0.00 3.60
230 231 0.249280 CCAACCCAAGAACCAAACGC 60.249 55.000 0.00 0.00 0.00 4.84
231 232 0.457851 CAACCCAAGAACCAAACGCA 59.542 50.000 0.00 0.00 0.00 5.24
232 233 0.458260 AACCCAAGAACCAAACGCAC 59.542 50.000 0.00 0.00 0.00 5.34
233 234 1.008995 CCCAAGAACCAAACGCACG 60.009 57.895 0.00 0.00 0.00 5.34
234 235 1.720694 CCCAAGAACCAAACGCACGT 61.721 55.000 0.00 0.00 0.00 4.49
235 236 0.938713 CCAAGAACCAAACGCACGTA 59.061 50.000 0.00 0.00 0.00 3.57
236 237 1.533731 CCAAGAACCAAACGCACGTAT 59.466 47.619 0.00 0.00 0.00 3.06
237 238 2.031508 CCAAGAACCAAACGCACGTATT 60.032 45.455 0.00 0.00 0.00 1.89
238 239 3.223157 CAAGAACCAAACGCACGTATTC 58.777 45.455 0.00 0.00 0.00 1.75
239 240 1.802365 AGAACCAAACGCACGTATTCC 59.198 47.619 0.00 0.00 0.00 3.01
240 241 0.876399 AACCAAACGCACGTATTCCC 59.124 50.000 0.00 0.00 0.00 3.97
241 242 0.956902 ACCAAACGCACGTATTCCCC 60.957 55.000 0.00 0.00 0.00 4.81
242 243 0.956410 CCAAACGCACGTATTCCCCA 60.956 55.000 0.00 0.00 0.00 4.96
243 244 0.167251 CAAACGCACGTATTCCCCAC 59.833 55.000 0.00 0.00 0.00 4.61
244 245 0.250381 AAACGCACGTATTCCCCACA 60.250 50.000 0.00 0.00 0.00 4.17
245 246 0.952010 AACGCACGTATTCCCCACAC 60.952 55.000 0.00 0.00 0.00 3.82
246 247 1.374885 CGCACGTATTCCCCACACA 60.375 57.895 0.00 0.00 0.00 3.72
247 248 0.951525 CGCACGTATTCCCCACACAA 60.952 55.000 0.00 0.00 0.00 3.33
248 249 1.459450 GCACGTATTCCCCACACAAT 58.541 50.000 0.00 0.00 0.00 2.71
249 250 1.816224 GCACGTATTCCCCACACAATT 59.184 47.619 0.00 0.00 0.00 2.32
250 251 2.159435 GCACGTATTCCCCACACAATTC 60.159 50.000 0.00 0.00 0.00 2.17
251 252 3.078097 CACGTATTCCCCACACAATTCA 58.922 45.455 0.00 0.00 0.00 2.57
252 253 3.126858 CACGTATTCCCCACACAATTCAG 59.873 47.826 0.00 0.00 0.00 3.02
253 254 3.244770 ACGTATTCCCCACACAATTCAGT 60.245 43.478 0.00 0.00 0.00 3.41
254 255 4.020039 ACGTATTCCCCACACAATTCAGTA 60.020 41.667 0.00 0.00 0.00 2.74
255 256 4.938832 CGTATTCCCCACACAATTCAGTAA 59.061 41.667 0.00 0.00 0.00 2.24
256 257 5.588648 CGTATTCCCCACACAATTCAGTAAT 59.411 40.000 0.00 0.00 0.00 1.89
257 258 6.094881 CGTATTCCCCACACAATTCAGTAATT 59.905 38.462 0.00 0.00 35.65 1.40
258 259 7.281324 CGTATTCCCCACACAATTCAGTAATTA 59.719 37.037 0.00 0.00 33.45 1.40
259 260 7.645058 ATTCCCCACACAATTCAGTAATTAG 57.355 36.000 0.00 0.00 33.45 1.73
260 261 6.134535 TCCCCACACAATTCAGTAATTAGT 57.865 37.500 0.00 0.00 33.45 2.24
261 262 7.260387 TCCCCACACAATTCAGTAATTAGTA 57.740 36.000 0.00 0.00 33.45 1.82
262 263 7.335627 TCCCCACACAATTCAGTAATTAGTAG 58.664 38.462 0.00 0.00 33.45 2.57
263 264 7.181305 TCCCCACACAATTCAGTAATTAGTAGA 59.819 37.037 0.00 0.00 33.45 2.59
264 265 7.827236 CCCCACACAATTCAGTAATTAGTAGAA 59.173 37.037 0.00 0.96 33.45 2.10
265 266 9.226606 CCCACACAATTCAGTAATTAGTAGAAA 57.773 33.333 8.36 0.00 33.45 2.52
284 285 9.297037 AGTAGAAACACCTTTAAAATGCATACT 57.703 29.630 0.00 0.00 0.00 2.12
287 288 9.297037 AGAAACACCTTTAAAATGCATACTACT 57.703 29.630 0.00 0.00 0.00 2.57
288 289 9.556030 GAAACACCTTTAAAATGCATACTACTC 57.444 33.333 0.00 0.00 0.00 2.59
289 290 7.625828 ACACCTTTAAAATGCATACTACTCC 57.374 36.000 0.00 0.00 0.00 3.85
290 291 6.602009 ACACCTTTAAAATGCATACTACTCCC 59.398 38.462 0.00 0.00 0.00 4.30
291 292 6.828785 CACCTTTAAAATGCATACTACTCCCT 59.171 38.462 0.00 0.00 0.00 4.20
292 293 7.012421 CACCTTTAAAATGCATACTACTCCCTC 59.988 40.741 0.00 0.00 0.00 4.30
293 294 6.486993 CCTTTAAAATGCATACTACTCCCTCC 59.513 42.308 0.00 0.00 0.00 4.30
294 295 6.824958 TTAAAATGCATACTACTCCCTCCT 57.175 37.500 0.00 0.00 0.00 3.69
295 296 5.717119 AAAATGCATACTACTCCCTCCTT 57.283 39.130 0.00 0.00 0.00 3.36
296 297 5.717119 AAATGCATACTACTCCCTCCTTT 57.283 39.130 0.00 0.00 0.00 3.11
297 298 4.965200 ATGCATACTACTCCCTCCTTTC 57.035 45.455 0.00 0.00 0.00 2.62
298 299 3.039011 TGCATACTACTCCCTCCTTTCC 58.961 50.000 0.00 0.00 0.00 3.13
299 300 3.310193 GCATACTACTCCCTCCTTTCCT 58.690 50.000 0.00 0.00 0.00 3.36
300 301 4.078805 TGCATACTACTCCCTCCTTTCCTA 60.079 45.833 0.00 0.00 0.00 2.94
301 302 4.900054 GCATACTACTCCCTCCTTTCCTAA 59.100 45.833 0.00 0.00 0.00 2.69
302 303 5.365895 GCATACTACTCCCTCCTTTCCTAAA 59.634 44.000 0.00 0.00 0.00 1.85
303 304 6.043358 GCATACTACTCCCTCCTTTCCTAAAT 59.957 42.308 0.00 0.00 0.00 1.40
304 305 7.234988 GCATACTACTCCCTCCTTTCCTAAATA 59.765 40.741 0.00 0.00 0.00 1.40
305 306 9.327731 CATACTACTCCCTCCTTTCCTAAATAT 57.672 37.037 0.00 0.00 0.00 1.28
306 307 9.915564 ATACTACTCCCTCCTTTCCTAAATATT 57.084 33.333 0.00 0.00 0.00 1.28
307 308 8.640033 ACTACTCCCTCCTTTCCTAAATATTT 57.360 34.615 5.89 5.89 0.00 1.40
308 309 8.495260 ACTACTCCCTCCTTTCCTAAATATTTG 58.505 37.037 11.05 1.40 0.00 2.32
309 310 7.285340 ACTCCCTCCTTTCCTAAATATTTGT 57.715 36.000 11.05 0.00 0.00 2.83
310 311 7.347252 ACTCCCTCCTTTCCTAAATATTTGTC 58.653 38.462 11.05 0.00 0.00 3.18
311 312 7.184753 ACTCCCTCCTTTCCTAAATATTTGTCT 59.815 37.037 11.05 0.00 0.00 3.41
312 313 7.939781 TCCCTCCTTTCCTAAATATTTGTCTT 58.060 34.615 11.05 0.00 0.00 3.01
313 314 8.398743 TCCCTCCTTTCCTAAATATTTGTCTTT 58.601 33.333 11.05 0.00 0.00 2.52
314 315 8.687242 CCCTCCTTTCCTAAATATTTGTCTTTC 58.313 37.037 11.05 0.00 0.00 2.62
315 316 9.467796 CCTCCTTTCCTAAATATTTGTCTTTCT 57.532 33.333 11.05 0.00 0.00 2.52
331 332 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
332 333 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
333 334 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
334 335 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
335 336 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
336 337 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
337 338 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
338 339 7.603651 TCTAGAGATTTCAACAAGTGACTACC 58.396 38.462 0.00 0.00 35.39 3.18
339 340 6.174720 AGAGATTTCAACAAGTGACTACCA 57.825 37.500 0.00 0.00 35.39 3.25
340 341 5.992217 AGAGATTTCAACAAGTGACTACCAC 59.008 40.000 0.00 0.00 46.03 4.16
351 352 4.529897 AGTGACTACCACATACGGATGTA 58.470 43.478 14.23 0.00 44.82 2.29
352 353 5.138276 AGTGACTACCACATACGGATGTAT 58.862 41.667 14.23 7.46 44.82 2.29
353 354 6.301486 AGTGACTACCACATACGGATGTATA 58.699 40.000 14.23 8.27 44.82 1.47
354 355 6.946583 AGTGACTACCACATACGGATGTATAT 59.053 38.462 14.23 4.37 44.82 0.86
355 356 8.105197 AGTGACTACCACATACGGATGTATATA 58.895 37.037 14.23 5.36 44.82 0.86
356 357 8.396390 GTGACTACCACATACGGATGTATATAG 58.604 40.741 14.23 16.35 44.82 1.31
357 358 8.323567 TGACTACCACATACGGATGTATATAGA 58.676 37.037 22.62 7.05 44.82 1.98
358 359 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
359 360 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
360 361 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
362 363 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
389 390 9.638239 TTTAAGGTATTGATTCACTCATTTTGC 57.362 29.630 0.00 0.00 32.72 3.68
390 391 7.472334 AAGGTATTGATTCACTCATTTTGCT 57.528 32.000 0.00 0.00 32.72 3.91
391 392 7.093322 AGGTATTGATTCACTCATTTTGCTC 57.907 36.000 0.00 0.00 32.72 4.26
392 393 6.888632 AGGTATTGATTCACTCATTTTGCTCT 59.111 34.615 0.00 0.00 32.72 4.09
393 394 6.971184 GGTATTGATTCACTCATTTTGCTCTG 59.029 38.462 0.00 0.00 32.72 3.35
394 395 6.585695 ATTGATTCACTCATTTTGCTCTGT 57.414 33.333 0.00 0.00 32.72 3.41
395 396 5.366829 TGATTCACTCATTTTGCTCTGTG 57.633 39.130 0.00 0.00 0.00 3.66
396 397 4.823442 TGATTCACTCATTTTGCTCTGTGT 59.177 37.500 0.00 0.00 0.00 3.72
397 398 4.556942 TTCACTCATTTTGCTCTGTGTG 57.443 40.909 0.00 0.00 37.91 3.82
398 399 3.544684 TCACTCATTTTGCTCTGTGTGT 58.455 40.909 0.00 0.00 37.83 3.72
399 400 3.313249 TCACTCATTTTGCTCTGTGTGTG 59.687 43.478 0.00 0.00 37.83 3.82
400 401 2.620115 ACTCATTTTGCTCTGTGTGTGG 59.380 45.455 0.00 0.00 0.00 4.17
401 402 2.620115 CTCATTTTGCTCTGTGTGTGGT 59.380 45.455 0.00 0.00 0.00 4.16
402 403 2.618241 TCATTTTGCTCTGTGTGTGGTC 59.382 45.455 0.00 0.00 0.00 4.02
403 404 2.121291 TTTTGCTCTGTGTGTGGTCA 57.879 45.000 0.00 0.00 0.00 4.02
404 405 1.378531 TTTGCTCTGTGTGTGGTCAC 58.621 50.000 0.00 0.00 44.08 3.67
418 419 6.560253 GTGTGGTCACATGTTAAAATCTCT 57.440 37.500 7.08 0.00 43.97 3.10
419 420 7.667043 GTGTGGTCACATGTTAAAATCTCTA 57.333 36.000 7.08 0.00 43.97 2.43
420 421 7.743104 GTGTGGTCACATGTTAAAATCTCTAG 58.257 38.462 7.08 0.00 43.97 2.43
421 422 7.602644 GTGTGGTCACATGTTAAAATCTCTAGA 59.397 37.037 7.08 0.00 43.97 2.43
422 423 8.154203 TGTGGTCACATGTTAAAATCTCTAGAA 58.846 33.333 0.00 0.00 36.21 2.10
423 424 8.999431 GTGGTCACATGTTAAAATCTCTAGAAA 58.001 33.333 0.00 0.00 0.00 2.52
424 425 9.567776 TGGTCACATGTTAAAATCTCTAGAAAA 57.432 29.630 0.00 0.00 0.00 2.29
452 453 8.589338 TCTATATTCAGAAATGAAGGGAGTAGC 58.411 37.037 0.00 0.00 0.00 3.58
453 454 4.908601 TTCAGAAATGAAGGGAGTAGCA 57.091 40.909 0.00 0.00 0.00 3.49
454 455 5.441718 TTCAGAAATGAAGGGAGTAGCAT 57.558 39.130 0.00 0.00 0.00 3.79
455 456 6.560003 TTCAGAAATGAAGGGAGTAGCATA 57.440 37.500 0.00 0.00 0.00 3.14
456 457 6.753913 TCAGAAATGAAGGGAGTAGCATAT 57.246 37.500 0.00 0.00 0.00 1.78
457 458 7.855784 TCAGAAATGAAGGGAGTAGCATATA 57.144 36.000 0.00 0.00 0.00 0.86
458 459 7.671302 TCAGAAATGAAGGGAGTAGCATATAC 58.329 38.462 0.00 0.00 0.00 1.47
459 460 6.876257 CAGAAATGAAGGGAGTAGCATATACC 59.124 42.308 0.00 0.00 0.00 2.73
460 461 6.789959 AGAAATGAAGGGAGTAGCATATACCT 59.210 38.462 0.00 0.00 0.00 3.08
461 462 6.365970 AATGAAGGGAGTAGCATATACCTG 57.634 41.667 0.00 0.00 0.00 4.00
462 463 3.578716 TGAAGGGAGTAGCATATACCTGC 59.421 47.826 0.00 0.00 42.62 4.85
463 464 3.260269 AGGGAGTAGCATATACCTGCA 57.740 47.619 1.38 0.00 44.77 4.41
464 465 3.587498 AGGGAGTAGCATATACCTGCAA 58.413 45.455 1.38 0.00 44.77 4.08
465 466 4.171234 AGGGAGTAGCATATACCTGCAAT 58.829 43.478 1.38 0.00 44.77 3.56
466 467 4.019860 AGGGAGTAGCATATACCTGCAATG 60.020 45.833 1.38 0.00 44.77 2.82
467 468 4.256920 GGAGTAGCATATACCTGCAATGG 58.743 47.826 1.38 0.00 44.77 3.16
468 469 4.263068 GGAGTAGCATATACCTGCAATGGT 60.263 45.833 2.83 2.83 44.77 3.55
469 470 5.308825 GAGTAGCATATACCTGCAATGGTT 58.691 41.667 2.55 0.00 44.77 3.67
470 471 5.694995 AGTAGCATATACCTGCAATGGTTT 58.305 37.500 2.55 0.00 44.77 3.27
471 472 6.129179 AGTAGCATATACCTGCAATGGTTTT 58.871 36.000 2.55 0.00 44.77 2.43
472 473 5.266733 AGCATATACCTGCAATGGTTTTG 57.733 39.130 2.55 1.08 44.77 2.44
473 474 4.099881 AGCATATACCTGCAATGGTTTTGG 59.900 41.667 2.55 0.00 44.77 3.28
474 475 4.370917 CATATACCTGCAATGGTTTTGGC 58.629 43.478 2.55 0.00 41.22 4.52
475 476 2.008242 TACCTGCAATGGTTTTGGCT 57.992 45.000 2.55 0.00 41.22 4.75
476 477 0.393820 ACCTGCAATGGTTTTGGCTG 59.606 50.000 0.00 0.00 36.89 4.85
477 478 0.320946 CCTGCAATGGTTTTGGCTGG 60.321 55.000 0.00 0.00 38.67 4.85
478 479 0.393820 CTGCAATGGTTTTGGCTGGT 59.606 50.000 0.00 0.00 0.00 4.00
479 480 1.617850 CTGCAATGGTTTTGGCTGGTA 59.382 47.619 0.00 0.00 0.00 3.25
480 481 1.617850 TGCAATGGTTTTGGCTGGTAG 59.382 47.619 0.00 0.00 0.00 3.18
481 482 1.618343 GCAATGGTTTTGGCTGGTAGT 59.382 47.619 0.00 0.00 0.00 2.73
482 483 2.352715 GCAATGGTTTTGGCTGGTAGTC 60.353 50.000 0.00 0.00 0.00 2.59
483 484 1.821216 ATGGTTTTGGCTGGTAGTCG 58.179 50.000 0.00 0.00 0.00 4.18
484 485 0.759959 TGGTTTTGGCTGGTAGTCGA 59.240 50.000 0.00 0.00 0.00 4.20
485 486 1.270625 TGGTTTTGGCTGGTAGTCGAG 60.271 52.381 0.00 0.00 0.00 4.04
486 487 1.439679 GTTTTGGCTGGTAGTCGAGG 58.560 55.000 0.00 0.00 0.00 4.63
487 488 1.001633 GTTTTGGCTGGTAGTCGAGGA 59.998 52.381 0.00 0.00 0.00 3.71
488 489 1.344065 TTTGGCTGGTAGTCGAGGAA 58.656 50.000 0.00 0.00 0.00 3.36
489 490 1.344065 TTGGCTGGTAGTCGAGGAAA 58.656 50.000 0.00 0.00 0.00 3.13
490 491 1.568504 TGGCTGGTAGTCGAGGAAAT 58.431 50.000 0.00 0.00 0.00 2.17
491 492 2.742348 TGGCTGGTAGTCGAGGAAATA 58.258 47.619 0.00 0.00 0.00 1.40
492 493 2.693591 TGGCTGGTAGTCGAGGAAATAG 59.306 50.000 0.00 0.00 0.00 1.73
493 494 2.694109 GGCTGGTAGTCGAGGAAATAGT 59.306 50.000 0.00 0.00 0.00 2.12
494 495 3.491104 GGCTGGTAGTCGAGGAAATAGTG 60.491 52.174 0.00 0.00 0.00 2.74
495 496 3.491104 GCTGGTAGTCGAGGAAATAGTGG 60.491 52.174 0.00 0.00 0.00 4.00
496 497 2.429610 TGGTAGTCGAGGAAATAGTGGC 59.570 50.000 0.00 0.00 0.00 5.01
497 498 2.223994 GGTAGTCGAGGAAATAGTGGCC 60.224 54.545 0.00 0.00 0.00 5.36
498 499 0.831307 AGTCGAGGAAATAGTGGCCC 59.169 55.000 0.00 0.00 0.00 5.80
499 500 0.179054 GTCGAGGAAATAGTGGCCCC 60.179 60.000 0.00 0.00 0.00 5.80
500 501 0.619255 TCGAGGAAATAGTGGCCCCA 60.619 55.000 0.00 0.00 0.00 4.96
501 502 0.463833 CGAGGAAATAGTGGCCCCAC 60.464 60.000 9.42 9.42 46.50 4.61
509 510 4.767255 GTGGCCCCACAGCGAGAG 62.767 72.222 12.42 0.00 45.53 3.20
522 523 2.670635 CGAGAGCGAGGTTTGATGG 58.329 57.895 0.00 0.00 40.82 3.51
523 524 1.424493 CGAGAGCGAGGTTTGATGGC 61.424 60.000 0.00 0.00 40.82 4.40
524 525 1.078143 AGAGCGAGGTTTGATGGCC 60.078 57.895 0.00 0.00 0.00 5.36
525 526 2.436646 AGCGAGGTTTGATGGCCG 60.437 61.111 0.00 0.00 0.00 6.13
526 527 2.435938 GCGAGGTTTGATGGCCGA 60.436 61.111 0.00 0.00 0.00 5.54
527 528 2.750888 GCGAGGTTTGATGGCCGAC 61.751 63.158 0.00 0.00 0.00 4.79
528 529 1.375396 CGAGGTTTGATGGCCGACA 60.375 57.895 0.00 0.00 0.00 4.35
529 530 1.361668 CGAGGTTTGATGGCCGACAG 61.362 60.000 0.00 0.00 0.00 3.51
530 531 1.648467 GAGGTTTGATGGCCGACAGC 61.648 60.000 0.00 0.00 42.60 4.40
531 532 1.675641 GGTTTGATGGCCGACAGCT 60.676 57.895 0.00 0.00 43.05 4.24
532 533 1.244019 GGTTTGATGGCCGACAGCTT 61.244 55.000 0.00 0.00 43.05 3.74
533 534 0.169009 GTTTGATGGCCGACAGCTTC 59.831 55.000 0.00 0.00 43.05 3.86
534 535 0.036732 TTTGATGGCCGACAGCTTCT 59.963 50.000 0.00 0.00 43.05 2.85
535 536 0.391661 TTGATGGCCGACAGCTTCTC 60.392 55.000 0.00 0.00 43.05 2.87
536 537 1.219124 GATGGCCGACAGCTTCTCA 59.781 57.895 0.00 0.00 43.05 3.27
537 538 0.809241 GATGGCCGACAGCTTCTCAG 60.809 60.000 0.00 0.00 43.05 3.35
555 556 4.093952 CGGCAGCTGAAACGCAGG 62.094 66.667 20.43 0.00 45.03 4.85
556 557 2.669569 GGCAGCTGAAACGCAGGA 60.670 61.111 20.43 0.00 45.03 3.86
557 558 2.684843 GGCAGCTGAAACGCAGGAG 61.685 63.158 20.43 0.00 45.03 3.69
558 559 2.684843 GCAGCTGAAACGCAGGAGG 61.685 63.158 20.43 0.00 45.03 4.30
559 560 2.359230 AGCTGAAACGCAGGAGGC 60.359 61.111 0.00 0.00 45.03 4.70
560 561 3.435186 GCTGAAACGCAGGAGGCC 61.435 66.667 0.00 0.00 45.03 5.19
561 562 2.747855 CTGAAACGCAGGAGGCCC 60.748 66.667 0.00 0.00 41.07 5.80
562 563 3.249189 TGAAACGCAGGAGGCCCT 61.249 61.111 0.00 0.00 45.74 5.19
578 579 4.694233 CTGTGGCTGCGGACTGCT 62.694 66.667 7.96 0.00 46.63 4.24
579 580 4.687215 TGTGGCTGCGGACTGCTC 62.687 66.667 7.96 0.00 46.63 4.26
582 583 4.400961 GGCTGCGGACTGCTCCTT 62.401 66.667 7.96 0.00 46.63 3.36
583 584 3.123620 GCTGCGGACTGCTCCTTG 61.124 66.667 7.96 0.00 46.63 3.61
584 585 2.345244 CTGCGGACTGCTCCTTGT 59.655 61.111 7.96 0.00 46.63 3.16
585 586 1.302033 CTGCGGACTGCTCCTTGTT 60.302 57.895 7.96 0.00 46.63 2.83
586 587 0.886490 CTGCGGACTGCTCCTTGTTT 60.886 55.000 7.96 0.00 46.63 2.83
587 588 0.394938 TGCGGACTGCTCCTTGTTTA 59.605 50.000 7.96 0.00 46.63 2.01
588 589 1.202710 TGCGGACTGCTCCTTGTTTAA 60.203 47.619 7.96 0.00 46.63 1.52
589 590 1.197036 GCGGACTGCTCCTTGTTTAAC 59.803 52.381 0.00 0.00 41.73 2.01
590 591 2.489971 CGGACTGCTCCTTGTTTAACA 58.510 47.619 0.00 0.00 33.79 2.41
591 592 3.074412 CGGACTGCTCCTTGTTTAACAT 58.926 45.455 0.00 0.00 33.79 2.71
592 593 3.502211 CGGACTGCTCCTTGTTTAACATT 59.498 43.478 0.00 0.00 33.79 2.71
593 594 4.613622 CGGACTGCTCCTTGTTTAACATTG 60.614 45.833 0.00 0.00 33.79 2.82
594 595 4.518970 GGACTGCTCCTTGTTTAACATTGA 59.481 41.667 0.00 0.00 33.07 2.57
595 596 5.438761 ACTGCTCCTTGTTTAACATTGAC 57.561 39.130 0.00 0.00 0.00 3.18
596 597 4.887071 ACTGCTCCTTGTTTAACATTGACA 59.113 37.500 0.00 0.64 0.00 3.58
597 598 5.536161 ACTGCTCCTTGTTTAACATTGACAT 59.464 36.000 0.00 0.00 0.00 3.06
598 599 6.040842 ACTGCTCCTTGTTTAACATTGACATT 59.959 34.615 0.00 0.00 0.00 2.71
599 600 6.215121 TGCTCCTTGTTTAACATTGACATTG 58.785 36.000 0.00 0.00 0.00 2.82
600 601 5.119125 GCTCCTTGTTTAACATTGACATTGC 59.881 40.000 0.00 0.00 0.00 3.56
981 1002 0.529833 CTGCTTCTTCTCGCTCTCCA 59.470 55.000 0.00 0.00 0.00 3.86
1224 1246 8.685427 AGTTGATACATATATGTTTTTGCTGCA 58.315 29.630 22.90 0.00 41.97 4.41
1361 1383 0.247460 TGACACTGGCAGGAGATTCG 59.753 55.000 20.34 0.53 0.00 3.34
1384 1406 4.277672 GTCGGATGTGCTACTGAGGTAATA 59.722 45.833 0.00 0.00 0.00 0.98
3137 3197 6.127026 CCTTACCTTTAGTTCCATAGCTCTGT 60.127 42.308 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.877178 GTGAATAACTTGTATATAGCTGGCTAT 57.123 33.333 17.51 17.51 41.58 2.97
44 45 8.866093 TGTGAATAACTTGTATATAGCTGGCTA 58.134 33.333 4.72 4.72 0.00 3.93
45 46 7.657761 GTGTGAATAACTTGTATATAGCTGGCT 59.342 37.037 0.00 0.00 0.00 4.75
46 47 7.095187 GGTGTGAATAACTTGTATATAGCTGGC 60.095 40.741 0.00 0.00 0.00 4.85
47 48 8.150945 AGGTGTGAATAACTTGTATATAGCTGG 58.849 37.037 0.00 0.00 0.00 4.85
54 55 9.116067 GCCAAATAGGTGTGAATAACTTGTATA 57.884 33.333 0.00 0.00 40.61 1.47
55 56 7.068226 GGCCAAATAGGTGTGAATAACTTGTAT 59.932 37.037 0.00 0.00 40.61 2.29
56 57 6.376018 GGCCAAATAGGTGTGAATAACTTGTA 59.624 38.462 0.00 0.00 40.61 2.41
57 58 5.185056 GGCCAAATAGGTGTGAATAACTTGT 59.815 40.000 0.00 0.00 40.61 3.16
58 59 5.418840 AGGCCAAATAGGTGTGAATAACTTG 59.581 40.000 5.01 0.00 40.61 3.16
59 60 5.580022 AGGCCAAATAGGTGTGAATAACTT 58.420 37.500 5.01 0.00 40.61 2.66
60 61 5.193099 AGGCCAAATAGGTGTGAATAACT 57.807 39.130 5.01 0.00 40.61 2.24
61 62 5.914898 AAGGCCAAATAGGTGTGAATAAC 57.085 39.130 5.01 0.00 40.61 1.89
62 63 7.179269 ACTTAAGGCCAAATAGGTGTGAATAA 58.821 34.615 5.01 0.00 40.61 1.40
63 64 6.727394 ACTTAAGGCCAAATAGGTGTGAATA 58.273 36.000 5.01 0.00 40.61 1.75
64 65 5.580022 ACTTAAGGCCAAATAGGTGTGAAT 58.420 37.500 5.01 0.00 40.61 2.57
65 66 4.993028 ACTTAAGGCCAAATAGGTGTGAA 58.007 39.130 5.01 0.00 40.61 3.18
66 67 4.650972 ACTTAAGGCCAAATAGGTGTGA 57.349 40.909 5.01 0.00 40.61 3.58
67 68 5.722021 AAACTTAAGGCCAAATAGGTGTG 57.278 39.130 5.01 0.00 40.61 3.82
68 69 6.740944 AAAAACTTAAGGCCAAATAGGTGT 57.259 33.333 5.01 0.00 40.61 4.16
88 89 4.257731 GTGGCTTCAGGGAAAAACAAAAA 58.742 39.130 0.00 0.00 0.00 1.94
89 90 3.369997 GGTGGCTTCAGGGAAAAACAAAA 60.370 43.478 0.00 0.00 0.00 2.44
90 91 2.169561 GGTGGCTTCAGGGAAAAACAAA 59.830 45.455 0.00 0.00 0.00 2.83
91 92 1.760029 GGTGGCTTCAGGGAAAAACAA 59.240 47.619 0.00 0.00 0.00 2.83
92 93 1.408969 GGTGGCTTCAGGGAAAAACA 58.591 50.000 0.00 0.00 0.00 2.83
93 94 0.313987 CGGTGGCTTCAGGGAAAAAC 59.686 55.000 0.00 0.00 0.00 2.43
94 95 0.825840 CCGGTGGCTTCAGGGAAAAA 60.826 55.000 0.00 0.00 0.00 1.94
95 96 1.228429 CCGGTGGCTTCAGGGAAAA 60.228 57.895 0.00 0.00 0.00 2.29
96 97 2.434331 CCGGTGGCTTCAGGGAAA 59.566 61.111 0.00 0.00 0.00 3.13
97 98 3.646715 CCCGGTGGCTTCAGGGAA 61.647 66.667 0.00 0.00 43.79 3.97
100 101 2.994643 AAAACCCCGGTGGCTTCAGG 62.995 60.000 0.00 0.00 37.83 3.86
101 102 1.524008 GAAAACCCCGGTGGCTTCAG 61.524 60.000 0.00 0.00 37.83 3.02
102 103 1.529713 GAAAACCCCGGTGGCTTCA 60.530 57.895 0.00 0.00 37.83 3.02
103 104 2.273179 GGAAAACCCCGGTGGCTTC 61.273 63.158 0.00 8.07 37.83 3.86
104 105 2.203582 GGAAAACCCCGGTGGCTT 60.204 61.111 0.00 0.00 37.83 4.35
105 106 2.306715 AAAGGAAAACCCCGGTGGCT 62.307 55.000 0.00 0.00 37.83 4.75
106 107 1.812686 GAAAGGAAAACCCCGGTGGC 61.813 60.000 0.00 0.00 37.83 5.01
107 108 1.520600 CGAAAGGAAAACCCCGGTGG 61.521 60.000 0.00 3.72 41.37 4.61
108 109 1.953772 CGAAAGGAAAACCCCGGTG 59.046 57.895 0.00 0.00 34.66 4.94
109 110 1.900016 GCGAAAGGAAAACCCCGGT 60.900 57.895 0.00 0.00 34.66 5.28
110 111 2.959372 GCGAAAGGAAAACCCCGG 59.041 61.111 0.00 0.00 34.66 5.73
111 112 2.559330 CGCGAAAGGAAAACCCCG 59.441 61.111 0.00 0.00 34.66 5.73
112 113 1.457823 AACCGCGAAAGGAAAACCCC 61.458 55.000 8.23 0.00 34.66 4.95
113 114 0.386476 AAACCGCGAAAGGAAAACCC 59.614 50.000 8.23 0.00 34.73 4.11
114 115 2.212869 AAAACCGCGAAAGGAAAACC 57.787 45.000 8.23 0.00 34.73 3.27
115 116 5.459434 TCAATAAAAACCGCGAAAGGAAAAC 59.541 36.000 8.23 0.00 34.73 2.43
116 117 5.589192 TCAATAAAAACCGCGAAAGGAAAA 58.411 33.333 8.23 0.00 34.73 2.29
117 118 5.184340 TCAATAAAAACCGCGAAAGGAAA 57.816 34.783 8.23 0.00 34.73 3.13
118 119 4.832590 TCAATAAAAACCGCGAAAGGAA 57.167 36.364 8.23 0.00 34.73 3.36
119 120 4.832590 TTCAATAAAAACCGCGAAAGGA 57.167 36.364 8.23 0.00 34.73 3.36
120 121 5.741982 CCTATTCAATAAAAACCGCGAAAGG 59.258 40.000 8.23 0.00 37.30 3.11
121 122 6.468000 GTCCTATTCAATAAAAACCGCGAAAG 59.532 38.462 8.23 0.00 0.00 2.62
122 123 6.072618 TGTCCTATTCAATAAAAACCGCGAAA 60.073 34.615 8.23 0.00 0.00 3.46
123 124 5.411977 TGTCCTATTCAATAAAAACCGCGAA 59.588 36.000 8.23 0.00 0.00 4.70
124 125 4.936411 TGTCCTATTCAATAAAAACCGCGA 59.064 37.500 8.23 0.00 0.00 5.87
125 126 5.224562 TGTCCTATTCAATAAAAACCGCG 57.775 39.130 0.00 0.00 0.00 6.46
126 127 7.973944 AGAATTGTCCTATTCAATAAAAACCGC 59.026 33.333 4.69 0.00 37.06 5.68
199 200 2.428544 TGGGTTGGGTGCATATACAC 57.571 50.000 0.00 0.00 39.94 2.90
200 201 2.578480 TCTTGGGTTGGGTGCATATACA 59.422 45.455 0.00 0.00 0.00 2.29
201 202 3.290948 TCTTGGGTTGGGTGCATATAC 57.709 47.619 0.00 0.00 0.00 1.47
202 203 3.626222 GGTTCTTGGGTTGGGTGCATATA 60.626 47.826 0.00 0.00 0.00 0.86
203 204 2.456577 GTTCTTGGGTTGGGTGCATAT 58.543 47.619 0.00 0.00 0.00 1.78
204 205 1.549037 GGTTCTTGGGTTGGGTGCATA 60.549 52.381 0.00 0.00 0.00 3.14
205 206 0.831711 GGTTCTTGGGTTGGGTGCAT 60.832 55.000 0.00 0.00 0.00 3.96
206 207 1.456705 GGTTCTTGGGTTGGGTGCA 60.457 57.895 0.00 0.00 0.00 4.57
207 208 1.045911 TTGGTTCTTGGGTTGGGTGC 61.046 55.000 0.00 0.00 0.00 5.01
208 209 1.138069 GTTTGGTTCTTGGGTTGGGTG 59.862 52.381 0.00 0.00 0.00 4.61
209 210 1.491668 GTTTGGTTCTTGGGTTGGGT 58.508 50.000 0.00 0.00 0.00 4.51
210 211 0.387565 CGTTTGGTTCTTGGGTTGGG 59.612 55.000 0.00 0.00 0.00 4.12
211 212 0.249280 GCGTTTGGTTCTTGGGTTGG 60.249 55.000 0.00 0.00 0.00 3.77
212 213 0.457851 TGCGTTTGGTTCTTGGGTTG 59.542 50.000 0.00 0.00 0.00 3.77
213 214 0.458260 GTGCGTTTGGTTCTTGGGTT 59.542 50.000 0.00 0.00 0.00 4.11
214 215 1.720694 CGTGCGTTTGGTTCTTGGGT 61.721 55.000 0.00 0.00 0.00 4.51
215 216 1.008995 CGTGCGTTTGGTTCTTGGG 60.009 57.895 0.00 0.00 0.00 4.12
216 217 0.938713 TACGTGCGTTTGGTTCTTGG 59.061 50.000 1.66 0.00 0.00 3.61
217 218 2.961522 ATACGTGCGTTTGGTTCTTG 57.038 45.000 1.66 0.00 0.00 3.02
218 219 2.224784 GGAATACGTGCGTTTGGTTCTT 59.775 45.455 1.66 0.00 0.00 2.52
219 220 1.802365 GGAATACGTGCGTTTGGTTCT 59.198 47.619 1.66 0.00 0.00 3.01
220 221 1.135888 GGGAATACGTGCGTTTGGTTC 60.136 52.381 1.66 3.53 0.00 3.62
221 222 0.876399 GGGAATACGTGCGTTTGGTT 59.124 50.000 1.66 0.00 0.00 3.67
222 223 0.956902 GGGGAATACGTGCGTTTGGT 60.957 55.000 1.66 0.00 0.00 3.67
223 224 0.956410 TGGGGAATACGTGCGTTTGG 60.956 55.000 1.66 0.00 0.00 3.28
224 225 0.167251 GTGGGGAATACGTGCGTTTG 59.833 55.000 1.66 0.00 0.00 2.93
225 226 0.250381 TGTGGGGAATACGTGCGTTT 60.250 50.000 1.66 0.00 0.00 3.60
226 227 0.952010 GTGTGGGGAATACGTGCGTT 60.952 55.000 1.66 0.00 0.00 4.84
227 228 1.375013 GTGTGGGGAATACGTGCGT 60.375 57.895 0.00 2.05 0.00 5.24
228 229 0.951525 TTGTGTGGGGAATACGTGCG 60.952 55.000 0.00 0.00 0.00 5.34
229 230 1.459450 ATTGTGTGGGGAATACGTGC 58.541 50.000 0.00 0.00 0.00 5.34
230 231 3.078097 TGAATTGTGTGGGGAATACGTG 58.922 45.455 0.00 0.00 0.00 4.49
231 232 3.244770 ACTGAATTGTGTGGGGAATACGT 60.245 43.478 0.00 0.00 0.00 3.57
232 233 3.343617 ACTGAATTGTGTGGGGAATACG 58.656 45.455 0.00 0.00 0.00 3.06
233 234 7.404671 AATTACTGAATTGTGTGGGGAATAC 57.595 36.000 0.00 0.00 33.86 1.89
234 235 8.333235 ACTAATTACTGAATTGTGTGGGGAATA 58.667 33.333 0.00 0.00 35.96 1.75
235 236 7.182060 ACTAATTACTGAATTGTGTGGGGAAT 58.818 34.615 0.00 0.00 35.96 3.01
236 237 6.548321 ACTAATTACTGAATTGTGTGGGGAA 58.452 36.000 0.00 0.00 35.96 3.97
237 238 6.134535 ACTAATTACTGAATTGTGTGGGGA 57.865 37.500 0.00 0.00 35.96 4.81
238 239 7.335627 TCTACTAATTACTGAATTGTGTGGGG 58.664 38.462 0.00 0.00 35.96 4.96
239 240 8.786826 TTCTACTAATTACTGAATTGTGTGGG 57.213 34.615 0.00 0.00 35.96 4.61
258 259 9.297037 AGTATGCATTTTAAAGGTGTTTCTACT 57.703 29.630 3.54 0.00 0.00 2.57
261 262 9.297037 AGTAGTATGCATTTTAAAGGTGTTTCT 57.703 29.630 3.54 0.00 0.00 2.52
262 263 9.556030 GAGTAGTATGCATTTTAAAGGTGTTTC 57.444 33.333 3.54 0.00 0.00 2.78
263 264 8.520351 GGAGTAGTATGCATTTTAAAGGTGTTT 58.480 33.333 3.54 0.00 0.00 2.83
264 265 7.122204 GGGAGTAGTATGCATTTTAAAGGTGTT 59.878 37.037 3.54 0.00 0.00 3.32
265 266 6.602009 GGGAGTAGTATGCATTTTAAAGGTGT 59.398 38.462 3.54 0.00 0.00 4.16
266 267 6.828785 AGGGAGTAGTATGCATTTTAAAGGTG 59.171 38.462 3.54 0.00 0.00 4.00
267 268 6.970191 AGGGAGTAGTATGCATTTTAAAGGT 58.030 36.000 3.54 0.00 0.00 3.50
268 269 6.486993 GGAGGGAGTAGTATGCATTTTAAAGG 59.513 42.308 3.54 0.00 0.00 3.11
269 270 7.283329 AGGAGGGAGTAGTATGCATTTTAAAG 58.717 38.462 3.54 0.00 0.00 1.85
270 271 7.208064 AGGAGGGAGTAGTATGCATTTTAAA 57.792 36.000 3.54 0.00 0.00 1.52
271 272 6.824958 AGGAGGGAGTAGTATGCATTTTAA 57.175 37.500 3.54 0.00 0.00 1.52
272 273 6.824958 AAGGAGGGAGTAGTATGCATTTTA 57.175 37.500 3.54 0.00 0.00 1.52
273 274 5.717119 AAGGAGGGAGTAGTATGCATTTT 57.283 39.130 3.54 0.00 0.00 1.82
274 275 5.398012 GGAAAGGAGGGAGTAGTATGCATTT 60.398 44.000 3.54 0.00 0.00 2.32
275 276 4.103311 GGAAAGGAGGGAGTAGTATGCATT 59.897 45.833 3.54 0.00 0.00 3.56
276 277 3.648545 GGAAAGGAGGGAGTAGTATGCAT 59.351 47.826 3.79 3.79 0.00 3.96
277 278 3.039011 GGAAAGGAGGGAGTAGTATGCA 58.961 50.000 0.00 0.00 0.00 3.96
278 279 3.310193 AGGAAAGGAGGGAGTAGTATGC 58.690 50.000 0.00 0.00 0.00 3.14
279 280 7.619512 ATTTAGGAAAGGAGGGAGTAGTATG 57.380 40.000 0.00 0.00 0.00 2.39
280 281 9.915564 AATATTTAGGAAAGGAGGGAGTAGTAT 57.084 33.333 0.00 0.00 0.00 2.12
281 282 9.739737 AAATATTTAGGAAAGGAGGGAGTAGTA 57.260 33.333 0.00 0.00 0.00 1.82
282 283 8.495260 CAAATATTTAGGAAAGGAGGGAGTAGT 58.505 37.037 0.00 0.00 0.00 2.73
283 284 8.495260 ACAAATATTTAGGAAAGGAGGGAGTAG 58.505 37.037 0.00 0.00 0.00 2.57
284 285 8.401955 ACAAATATTTAGGAAAGGAGGGAGTA 57.598 34.615 0.00 0.00 0.00 2.59
285 286 7.184753 AGACAAATATTTAGGAAAGGAGGGAGT 59.815 37.037 0.00 0.00 0.00 3.85
286 287 7.578203 AGACAAATATTTAGGAAAGGAGGGAG 58.422 38.462 0.00 0.00 0.00 4.30
287 288 7.525158 AGACAAATATTTAGGAAAGGAGGGA 57.475 36.000 0.00 0.00 0.00 4.20
288 289 8.595362 AAAGACAAATATTTAGGAAAGGAGGG 57.405 34.615 0.00 0.00 0.00 4.30
289 290 9.467796 AGAAAGACAAATATTTAGGAAAGGAGG 57.532 33.333 0.00 0.00 0.00 4.30
305 306 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
306 307 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
307 308 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
308 309 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
309 310 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
310 311 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
311 312 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
312 313 8.088981 GGTAGTCACTTGTTGAAATCTCTAGAA 58.911 37.037 0.00 0.00 35.39 2.10
313 314 7.232737 TGGTAGTCACTTGTTGAAATCTCTAGA 59.767 37.037 0.00 0.00 35.39 2.43
314 315 7.329717 GTGGTAGTCACTTGTTGAAATCTCTAG 59.670 40.741 0.00 0.00 42.86 2.43
315 316 7.152645 GTGGTAGTCACTTGTTGAAATCTCTA 58.847 38.462 0.00 0.00 42.86 2.43
316 317 5.992217 GTGGTAGTCACTTGTTGAAATCTCT 59.008 40.000 0.00 0.00 42.86 3.10
317 318 5.758296 TGTGGTAGTCACTTGTTGAAATCTC 59.242 40.000 0.00 0.00 46.20 2.75
318 319 5.680619 TGTGGTAGTCACTTGTTGAAATCT 58.319 37.500 0.00 0.00 46.20 2.40
319 320 6.560253 ATGTGGTAGTCACTTGTTGAAATC 57.440 37.500 0.00 0.00 46.20 2.17
320 321 6.147164 CGTATGTGGTAGTCACTTGTTGAAAT 59.853 38.462 0.00 0.00 46.20 2.17
321 322 5.464057 CGTATGTGGTAGTCACTTGTTGAAA 59.536 40.000 0.00 0.00 46.20 2.69
322 323 4.986034 CGTATGTGGTAGTCACTTGTTGAA 59.014 41.667 0.00 0.00 46.20 2.69
323 324 4.552355 CGTATGTGGTAGTCACTTGTTGA 58.448 43.478 0.00 0.00 46.20 3.18
324 325 3.678072 CCGTATGTGGTAGTCACTTGTTG 59.322 47.826 0.00 0.00 46.20 3.33
325 326 3.575256 TCCGTATGTGGTAGTCACTTGTT 59.425 43.478 0.00 0.00 46.20 2.83
326 327 3.159472 TCCGTATGTGGTAGTCACTTGT 58.841 45.455 0.00 0.00 46.20 3.16
327 328 3.861276 TCCGTATGTGGTAGTCACTTG 57.139 47.619 0.00 0.00 46.20 3.16
328 329 3.767673 ACATCCGTATGTGGTAGTCACTT 59.232 43.478 0.00 0.00 44.79 3.16
329 330 3.362706 ACATCCGTATGTGGTAGTCACT 58.637 45.455 0.00 0.00 44.79 3.41
330 331 3.795623 ACATCCGTATGTGGTAGTCAC 57.204 47.619 0.00 0.00 44.79 3.67
331 332 8.323567 TCTATATACATCCGTATGTGGTAGTCA 58.676 37.037 3.56 0.00 45.99 3.41
332 333 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
333 334 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
334 335 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
336 337 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
363 364 9.638239 GCAAAATGAGTGAATCAATACCTTAAA 57.362 29.630 0.00 0.00 42.53 1.52
364 365 9.023962 AGCAAAATGAGTGAATCAATACCTTAA 57.976 29.630 0.00 0.00 42.53 1.85
365 366 8.579850 AGCAAAATGAGTGAATCAATACCTTA 57.420 30.769 0.00 0.00 42.53 2.69
366 367 7.395489 AGAGCAAAATGAGTGAATCAATACCTT 59.605 33.333 0.00 0.00 42.53 3.50
367 368 6.888632 AGAGCAAAATGAGTGAATCAATACCT 59.111 34.615 0.00 0.00 42.53 3.08
368 369 6.971184 CAGAGCAAAATGAGTGAATCAATACC 59.029 38.462 0.00 0.00 42.53 2.73
369 370 7.484007 CACAGAGCAAAATGAGTGAATCAATAC 59.516 37.037 0.00 0.00 42.53 1.89
370 371 7.175467 ACACAGAGCAAAATGAGTGAATCAATA 59.825 33.333 0.00 0.00 42.53 1.90
371 372 6.015688 ACACAGAGCAAAATGAGTGAATCAAT 60.016 34.615 0.00 0.00 42.53 2.57
372 373 5.300034 ACACAGAGCAAAATGAGTGAATCAA 59.700 36.000 0.00 0.00 42.53 2.57
373 374 4.823442 ACACAGAGCAAAATGAGTGAATCA 59.177 37.500 0.00 0.00 43.70 2.57
374 375 5.152097 CACACAGAGCAAAATGAGTGAATC 58.848 41.667 0.00 0.00 39.46 2.52
375 376 4.581824 ACACACAGAGCAAAATGAGTGAAT 59.418 37.500 9.23 0.00 39.46 2.57
376 377 3.947196 ACACACAGAGCAAAATGAGTGAA 59.053 39.130 9.23 0.00 39.46 3.18
377 378 3.313249 CACACACAGAGCAAAATGAGTGA 59.687 43.478 9.23 0.00 39.46 3.41
378 379 3.549423 CCACACACAGAGCAAAATGAGTG 60.549 47.826 1.98 1.98 41.79 3.51
379 380 2.620115 CCACACACAGAGCAAAATGAGT 59.380 45.455 0.00 0.00 0.00 3.41
380 381 2.620115 ACCACACACAGAGCAAAATGAG 59.380 45.455 0.00 0.00 0.00 2.90
381 382 2.618241 GACCACACACAGAGCAAAATGA 59.382 45.455 0.00 0.00 0.00 2.57
382 383 2.358582 TGACCACACACAGAGCAAAATG 59.641 45.455 0.00 0.00 0.00 2.32
383 384 2.358898 GTGACCACACACAGAGCAAAAT 59.641 45.455 0.00 0.00 45.32 1.82
384 385 1.742831 GTGACCACACACAGAGCAAAA 59.257 47.619 0.00 0.00 45.32 2.44
385 386 1.378531 GTGACCACACACAGAGCAAA 58.621 50.000 0.00 0.00 45.32 3.68
386 387 3.079131 GTGACCACACACAGAGCAA 57.921 52.632 0.00 0.00 45.32 3.91
387 388 4.855105 GTGACCACACACAGAGCA 57.145 55.556 0.00 0.00 45.32 4.26
395 396 6.560253 AGAGATTTTAACATGTGACCACAC 57.440 37.500 0.00 0.00 45.05 3.82
396 397 7.676004 TCTAGAGATTTTAACATGTGACCACA 58.324 34.615 0.00 5.22 46.44 4.17
397 398 8.547967 TTCTAGAGATTTTAACATGTGACCAC 57.452 34.615 0.00 0.00 0.00 4.16
398 399 9.567776 TTTTCTAGAGATTTTAACATGTGACCA 57.432 29.630 0.00 0.00 0.00 4.02
426 427 8.589338 GCTACTCCCTTCATTTCTGAATATAGA 58.411 37.037 0.00 0.00 40.52 1.98
427 428 8.370940 TGCTACTCCCTTCATTTCTGAATATAG 58.629 37.037 0.00 0.00 40.52 1.31
428 429 8.262601 TGCTACTCCCTTCATTTCTGAATATA 57.737 34.615 0.00 0.00 40.52 0.86
429 430 7.141758 TGCTACTCCCTTCATTTCTGAATAT 57.858 36.000 0.00 0.00 40.52 1.28
430 431 6.560003 TGCTACTCCCTTCATTTCTGAATA 57.440 37.500 0.00 0.00 40.52 1.75
431 432 5.441718 TGCTACTCCCTTCATTTCTGAAT 57.558 39.130 0.00 0.00 40.52 2.57
432 433 4.908601 TGCTACTCCCTTCATTTCTGAA 57.091 40.909 0.00 0.00 39.07 3.02
433 434 6.753913 ATATGCTACTCCCTTCATTTCTGA 57.246 37.500 0.00 0.00 0.00 3.27
434 435 6.876257 GGTATATGCTACTCCCTTCATTTCTG 59.124 42.308 0.00 0.00 0.00 3.02
435 436 6.789959 AGGTATATGCTACTCCCTTCATTTCT 59.210 38.462 0.00 0.00 0.00 2.52
436 437 6.876257 CAGGTATATGCTACTCCCTTCATTTC 59.124 42.308 0.00 0.00 0.00 2.17
437 438 6.745474 GCAGGTATATGCTACTCCCTTCATTT 60.745 42.308 0.00 0.00 43.07 2.32
438 439 5.280215 GCAGGTATATGCTACTCCCTTCATT 60.280 44.000 0.00 0.00 43.07 2.57
439 440 4.223923 GCAGGTATATGCTACTCCCTTCAT 59.776 45.833 0.00 0.00 43.07 2.57
440 441 3.578716 GCAGGTATATGCTACTCCCTTCA 59.421 47.826 0.00 0.00 43.07 3.02
441 442 3.578716 TGCAGGTATATGCTACTCCCTTC 59.421 47.826 0.00 0.00 46.63 3.46
442 443 3.587498 TGCAGGTATATGCTACTCCCTT 58.413 45.455 0.00 0.00 46.63 3.95
443 444 3.260269 TGCAGGTATATGCTACTCCCT 57.740 47.619 0.00 0.00 46.63 4.20
444 445 4.256920 CATTGCAGGTATATGCTACTCCC 58.743 47.826 0.00 0.00 46.63 4.30
445 446 4.256920 CCATTGCAGGTATATGCTACTCC 58.743 47.826 0.00 0.00 46.63 3.85
446 447 4.899502 ACCATTGCAGGTATATGCTACTC 58.100 43.478 0.00 0.00 46.63 2.59
447 448 4.982241 ACCATTGCAGGTATATGCTACT 57.018 40.909 0.00 0.00 46.63 2.57
448 449 6.208644 CAAAACCATTGCAGGTATATGCTAC 58.791 40.000 0.00 0.00 46.63 3.58
449 450 5.301551 CCAAAACCATTGCAGGTATATGCTA 59.698 40.000 0.00 0.00 46.63 3.49
450 451 4.099881 CCAAAACCATTGCAGGTATATGCT 59.900 41.667 0.00 0.00 46.63 3.79
451 452 4.370917 CCAAAACCATTGCAGGTATATGC 58.629 43.478 0.00 0.00 42.25 3.14
452 453 4.099881 AGCCAAAACCATTGCAGGTATATG 59.900 41.667 0.00 0.00 42.25 1.78
453 454 4.099881 CAGCCAAAACCATTGCAGGTATAT 59.900 41.667 0.00 0.00 42.25 0.86
454 455 3.446873 CAGCCAAAACCATTGCAGGTATA 59.553 43.478 0.00 0.00 42.25 1.47
455 456 2.234414 CAGCCAAAACCATTGCAGGTAT 59.766 45.455 0.00 0.00 42.25 2.73
456 457 1.617850 CAGCCAAAACCATTGCAGGTA 59.382 47.619 0.00 0.00 42.25 3.08
457 458 0.393820 CAGCCAAAACCATTGCAGGT 59.606 50.000 0.00 0.00 45.91 4.00
458 459 0.320946 CCAGCCAAAACCATTGCAGG 60.321 55.000 0.00 0.00 0.00 4.85
459 460 0.393820 ACCAGCCAAAACCATTGCAG 59.606 50.000 0.00 0.00 0.00 4.41
460 461 1.617850 CTACCAGCCAAAACCATTGCA 59.382 47.619 0.00 0.00 0.00 4.08
461 462 1.618343 ACTACCAGCCAAAACCATTGC 59.382 47.619 0.00 0.00 0.00 3.56
462 463 2.095263 CGACTACCAGCCAAAACCATTG 60.095 50.000 0.00 0.00 0.00 2.82
463 464 2.159382 CGACTACCAGCCAAAACCATT 58.841 47.619 0.00 0.00 0.00 3.16
464 465 1.349688 TCGACTACCAGCCAAAACCAT 59.650 47.619 0.00 0.00 0.00 3.55
465 466 0.759959 TCGACTACCAGCCAAAACCA 59.240 50.000 0.00 0.00 0.00 3.67
466 467 1.439679 CTCGACTACCAGCCAAAACC 58.560 55.000 0.00 0.00 0.00 3.27
467 468 1.001633 TCCTCGACTACCAGCCAAAAC 59.998 52.381 0.00 0.00 0.00 2.43
468 469 1.344065 TCCTCGACTACCAGCCAAAA 58.656 50.000 0.00 0.00 0.00 2.44
469 470 1.344065 TTCCTCGACTACCAGCCAAA 58.656 50.000 0.00 0.00 0.00 3.28
470 471 1.344065 TTTCCTCGACTACCAGCCAA 58.656 50.000 0.00 0.00 0.00 4.52
471 472 1.568504 ATTTCCTCGACTACCAGCCA 58.431 50.000 0.00 0.00 0.00 4.75
472 473 2.694109 ACTATTTCCTCGACTACCAGCC 59.306 50.000 0.00 0.00 0.00 4.85
473 474 3.491104 CCACTATTTCCTCGACTACCAGC 60.491 52.174 0.00 0.00 0.00 4.85
474 475 3.491104 GCCACTATTTCCTCGACTACCAG 60.491 52.174 0.00 0.00 0.00 4.00
475 476 2.429610 GCCACTATTTCCTCGACTACCA 59.570 50.000 0.00 0.00 0.00 3.25
476 477 2.223994 GGCCACTATTTCCTCGACTACC 60.224 54.545 0.00 0.00 0.00 3.18
477 478 2.223994 GGGCCACTATTTCCTCGACTAC 60.224 54.545 4.39 0.00 0.00 2.73
478 479 2.037144 GGGCCACTATTTCCTCGACTA 58.963 52.381 4.39 0.00 0.00 2.59
479 480 0.831307 GGGCCACTATTTCCTCGACT 59.169 55.000 4.39 0.00 0.00 4.18
480 481 0.179054 GGGGCCACTATTTCCTCGAC 60.179 60.000 4.39 0.00 0.00 4.20
481 482 0.619255 TGGGGCCACTATTTCCTCGA 60.619 55.000 6.53 0.00 0.00 4.04
482 483 0.463833 GTGGGGCCACTATTTCCTCG 60.464 60.000 6.53 0.00 43.12 4.63
483 484 0.623723 TGTGGGGCCACTATTTCCTC 59.376 55.000 6.53 0.00 46.30 3.71
484 485 0.625849 CTGTGGGGCCACTATTTCCT 59.374 55.000 6.53 0.00 46.30 3.36
485 486 1.037579 GCTGTGGGGCCACTATTTCC 61.038 60.000 6.53 0.00 46.30 3.13
486 487 1.376609 CGCTGTGGGGCCACTATTTC 61.377 60.000 6.53 0.00 46.30 2.17
487 488 1.378514 CGCTGTGGGGCCACTATTT 60.379 57.895 6.53 0.00 46.30 1.40
488 489 2.257409 CTCGCTGTGGGGCCACTATT 62.257 60.000 6.53 0.00 46.30 1.73
489 490 2.687200 TCGCTGTGGGGCCACTAT 60.687 61.111 6.53 0.00 46.30 2.12
490 491 3.390521 CTCGCTGTGGGGCCACTA 61.391 66.667 6.53 0.00 46.30 2.74
492 493 4.767255 CTCTCGCTGTGGGGCCAC 62.767 72.222 4.39 0.00 46.33 5.01
496 497 4.504916 CTCGCTCTCGCTGTGGGG 62.505 72.222 0.00 0.00 35.26 4.96
497 498 4.504916 CCTCGCTCTCGCTGTGGG 62.505 72.222 0.00 0.00 35.26 4.61
498 499 2.771763 AAACCTCGCTCTCGCTGTGG 62.772 60.000 0.00 0.00 35.26 4.17
499 500 1.373497 AAACCTCGCTCTCGCTGTG 60.373 57.895 0.00 0.00 35.26 3.66
500 501 1.373497 CAAACCTCGCTCTCGCTGT 60.373 57.895 0.00 0.00 35.26 4.40
501 502 0.459237 ATCAAACCTCGCTCTCGCTG 60.459 55.000 0.00 0.00 35.26 5.18
502 503 0.459237 CATCAAACCTCGCTCTCGCT 60.459 55.000 0.00 0.00 35.26 4.93
503 504 1.424493 CCATCAAACCTCGCTCTCGC 61.424 60.000 0.00 0.00 35.26 5.03
504 505 1.424493 GCCATCAAACCTCGCTCTCG 61.424 60.000 0.00 0.00 0.00 4.04
505 506 1.092345 GGCCATCAAACCTCGCTCTC 61.092 60.000 0.00 0.00 0.00 3.20
506 507 1.078143 GGCCATCAAACCTCGCTCT 60.078 57.895 0.00 0.00 0.00 4.09
507 508 2.464459 CGGCCATCAAACCTCGCTC 61.464 63.158 2.24 0.00 0.00 5.03
508 509 2.436646 CGGCCATCAAACCTCGCT 60.437 61.111 2.24 0.00 0.00 4.93
509 510 2.435938 TCGGCCATCAAACCTCGC 60.436 61.111 2.24 0.00 0.00 5.03
510 511 1.361668 CTGTCGGCCATCAAACCTCG 61.362 60.000 2.24 0.00 0.00 4.63
511 512 1.648467 GCTGTCGGCCATCAAACCTC 61.648 60.000 2.24 0.00 34.27 3.85
512 513 1.675641 GCTGTCGGCCATCAAACCT 60.676 57.895 2.24 0.00 34.27 3.50
513 514 1.244019 AAGCTGTCGGCCATCAAACC 61.244 55.000 2.24 0.00 43.05 3.27
514 515 0.169009 GAAGCTGTCGGCCATCAAAC 59.831 55.000 2.24 0.00 43.05 2.93
515 516 0.036732 AGAAGCTGTCGGCCATCAAA 59.963 50.000 2.24 0.00 43.05 2.69
516 517 0.391661 GAGAAGCTGTCGGCCATCAA 60.392 55.000 2.24 0.00 43.05 2.57
517 518 1.219124 GAGAAGCTGTCGGCCATCA 59.781 57.895 2.24 0.00 43.05 3.07
518 519 0.809241 CTGAGAAGCTGTCGGCCATC 60.809 60.000 2.24 0.00 43.05 3.51
519 520 1.220206 CTGAGAAGCTGTCGGCCAT 59.780 57.895 2.24 0.00 43.05 4.40
520 521 2.659016 CTGAGAAGCTGTCGGCCA 59.341 61.111 2.24 0.00 43.05 5.36
521 522 2.817396 GCTGAGAAGCTGTCGGCC 60.817 66.667 16.23 0.00 39.98 6.13
522 523 3.184683 CGCTGAGAAGCTGTCGGC 61.185 66.667 16.86 16.86 42.07 5.54
523 524 2.507992 CCGCTGAGAAGCTGTCGG 60.508 66.667 0.00 0.00 0.00 4.79
524 525 3.184683 GCCGCTGAGAAGCTGTCG 61.185 66.667 0.00 0.00 0.00 4.35
525 526 2.047844 TGCCGCTGAGAAGCTGTC 60.048 61.111 0.00 0.00 0.00 3.51
526 527 2.047465 CTGCCGCTGAGAAGCTGT 60.047 61.111 0.00 0.00 0.00 4.40
527 528 3.497932 GCTGCCGCTGAGAAGCTG 61.498 66.667 0.73 0.00 32.82 4.24
528 529 3.704207 AGCTGCCGCTGAGAAGCT 61.704 61.111 0.21 0.00 46.86 3.74
537 538 4.748679 CTGCGTTTCAGCTGCCGC 62.749 66.667 27.30 27.30 45.92 6.53
538 539 4.093952 CCTGCGTTTCAGCTGCCG 62.094 66.667 9.47 12.10 41.50 5.69
539 540 2.669569 TCCTGCGTTTCAGCTGCC 60.670 61.111 9.47 0.00 41.50 4.85
540 541 2.684843 CCTCCTGCGTTTCAGCTGC 61.685 63.158 9.47 0.00 41.50 5.25
541 542 2.684843 GCCTCCTGCGTTTCAGCTG 61.685 63.158 7.63 7.63 41.50 4.24
542 543 2.359230 GCCTCCTGCGTTTCAGCT 60.359 61.111 0.00 0.00 41.50 4.24
543 544 3.435186 GGCCTCCTGCGTTTCAGC 61.435 66.667 0.00 0.00 41.50 4.26
544 545 2.747855 GGGCCTCCTGCGTTTCAG 60.748 66.667 0.84 0.00 42.61 3.02
545 546 3.249189 AGGGCCTCCTGCGTTTCA 61.249 61.111 0.00 0.00 42.98 2.69
561 562 4.694233 AGCAGTCCGCAGCCACAG 62.694 66.667 0.00 0.00 46.13 3.66
562 563 4.687215 GAGCAGTCCGCAGCCACA 62.687 66.667 0.00 0.00 46.13 4.17
571 572 4.518970 TCAATGTTAAACAAGGAGCAGTCC 59.481 41.667 0.00 0.00 44.33 3.85
572 573 5.008613 TGTCAATGTTAAACAAGGAGCAGTC 59.991 40.000 0.00 0.00 0.00 3.51
573 574 4.887071 TGTCAATGTTAAACAAGGAGCAGT 59.113 37.500 0.00 0.00 0.00 4.40
574 575 5.437289 TGTCAATGTTAAACAAGGAGCAG 57.563 39.130 0.00 0.00 0.00 4.24
575 576 6.215121 CAATGTCAATGTTAAACAAGGAGCA 58.785 36.000 0.00 0.00 0.00 4.26
576 577 5.119125 GCAATGTCAATGTTAAACAAGGAGC 59.881 40.000 0.00 0.00 0.00 4.70
577 578 5.343058 CGCAATGTCAATGTTAAACAAGGAG 59.657 40.000 0.00 0.00 0.00 3.69
578 579 5.218885 CGCAATGTCAATGTTAAACAAGGA 58.781 37.500 0.00 0.00 0.00 3.36
579 580 4.385447 CCGCAATGTCAATGTTAAACAAGG 59.615 41.667 0.00 0.00 0.00 3.61
580 581 4.385447 CCCGCAATGTCAATGTTAAACAAG 59.615 41.667 0.00 0.00 0.00 3.16
581 582 4.038042 TCCCGCAATGTCAATGTTAAACAA 59.962 37.500 0.00 0.00 0.00 2.83
582 583 3.570125 TCCCGCAATGTCAATGTTAAACA 59.430 39.130 0.00 0.00 0.00 2.83
583 584 4.165779 CTCCCGCAATGTCAATGTTAAAC 58.834 43.478 0.00 0.00 0.00 2.01
584 585 3.823873 ACTCCCGCAATGTCAATGTTAAA 59.176 39.130 0.00 0.00 0.00 1.52
585 586 3.190327 CACTCCCGCAATGTCAATGTTAA 59.810 43.478 0.00 0.00 0.00 2.01
586 587 2.746904 CACTCCCGCAATGTCAATGTTA 59.253 45.455 0.00 0.00 0.00 2.41
587 588 1.541147 CACTCCCGCAATGTCAATGTT 59.459 47.619 0.00 0.00 0.00 2.71
588 589 1.167851 CACTCCCGCAATGTCAATGT 58.832 50.000 0.00 0.00 0.00 2.71
589 590 1.167851 ACACTCCCGCAATGTCAATG 58.832 50.000 0.00 0.00 0.00 2.82
590 591 1.909700 AACACTCCCGCAATGTCAAT 58.090 45.000 0.00 0.00 0.00 2.57
591 592 1.336440 CAAACACTCCCGCAATGTCAA 59.664 47.619 0.00 0.00 0.00 3.18
592 593 0.950836 CAAACACTCCCGCAATGTCA 59.049 50.000 0.00 0.00 0.00 3.58
593 594 1.069227 GTCAAACACTCCCGCAATGTC 60.069 52.381 0.00 0.00 0.00 3.06
594 595 0.951558 GTCAAACACTCCCGCAATGT 59.048 50.000 0.00 0.00 0.00 2.71
595 596 0.950836 TGTCAAACACTCCCGCAATG 59.049 50.000 0.00 0.00 0.00 2.82
596 597 1.686355 TTGTCAAACACTCCCGCAAT 58.314 45.000 0.00 0.00 0.00 3.56
597 598 1.464734 TTTGTCAAACACTCCCGCAA 58.535 45.000 0.00 0.00 0.00 4.85
598 599 1.464734 TTTTGTCAAACACTCCCGCA 58.535 45.000 0.00 0.00 0.00 5.69
599 600 2.570442 TTTTTGTCAAACACTCCCGC 57.430 45.000 0.00 0.00 0.00 6.13
622 625 1.827399 GACGGAAGCCCCAGTTCTGA 61.827 60.000 1.00 0.00 34.80 3.27
689 693 3.078594 AGTTTTTCACGCGCTTTCAAT 57.921 38.095 5.73 0.00 0.00 2.57
691 695 2.286536 GGTAGTTTTTCACGCGCTTTCA 60.287 45.455 5.73 0.00 0.00 2.69
695 699 1.263217 CTTGGTAGTTTTTCACGCGCT 59.737 47.619 5.73 0.00 0.00 5.92
696 700 1.003223 ACTTGGTAGTTTTTCACGCGC 60.003 47.619 5.73 0.00 0.00 6.86
697 701 3.033185 CAACTTGGTAGTTTTTCACGCG 58.967 45.455 3.53 3.53 41.85 6.01
698 702 4.033019 GTCAACTTGGTAGTTTTTCACGC 58.967 43.478 0.00 0.00 41.85 5.34
699 703 4.095185 TGGTCAACTTGGTAGTTTTTCACG 59.905 41.667 0.00 0.00 41.85 4.35
700 704 5.570234 TGGTCAACTTGGTAGTTTTTCAC 57.430 39.130 0.00 0.00 41.85 3.18
701 705 6.783708 ATTGGTCAACTTGGTAGTTTTTCA 57.216 33.333 0.00 0.00 41.85 2.69
981 1002 4.702081 GTCAGTCGTGGCGTCGCT 62.702 66.667 18.11 0.00 0.00 4.93
1224 1246 2.158755 ACAGTGTTAGGAGTTTGCTGCT 60.159 45.455 0.00 0.00 45.56 4.24
1361 1383 0.818296 ACCTCAGTAGCACATCCGAC 59.182 55.000 0.00 0.00 0.00 4.79
2312 2342 9.363763 CAGTTCATAGGCAGTTCATATATAGTG 57.636 37.037 0.00 0.00 0.00 2.74
2664 2721 7.957484 CGTCAGTTATGTTTATCTGAAACTTGG 59.043 37.037 0.00 0.00 36.43 3.61
2851 2908 2.235650 CAGAAGCAGACAGATCCAAGGA 59.764 50.000 0.00 0.00 0.00 3.36
3137 3197 3.479489 TCAAGAGAAGAAGTGCATGCAA 58.521 40.909 24.58 3.50 0.00 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.