Multiple sequence alignment - TraesCS4D01G308700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G308700 chr4D 100.000 5499 0 0 944 6442 476865549 476871047 0.000000e+00 10155.0
1 TraesCS4D01G308700 chr4D 100.000 531 0 0 1 531 476864606 476865136 0.000000e+00 981.0
2 TraesCS4D01G308700 chr4D 94.505 91 3 2 3705 3794 169122921 169123010 8.710000e-29 139.0
3 TraesCS4D01G308700 chr4D 90.426 94 8 1 1 93 381095492 381095399 8.770000e-24 122.0
4 TraesCS4D01G308700 chr4D 94.118 51 3 0 3662 3712 169122997 169122947 1.930000e-10 78.7
5 TraesCS4D01G308700 chr4B 91.370 1599 95 10 3264 4847 600919575 600921145 0.000000e+00 2148.0
6 TraesCS4D01G308700 chr4B 93.123 1236 65 13 1804 3027 600918110 600919337 0.000000e+00 1794.0
7 TraesCS4D01G308700 chr4B 88.863 1302 83 32 5128 6409 600921555 600922814 0.000000e+00 1544.0
8 TraesCS4D01G308700 chr4B 88.426 648 35 20 944 1562 600917203 600917839 0.000000e+00 745.0
9 TraesCS4D01G308700 chr4B 84.513 452 22 29 100 531 600916470 600916893 2.800000e-108 403.0
10 TraesCS4D01G308700 chr4B 96.226 212 8 0 3020 3231 600919362 600919573 1.330000e-91 348.0
11 TraesCS4D01G308700 chr4B 95.604 91 2 2 3705 3794 215918407 215918318 1.870000e-30 145.0
12 TraesCS4D01G308700 chr4B 82.258 124 1 9 3662 3785 215918331 215918433 3.200000e-13 87.9
13 TraesCS4D01G308700 chr4B 85.714 77 11 0 3662 3738 660686963 660686887 1.490000e-11 82.4
14 TraesCS4D01G308700 chr4A 90.722 1455 91 10 1592 3027 683606791 683608220 0.000000e+00 1899.0
15 TraesCS4D01G308700 chr4A 90.898 813 60 6 3880 4689 683609243 683610044 0.000000e+00 1079.0
16 TraesCS4D01G308700 chr4A 94.393 642 22 4 3021 3662 683608246 683608873 0.000000e+00 974.0
17 TraesCS4D01G308700 chr4A 84.783 736 61 23 5695 6388 683611134 683611860 0.000000e+00 691.0
18 TraesCS4D01G308700 chr4A 85.759 639 41 22 973 1564 683606163 683606798 1.180000e-176 630.0
19 TraesCS4D01G308700 chr4A 84.733 524 36 25 5128 5642 683610627 683611115 9.710000e-133 484.0
20 TraesCS4D01G308700 chr4A 82.267 344 25 14 102 425 683605405 683605732 1.380000e-66 265.0
21 TraesCS4D01G308700 chr4A 79.934 304 28 12 4687 4973 683610241 683610528 6.590000e-45 193.0
22 TraesCS4D01G308700 chr4A 93.478 92 4 2 3705 3795 292925300 292925210 1.130000e-27 135.0
23 TraesCS4D01G308700 chr4A 94.118 51 3 0 3662 3712 292925224 292925274 1.930000e-10 78.7
24 TraesCS4D01G308700 chr3B 93.487 783 35 9 4627 5403 26535256 26536028 0.000000e+00 1149.0
25 TraesCS4D01G308700 chr3B 93.969 713 30 6 4700 5403 378768813 378769521 0.000000e+00 1066.0
26 TraesCS4D01G308700 chr3B 78.788 264 42 11 2435 2694 448772336 448772589 1.440000e-36 165.0
27 TraesCS4D01G308700 chr3B 94.118 51 3 0 3662 3712 672778083 672778133 1.930000e-10 78.7
28 TraesCS4D01G308700 chr7B 94.922 709 27 4 4700 5403 616473568 616474272 0.000000e+00 1101.0
29 TraesCS4D01G308700 chr2B 94.781 709 28 4 4700 5403 690338247 690337543 0.000000e+00 1096.0
30 TraesCS4D01G308700 chr6B 92.465 783 31 14 4627 5403 1948098 1948858 0.000000e+00 1094.0
31 TraesCS4D01G308700 chr6B 94.499 709 30 4 4700 5403 31047217 31046513 0.000000e+00 1085.0
32 TraesCS4D01G308700 chr6B 92.593 54 1 2 3651 3704 506389418 506389368 2.490000e-09 75.0
33 TraesCS4D01G308700 chrUn 96.889 225 6 1 4924 5147 259646935 259647159 6.100000e-100 375.0
34 TraesCS4D01G308700 chrUn 93.023 258 13 3 5148 5403 259647447 259647701 7.890000e-99 372.0
35 TraesCS4D01G308700 chrUn 100.000 28 0 0 1560 1587 290640417 290640444 1.200000e-02 52.8
36 TraesCS4D01G308700 chrUn 100.000 28 0 0 1560 1587 290646142 290646169 1.200000e-02 52.8
37 TraesCS4D01G308700 chrUn 96.774 31 1 0 1560 1590 320336047 320336017 1.200000e-02 52.8
38 TraesCS4D01G308700 chr2A 95.506 89 4 0 3698 3786 590402459 590402547 6.730000e-30 143.0
39 TraesCS4D01G308700 chr2A 96.471 85 2 1 3705 3789 205917680 205917597 8.710000e-29 139.0
40 TraesCS4D01G308700 chr2A 91.489 94 7 1 1 93 166851529 166851436 1.890000e-25 128.0
41 TraesCS4D01G308700 chr2A 91.489 94 7 1 1 93 513819894 513819801 1.890000e-25 128.0
42 TraesCS4D01G308700 chr2A 96.078 51 2 0 3662 3712 590402542 590402492 4.140000e-12 84.2
43 TraesCS4D01G308700 chr1D 87.200 125 15 1 1023 1147 196489017 196488894 2.420000e-29 141.0
44 TraesCS4D01G308700 chr1D 92.553 94 6 1 1 93 433907807 433907714 4.050000e-27 134.0
45 TraesCS4D01G308700 chr1D 91.489 94 7 1 1 93 324703362 324703269 1.890000e-25 128.0
46 TraesCS4D01G308700 chr1D 91.489 94 7 1 1 93 469095763 469095670 1.890000e-25 128.0
47 TraesCS4D01G308700 chr1D 91.954 87 5 2 2626 2710 196487325 196487239 3.150000e-23 121.0
48 TraesCS4D01G308700 chr7A 95.402 87 3 1 3705 3791 252178478 252178393 3.130000e-28 137.0
49 TraesCS4D01G308700 chr3D 75.325 308 62 13 2371 2670 349855065 349855366 1.130000e-27 135.0
50 TraesCS4D01G308700 chr1B 86.400 125 16 1 1023 1147 269036881 269037004 1.130000e-27 135.0
51 TraesCS4D01G308700 chr1B 93.827 81 4 1 2631 2710 269038550 269038630 3.150000e-23 121.0
52 TraesCS4D01G308700 chr1A 86.400 125 16 1 1023 1147 245536609 245536486 1.130000e-27 135.0
53 TraesCS4D01G308700 chr1A 93.103 87 4 2 2626 2710 245534844 245534758 6.780000e-25 126.0
54 TraesCS4D01G308700 chr1A 100.000 42 0 0 3662 3703 583884692 583884733 1.930000e-10 78.7
55 TraesCS4D01G308700 chr7D 95.294 85 3 1 3707 3791 236821614 236821531 4.050000e-27 134.0
56 TraesCS4D01G308700 chr7D 92.553 94 6 1 1 93 565207526 565207433 4.050000e-27 134.0
57 TraesCS4D01G308700 chr7D 93.333 90 4 2 3705 3793 294047746 294047658 1.460000e-26 132.0
58 TraesCS4D01G308700 chr6D 91.489 94 7 1 1 93 363852319 363852226 1.890000e-25 128.0
59 TraesCS4D01G308700 chr2D 91.489 94 7 1 1 93 586773983 586773890 1.890000e-25 128.0
60 TraesCS4D01G308700 chr5D 93.478 46 2 1 1037 1081 278310612 278310657 4.170000e-07 67.6
61 TraesCS4D01G308700 chr5B 93.478 46 2 1 1037 1081 316378435 316378480 4.170000e-07 67.6
62 TraesCS4D01G308700 chr5A 93.478 46 2 1 1037 1081 370192167 370192122 4.170000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G308700 chr4D 476864606 476871047 6441 False 5568.000000 10155 100.000000 1 6442 2 chr4D.!!$F2 6441
1 TraesCS4D01G308700 chr4B 600916470 600922814 6344 False 1163.666667 2148 90.420167 100 6409 6 chr4B.!!$F2 6309
2 TraesCS4D01G308700 chr4A 683605405 683611860 6455 False 776.875000 1899 86.686125 102 6388 8 chr4A.!!$F2 6286
3 TraesCS4D01G308700 chr3B 26535256 26536028 772 False 1149.000000 1149 93.487000 4627 5403 1 chr3B.!!$F1 776
4 TraesCS4D01G308700 chr3B 378768813 378769521 708 False 1066.000000 1066 93.969000 4700 5403 1 chr3B.!!$F2 703
5 TraesCS4D01G308700 chr7B 616473568 616474272 704 False 1101.000000 1101 94.922000 4700 5403 1 chr7B.!!$F1 703
6 TraesCS4D01G308700 chr2B 690337543 690338247 704 True 1096.000000 1096 94.781000 4700 5403 1 chr2B.!!$R1 703
7 TraesCS4D01G308700 chr6B 1948098 1948858 760 False 1094.000000 1094 92.465000 4627 5403 1 chr6B.!!$F1 776
8 TraesCS4D01G308700 chr6B 31046513 31047217 704 True 1085.000000 1085 94.499000 4700 5403 1 chr6B.!!$R1 703
9 TraesCS4D01G308700 chrUn 259646935 259647701 766 False 373.500000 375 94.956000 4924 5403 2 chrUn.!!$F3 479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 69 0.039527 AAAGGAACAAATGCGCCGTC 60.040 50.000 4.18 0.0 0.00 4.79 F
98 99 0.108851 GCCCCATTGCAGTTTTACGG 60.109 55.000 0.00 0.0 0.00 4.02 F
2028 2210 0.181350 CCAGCCTCACCTTATGTCCC 59.819 60.000 0.00 0.0 0.00 4.46 F
2451 2645 0.109342 CACTTGGGCTGTTCTGTCCT 59.891 55.000 2.40 0.0 31.91 3.85 F
2918 3116 1.271926 GGTGCCACTGTTAATGGTCCT 60.272 52.381 0.00 0.0 39.63 3.85 F
3550 3780 1.466856 TGTTCCATTCCAGCTCATGC 58.533 50.000 0.00 0.0 40.05 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2028 2210 0.105039 GTTGGATGCCCTCCTACTCG 59.895 60.000 8.94 0.00 43.85 4.18 R
2034 2216 2.173569 ACTGAATAGTTGGATGCCCTCC 59.826 50.000 0.00 0.00 45.19 4.30 R
3699 3929 0.530744 ACATCCGTTTGAGCGCTAGA 59.469 50.000 11.50 0.00 0.00 2.43 R
4347 4850 0.761187 TCTCTCCAGCTGTGCTTTGT 59.239 50.000 13.81 0.00 36.40 2.83 R
4531 5037 1.464997 GGAACTTGACGAACTGATGGC 59.535 52.381 0.00 0.00 0.00 4.40 R
5443 6734 1.539065 GCATACAGTGACTGGATCGGG 60.539 57.143 17.92 3.39 31.81 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.189539 AATGCAAAACTGGGCGGA 57.810 50.000 0.00 0.00 0.00 5.54
18 19 1.665442 AATGCAAAACTGGGCGGAC 59.335 52.632 0.00 0.00 0.00 4.79
19 20 2.141122 AATGCAAAACTGGGCGGACG 62.141 55.000 0.00 0.00 0.00 4.79
20 21 4.700365 GCAAAACTGGGCGGACGC 62.700 66.667 8.39 8.39 41.06 5.19
43 44 3.708734 GGGCGACCGACACAAACG 61.709 66.667 0.00 0.00 43.64 3.60
53 54 2.446282 CGACACAAACGGACAAAAAGG 58.554 47.619 0.00 0.00 0.00 3.11
54 55 2.096174 CGACACAAACGGACAAAAAGGA 59.904 45.455 0.00 0.00 0.00 3.36
55 56 3.426426 CGACACAAACGGACAAAAAGGAA 60.426 43.478 0.00 0.00 0.00 3.36
56 57 3.840468 ACACAAACGGACAAAAAGGAAC 58.160 40.909 0.00 0.00 0.00 3.62
57 58 3.256136 ACACAAACGGACAAAAAGGAACA 59.744 39.130 0.00 0.00 0.00 3.18
58 59 4.238514 CACAAACGGACAAAAAGGAACAA 58.761 39.130 0.00 0.00 0.00 2.83
59 60 4.686554 CACAAACGGACAAAAAGGAACAAA 59.313 37.500 0.00 0.00 0.00 2.83
60 61 5.350091 CACAAACGGACAAAAAGGAACAAAT 59.650 36.000 0.00 0.00 0.00 2.32
61 62 5.350091 ACAAACGGACAAAAAGGAACAAATG 59.650 36.000 0.00 0.00 0.00 2.32
62 63 3.453424 ACGGACAAAAAGGAACAAATGC 58.547 40.909 0.00 0.00 0.00 3.56
63 64 2.470999 CGGACAAAAAGGAACAAATGCG 59.529 45.455 0.00 0.00 0.00 4.73
64 65 2.220824 GGACAAAAAGGAACAAATGCGC 59.779 45.455 0.00 0.00 0.00 6.09
65 66 2.209273 ACAAAAAGGAACAAATGCGCC 58.791 42.857 4.18 0.00 0.00 6.53
66 67 1.192090 CAAAAAGGAACAAATGCGCCG 59.808 47.619 4.18 0.00 0.00 6.46
67 68 0.387565 AAAAGGAACAAATGCGCCGT 59.612 45.000 4.18 0.00 0.00 5.68
68 69 0.039527 AAAGGAACAAATGCGCCGTC 60.040 50.000 4.18 0.00 0.00 4.79
69 70 1.862602 AAGGAACAAATGCGCCGTCC 61.863 55.000 4.18 2.31 0.00 4.79
70 71 2.202298 GAACAAATGCGCCGTCCG 60.202 61.111 4.18 0.00 40.75 4.79
71 72 2.961669 GAACAAATGCGCCGTCCGT 61.962 57.895 4.18 0.00 39.71 4.69
72 73 2.452366 GAACAAATGCGCCGTCCGTT 62.452 55.000 4.18 1.48 39.71 4.44
73 74 2.065906 AACAAATGCGCCGTCCGTTT 62.066 50.000 4.18 0.00 39.71 3.60
74 75 2.080062 CAAATGCGCCGTCCGTTTG 61.080 57.895 4.18 3.18 39.71 2.93
75 76 3.262142 AAATGCGCCGTCCGTTTGG 62.262 57.895 4.18 0.00 39.71 3.28
92 93 2.676471 GGTCGCCCCATTGCAGTT 60.676 61.111 0.00 0.00 0.00 3.16
93 94 2.275380 GGTCGCCCCATTGCAGTTT 61.275 57.895 0.00 0.00 0.00 2.66
94 95 1.665442 GTCGCCCCATTGCAGTTTT 59.335 52.632 0.00 0.00 0.00 2.43
95 96 0.885196 GTCGCCCCATTGCAGTTTTA 59.115 50.000 0.00 0.00 0.00 1.52
96 97 0.885196 TCGCCCCATTGCAGTTTTAC 59.115 50.000 0.00 0.00 0.00 2.01
97 98 0.455972 CGCCCCATTGCAGTTTTACG 60.456 55.000 0.00 0.00 0.00 3.18
98 99 0.108851 GCCCCATTGCAGTTTTACGG 60.109 55.000 0.00 0.00 0.00 4.02
109 110 3.184178 GCAGTTTTACGGTTACACGCTTA 59.816 43.478 0.00 0.00 37.37 3.09
119 122 3.057033 GGTTACACGCTTAGAGTTCCAGA 60.057 47.826 0.00 0.00 0.00 3.86
177 186 4.927782 GGGCGGCAGACACACACA 62.928 66.667 12.47 0.00 0.00 3.72
445 473 3.655810 CTGCAGTCCAGTCCGCCTC 62.656 68.421 5.25 0.00 36.79 4.70
478 507 1.022982 GTCGTTCCGTTTCCATCCCC 61.023 60.000 0.00 0.00 0.00 4.81
479 508 2.104253 CGTTCCGTTTCCATCCCCG 61.104 63.158 0.00 0.00 0.00 5.73
480 509 2.045731 TTCCGTTTCCATCCCCGC 60.046 61.111 0.00 0.00 0.00 6.13
481 510 2.598787 TTCCGTTTCCATCCCCGCT 61.599 57.895 0.00 0.00 0.00 5.52
482 511 2.813226 TTCCGTTTCCATCCCCGCTG 62.813 60.000 0.00 0.00 0.00 5.18
483 512 2.267642 CGTTTCCATCCCCGCTGA 59.732 61.111 0.00 0.00 0.00 4.26
486 518 2.978946 TTTCCATCCCCGCTGACCC 61.979 63.158 0.00 0.00 0.00 4.46
507 539 2.612251 CTCCCCTCCTCCCTCTCC 59.388 72.222 0.00 0.00 0.00 3.71
509 541 4.548513 CCCCTCCTCCCTCTCCCG 62.549 77.778 0.00 0.00 0.00 5.14
510 542 3.756783 CCCTCCTCCCTCTCCCGT 61.757 72.222 0.00 0.00 0.00 5.28
511 543 2.123640 CCTCCTCCCTCTCCCGTC 60.124 72.222 0.00 0.00 0.00 4.79
512 544 2.517402 CTCCTCCCTCTCCCGTCG 60.517 72.222 0.00 0.00 0.00 5.12
514 546 4.824515 CCTCCCTCTCCCGTCGCT 62.825 72.222 0.00 0.00 0.00 4.93
525 558 1.134610 TCCCGTCGCTTTTATTCCCTC 60.135 52.381 0.00 0.00 0.00 4.30
1144 1177 1.203137 TCTCCCCCACCATAGGTATCG 60.203 57.143 0.00 0.00 32.11 2.92
1146 1179 0.974383 CCCCCACCATAGGTATCGTC 59.026 60.000 0.00 0.00 32.11 4.20
1181 1227 4.292178 CCCTGGATCTCGCTCGCC 62.292 72.222 0.00 0.00 0.00 5.54
1201 1271 1.078848 CTTGCCCCGACTTGGAGAG 60.079 63.158 0.00 0.00 42.00 3.20
1202 1272 2.527951 CTTGCCCCGACTTGGAGAGG 62.528 65.000 0.00 0.00 42.00 3.69
1212 1282 3.561725 CGACTTGGAGAGGGCAATAAATC 59.438 47.826 0.00 0.00 0.00 2.17
1294 1374 1.267574 TGCCCCGCTCTTCTCTTCAT 61.268 55.000 0.00 0.00 0.00 2.57
1346 1426 5.048713 GCGTATACGTACCAAACCTACCTAT 60.049 44.000 25.04 0.00 42.22 2.57
1350 1433 9.014297 GTATACGTACCAAACCTACCTATGTAT 57.986 37.037 0.00 0.00 0.00 2.29
1352 1435 7.896383 ACGTACCAAACCTACCTATGTATTA 57.104 36.000 0.00 0.00 0.00 0.98
1375 1458 4.656112 ACTAGATGATAGTTGTTGGGGGAG 59.344 45.833 0.00 0.00 0.00 4.30
1386 1469 1.273327 GTTGGGGGAGCAGTTCAATTG 59.727 52.381 0.00 0.00 0.00 2.32
1387 1470 0.776810 TGGGGGAGCAGTTCAATTGA 59.223 50.000 3.38 3.38 0.00 2.57
1388 1471 1.272092 TGGGGGAGCAGTTCAATTGAG 60.272 52.381 8.41 0.00 0.00 3.02
1389 1472 1.467920 GGGGAGCAGTTCAATTGAGG 58.532 55.000 8.41 4.06 0.00 3.86
1408 1496 0.676782 GAGGGATCAACCAACACCGG 60.677 60.000 0.00 0.00 41.20 5.28
1488 1584 5.901884 CGTAACTGCTTATTAATTGCTTCCG 59.098 40.000 12.30 2.24 0.00 4.30
1490 1586 3.242739 ACTGCTTATTAATTGCTTCCGCG 60.243 43.478 0.00 0.00 39.65 6.46
1505 1601 2.250485 GCGTCTGTGTTGCAGCTG 59.750 61.111 10.11 10.11 44.66 4.24
1566 1666 7.412853 TCCTGCCTAAACATTTATTTTACCC 57.587 36.000 0.00 0.00 0.00 3.69
1567 1667 6.954684 TCCTGCCTAAACATTTATTTTACCCA 59.045 34.615 0.00 0.00 0.00 4.51
1568 1668 7.455008 TCCTGCCTAAACATTTATTTTACCCAA 59.545 33.333 0.00 0.00 0.00 4.12
1569 1669 8.097662 CCTGCCTAAACATTTATTTTACCCAAA 58.902 33.333 0.00 0.00 0.00 3.28
1570 1670 9.665719 CTGCCTAAACATTTATTTTACCCAAAT 57.334 29.630 0.00 0.00 38.69 2.32
1571 1671 9.442047 TGCCTAAACATTTATTTTACCCAAATG 57.558 29.630 5.06 5.06 42.61 2.32
1572 1672 9.660180 GCCTAAACATTTATTTTACCCAAATGA 57.340 29.630 11.93 0.00 40.49 2.57
1580 1680 9.830975 ATTTATTTTACCCAAATGATAAGTGCC 57.169 29.630 0.00 0.00 35.71 5.01
1581 1681 6.865834 ATTTTACCCAAATGATAAGTGCCA 57.134 33.333 0.00 0.00 33.47 4.92
1582 1682 5.652994 TTTACCCAAATGATAAGTGCCAC 57.347 39.130 0.00 0.00 0.00 5.01
1583 1683 3.168035 ACCCAAATGATAAGTGCCACA 57.832 42.857 0.00 0.00 0.00 4.17
1584 1684 2.825532 ACCCAAATGATAAGTGCCACAC 59.174 45.455 0.00 0.00 34.10 3.82
1585 1685 2.159393 CCCAAATGATAAGTGCCACACG 60.159 50.000 0.00 0.00 39.64 4.49
1586 1686 2.487762 CCAAATGATAAGTGCCACACGT 59.512 45.455 0.00 0.00 39.64 4.49
1587 1687 3.057596 CCAAATGATAAGTGCCACACGTT 60.058 43.478 0.00 0.00 39.64 3.99
1588 1688 4.545610 CAAATGATAAGTGCCACACGTTT 58.454 39.130 0.00 0.00 39.64 3.60
1589 1689 3.829886 ATGATAAGTGCCACACGTTTG 57.170 42.857 0.00 0.00 39.64 2.93
1590 1690 1.265635 TGATAAGTGCCACACGTTTGC 59.734 47.619 0.00 0.00 39.64 3.68
1591 1691 1.535462 GATAAGTGCCACACGTTTGCT 59.465 47.619 0.00 0.00 39.64 3.91
1592 1692 1.384525 TAAGTGCCACACGTTTGCTT 58.615 45.000 0.00 0.00 39.64 3.91
1593 1693 1.384525 AAGTGCCACACGTTTGCTTA 58.615 45.000 0.00 0.00 39.64 3.09
1594 1694 1.604604 AGTGCCACACGTTTGCTTAT 58.395 45.000 0.00 0.00 39.64 1.73
1595 1695 1.953686 AGTGCCACACGTTTGCTTATT 59.046 42.857 0.00 0.00 39.64 1.40
1596 1696 2.360801 AGTGCCACACGTTTGCTTATTT 59.639 40.909 0.00 0.00 39.64 1.40
1604 1704 6.866248 CCACACGTTTGCTTATTTAAAGGAAT 59.134 34.615 0.00 0.00 0.00 3.01
1606 1706 7.061789 CACACGTTTGCTTATTTAAAGGAATCC 59.938 37.037 0.00 0.00 0.00 3.01
1678 1782 2.053627 GTGCAAACATGTGTAAGCAGC 58.946 47.619 13.01 2.32 38.18 5.25
1679 1783 1.330306 GCAAACATGTGTAAGCAGCG 58.670 50.000 0.00 0.00 0.00 5.18
1710 1814 3.282021 GCATCAGGTTGCCATCTTCTTA 58.718 45.455 0.00 0.00 36.60 2.10
1757 1873 2.089980 GTGCTACTAGTTCCGACCAGA 58.910 52.381 0.00 0.00 0.00 3.86
1794 1910 1.351350 GAAAGTGCCCCTAGTTCCTGT 59.649 52.381 0.00 0.00 0.00 4.00
1800 1916 3.043418 TGCCCCTAGTTCCTGTATAACC 58.957 50.000 0.00 0.00 0.00 2.85
1943 2124 1.720694 CGTGGGGCACAAACGTTCTT 61.721 55.000 0.00 0.00 33.40 2.52
1948 2129 2.324860 GGGCACAAACGTTCTTTATGC 58.675 47.619 0.00 7.40 0.00 3.14
1973 2154 2.770164 TCAGCTAAGTTTCTGAGCCC 57.230 50.000 2.81 0.00 36.87 5.19
1976 2157 2.941720 CAGCTAAGTTTCTGAGCCCATC 59.058 50.000 2.81 0.00 36.87 3.51
1991 2173 2.806434 CCCATCCAAATGTTCCAGTCA 58.194 47.619 0.00 0.00 0.00 3.41
2028 2210 0.181350 CCAGCCTCACCTTATGTCCC 59.819 60.000 0.00 0.00 0.00 4.46
2034 2216 2.623889 CCTCACCTTATGTCCCGAGTAG 59.376 54.545 0.00 0.00 0.00 2.57
2058 2243 4.781934 AGGGCATCCAACTATTCAGTTAC 58.218 43.478 0.00 0.00 43.30 2.50
2059 2244 4.227300 AGGGCATCCAACTATTCAGTTACA 59.773 41.667 0.00 0.00 43.30 2.41
2061 2246 4.576463 GGCATCCAACTATTCAGTTACAGG 59.424 45.833 0.00 0.00 43.30 4.00
2080 2273 3.251245 CAGGCTCATGATCATCTTCTTGC 59.749 47.826 4.86 4.20 0.00 4.01
2112 2305 4.673841 GCCTTTTTGCTGTATTCTCTCTGC 60.674 45.833 0.00 0.00 0.00 4.26
2168 2361 2.562738 CAATTTCTTTCCAGGGGTGGAC 59.437 50.000 0.00 0.00 37.76 4.02
2258 2451 4.637483 TTTTGCTGCCTATGTGCTTATC 57.363 40.909 0.00 0.00 0.00 1.75
2259 2452 3.280197 TTGCTGCCTATGTGCTTATCA 57.720 42.857 0.00 0.00 0.00 2.15
2284 2477 1.201414 GGTGTTTACATGCTTTCCCGG 59.799 52.381 0.00 0.00 0.00 5.73
2349 2543 6.852420 TTACTCCTCTGCAGTATGTACTTT 57.148 37.500 14.67 0.00 39.31 2.66
2358 2552 5.161358 TGCAGTATGTACTTTCAGACTTCG 58.839 41.667 0.00 0.00 37.72 3.79
2371 2565 3.028850 CAGACTTCGAATAGTACCCCCA 58.971 50.000 0.00 0.00 0.00 4.96
2401 2595 1.616994 GCCTACTTGTCATTTGCCCCT 60.617 52.381 0.00 0.00 0.00 4.79
2404 2598 2.610438 ACTTGTCATTTGCCCCTGAT 57.390 45.000 0.00 0.00 0.00 2.90
2427 2621 0.329931 TTTTTCTGCCCGGCCATAGA 59.670 50.000 7.03 0.00 0.00 1.98
2451 2645 0.109342 CACTTGGGCTGTTCTGTCCT 59.891 55.000 2.40 0.00 31.91 3.85
2463 2657 3.244665 TGTTCTGTCCTGAGCACAATCAT 60.245 43.478 0.00 0.00 0.00 2.45
2521 2715 5.769662 AGACAAACACTGCATTCCATTCTAA 59.230 36.000 0.00 0.00 0.00 2.10
2528 2722 4.951715 ACTGCATTCCATTCTAATGAGCAA 59.048 37.500 4.25 0.00 38.70 3.91
2573 2767 6.605194 TCTCTGCTGTATCATGTTCTTCTACT 59.395 38.462 0.00 0.00 0.00 2.57
2742 2937 5.823045 CCCCTAAGATTTGACTAATGACCAC 59.177 44.000 0.00 0.00 0.00 4.16
2755 2950 2.380084 TGACCACGATTAGAAGCACC 57.620 50.000 0.00 0.00 0.00 5.01
2797 2992 5.570320 ACTTACAAATGTACTTCCATGCCT 58.430 37.500 0.00 0.00 0.00 4.75
2918 3116 1.271926 GGTGCCACTGTTAATGGTCCT 60.272 52.381 0.00 0.00 39.63 3.85
2934 3132 9.589461 TTAATGGTCCTAAACAGGTCATTTTTA 57.411 29.630 14.87 0.00 36.35 1.52
3018 3216 9.694137 GACTTCTCAAGTTTAGCCGTTATATAT 57.306 33.333 0.00 0.00 43.03 0.86
3103 3333 7.591006 TGTTTAACAAACATTGCCGTTTTTA 57.409 28.000 0.00 0.00 45.79 1.52
3132 3362 9.850628 CATACTTGATTGAATTTGTCACTGAAT 57.149 29.630 0.00 0.00 35.39 2.57
3140 3370 8.746922 TTGAATTTGTCACTGAATTTAGATGC 57.253 30.769 3.94 0.00 35.39 3.91
3207 3437 6.688666 CATTTGGGGAATGGAAACTTCTGTTT 60.689 38.462 0.00 0.00 41.21 2.83
3236 3466 2.885894 TGATGCTGAAATGCTTGTCACA 59.114 40.909 0.00 0.00 0.00 3.58
3375 3605 9.208022 CTTCTTCTGTTAGTTTATGATGTCACA 57.792 33.333 0.00 0.00 0.00 3.58
3427 3657 4.532834 TGTATGGGCCAAGGAAATAGAAC 58.467 43.478 11.89 0.00 0.00 3.01
3514 3744 9.877137 ATTTTCTTTCGTTTTAAATCAAATGGC 57.123 25.926 0.00 0.00 0.00 4.40
3540 3770 2.483877 TGCTGTGACGATTGTTCCATTC 59.516 45.455 0.00 0.00 0.00 2.67
3550 3780 1.466856 TGTTCCATTCCAGCTCATGC 58.533 50.000 0.00 0.00 40.05 4.06
3670 3900 4.156922 CAGATACTACATGACCCTCCGATC 59.843 50.000 0.00 0.00 0.00 3.69
3683 3913 4.658901 ACCCTCCGATCCATATTACTTGTT 59.341 41.667 0.00 0.00 0.00 2.83
3689 3919 5.527214 CCGATCCATATTACTTGTTGCTCAA 59.473 40.000 0.00 0.00 34.61 3.02
3690 3920 6.038161 CCGATCCATATTACTTGTTGCTCAAA 59.962 38.462 0.00 0.00 35.48 2.69
3691 3921 6.907212 CGATCCATATTACTTGTTGCTCAAAC 59.093 38.462 0.00 0.00 39.41 2.93
3692 3922 6.176975 TCCATATTACTTGTTGCTCAAACG 57.823 37.500 0.00 0.00 42.10 3.60
3693 3923 5.123186 TCCATATTACTTGTTGCTCAAACGG 59.877 40.000 0.00 0.00 42.10 4.44
3694 3924 5.123186 CCATATTACTTGTTGCTCAAACGGA 59.877 40.000 0.00 0.00 42.10 4.69
3695 3925 6.183360 CCATATTACTTGTTGCTCAAACGGAT 60.183 38.462 0.00 0.00 42.10 4.18
3696 3926 4.481930 TTACTTGTTGCTCAAACGGATG 57.518 40.909 0.00 0.00 42.10 3.51
3697 3927 2.297701 ACTTGTTGCTCAAACGGATGT 58.702 42.857 0.00 0.00 42.10 3.06
3698 3928 3.472652 ACTTGTTGCTCAAACGGATGTA 58.527 40.909 0.00 0.00 42.10 2.29
3699 3929 4.072131 ACTTGTTGCTCAAACGGATGTAT 58.928 39.130 0.00 0.00 42.10 2.29
3700 3930 4.154195 ACTTGTTGCTCAAACGGATGTATC 59.846 41.667 0.00 0.00 42.10 2.24
3701 3931 3.937814 TGTTGCTCAAACGGATGTATCT 58.062 40.909 0.00 0.00 42.10 1.98
3702 3932 5.079689 TGTTGCTCAAACGGATGTATCTA 57.920 39.130 0.00 0.00 42.10 1.98
3703 3933 5.109210 TGTTGCTCAAACGGATGTATCTAG 58.891 41.667 0.00 0.00 42.10 2.43
3704 3934 3.717707 TGCTCAAACGGATGTATCTAGC 58.282 45.455 0.00 0.00 0.00 3.42
3705 3935 2.726760 GCTCAAACGGATGTATCTAGCG 59.273 50.000 0.00 0.00 0.00 4.26
3706 3936 2.726760 CTCAAACGGATGTATCTAGCGC 59.273 50.000 0.00 0.00 0.00 5.92
3707 3937 2.361119 TCAAACGGATGTATCTAGCGCT 59.639 45.455 17.26 17.26 0.00 5.92
3708 3938 2.708386 AACGGATGTATCTAGCGCTC 57.292 50.000 16.34 0.00 0.00 5.03
3709 3939 1.605753 ACGGATGTATCTAGCGCTCA 58.394 50.000 16.34 5.47 0.00 4.26
3727 3957 4.618912 CGCTCAAACGGATGTATCTAGATG 59.381 45.833 15.79 0.00 0.00 2.90
3750 3980 6.447162 TGTATTTCAGTGCTAGATACATCCG 58.553 40.000 0.00 0.00 30.60 4.18
3811 4041 8.970859 ATAGAATGGGTGAAGAGAAGTAATTG 57.029 34.615 0.00 0.00 0.00 2.32
3848 4078 8.172352 TGAGATCGATTACCCAAAAAGAAAAA 57.828 30.769 0.00 0.00 0.00 1.94
3916 4418 6.096673 TGCAAGATGAAGTAACACTACTGA 57.903 37.500 0.00 0.00 38.43 3.41
4067 4569 5.360714 TGGAGAAATGTTTTGAAGAGCTTGT 59.639 36.000 0.00 0.00 0.00 3.16
4083 4585 2.225727 GCTTGTGCTAAAGGTACACACC 59.774 50.000 0.00 0.00 43.57 4.16
4084 4586 4.055214 GCTTGTGCTAAAGGTACACACCT 61.055 47.826 0.00 0.00 46.23 4.00
4134 4636 7.340999 ACCTTAACCTCTTTACTTTTTGAGCAA 59.659 33.333 0.00 0.00 0.00 3.91
4170 4672 7.944729 AACTTGTAAAGGTATGCATCATTCT 57.055 32.000 0.19 0.00 46.27 2.40
4175 4677 2.216046 AGGTATGCATCATTCTGTGCG 58.784 47.619 0.19 0.00 44.11 5.34
4199 4701 7.218204 GCGGTAGCATCATTAAAGTTAAAAGTG 59.782 37.037 0.00 0.00 44.35 3.16
4306 4809 1.542915 CTGGCAGTGAACATTCCCTTG 59.457 52.381 6.28 0.00 0.00 3.61
4360 4863 5.449588 CCCATCTTATTACAAAGCACAGCTG 60.450 44.000 13.48 13.48 39.62 4.24
4365 4868 2.462456 TACAAAGCACAGCTGGAGAG 57.538 50.000 19.93 6.02 39.62 3.20
4380 4883 4.739137 GCTGGAGAGAGTATAGGCTTGTTG 60.739 50.000 0.00 0.00 0.00 3.33
4395 4898 5.653769 AGGCTTGTTGCAATGATATAACTGT 59.346 36.000 0.59 0.00 45.15 3.55
4452 4958 8.019669 CGTGAATCTTGAATTTGTCTTTCAGAT 58.980 33.333 0.00 0.00 34.76 2.90
4461 4967 9.342308 TGAATTTGTCTTTCAGATATGTATCCC 57.658 33.333 0.00 0.00 33.17 3.85
4462 4968 9.566432 GAATTTGTCTTTCAGATATGTATCCCT 57.434 33.333 0.00 0.00 33.17 4.20
4482 4988 4.480541 CCTAATTGTTTGTTGCGCATACA 58.519 39.130 12.75 15.90 37.28 2.29
4499 5005 8.296000 TGCGCATACATTTTATTGTATATGCTT 58.704 29.630 5.66 0.00 40.07 3.91
4531 5037 8.239314 AGTAATCAATTTATGTTGTGCTGTCAG 58.761 33.333 0.00 0.00 0.00 3.51
4544 5050 1.354040 CTGTCAGCCATCAGTTCGTC 58.646 55.000 0.00 0.00 0.00 4.20
4549 5055 2.146342 CAGCCATCAGTTCGTCAAGTT 58.854 47.619 0.00 0.00 0.00 2.66
4556 5062 5.007039 CCATCAGTTCGTCAAGTTCCATATG 59.993 44.000 0.00 0.00 0.00 1.78
4560 5066 6.152154 TCAGTTCGTCAAGTTCCATATGACTA 59.848 38.462 3.65 0.00 40.95 2.59
4591 5097 3.075148 GACTTGAGAACAGCCCCTTTAC 58.925 50.000 0.00 0.00 0.00 2.01
4602 5108 2.105993 AGCCCCTTTACGTCTTTGAACT 59.894 45.455 0.00 0.00 0.00 3.01
4610 5116 8.440833 CCCTTTACGTCTTTGAACTTGTATTAG 58.559 37.037 0.00 0.00 0.00 1.73
4643 5149 9.301153 GTCAACAGATTTACAATTTTTGTGAGT 57.699 29.630 3.22 0.00 45.03 3.41
4666 5172 9.685828 GAGTAAGTAGGAAAGCAGTTATAGATG 57.314 37.037 0.00 0.00 0.00 2.90
4707 5412 2.467880 AGCTTTCTCTTCCCATACCGA 58.532 47.619 0.00 0.00 0.00 4.69
4760 5465 1.838077 GGGAAGGGCAAGCTAGTCTTA 59.162 52.381 0.00 0.00 32.74 2.10
4768 5473 3.339141 GCAAGCTAGTCTTAAGGCTGTT 58.661 45.455 19.92 7.50 35.08 3.16
4827 5551 8.462016 AGCCAATTGTCTATTTTGTCAGATAAC 58.538 33.333 4.43 0.00 0.00 1.89
4841 5565 5.874810 TGTCAGATAACTAACTTGATGCACC 59.125 40.000 0.00 0.00 0.00 5.01
5009 5996 2.359981 ATTCATCCAGCTCCATGTGG 57.640 50.000 0.00 0.00 34.87 4.17
5121 6111 2.178325 TCTTATATGTGGGACGGAGGGA 59.822 50.000 0.00 0.00 0.00 4.20
5126 6116 0.613853 TGTGGGACGGAGGGAGTAAG 60.614 60.000 0.00 0.00 0.00 2.34
5443 6734 1.597461 GGGGGTGCTGTCAGTAGAC 59.403 63.158 0.93 0.00 45.19 2.59
5553 6844 1.148157 CTAAGTGCTCATCGGTGCGG 61.148 60.000 0.00 0.00 36.33 5.69
5562 6853 3.038945 ATCGGTGCGGGTAAAGGGG 62.039 63.158 0.00 0.00 0.00 4.79
5585 6876 6.041637 GGGAGGAATAACAACTTGAGGTTTTT 59.958 38.462 0.00 0.00 35.74 1.94
5609 6900 0.035056 GTGTGATGAGAAGGGTGGGG 60.035 60.000 0.00 0.00 0.00 4.96
5630 6926 4.941873 GGGGATTAGTTGACCTGTACAAAG 59.058 45.833 0.00 0.00 0.00 2.77
5650 6947 4.802876 AGAGAAAAGAAGACGCTGTTTG 57.197 40.909 0.00 0.00 0.00 2.93
5691 6988 4.142381 GGTTTGCTGATTGTAATGAGGTCC 60.142 45.833 0.00 0.00 0.00 4.46
5692 6989 3.281727 TGCTGATTGTAATGAGGTCCC 57.718 47.619 0.00 0.00 0.00 4.46
5723 7020 1.884926 GCTGATCCGCTTCCTTCCG 60.885 63.158 1.31 0.00 0.00 4.30
5864 7166 7.121168 TGTGGAATTTTCATCTGTTATCCTGTC 59.879 37.037 0.00 0.00 0.00 3.51
5889 7191 1.811965 CCATTTCATCGTGTCTTGCCA 59.188 47.619 0.00 0.00 0.00 4.92
5892 7194 0.804364 TTCATCGTGTCTTGCCATGC 59.196 50.000 0.00 0.00 0.00 4.06
5912 7214 2.286872 CCACAGCTTTATGAGGAGCAG 58.713 52.381 0.00 0.00 41.31 4.24
5949 7272 3.000674 GCGACTGTACTGAATCAATCACG 60.001 47.826 6.77 0.00 33.47 4.35
5955 7278 2.143122 ACTGAATCAATCACGTGCGTT 58.857 42.857 11.67 5.39 33.47 4.84
5962 7285 1.078709 AATCACGTGCGTTCATCCAG 58.921 50.000 11.67 0.00 0.00 3.86
5976 7299 4.248691 TCATCCAGCTCTTGTATCGATG 57.751 45.455 8.54 0.00 0.00 3.84
6043 7383 3.059800 CAGATGCTCACATGATAACTGCG 60.060 47.826 0.00 0.00 36.35 5.18
6078 7418 2.742738 GCATTGTGCAATTGCCGGC 61.743 57.895 26.94 22.73 44.26 6.13
6246 7595 0.842635 GGACCAGCTCCATCAGGATT 59.157 55.000 0.00 0.00 44.70 3.01
6286 7635 5.604758 ACAGTGTATGTGCATCTCACTAT 57.395 39.130 16.34 8.18 45.81 2.12
6291 7640 9.696917 CAGTGTATGTGCATCTCACTATATTAA 57.303 33.333 16.34 0.00 45.81 1.40
6317 7667 2.425143 TAGTACGGAGTGGTACCCAG 57.575 55.000 10.07 0.00 45.73 4.45
6329 7679 3.657448 TACCCAGCGTGCGGTCATG 62.657 63.158 0.00 0.00 33.36 3.07
6347 7697 6.038825 CGGTCATGATCAGTACTCTTAAGACT 59.961 42.308 6.80 0.00 0.00 3.24
6348 7698 7.199766 GGTCATGATCAGTACTCTTAAGACTG 58.800 42.308 13.91 13.91 41.62 3.51
6349 7699 7.147983 GGTCATGATCAGTACTCTTAAGACTGT 60.148 40.741 17.63 11.19 41.14 3.55
6362 7712 6.321717 TCTTAAGACTGTTGTTGCACAAAAG 58.678 36.000 14.13 14.13 46.39 2.27
6409 7759 1.367840 GGCCAGTTCACGTGAGACT 59.632 57.895 19.11 19.98 0.00 3.24
6410 7760 0.601558 GGCCAGTTCACGTGAGACTA 59.398 55.000 23.61 8.06 0.00 2.59
6411 7761 1.204941 GGCCAGTTCACGTGAGACTAT 59.795 52.381 23.61 8.14 0.00 2.12
6412 7762 2.426024 GGCCAGTTCACGTGAGACTATA 59.574 50.000 23.61 7.08 0.00 1.31
6413 7763 3.436496 GCCAGTTCACGTGAGACTATAC 58.564 50.000 23.61 16.80 0.00 1.47
6414 7764 3.734293 GCCAGTTCACGTGAGACTATACC 60.734 52.174 23.61 13.47 0.00 2.73
6415 7765 3.695060 CCAGTTCACGTGAGACTATACCT 59.305 47.826 23.61 9.06 0.00 3.08
6416 7766 4.438880 CCAGTTCACGTGAGACTATACCTG 60.439 50.000 23.61 16.85 0.00 4.00
6417 7767 3.695060 AGTTCACGTGAGACTATACCTGG 59.305 47.826 23.13 0.00 0.00 4.45
6418 7768 2.651455 TCACGTGAGACTATACCTGGG 58.349 52.381 15.76 0.00 0.00 4.45
6419 7769 1.067212 CACGTGAGACTATACCTGGGC 59.933 57.143 10.90 0.00 0.00 5.36
6420 7770 1.341679 ACGTGAGACTATACCTGGGCA 60.342 52.381 0.00 0.00 0.00 5.36
6421 7771 1.964223 CGTGAGACTATACCTGGGCAT 59.036 52.381 0.00 0.00 0.00 4.40
6422 7772 2.029828 CGTGAGACTATACCTGGGCATC 60.030 54.545 0.00 0.00 0.00 3.91
6423 7773 3.235200 GTGAGACTATACCTGGGCATCT 58.765 50.000 0.00 0.00 0.00 2.90
6424 7774 3.006323 GTGAGACTATACCTGGGCATCTG 59.994 52.174 0.00 0.00 0.00 2.90
6425 7775 3.235200 GAGACTATACCTGGGCATCTGT 58.765 50.000 0.00 0.00 0.00 3.41
6426 7776 3.235200 AGACTATACCTGGGCATCTGTC 58.765 50.000 0.00 4.10 0.00 3.51
6427 7777 1.964223 ACTATACCTGGGCATCTGTCG 59.036 52.381 0.00 0.00 0.00 4.35
6428 7778 1.273606 CTATACCTGGGCATCTGTCGG 59.726 57.143 0.00 0.00 0.00 4.79
6429 7779 2.044806 ATACCTGGGCATCTGTCGGC 62.045 60.000 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.665442 GTCCGCCCAGTTTTGCATT 59.335 52.632 0.00 0.00 0.00 3.56
1 2 2.625823 CGTCCGCCCAGTTTTGCAT 61.626 57.895 0.00 0.00 0.00 3.96
3 4 4.700365 GCGTCCGCCCAGTTTTGC 62.700 66.667 0.00 0.00 34.56 3.68
26 27 3.708734 CGTTTGTGTCGGTCGCCC 61.709 66.667 0.00 0.00 0.00 6.13
27 28 3.708734 CCGTTTGTGTCGGTCGCC 61.709 66.667 0.00 0.00 42.62 5.54
28 29 2.659244 TCCGTTTGTGTCGGTCGC 60.659 61.111 4.36 0.00 46.86 5.19
29 30 1.146957 TTGTCCGTTTGTGTCGGTCG 61.147 55.000 4.36 0.00 46.86 4.79
30 31 1.008329 TTTGTCCGTTTGTGTCGGTC 58.992 50.000 4.36 0.00 46.86 4.79
31 32 1.451067 TTTTGTCCGTTTGTGTCGGT 58.549 45.000 4.36 0.00 46.86 4.69
33 34 2.096174 TCCTTTTTGTCCGTTTGTGTCG 59.904 45.455 0.00 0.00 0.00 4.35
34 35 3.768468 TCCTTTTTGTCCGTTTGTGTC 57.232 42.857 0.00 0.00 0.00 3.67
35 36 3.256136 TGTTCCTTTTTGTCCGTTTGTGT 59.744 39.130 0.00 0.00 0.00 3.72
36 37 3.839293 TGTTCCTTTTTGTCCGTTTGTG 58.161 40.909 0.00 0.00 0.00 3.33
37 38 4.522722 TTGTTCCTTTTTGTCCGTTTGT 57.477 36.364 0.00 0.00 0.00 2.83
38 39 5.726413 GCATTTGTTCCTTTTTGTCCGTTTG 60.726 40.000 0.00 0.00 0.00 2.93
39 40 4.331443 GCATTTGTTCCTTTTTGTCCGTTT 59.669 37.500 0.00 0.00 0.00 3.60
40 41 3.868661 GCATTTGTTCCTTTTTGTCCGTT 59.131 39.130 0.00 0.00 0.00 4.44
41 42 3.453424 GCATTTGTTCCTTTTTGTCCGT 58.547 40.909 0.00 0.00 0.00 4.69
42 43 2.470999 CGCATTTGTTCCTTTTTGTCCG 59.529 45.455 0.00 0.00 0.00 4.79
43 44 2.220824 GCGCATTTGTTCCTTTTTGTCC 59.779 45.455 0.30 0.00 0.00 4.02
44 45 2.220824 GGCGCATTTGTTCCTTTTTGTC 59.779 45.455 10.83 0.00 0.00 3.18
45 46 2.209273 GGCGCATTTGTTCCTTTTTGT 58.791 42.857 10.83 0.00 0.00 2.83
46 47 1.192090 CGGCGCATTTGTTCCTTTTTG 59.808 47.619 10.83 0.00 0.00 2.44
47 48 1.202475 ACGGCGCATTTGTTCCTTTTT 60.202 42.857 10.83 0.00 0.00 1.94
48 49 0.387565 ACGGCGCATTTGTTCCTTTT 59.612 45.000 10.83 0.00 0.00 2.27
49 50 0.039527 GACGGCGCATTTGTTCCTTT 60.040 50.000 10.83 0.00 0.00 3.11
50 51 1.579429 GACGGCGCATTTGTTCCTT 59.421 52.632 10.83 0.00 0.00 3.36
51 52 2.332654 GGACGGCGCATTTGTTCCT 61.333 57.895 10.83 0.00 0.00 3.36
52 53 2.178273 GGACGGCGCATTTGTTCC 59.822 61.111 10.83 0.00 0.00 3.62
53 54 2.202298 CGGACGGCGCATTTGTTC 60.202 61.111 10.83 0.00 0.00 3.18
54 55 2.065906 AAACGGACGGCGCATTTGTT 62.066 50.000 10.83 3.94 0.00 2.83
55 56 2.548295 AAACGGACGGCGCATTTGT 61.548 52.632 10.83 0.74 0.00 2.83
56 57 2.080062 CAAACGGACGGCGCATTTG 61.080 57.895 10.83 9.01 0.00 2.32
57 58 2.254051 CAAACGGACGGCGCATTT 59.746 55.556 10.83 0.00 0.00 2.32
58 59 3.732892 CCAAACGGACGGCGCATT 61.733 61.111 10.83 0.00 0.00 3.56
76 77 0.885196 TAAAACTGCAATGGGGCGAC 59.115 50.000 0.00 0.00 36.28 5.19
77 78 0.885196 GTAAAACTGCAATGGGGCGA 59.115 50.000 0.00 0.00 36.28 5.54
78 79 0.455972 CGTAAAACTGCAATGGGGCG 60.456 55.000 0.00 0.00 36.28 6.13
79 80 0.108851 CCGTAAAACTGCAATGGGGC 60.109 55.000 0.00 0.00 0.00 5.80
80 81 1.253100 ACCGTAAAACTGCAATGGGG 58.747 50.000 0.00 0.00 0.00 4.96
81 82 3.253677 TGTAACCGTAAAACTGCAATGGG 59.746 43.478 0.00 0.00 0.00 4.00
82 83 4.223659 GTGTAACCGTAAAACTGCAATGG 58.776 43.478 0.00 0.00 0.00 3.16
83 84 3.903644 CGTGTAACCGTAAAACTGCAATG 59.096 43.478 0.00 0.00 0.00 2.82
84 85 3.607542 GCGTGTAACCGTAAAACTGCAAT 60.608 43.478 0.00 0.00 0.00 3.56
85 86 2.286301 GCGTGTAACCGTAAAACTGCAA 60.286 45.455 0.00 0.00 0.00 4.08
86 87 1.261089 GCGTGTAACCGTAAAACTGCA 59.739 47.619 0.00 0.00 0.00 4.41
87 88 1.528161 AGCGTGTAACCGTAAAACTGC 59.472 47.619 0.00 0.00 0.00 4.40
88 89 3.865224 AAGCGTGTAACCGTAAAACTG 57.135 42.857 0.00 0.00 0.00 3.16
89 90 4.870363 TCTAAGCGTGTAACCGTAAAACT 58.130 39.130 0.00 0.00 0.00 2.66
90 91 4.681483 ACTCTAAGCGTGTAACCGTAAAAC 59.319 41.667 0.00 0.00 0.00 2.43
91 92 4.870363 ACTCTAAGCGTGTAACCGTAAAA 58.130 39.130 0.00 0.00 0.00 1.52
92 93 4.503741 ACTCTAAGCGTGTAACCGTAAA 57.496 40.909 0.00 0.00 0.00 2.01
93 94 4.475944 GAACTCTAAGCGTGTAACCGTAA 58.524 43.478 0.00 0.00 0.00 3.18
94 95 3.119849 GGAACTCTAAGCGTGTAACCGTA 60.120 47.826 0.00 0.00 0.00 4.02
95 96 2.352127 GGAACTCTAAGCGTGTAACCGT 60.352 50.000 0.00 0.00 0.00 4.83
96 97 2.257034 GGAACTCTAAGCGTGTAACCG 58.743 52.381 0.00 0.00 0.00 4.44
97 98 3.057033 TCTGGAACTCTAAGCGTGTAACC 60.057 47.826 0.00 0.00 0.00 2.85
98 99 4.170292 TCTGGAACTCTAAGCGTGTAAC 57.830 45.455 0.00 0.00 0.00 2.50
119 122 4.959446 GCGTAGGTCGTGACAGTT 57.041 55.556 2.00 0.00 42.13 3.16
276 303 2.436824 GCGCTGTCCCTTCCTTCC 60.437 66.667 0.00 0.00 0.00 3.46
277 304 2.815647 CGCGCTGTCCCTTCCTTC 60.816 66.667 5.56 0.00 0.00 3.46
278 305 4.394712 CCGCGCTGTCCCTTCCTT 62.395 66.667 5.56 0.00 0.00 3.36
332 359 4.825679 GGTGGAGGGGAGGGGGAG 62.826 77.778 0.00 0.00 0.00 4.30
493 525 3.742248 GACGGGAGAGGGAGGAGGG 62.742 73.684 0.00 0.00 0.00 4.30
507 539 1.296727 GGAGGGAATAAAAGCGACGG 58.703 55.000 0.00 0.00 0.00 4.79
509 541 1.676746 GGGGAGGGAATAAAAGCGAC 58.323 55.000 0.00 0.00 0.00 5.19
510 542 0.549469 GGGGGAGGGAATAAAAGCGA 59.451 55.000 0.00 0.00 0.00 4.93
511 543 0.551396 AGGGGGAGGGAATAAAAGCG 59.449 55.000 0.00 0.00 0.00 4.68
1144 1177 1.990614 GGGAGGGAGGTGAGGTGAC 60.991 68.421 0.00 0.00 0.00 3.67
1146 1179 1.687493 GAGGGAGGGAGGTGAGGTG 60.687 68.421 0.00 0.00 0.00 4.00
1181 1227 4.697756 TCCAAGTCGGGGCAAGCG 62.698 66.667 0.00 0.00 34.36 4.68
1201 1271 3.823304 GAGACAGGATGGATTTATTGCCC 59.177 47.826 0.00 0.00 43.62 5.36
1202 1272 3.823304 GGAGACAGGATGGATTTATTGCC 59.177 47.826 0.00 0.00 43.62 4.52
1284 1364 8.905660 AATCTGATGGTATGAATGAAGAGAAG 57.094 34.615 0.00 0.00 0.00 2.85
1287 1367 7.440556 ACGAAATCTGATGGTATGAATGAAGAG 59.559 37.037 0.00 0.00 0.00 2.85
1288 1368 7.275183 ACGAAATCTGATGGTATGAATGAAGA 58.725 34.615 0.00 0.00 0.00 2.87
1289 1369 7.488187 ACGAAATCTGATGGTATGAATGAAG 57.512 36.000 0.00 0.00 0.00 3.02
1294 1374 4.033932 CGCAACGAAATCTGATGGTATGAA 59.966 41.667 0.00 0.00 0.00 2.57
1346 1426 8.647796 CCCCAACAACTATCATCTAGTAATACA 58.352 37.037 0.00 0.00 0.00 2.29
1350 1433 6.206787 TCCCCCAACAACTATCATCTAGTAA 58.793 40.000 0.00 0.00 0.00 2.24
1352 1435 4.631234 TCCCCCAACAACTATCATCTAGT 58.369 43.478 0.00 0.00 0.00 2.57
1375 1458 2.496899 TCCCTCCTCAATTGAACTGC 57.503 50.000 9.88 0.00 0.00 4.40
1386 1469 1.340114 GGTGTTGGTTGATCCCTCCTC 60.340 57.143 0.00 0.00 34.77 3.71
1387 1470 0.698818 GGTGTTGGTTGATCCCTCCT 59.301 55.000 0.00 0.00 34.77 3.69
1388 1471 0.676782 CGGTGTTGGTTGATCCCTCC 60.677 60.000 0.00 0.00 34.77 4.30
1389 1472 0.676782 CCGGTGTTGGTTGATCCCTC 60.677 60.000 0.00 0.00 34.77 4.30
1408 1496 0.592247 CGTTCCGCAAATAGGCATGC 60.592 55.000 9.90 9.90 39.17 4.06
1517 1616 3.262420 GCTGAAATAAGCGAGGAAGTGA 58.738 45.455 0.00 0.00 32.56 3.41
1563 1663 2.825532 GTGTGGCACTTATCATTTGGGT 59.174 45.455 19.83 0.00 0.00 4.51
1564 1664 2.159393 CGTGTGGCACTTATCATTTGGG 60.159 50.000 19.83 0.00 31.34 4.12
1565 1665 2.487762 ACGTGTGGCACTTATCATTTGG 59.512 45.455 19.83 0.00 31.34 3.28
1566 1666 3.829886 ACGTGTGGCACTTATCATTTG 57.170 42.857 19.83 0.77 31.34 2.32
1567 1667 4.545610 CAAACGTGTGGCACTTATCATTT 58.454 39.130 19.83 7.91 31.34 2.32
1568 1668 3.611530 GCAAACGTGTGGCACTTATCATT 60.612 43.478 19.83 3.88 31.34 2.57
1569 1669 2.095263 GCAAACGTGTGGCACTTATCAT 60.095 45.455 19.83 0.00 31.34 2.45
1570 1670 1.265635 GCAAACGTGTGGCACTTATCA 59.734 47.619 19.83 0.00 31.34 2.15
1571 1671 1.535462 AGCAAACGTGTGGCACTTATC 59.465 47.619 19.83 5.98 31.34 1.75
1572 1672 1.604604 AGCAAACGTGTGGCACTTAT 58.395 45.000 19.83 0.42 31.34 1.73
1573 1673 1.384525 AAGCAAACGTGTGGCACTTA 58.615 45.000 19.83 0.00 31.34 2.24
1574 1674 1.384525 TAAGCAAACGTGTGGCACTT 58.615 45.000 19.83 5.16 31.34 3.16
1575 1675 1.604604 ATAAGCAAACGTGTGGCACT 58.395 45.000 19.83 0.00 31.34 4.40
1576 1676 2.415697 AATAAGCAAACGTGTGGCAC 57.584 45.000 11.55 11.55 0.00 5.01
1577 1677 4.569761 TTAAATAAGCAAACGTGTGGCA 57.430 36.364 8.05 0.00 0.00 4.92
1578 1678 4.384547 CCTTTAAATAAGCAAACGTGTGGC 59.615 41.667 8.05 2.88 0.00 5.01
1579 1679 5.764131 TCCTTTAAATAAGCAAACGTGTGG 58.236 37.500 8.05 0.00 0.00 4.17
1580 1680 7.061789 GGATTCCTTTAAATAAGCAAACGTGTG 59.938 37.037 0.00 0.00 0.00 3.82
1581 1681 7.039993 AGGATTCCTTTAAATAAGCAAACGTGT 60.040 33.333 0.00 0.00 0.00 4.49
1582 1682 7.273381 CAGGATTCCTTTAAATAAGCAAACGTG 59.727 37.037 1.28 0.00 0.00 4.49
1583 1683 7.175990 TCAGGATTCCTTTAAATAAGCAAACGT 59.824 33.333 1.28 0.00 0.00 3.99
1584 1684 7.535139 TCAGGATTCCTTTAAATAAGCAAACG 58.465 34.615 1.28 0.00 0.00 3.60
1585 1685 7.489435 GCTCAGGATTCCTTTAAATAAGCAAAC 59.511 37.037 1.28 0.00 0.00 2.93
1586 1686 7.363793 GGCTCAGGATTCCTTTAAATAAGCAAA 60.364 37.037 1.28 0.00 0.00 3.68
1587 1687 6.096846 GGCTCAGGATTCCTTTAAATAAGCAA 59.903 38.462 1.28 0.00 0.00 3.91
1588 1688 5.594317 GGCTCAGGATTCCTTTAAATAAGCA 59.406 40.000 1.28 0.00 0.00 3.91
1589 1689 5.594317 TGGCTCAGGATTCCTTTAAATAAGC 59.406 40.000 1.28 3.99 0.00 3.09
1590 1690 7.201857 CCTTGGCTCAGGATTCCTTTAAATAAG 60.202 40.741 1.28 4.32 35.71 1.73
1591 1691 6.607198 CCTTGGCTCAGGATTCCTTTAAATAA 59.393 38.462 1.28 0.00 35.71 1.40
1592 1692 6.069088 TCCTTGGCTCAGGATTCCTTTAAATA 60.069 38.462 1.28 0.00 38.11 1.40
1593 1693 4.958581 CCTTGGCTCAGGATTCCTTTAAAT 59.041 41.667 1.28 0.00 35.71 1.40
1594 1694 4.044065 TCCTTGGCTCAGGATTCCTTTAAA 59.956 41.667 1.28 0.00 38.11 1.52
1595 1695 3.591527 TCCTTGGCTCAGGATTCCTTTAA 59.408 43.478 1.28 0.00 38.11 1.52
1596 1696 3.189606 TCCTTGGCTCAGGATTCCTTTA 58.810 45.455 1.28 0.00 38.11 1.85
1606 1706 3.508793 ACAAACATTCATCCTTGGCTCAG 59.491 43.478 0.00 0.00 0.00 3.35
1678 1782 1.043816 ACCTGATGCATCCTAGACCG 58.956 55.000 23.67 5.86 0.00 4.79
1679 1783 2.843701 CAACCTGATGCATCCTAGACC 58.156 52.381 23.67 0.00 0.00 3.85
1710 1814 9.981114 CCAGAAATTTTGTCCTAGTGTTTTAAT 57.019 29.630 0.00 0.00 0.00 1.40
1757 1873 4.872691 CACTTTCAGTGTTCTCTCTTGTGT 59.127 41.667 0.00 0.00 41.19 3.72
1794 1910 7.771826 GGGTAAATCTGTTTGCTAGTGGTTATA 59.228 37.037 0.00 0.00 31.53 0.98
1800 1916 5.245531 TGAGGGTAAATCTGTTTGCTAGTG 58.754 41.667 0.00 0.00 31.53 2.74
1886 2067 6.897259 CAATTGCATTTGGATCGAGAAAAT 57.103 33.333 12.51 0.00 0.00 1.82
1943 2124 6.712095 CAGAAACTTAGCTGATATGGGCATAA 59.288 38.462 0.00 0.00 34.06 1.90
1948 2129 4.754114 GCTCAGAAACTTAGCTGATATGGG 59.246 45.833 0.00 0.00 40.11 4.00
1973 2154 6.375174 TGTTAGATGACTGGAACATTTGGATG 59.625 38.462 0.00 0.00 38.20 3.51
1976 2157 5.392380 GCTGTTAGATGACTGGAACATTTGG 60.392 44.000 0.00 0.00 38.20 3.28
2028 2210 0.105039 GTTGGATGCCCTCCTACTCG 59.895 60.000 8.94 0.00 43.85 4.18
2034 2216 2.173569 ACTGAATAGTTGGATGCCCTCC 59.826 50.000 0.00 0.00 45.19 4.30
2058 2243 3.251245 GCAAGAAGATGATCATGAGCCTG 59.749 47.826 14.30 6.16 0.00 4.85
2059 2244 3.118000 TGCAAGAAGATGATCATGAGCCT 60.118 43.478 14.30 0.30 0.00 4.58
2061 2246 6.205076 ACTTATGCAAGAAGATGATCATGAGC 59.795 38.462 14.30 3.40 35.60 4.26
2080 2273 3.981211 ACAGCAAAAAGGCACACTTATG 58.019 40.909 0.00 0.00 38.85 1.90
2168 2361 9.023967 CCAACAGTGAGAAACTTGATTTTAAAG 57.976 33.333 0.00 0.00 36.83 1.85
2250 2443 7.379529 GCATGTAAACACCATATTGATAAGCAC 59.620 37.037 0.00 0.00 0.00 4.40
2258 2451 6.042143 GGGAAAGCATGTAAACACCATATTG 58.958 40.000 0.00 0.00 0.00 1.90
2259 2452 5.163561 CGGGAAAGCATGTAAACACCATATT 60.164 40.000 0.00 0.00 0.00 1.28
2316 2509 1.284785 CAGAGGAGTAATTGCCCCCAA 59.715 52.381 5.60 0.00 35.01 4.12
2349 2543 3.294214 GGGGGTACTATTCGAAGTCTGA 58.706 50.000 3.35 0.00 0.00 3.27
2358 2552 5.237996 GCTCGTAATTTTGGGGGTACTATTC 59.762 44.000 0.00 0.00 0.00 1.75
2371 2565 7.305474 CAAATGACAAGTAGGCTCGTAATTTT 58.695 34.615 0.00 0.00 0.00 1.82
2427 2621 2.040813 ACAGAACAGCCCAAGTGATGAT 59.959 45.455 0.00 0.00 0.00 2.45
2451 2645 7.435192 CGTTGTATAGTAAGATGATTGTGCTCA 59.565 37.037 0.00 0.00 0.00 4.26
2483 2677 9.937175 GCAGTGTTTGTCTAGAATATATTTTCC 57.063 33.333 0.00 0.00 0.00 3.13
2492 2686 5.316167 TGGAATGCAGTGTTTGTCTAGAAT 58.684 37.500 0.00 0.00 0.00 2.40
2500 2694 6.623486 TCATTAGAATGGAATGCAGTGTTTG 58.377 36.000 0.00 0.00 37.03 2.93
2521 2715 9.618890 AGTATTGTACAGAAATACATTGCTCAT 57.381 29.630 15.29 0.00 41.13 2.90
2528 2722 9.319143 GCAGAGAAGTATTGTACAGAAATACAT 57.681 33.333 15.29 6.36 41.13 2.29
2573 2767 8.319057 AGGAACACCATTAGATACAATAGACA 57.681 34.615 0.00 0.00 0.00 3.41
2719 2914 5.523916 CGTGGTCATTAGTCAAATCTTAGGG 59.476 44.000 0.00 0.00 0.00 3.53
2732 2927 4.508124 GGTGCTTCTAATCGTGGTCATTAG 59.492 45.833 0.00 0.00 35.81 1.73
2742 2937 4.701956 AAATGGTTGGTGCTTCTAATCG 57.298 40.909 0.00 0.00 0.00 3.34
2755 2950 4.589216 AGTCACACATGGAAAATGGTTG 57.411 40.909 0.00 0.00 0.00 3.77
2878 3076 2.606308 CCAGAGTTGAGCATGCACAAAC 60.606 50.000 28.39 23.56 0.00 2.93
2934 3132 6.259608 GCATCTTGCTCGGCTTATATGAATAT 59.740 38.462 0.00 0.00 40.96 1.28
3018 3216 6.943146 TGGAATGGTTACAACTAACAAGCATA 59.057 34.615 0.00 0.00 38.92 3.14
3103 3333 8.509690 CAGTGACAAATTCAATCAAGTATGACT 58.490 33.333 0.00 0.00 38.69 3.41
3132 3362 5.894298 ATCATAGTGAGGTGGCATCTAAA 57.106 39.130 0.00 0.00 0.00 1.85
3140 3370 6.419484 TGGTACATTATCATAGTGAGGTGG 57.581 41.667 0.00 0.00 0.00 4.61
3207 3437 6.825213 ACAAGCATTTCAGCATCACTAATCTA 59.175 34.615 0.00 0.00 36.85 1.98
3279 3509 5.801947 CACCTTCCGCAGAATAAAATGAAAG 59.198 40.000 0.00 0.00 0.00 2.62
3375 3605 7.148423 GCCAAATTTGTGAAACTTTGTCTCTTT 60.148 33.333 16.73 0.00 38.04 2.52
3427 3657 4.100529 CACTCTTTGTTTGTTGAGTGCAG 58.899 43.478 8.68 0.00 46.09 4.41
3514 3744 3.123621 GGAACAATCGTCACAGCAAGTAG 59.876 47.826 0.00 0.00 0.00 2.57
3670 3900 5.123186 TCCGTTTGAGCAACAAGTAATATGG 59.877 40.000 0.00 0.00 39.77 2.74
3683 3913 3.717707 GCTAGATACATCCGTTTGAGCA 58.282 45.455 0.00 0.00 0.00 4.26
3689 3919 1.954382 TGAGCGCTAGATACATCCGTT 59.046 47.619 11.50 0.00 0.00 4.44
3690 3920 1.605753 TGAGCGCTAGATACATCCGT 58.394 50.000 11.50 0.00 0.00 4.69
3691 3921 2.706555 TTGAGCGCTAGATACATCCG 57.293 50.000 11.50 0.00 0.00 4.18
3692 3922 2.726760 CGTTTGAGCGCTAGATACATCC 59.273 50.000 11.50 0.00 0.00 3.51
3693 3923 2.726760 CCGTTTGAGCGCTAGATACATC 59.273 50.000 11.50 0.00 0.00 3.06
3694 3924 2.361119 TCCGTTTGAGCGCTAGATACAT 59.639 45.455 11.50 0.00 0.00 2.29
3695 3925 1.746787 TCCGTTTGAGCGCTAGATACA 59.253 47.619 11.50 0.00 0.00 2.29
3696 3926 2.486951 TCCGTTTGAGCGCTAGATAC 57.513 50.000 11.50 5.59 0.00 2.24
3697 3927 2.361119 ACATCCGTTTGAGCGCTAGATA 59.639 45.455 11.50 0.00 0.00 1.98
3698 3928 1.137086 ACATCCGTTTGAGCGCTAGAT 59.863 47.619 11.50 3.20 0.00 1.98
3699 3929 0.530744 ACATCCGTTTGAGCGCTAGA 59.469 50.000 11.50 0.00 0.00 2.43
3700 3930 2.203800 TACATCCGTTTGAGCGCTAG 57.796 50.000 11.50 0.00 0.00 3.42
3701 3931 2.361119 AGATACATCCGTTTGAGCGCTA 59.639 45.455 11.50 0.00 0.00 4.26
3702 3932 1.137086 AGATACATCCGTTTGAGCGCT 59.863 47.619 11.27 11.27 0.00 5.92
3703 3933 1.571919 AGATACATCCGTTTGAGCGC 58.428 50.000 0.00 0.00 0.00 5.92
3704 3934 4.224715 TCTAGATACATCCGTTTGAGCG 57.775 45.455 0.00 0.00 0.00 5.03
3705 3935 5.533482 ACATCTAGATACATCCGTTTGAGC 58.467 41.667 4.54 0.00 0.00 4.26
3706 3936 9.698309 AAATACATCTAGATACATCCGTTTGAG 57.302 33.333 4.54 0.00 0.00 3.02
3707 3937 9.692749 GAAATACATCTAGATACATCCGTTTGA 57.307 33.333 4.54 0.00 0.00 2.69
3708 3938 9.476202 TGAAATACATCTAGATACATCCGTTTG 57.524 33.333 4.54 0.00 0.00 2.93
3709 3939 9.698309 CTGAAATACATCTAGATACATCCGTTT 57.302 33.333 4.54 0.85 0.00 3.60
3727 3957 6.448006 ACGGATGTATCTAGCACTGAAATAC 58.552 40.000 0.00 0.00 0.00 1.89
3750 3980 6.562270 CGATCCATATTACTTGTCGCTCAAAC 60.562 42.308 0.00 0.00 35.48 2.93
3873 4110 6.588719 TGCATATTATTCCTGTAAATGGGC 57.411 37.500 0.00 0.00 0.00 5.36
4081 4583 4.650131 GGTGCTTAGTATGTTCCTCTAGGT 59.350 45.833 0.00 0.00 36.34 3.08
4083 4585 5.854010 TGGTGCTTAGTATGTTCCTCTAG 57.146 43.478 0.00 0.00 0.00 2.43
4084 4586 7.201974 GGTTATGGTGCTTAGTATGTTCCTCTA 60.202 40.741 0.00 0.00 0.00 2.43
4134 4636 7.949690 ACCTTTACAAGTTAACTTTTCAGGT 57.050 32.000 21.88 21.88 33.11 4.00
4175 4677 9.774742 CTCACTTTTAACTTTAATGATGCTACC 57.225 33.333 0.00 0.00 0.00 3.18
4199 4701 4.621991 TGTTCACTGCTAGTTTCTGTCTC 58.378 43.478 0.00 0.00 0.00 3.36
4347 4850 0.761187 TCTCTCCAGCTGTGCTTTGT 59.239 50.000 13.81 0.00 36.40 2.83
4360 4863 3.133003 TGCAACAAGCCTATACTCTCTCC 59.867 47.826 0.00 0.00 44.83 3.71
4365 4868 7.678947 ATATCATTGCAACAAGCCTATACTC 57.321 36.000 0.00 0.00 44.83 2.59
4422 4928 4.988540 AGACAAATTCAAGATTCACGACGA 59.011 37.500 0.00 0.00 0.00 4.20
4423 4929 5.269459 AGACAAATTCAAGATTCACGACG 57.731 39.130 0.00 0.00 0.00 5.12
4452 4958 6.459024 GCGCAACAAACAATTAGGGATACATA 60.459 38.462 0.30 0.00 39.74 2.29
4461 4967 6.630676 AATGTATGCGCAACAAACAATTAG 57.369 33.333 17.11 0.00 0.00 1.73
4462 4968 7.413475 AAAATGTATGCGCAACAAACAATTA 57.587 28.000 17.11 0.00 0.00 1.40
4467 4973 6.816377 ACAATAAAATGTATGCGCAACAAAC 58.184 32.000 17.11 11.40 0.00 2.93
4468 4974 8.694975 ATACAATAAAATGTATGCGCAACAAA 57.305 26.923 17.11 0.00 43.17 2.83
4499 5005 9.619316 GCACAACATAAATTGATTACTGTGTTA 57.381 29.630 9.11 0.00 35.90 2.41
4506 5012 7.008628 GCTGACAGCACAACATAAATTGATTAC 59.991 37.037 22.62 0.00 41.89 1.89
4531 5037 1.464997 GGAACTTGACGAACTGATGGC 59.535 52.381 0.00 0.00 0.00 4.40
4544 5050 6.983307 CAGGAACTCTAGTCATATGGAACTTG 59.017 42.308 2.13 1.60 34.60 3.16
4549 5055 5.103473 AGTCCAGGAACTCTAGTCATATGGA 60.103 44.000 2.13 0.00 34.60 3.41
4556 5062 4.337145 TCTCAAGTCCAGGAACTCTAGTC 58.663 47.826 0.00 0.00 34.60 2.59
4560 5066 3.309296 TGTTCTCAAGTCCAGGAACTCT 58.691 45.455 0.00 0.00 38.86 3.24
4615 5121 9.868277 TCACAAAAATTGTAAATCTGTTGACTT 57.132 25.926 0.00 0.00 43.23 3.01
4644 5150 9.553064 CAATCATCTATAACTGCTTTCCTACTT 57.447 33.333 0.00 0.00 0.00 2.24
4666 5172 4.853743 GCTAACACTTAAGCAACTGCAATC 59.146 41.667 1.29 0.00 45.16 2.67
4707 5412 5.179452 AGGCAACCACTATGACTAAATGT 57.821 39.130 0.00 0.00 33.30 2.71
4760 5465 1.701847 ACATCAGGTGAGAACAGCCTT 59.298 47.619 0.00 0.00 44.43 4.35
4768 5473 4.588951 ACTTTGTCAGTACATCAGGTGAGA 59.411 41.667 0.00 0.00 34.97 3.27
4813 5537 9.013229 TGCATCAAGTTAGTTATCTGACAAAAT 57.987 29.630 0.00 0.00 33.41 1.82
4827 5551 6.140303 AGCAATTATGGTGCATCAAGTTAG 57.860 37.500 2.42 0.00 44.74 2.34
4841 5565 7.933396 TCACACATCCATAAGAAGCAATTATG 58.067 34.615 8.02 8.02 39.36 1.90
5009 5996 5.694910 TGTTTCCGACTGAAAACTGTATCTC 59.305 40.000 0.00 0.00 44.30 2.75
5126 6116 8.775527 GGCTTATAGCTCCTATCTTGTTAAAAC 58.224 37.037 0.00 0.00 41.99 2.43
5210 6488 7.647907 ATGATGCTCTTCAAAACACATTTTC 57.352 32.000 0.00 0.00 35.79 2.29
5443 6734 1.539065 GCATACAGTGACTGGATCGGG 60.539 57.143 17.92 3.39 31.81 5.14
5553 6844 5.188988 AGTTGTTATTCCTCCCCTTTACC 57.811 43.478 0.00 0.00 0.00 2.85
5585 6876 3.221771 CACCCTTCTCATCACACCAAAA 58.778 45.455 0.00 0.00 0.00 2.44
5586 6877 2.488891 CCACCCTTCTCATCACACCAAA 60.489 50.000 0.00 0.00 0.00 3.28
5587 6878 1.073763 CCACCCTTCTCATCACACCAA 59.926 52.381 0.00 0.00 0.00 3.67
5588 6879 0.692476 CCACCCTTCTCATCACACCA 59.308 55.000 0.00 0.00 0.00 4.17
5598 6889 1.923148 CAACTAATCCCCCACCCTTCT 59.077 52.381 0.00 0.00 0.00 2.85
5609 6900 6.698380 TCTCTTTGTACAGGTCAACTAATCC 58.302 40.000 0.00 0.00 0.00 3.01
5630 6926 3.292423 GCAAACAGCGTCTTCTTTTCTC 58.708 45.455 0.00 0.00 0.00 2.87
5864 7166 2.002586 AGACACGATGAAATGGCTTCG 58.997 47.619 0.00 0.00 40.14 3.79
5889 7191 2.928334 CTCCTCATAAAGCTGTGGCAT 58.072 47.619 0.00 0.00 41.70 4.40
5892 7194 2.286872 CTGCTCCTCATAAAGCTGTGG 58.713 52.381 0.00 0.00 39.31 4.17
5912 7214 0.784778 GTCGCATCGCCTAGCAATAC 59.215 55.000 0.00 0.00 0.00 1.89
5949 7272 0.445436 CAAGAGCTGGATGAACGCAC 59.555 55.000 0.00 0.00 0.00 5.34
5955 7278 3.006217 CCATCGATACAAGAGCTGGATGA 59.994 47.826 0.00 0.00 33.44 2.92
5962 7285 4.541779 CAGTACTCCATCGATACAAGAGC 58.458 47.826 0.00 0.00 0.00 4.09
5976 7299 3.055021 AGAAAGCCTTTAGCCAGTACTCC 60.055 47.826 0.00 0.00 45.47 3.85
6108 7452 2.690778 GCCCATCGTGGTTGCTGTC 61.691 63.158 3.82 0.00 35.17 3.51
6234 7582 3.920231 TTGTCCTGAATCCTGATGGAG 57.080 47.619 0.00 0.00 46.91 3.86
6236 7584 4.441079 GCATTTTGTCCTGAATCCTGATGG 60.441 45.833 0.00 0.00 0.00 3.51
6246 7595 0.313672 GTTGGCGCATTTTGTCCTGA 59.686 50.000 10.83 0.00 0.00 3.86
6317 7667 0.527600 TACTGATCATGACCGCACGC 60.528 55.000 0.00 0.00 0.00 5.34
6329 7679 7.148722 GCAACAACAGTCTTAAGAGTACTGATC 60.149 40.741 22.78 4.10 42.59 2.92
6381 7731 3.168528 AACTGGCCGTGTGACCCT 61.169 61.111 0.00 0.00 0.00 4.34
6409 7759 1.338107 CCGACAGATGCCCAGGTATA 58.662 55.000 0.00 0.00 0.00 1.47
6410 7760 2.044806 GCCGACAGATGCCCAGGTAT 62.045 60.000 0.00 0.00 0.00 2.73
6411 7761 2.731571 GCCGACAGATGCCCAGGTA 61.732 63.158 0.00 0.00 0.00 3.08
6412 7762 4.101448 GCCGACAGATGCCCAGGT 62.101 66.667 0.00 0.00 0.00 4.00
6413 7763 4.864334 GGCCGACAGATGCCCAGG 62.864 72.222 0.00 0.00 41.97 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.