Multiple sequence alignment - TraesCS4D01G308400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G308400 chr4D 100.000 3320 0 0 1 3320 476314991 476311672 0.000000e+00 6131.0
1 TraesCS4D01G308400 chr4B 93.871 2333 97 13 693 3015 600669392 600667096 0.000000e+00 3474.0
2 TraesCS4D01G308400 chr4B 82.043 323 41 14 3012 3320 600667065 600666746 3.290000e-65 259.0
3 TraesCS4D01G308400 chr4B 93.902 164 7 2 1 161 600670429 600670266 9.200000e-61 244.0
4 TraesCS4D01G308400 chr4B 92.857 84 6 0 1581 1664 67880717 67880634 4.500000e-24 122.0
5 TraesCS4D01G308400 chr4B 97.143 70 2 0 263 332 600670139 600670070 5.820000e-23 119.0
6 TraesCS4D01G308400 chr4A 89.076 2673 173 48 706 3320 683496815 683494204 0.000000e+00 3208.0
7 TraesCS4D01G308400 chr4A 90.588 340 22 4 1 331 683499167 683498829 3.040000e-120 442.0
8 TraesCS4D01G308400 chr4A 79.558 362 25 16 346 661 683498761 683498403 2.590000e-51 213.0
9 TraesCS4D01G308400 chr1B 90.526 95 9 0 1572 1666 105205110 105205016 3.480000e-25 126.0
10 TraesCS4D01G308400 chr6A 95.745 47 2 0 361 407 448702220 448702174 3.550000e-10 76.8
11 TraesCS4D01G308400 chr6A 93.878 49 2 1 361 408 432824797 432824749 4.590000e-09 73.1
12 TraesCS4D01G308400 chr1A 90.164 61 3 2 360 419 208881708 208881766 3.550000e-10 76.8
13 TraesCS4D01G308400 chrUn 93.878 49 2 1 361 408 75920478 75920526 4.590000e-09 73.1
14 TraesCS4D01G308400 chr7B 93.878 49 2 1 361 408 15482281 15482233 4.590000e-09 73.1
15 TraesCS4D01G308400 chr5D 87.500 64 6 2 361 423 322789851 322789789 4.590000e-09 73.1
16 TraesCS4D01G308400 chr5A 87.500 64 6 2 361 423 419367729 419367667 4.590000e-09 73.1
17 TraesCS4D01G308400 chr2D 93.878 49 2 1 356 404 83962473 83962520 4.590000e-09 73.1
18 TraesCS4D01G308400 chr1D 93.878 49 2 1 361 408 200548923 200548971 4.590000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G308400 chr4D 476311672 476314991 3319 True 6131.000000 6131 100.000000 1 3320 1 chr4D.!!$R1 3319
1 TraesCS4D01G308400 chr4B 600666746 600670429 3683 True 1024.000000 3474 91.739750 1 3320 4 chr4B.!!$R2 3319
2 TraesCS4D01G308400 chr4A 683494204 683499167 4963 True 1287.666667 3208 86.407333 1 3320 3 chr4A.!!$R1 3319

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
591 868 0.537188 TCTCGATGGAGAACAAGGGC 59.463 55.000 4.77 0.0 46.11 5.19 F
617 894 1.153046 CCACCAAACACACCCTCGT 60.153 57.895 0.00 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1472 3451 1.449246 CTGCCGGAGAAGAGCTTGG 60.449 63.158 5.05 0.0 0.0 3.61 R
2396 4381 2.101750 TGGTTGCTCTGAAGTACGAACA 59.898 45.455 0.00 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 5.348997 AGACTGAATTGCTTAAGTTACTCGC 59.651 40.000 4.02 0.00 0.00 5.03
76 77 2.258726 GGCGTGTTTGGTGGAGTCC 61.259 63.158 0.73 0.73 0.00 3.85
107 110 3.569701 TGAAGGAGGCTTGAATGTTCAAC 59.430 43.478 4.16 2.79 41.88 3.18
199 210 9.459640 TCTAACACAGTTTATATTGTAGATCGC 57.540 33.333 0.00 0.00 0.00 4.58
200 211 7.478520 AACACAGTTTATATTGTAGATCGCC 57.521 36.000 0.00 0.00 0.00 5.54
218 286 1.959042 CCGCAATTCTAGATGGCAGT 58.041 50.000 10.28 0.00 0.00 4.40
243 311 1.079503 GAGCTCATCGGTTTGTGTCC 58.920 55.000 9.40 0.00 0.00 4.02
246 314 2.301870 AGCTCATCGGTTTGTGTCCTTA 59.698 45.455 0.00 0.00 0.00 2.69
254 322 6.288941 TCGGTTTGTGTCCTTAATCTATGA 57.711 37.500 0.00 0.00 0.00 2.15
278 346 5.573337 AATTCTACATTGGAAAGAGCAGC 57.427 39.130 0.00 0.00 0.00 5.25
332 400 6.430925 TGGTTCAATGTTTTCCATGTCTAGAG 59.569 38.462 0.00 0.00 32.82 2.43
333 401 6.317857 GTTCAATGTTTTCCATGTCTAGAGC 58.682 40.000 0.00 0.00 32.82 4.09
334 402 5.559770 TCAATGTTTTCCATGTCTAGAGCA 58.440 37.500 0.00 0.00 32.82 4.26
335 403 5.645067 TCAATGTTTTCCATGTCTAGAGCAG 59.355 40.000 0.00 0.00 32.82 4.24
336 404 4.623932 TGTTTTCCATGTCTAGAGCAGT 57.376 40.909 0.00 0.00 0.00 4.40
337 405 5.738619 TGTTTTCCATGTCTAGAGCAGTA 57.261 39.130 0.00 0.00 0.00 2.74
338 406 6.109156 TGTTTTCCATGTCTAGAGCAGTAA 57.891 37.500 0.00 0.00 0.00 2.24
340 408 6.595326 TGTTTTCCATGTCTAGAGCAGTAATG 59.405 38.462 0.00 0.00 0.00 1.90
341 409 4.327982 TCCATGTCTAGAGCAGTAATGC 57.672 45.455 7.15 7.15 0.00 3.56
343 411 4.162131 TCCATGTCTAGAGCAGTAATGCAA 59.838 41.667 18.53 1.29 37.25 4.08
373 496 7.739498 TTTTTCATTGTTACTCCCTCTGTAC 57.261 36.000 0.00 0.00 0.00 2.90
375 498 5.401531 TCATTGTTACTCCCTCTGTACAC 57.598 43.478 0.00 0.00 0.00 2.90
383 506 9.925545 TGTTACTCCCTCTGTACACTAATATAA 57.074 33.333 0.00 0.00 0.00 0.98
387 510 7.444792 ACTCCCTCTGTACACTAATATAAGACG 59.555 40.741 0.00 0.00 0.00 4.18
406 529 9.924650 ATAAGACGTTTTAGATCACTAAAGTGT 57.075 29.630 9.81 0.00 45.40 3.55
422 672 8.308931 CACTAAAGTGTATAGTGTACAAAGGGA 58.691 37.037 0.00 0.00 43.31 4.20
423 673 8.529476 ACTAAAGTGTATAGTGTACAAAGGGAG 58.471 37.037 0.00 0.00 32.50 4.30
424 674 6.930068 AAGTGTATAGTGTACAAAGGGAGT 57.070 37.500 0.00 0.00 0.00 3.85
433 683 4.868734 GTGTACAAAGGGAGTAGTACATGC 59.131 45.833 0.00 0.00 45.70 4.06
450 700 2.284754 TGCTTGTGGTGGCATTCTTA 57.715 45.000 0.00 0.00 33.23 2.10
463 713 6.238759 GGTGGCATTCTTACAATATCAGGAAC 60.239 42.308 0.00 0.00 0.00 3.62
464 714 6.318648 GTGGCATTCTTACAATATCAGGAACA 59.681 38.462 0.00 0.00 0.00 3.18
507 760 9.586150 CTCGTATACATGCTATCAAACAAAATC 57.414 33.333 3.32 0.00 0.00 2.17
515 768 7.686438 TGCTATCAAACAAAATCTCAGCTTA 57.314 32.000 0.00 0.00 0.00 3.09
577 854 1.028130 CTAGAGCCAGCATGTCTCGA 58.972 55.000 0.00 0.00 32.42 4.04
591 868 0.537188 TCTCGATGGAGAACAAGGGC 59.463 55.000 4.77 0.00 46.11 5.19
617 894 1.153046 CCACCAAACACACCCTCGT 60.153 57.895 0.00 0.00 0.00 4.18
695 1373 8.282592 TGAAATCGTGATTTTTGTCTTCTACAG 58.717 33.333 9.06 0.00 40.77 2.74
807 2770 8.446599 AAATGTAATTTCCCGGTGTAATCTAG 57.553 34.615 0.00 0.00 44.81 2.43
808 2771 5.362263 TGTAATTTCCCGGTGTAATCTAGC 58.638 41.667 0.00 0.00 0.00 3.42
814 2777 2.595238 CCGGTGTAATCTAGCTAGGGT 58.405 52.381 20.58 11.07 0.00 4.34
953 2918 3.411351 CTGAACGCGAACCCACCG 61.411 66.667 15.93 0.00 0.00 4.94
1905 3884 4.747218 GTCTGGGACCTCGAGACT 57.253 61.111 15.71 0.00 44.54 3.24
2022 4001 1.303643 CAAGGCCTGGAGGTCCAAC 60.304 63.158 5.69 0.00 46.97 3.77
2026 4005 2.606519 CCTGGAGGTCCAACCCGA 60.607 66.667 0.00 0.00 46.97 5.14
2085 4067 0.321671 CCCACAGAGAAGAAGGCGAA 59.678 55.000 0.00 0.00 0.00 4.70
2095 4077 3.524648 GAAGGCGAACGGGTGGTCA 62.525 63.158 0.00 0.00 0.00 4.02
2291 4273 4.803426 CGGCGAGGTCAGAGTGGC 62.803 72.222 0.00 0.00 0.00 5.01
2292 4274 4.459089 GGCGAGGTCAGAGTGGCC 62.459 72.222 0.00 0.00 44.07 5.36
2331 4313 7.577046 GCAGCTGCATCCTGAATTATTCATTAT 60.577 37.037 33.36 2.69 38.94 1.28
2332 4314 8.304596 CAGCTGCATCCTGAATTATTCATTATT 58.695 33.333 8.17 0.00 39.30 1.40
2333 4315 9.524496 AGCTGCATCCTGAATTATTCATTATTA 57.476 29.630 8.17 0.00 39.30 0.98
2396 4381 1.676014 GCTTCGATTGTAGGCCAGTGT 60.676 52.381 5.01 0.00 0.00 3.55
2415 4400 3.060473 GTGTGTTCGTACTTCAGAGCAAC 60.060 47.826 0.00 0.00 29.82 4.17
2425 4410 4.353777 ACTTCAGAGCAACCAGTAGGATA 58.646 43.478 0.00 0.00 38.69 2.59
2514 4504 4.582869 TCAGAATCTGAAGAACCACCATG 58.417 43.478 10.99 0.00 37.57 3.66
2528 4518 4.589908 ACCACCATGACTTCATTCTTACC 58.410 43.478 0.00 0.00 33.61 2.85
2765 4775 6.068010 TCATCTCTCTTTCTCTCCCTATGAC 58.932 44.000 0.00 0.00 0.00 3.06
2768 4778 4.200874 TCTCTTTCTCTCCCTATGACGTC 58.799 47.826 9.11 9.11 0.00 4.34
2770 4780 2.414994 TTCTCTCCCTATGACGTCGT 57.585 50.000 15.78 15.78 0.00 4.34
2855 4865 2.754375 GGAAGCGTGAAAGGGGGA 59.246 61.111 0.00 0.00 0.00 4.81
2891 4901 2.110835 TGCGCAAAGGTCAGAGCA 59.889 55.556 8.16 0.00 38.22 4.26
3005 5015 1.059584 TGGCTTGAGGTGTTCCTGGA 61.060 55.000 0.00 0.00 45.24 3.86
3037 5082 4.178540 CCAACCACATGAGAAAATGATGC 58.821 43.478 0.00 0.00 0.00 3.91
3045 5101 6.965500 CACATGAGAAAATGATGCAACTAGTC 59.035 38.462 0.00 0.00 0.00 2.59
3062 5118 7.306213 CAACTAGTCAAGAGATAAACTGTCGA 58.694 38.462 0.00 0.00 0.00 4.20
3063 5119 7.633193 ACTAGTCAAGAGATAAACTGTCGAT 57.367 36.000 0.00 0.00 0.00 3.59
3098 5154 3.009473 TGGATTCTAAAGAGCAGCTTGGT 59.991 43.478 0.00 0.00 36.80 3.67
3119 5180 4.357142 GTGCATGCACAAATAATCTCCAG 58.643 43.478 39.12 0.00 45.53 3.86
3137 5198 7.219484 TCTCCAGAAACAAAAATCCAATCTC 57.781 36.000 0.00 0.00 0.00 2.75
3146 5207 7.065120 ACAAAAATCCAATCTCCAAACATCA 57.935 32.000 0.00 0.00 0.00 3.07
3148 5209 8.814931 ACAAAAATCCAATCTCCAAACATCATA 58.185 29.630 0.00 0.00 0.00 2.15
3169 5230 2.158755 ACCAATGTGCCAGCTATAGACC 60.159 50.000 3.21 0.00 0.00 3.85
3173 5234 2.970987 TGTGCCAGCTATAGACCCATA 58.029 47.619 3.21 0.00 0.00 2.74
3178 5239 3.779444 CCAGCTATAGACCCATACCTCA 58.221 50.000 3.21 0.00 0.00 3.86
3179 5240 3.511934 CCAGCTATAGACCCATACCTCAC 59.488 52.174 3.21 0.00 0.00 3.51
3213 5276 8.689061 TGAATATTACAGAGAAAAGCAATGCAT 58.311 29.630 8.35 0.00 0.00 3.96
3236 5299 5.186942 TGTACAACATATGTGCCGGTAAAT 58.813 37.500 9.63 0.49 43.29 1.40
3245 5308 2.132762 GTGCCGGTAAATCGACATAGG 58.867 52.381 1.90 0.00 0.00 2.57
3308 5372 5.764686 TGTGTCCAGCTAGCCATTAATATTG 59.235 40.000 12.13 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 2.590575 ACTCCACCAAACACGCCG 60.591 61.111 0.00 0.00 0.00 6.46
76 77 3.753272 TCAAGCCTCCTTCAAAATTCTCG 59.247 43.478 0.00 0.00 0.00 4.04
107 110 4.624024 CCAAACACATAAGAATGCAAGCTG 59.376 41.667 0.00 0.00 36.50 4.24
176 187 6.200286 CGGCGATCTACAATATAAACTGTGTT 59.800 38.462 0.00 0.00 0.00 3.32
199 210 1.600957 CACTGCCATCTAGAATTGCGG 59.399 52.381 15.10 15.10 0.00 5.69
200 211 2.543012 CTCACTGCCATCTAGAATTGCG 59.457 50.000 0.00 0.05 0.00 4.85
254 322 6.015180 TGCTGCTCTTTCCAATGTAGAATTTT 60.015 34.615 0.00 0.00 0.00 1.82
278 346 5.350914 TCAAAGAACAAGGCAAACAACATTG 59.649 36.000 0.00 0.00 0.00 2.82
405 528 8.511604 TGTACTACTCCCTTTGTACACTATAC 57.488 38.462 0.00 0.00 39.85 1.47
406 529 9.128404 CATGTACTACTCCCTTTGTACACTATA 57.872 37.037 0.00 0.00 44.94 1.31
407 530 7.417570 GCATGTACTACTCCCTTTGTACACTAT 60.418 40.741 0.00 0.00 44.94 2.12
417 667 3.055094 CCACAAGCATGTACTACTCCCTT 60.055 47.826 0.00 0.00 37.82 3.95
422 672 2.615493 GCCACCACAAGCATGTACTACT 60.615 50.000 0.00 0.00 37.82 2.57
423 673 1.737793 GCCACCACAAGCATGTACTAC 59.262 52.381 0.00 0.00 37.82 2.73
424 674 1.349357 TGCCACCACAAGCATGTACTA 59.651 47.619 0.00 0.00 37.82 1.82
433 683 4.789012 ATTGTAAGAATGCCACCACAAG 57.211 40.909 0.00 0.00 30.23 3.16
450 700 7.822822 GTGTAGTTACCTTGTTCCTGATATTGT 59.177 37.037 0.00 0.00 0.00 2.71
463 713 3.240069 CGAGTTCGGTGTAGTTACCTTG 58.760 50.000 0.00 0.00 38.62 3.61
464 714 2.887152 ACGAGTTCGGTGTAGTTACCTT 59.113 45.455 6.48 0.00 44.95 3.50
472 722 3.628942 AGCATGTATACGAGTTCGGTGTA 59.371 43.478 6.48 0.00 44.95 2.90
577 854 0.984230 TTCTCGCCCTTGTTCTCCAT 59.016 50.000 0.00 0.00 0.00 3.41
591 868 0.817634 TGTGTTTGGTGGCCTTCTCG 60.818 55.000 3.32 0.00 0.00 4.04
624 901 1.598130 GCAACAGACTCCACGCCTT 60.598 57.895 0.00 0.00 0.00 4.35
674 1352 6.745116 TCTCTGTAGAAGACAAAAATCACGA 58.255 36.000 0.00 0.00 37.70 4.35
695 1373 9.950496 ACCATATCAGAAACATAACCATATCTC 57.050 33.333 0.00 0.00 0.00 2.75
712 2671 8.366401 AGAAAGAGATGTATCACACCATATCAG 58.634 37.037 0.00 0.00 32.96 2.90
782 2745 7.012989 GCTAGATTACACCGGGAAATTACATTT 59.987 37.037 6.32 0.00 34.64 2.32
794 2757 2.595238 ACCCTAGCTAGATTACACCGG 58.405 52.381 22.70 13.73 0.00 5.28
973 2938 2.598632 GCGGCGATCGAATGGGAAG 61.599 63.158 21.57 0.97 42.43 3.46
974 2939 2.587753 GCGGCGATCGAATGGGAA 60.588 61.111 21.57 0.00 42.43 3.97
1243 3222 1.092345 GCCTCTCCTTCATCGGTTGC 61.092 60.000 0.00 0.00 0.00 4.17
1284 3263 3.053896 GGTTTGGCCTTCGTCGGG 61.054 66.667 3.32 0.00 0.00 5.14
1416 3395 4.459089 GAGTGACCCTCCAGCCGC 62.459 72.222 0.00 0.00 33.79 6.53
1428 3407 2.741092 GTGACCGCCTTGGAGTGA 59.259 61.111 0.00 0.00 42.00 3.41
1461 3440 3.978571 GAGCTTGGCGGACCCTTCC 62.979 68.421 0.00 0.00 38.77 3.46
1472 3451 1.449246 CTGCCGGAGAAGAGCTTGG 60.449 63.158 5.05 0.00 0.00 3.61
1686 3665 2.452116 TGCAAGTAGGGCAGTGACT 58.548 52.632 0.00 0.00 36.11 3.41
2095 4077 4.388499 GTGCGTCCCGTCCATGGT 62.388 66.667 12.58 0.00 0.00 3.55
2314 4296 6.939730 TGCGCCTAATAATGAATAATTCAGGA 59.060 34.615 4.18 0.00 43.98 3.86
2396 4381 2.101750 TGGTTGCTCTGAAGTACGAACA 59.898 45.455 0.00 0.00 0.00 3.18
2415 4400 3.704566 TGCACTGGTAAGTATCCTACTGG 59.295 47.826 0.00 0.00 39.39 4.00
2425 4410 6.598064 GGTATCTTTACATTGCACTGGTAAGT 59.402 38.462 9.06 5.36 36.98 2.24
2509 4499 4.020573 TGACGGTAAGAATGAAGTCATGGT 60.021 41.667 0.00 0.00 36.56 3.55
2514 4504 5.333875 GGTTTGTGACGGTAAGAATGAAGTC 60.334 44.000 0.00 0.00 0.00 3.01
2528 4518 5.111989 ACATCTGAGATATGGTTTGTGACG 58.888 41.667 0.00 0.00 0.00 4.35
2765 4775 1.805945 GCCCAAGCACTAGACGACG 60.806 63.158 0.00 0.00 39.53 5.12
2768 4778 0.037326 TGAAGCCCAAGCACTAGACG 60.037 55.000 0.00 0.00 43.56 4.18
2770 4780 0.324943 GGTGAAGCCCAAGCACTAGA 59.675 55.000 0.00 0.00 43.56 2.43
2801 4811 4.633175 CATCAGATGCTCTAGCTTCATGT 58.367 43.478 17.16 3.04 44.66 3.21
2855 4865 0.106149 ACGAGAAAGGTGGCGTTCTT 59.894 50.000 0.00 0.00 34.23 2.52
2864 4874 1.507141 CCTTTGCGCACGAGAAAGGT 61.507 55.000 23.71 0.00 40.56 3.50
2986 4996 1.059584 TCCAGGAACACCTCAAGCCA 61.060 55.000 0.00 0.00 30.75 4.75
2987 4997 0.329596 ATCCAGGAACACCTCAAGCC 59.670 55.000 0.00 0.00 30.75 4.35
3005 5015 6.126863 TCTCATGTGGTTGGTTCTCTTAAT 57.873 37.500 0.00 0.00 0.00 1.40
3037 5082 7.306213 TCGACAGTTTATCTCTTGACTAGTTG 58.694 38.462 0.00 0.00 0.00 3.16
3045 5101 8.425577 AATACCAATCGACAGTTTATCTCTTG 57.574 34.615 0.00 0.00 0.00 3.02
3075 5131 3.376546 CCAAGCTGCTCTTTAGAATCCAC 59.623 47.826 1.00 0.00 31.27 4.02
3098 5154 4.271661 TCTGGAGATTATTTGTGCATGCA 58.728 39.130 18.46 18.46 0.00 3.96
3111 5172 8.198807 AGATTGGATTTTTGTTTCTGGAGATT 57.801 30.769 0.00 0.00 0.00 2.40
3119 5180 7.784633 TGTTTGGAGATTGGATTTTTGTTTC 57.215 32.000 0.00 0.00 0.00 2.78
3137 5198 3.195182 TGGCACATTGGTATGATGTTTGG 59.805 43.478 0.00 0.00 35.64 3.28
3146 5207 4.263068 GGTCTATAGCTGGCACATTGGTAT 60.263 45.833 0.00 2.43 38.20 2.73
3148 5209 2.158755 GGTCTATAGCTGGCACATTGGT 60.159 50.000 0.00 0.00 38.20 3.67
3169 5230 2.179427 TCAGTGTCCAGTGAGGTATGG 58.821 52.381 0.68 0.00 35.96 2.74
3173 5234 5.483937 TGTAATATTCAGTGTCCAGTGAGGT 59.516 40.000 5.08 2.26 41.33 3.85
3178 5239 7.482169 TTCTCTGTAATATTCAGTGTCCAGT 57.518 36.000 11.96 0.00 34.86 4.00
3179 5240 8.777865 TTTTCTCTGTAATATTCAGTGTCCAG 57.222 34.615 11.96 0.00 34.86 3.86
3213 5276 2.772077 ACCGGCACATATGTTGTACA 57.228 45.000 5.37 0.00 36.57 2.90
3236 5299 0.981183 AAACTGCACCCCTATGTCGA 59.019 50.000 0.00 0.00 0.00 4.20
3245 5308 1.604604 TGTTAGCTCAAACTGCACCC 58.395 50.000 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.