Multiple sequence alignment - TraesCS4D01G305500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G305500 chr4D 100.000 4394 0 0 1 4394 473854055 473858448 0.000000e+00 8115.0
1 TraesCS4D01G305500 chr4D 92.836 335 21 3 176 507 475317097 475317431 2.380000e-132 483.0
2 TraesCS4D01G305500 chr4B 94.091 3148 132 26 527 3671 596773609 596776705 0.000000e+00 4734.0
3 TraesCS4D01G305500 chr4B 88.898 1162 82 9 925 2086 505263426 505262312 0.000000e+00 1387.0
4 TraesCS4D01G305500 chr4B 90.783 868 77 3 2608 3475 505262318 505261454 0.000000e+00 1157.0
5 TraesCS4D01G305500 chr4B 96.855 159 5 0 15 173 596773446 596773604 2.610000e-67 267.0
6 TraesCS4D01G305500 chr4B 96.610 59 2 0 646 704 505263697 505263639 1.010000e-16 99.0
7 TraesCS4D01G305500 chr4B 94.118 51 3 0 105 155 505263756 505263706 1.310000e-10 78.7
8 TraesCS4D01G305500 chr4A 92.793 3011 153 24 507 3499 680450694 680453658 0.000000e+00 4300.0
9 TraesCS4D01G305500 chr4A 77.974 227 46 4 2542 2766 68959028 68959252 5.930000e-29 139.0
10 TraesCS4D01G305500 chr4A 98.333 60 1 0 114 173 680450644 680450703 6.010000e-19 106.0
11 TraesCS4D01G305500 chr3A 90.292 958 59 6 925 1882 514629917 514628994 0.000000e+00 1223.0
12 TraesCS4D01G305500 chr3A 98.039 51 1 0 105 155 514630595 514630545 6.050000e-14 89.8
13 TraesCS4D01G305500 chr7A 85.242 1179 99 25 925 2086 334333572 334332452 0.000000e+00 1144.0
14 TraesCS4D01G305500 chr7A 89.516 868 83 5 2608 3475 334332458 334331599 0.000000e+00 1092.0
15 TraesCS4D01G305500 chr7A 93.182 132 9 0 646 777 334333915 334333784 1.250000e-45 195.0
16 TraesCS4D01G305500 chr7B 91.530 366 23 8 149 509 98752510 98752148 8.490000e-137 497.0
17 TraesCS4D01G305500 chr5B 93.195 338 19 4 176 509 322857256 322857593 1.100000e-135 494.0
18 TraesCS4D01G305500 chr5B 88.950 362 28 6 4033 4394 392055413 392055762 1.880000e-118 436.0
19 TraesCS4D01G305500 chr5B 88.430 363 29 7 4032 4394 392099022 392099371 4.060000e-115 425.0
20 TraesCS4D01G305500 chr5B 88.398 362 28 7 4033 4394 392040125 392040472 1.460000e-114 424.0
21 TraesCS4D01G305500 chr5B 84.433 379 24 11 3677 4038 392039185 392039545 1.510000e-89 340.0
22 TraesCS4D01G305500 chr5B 83.641 379 27 11 3677 4038 392098083 392098443 1.520000e-84 324.0
23 TraesCS4D01G305500 chr5B 91.279 172 10 1 1820 1991 710870556 710870722 3.420000e-56 230.0
24 TraesCS4D01G305500 chr5B 88.550 131 10 2 3913 4038 392054710 392054840 2.120000e-33 154.0
25 TraesCS4D01G305500 chr5B 72.887 284 59 17 2702 2973 352383989 352384266 1.010000e-11 82.4
26 TraesCS4D01G305500 chr5B 89.091 55 6 0 2699 2753 339079666 339079612 7.890000e-08 69.4
27 TraesCS4D01G305500 chr2B 93.195 338 19 4 176 509 2459008 2458671 1.100000e-135 494.0
28 TraesCS4D01G305500 chr2D 92.878 337 20 4 176 509 338681033 338680698 1.840000e-133 486.0
29 TraesCS4D01G305500 chr2D 92.308 338 22 4 175 509 497963687 497963351 1.110000e-130 477.0
30 TraesCS4D01G305500 chr5A 91.908 346 23 5 176 517 657387427 657387083 3.070000e-131 479.0
31 TraesCS4D01G305500 chr5A 90.385 52 5 0 2702 2753 390242813 390242762 7.890000e-08 69.4
32 TraesCS4D01G305500 chr1B 92.330 339 22 4 175 509 85399661 85399323 3.070000e-131 479.0
33 TraesCS4D01G305500 chr1A 92.308 338 22 4 176 509 435765413 435765750 1.110000e-130 477.0
34 TraesCS4D01G305500 chr7D 83.628 452 27 17 3708 4148 632075609 632076024 8.920000e-102 381.0
35 TraesCS4D01G305500 chrUn 88.350 206 12 3 4189 4394 435172277 435172470 2.040000e-58 237.0
36 TraesCS4D01G305500 chrUn 89.062 128 9 2 3916 4038 332495100 332494973 2.120000e-33 154.0
37 TraesCS4D01G305500 chrUn 88.550 131 10 2 3913 4038 378448961 378449091 2.120000e-33 154.0
38 TraesCS4D01G305500 chr5D 88.462 52 6 0 2702 2753 298280784 298280733 3.670000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G305500 chr4D 473854055 473858448 4393 False 8115.000000 8115 100.000000 1 4394 1 chr4D.!!$F1 4393
1 TraesCS4D01G305500 chr4B 596773446 596776705 3259 False 2500.500000 4734 95.473000 15 3671 2 chr4B.!!$F1 3656
2 TraesCS4D01G305500 chr4B 505261454 505263756 2302 True 680.425000 1387 92.602250 105 3475 4 chr4B.!!$R1 3370
3 TraesCS4D01G305500 chr4A 680450644 680453658 3014 False 2203.000000 4300 95.563000 114 3499 2 chr4A.!!$F2 3385
4 TraesCS4D01G305500 chr3A 514628994 514630595 1601 True 656.400000 1223 94.165500 105 1882 2 chr3A.!!$R1 1777
5 TraesCS4D01G305500 chr7A 334331599 334333915 2316 True 810.333333 1144 89.313333 646 3475 3 chr7A.!!$R1 2829
6 TraesCS4D01G305500 chr5B 392039185 392040472 1287 False 382.000000 424 86.415500 3677 4394 2 chr5B.!!$F4 717
7 TraesCS4D01G305500 chr5B 392098083 392099371 1288 False 374.500000 425 86.035500 3677 4394 2 chr5B.!!$F6 717
8 TraesCS4D01G305500 chr5B 392054710 392055762 1052 False 295.000000 436 88.750000 3913 4394 2 chr5B.!!$F5 481

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
280 281 0.034198 TGTGCAGCGGCTAACAGTAA 59.966 50.0 10.92 0.00 41.91 2.24 F
421 422 0.036732 CCTTACTGTTGGGAGCTGCA 59.963 55.0 7.79 0.00 0.00 4.41 F
437 438 0.037590 TGCATAAAAGGGTCAGCGGT 59.962 50.0 0.00 0.00 0.00 5.68 F
586 587 0.039798 GTCTTCGTCGTGTAGCACCA 60.040 55.0 0.00 0.00 0.00 4.17 F
2463 2847 0.037790 AGGCTGTCGAGCTCAAGAAC 60.038 55.0 15.40 6.56 45.44 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1215 1581 0.807496 GCTTGTCATCTTGCTCCACC 59.193 55.000 0.00 0.00 0.00 4.61 R
1401 1767 1.301401 CACGTTGAGGCCGAGGAAA 60.301 57.895 0.00 0.00 0.00 3.13 R
2357 2741 2.434884 AGTTCGCGAGCACCATGG 60.435 61.111 24.99 11.19 0.00 3.66 R
2928 3843 1.585521 CGGCTCGATGTCGTACACC 60.586 63.158 2.04 0.10 39.21 4.16 R
3865 4793 0.260230 TGTCTTGGACTTGGGCCAAA 59.740 50.000 21.28 1.71 44.23 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 4.214327 TCGGCCACGCATCGCATA 62.214 61.111 2.24 0.00 40.69 3.14
55 56 3.705638 CGGCCACGCATCGCATAG 61.706 66.667 2.24 0.00 0.00 2.23
60 61 0.786581 CCACGCATCGCATAGATCAC 59.213 55.000 0.00 0.00 37.52 3.06
193 194 6.784176 GCATAGGGCAAAAACCATAAATTTG 58.216 36.000 0.00 0.00 43.97 2.32
194 195 6.597280 GCATAGGGCAAAAACCATAAATTTGA 59.403 34.615 0.00 0.00 43.97 2.69
195 196 7.413988 GCATAGGGCAAAAACCATAAATTTGAC 60.414 37.037 0.00 0.00 43.97 3.18
198 199 6.480524 GGCAAAAACCATAAATTTGACCTC 57.519 37.500 0.00 0.00 36.32 3.85
199 200 5.120053 GGCAAAAACCATAAATTTGACCTCG 59.880 40.000 0.00 0.00 36.32 4.63
200 201 5.120053 GCAAAAACCATAAATTTGACCTCGG 59.880 40.000 0.00 0.00 36.41 4.63
201 202 5.400066 AAAACCATAAATTTGACCTCGGG 57.600 39.130 0.00 0.00 0.00 5.14
202 203 3.012934 ACCATAAATTTGACCTCGGGG 57.987 47.619 0.00 0.00 38.88 5.73
214 215 3.345508 ACCTCGGGGTGAAACTATTTC 57.654 47.619 5.91 0.00 45.43 2.17
215 216 2.640826 ACCTCGGGGTGAAACTATTTCA 59.359 45.455 5.91 0.00 45.43 2.69
253 254 8.445275 TGTTTAAAAGTATTTCACTCAGCTGA 57.555 30.769 17.19 17.19 37.28 4.26
254 255 8.342634 TGTTTAAAAGTATTTCACTCAGCTGAC 58.657 33.333 13.74 0.45 37.28 3.51
255 256 5.948992 AAAAGTATTTCACTCAGCTGACC 57.051 39.130 13.74 0.00 37.28 4.02
256 257 3.618690 AGTATTTCACTCAGCTGACCC 57.381 47.619 13.74 0.00 28.33 4.46
257 258 2.237392 AGTATTTCACTCAGCTGACCCC 59.763 50.000 13.74 0.00 28.33 4.95
258 259 1.366319 ATTTCACTCAGCTGACCCCT 58.634 50.000 13.74 0.00 0.00 4.79
259 260 2.024176 TTTCACTCAGCTGACCCCTA 57.976 50.000 13.74 0.00 0.00 3.53
260 261 2.024176 TTCACTCAGCTGACCCCTAA 57.976 50.000 13.74 0.24 0.00 2.69
261 262 2.254152 TCACTCAGCTGACCCCTAAT 57.746 50.000 13.74 0.00 0.00 1.73
262 263 1.833630 TCACTCAGCTGACCCCTAATG 59.166 52.381 13.74 2.78 0.00 1.90
263 264 1.556911 CACTCAGCTGACCCCTAATGT 59.443 52.381 13.74 3.50 0.00 2.71
264 265 1.556911 ACTCAGCTGACCCCTAATGTG 59.443 52.381 13.74 1.17 0.00 3.21
265 266 0.253044 TCAGCTGACCCCTAATGTGC 59.747 55.000 13.74 0.00 0.00 4.57
266 267 0.035152 CAGCTGACCCCTAATGTGCA 60.035 55.000 8.42 0.00 0.00 4.57
267 268 0.254178 AGCTGACCCCTAATGTGCAG 59.746 55.000 0.00 0.00 0.00 4.41
268 269 1.379642 GCTGACCCCTAATGTGCAGC 61.380 60.000 0.00 0.00 41.38 5.25
269 270 1.078497 TGACCCCTAATGTGCAGCG 60.078 57.895 0.00 0.00 0.00 5.18
270 271 1.819632 GACCCCTAATGTGCAGCGG 60.820 63.158 0.00 0.00 0.00 5.52
271 272 3.211963 CCCCTAATGTGCAGCGGC 61.212 66.667 0.31 0.31 41.68 6.53
272 273 2.124570 CCCTAATGTGCAGCGGCT 60.125 61.111 10.92 0.00 41.91 5.52
273 274 1.146041 CCCTAATGTGCAGCGGCTA 59.854 57.895 10.92 0.00 41.91 3.93
274 275 0.463654 CCCTAATGTGCAGCGGCTAA 60.464 55.000 10.92 0.00 41.91 3.09
275 276 0.657840 CCTAATGTGCAGCGGCTAAC 59.342 55.000 10.92 5.05 41.91 2.34
276 277 1.368641 CTAATGTGCAGCGGCTAACA 58.631 50.000 16.98 16.98 41.91 2.41
277 278 1.328680 CTAATGTGCAGCGGCTAACAG 59.671 52.381 18.77 2.79 41.91 3.16
278 279 0.606401 AATGTGCAGCGGCTAACAGT 60.606 50.000 18.77 15.02 41.91 3.55
279 280 0.249120 ATGTGCAGCGGCTAACAGTA 59.751 50.000 18.77 7.39 41.91 2.74
280 281 0.034198 TGTGCAGCGGCTAACAGTAA 59.966 50.000 10.92 0.00 41.91 2.24
281 282 0.721718 GTGCAGCGGCTAACAGTAAG 59.278 55.000 10.92 0.00 41.91 2.34
282 283 0.391130 TGCAGCGGCTAACAGTAAGG 60.391 55.000 10.92 0.00 41.91 2.69
283 284 1.706287 GCAGCGGCTAACAGTAAGGC 61.706 60.000 0.26 0.00 36.96 4.35
286 287 4.934989 GGCTAACAGTAAGGCGCT 57.065 55.556 7.64 0.00 0.00 5.92
288 289 1.854227 GGCTAACAGTAAGGCGCTAG 58.146 55.000 7.64 0.00 0.00 3.42
289 290 1.407979 GGCTAACAGTAAGGCGCTAGA 59.592 52.381 7.64 0.00 0.00 2.43
290 291 2.461903 GCTAACAGTAAGGCGCTAGAC 58.538 52.381 7.64 2.34 0.00 2.59
291 292 2.099427 GCTAACAGTAAGGCGCTAGACT 59.901 50.000 7.64 4.98 37.28 3.24
292 293 2.943449 AACAGTAAGGCGCTAGACTC 57.057 50.000 7.64 0.00 31.80 3.36
293 294 2.131776 ACAGTAAGGCGCTAGACTCT 57.868 50.000 7.64 0.00 31.80 3.24
294 295 3.278668 ACAGTAAGGCGCTAGACTCTA 57.721 47.619 7.64 0.00 31.80 2.43
295 296 2.944349 ACAGTAAGGCGCTAGACTCTAC 59.056 50.000 7.64 2.12 31.80 2.59
296 297 3.207778 CAGTAAGGCGCTAGACTCTACT 58.792 50.000 7.64 4.27 31.80 2.57
297 298 3.002862 CAGTAAGGCGCTAGACTCTACTG 59.997 52.174 7.64 11.84 38.94 2.74
298 299 2.131776 AAGGCGCTAGACTCTACTGT 57.868 50.000 7.64 0.00 31.80 3.55
299 300 1.384525 AGGCGCTAGACTCTACTGTG 58.615 55.000 7.64 0.00 0.00 3.66
300 301 0.248702 GGCGCTAGACTCTACTGTGC 60.249 60.000 7.64 3.36 0.00 4.57
301 302 0.452184 GCGCTAGACTCTACTGTGCA 59.548 55.000 0.00 0.00 0.00 4.57
302 303 1.532921 GCGCTAGACTCTACTGTGCAG 60.533 57.143 0.00 0.00 0.00 4.41
303 304 1.532921 CGCTAGACTCTACTGTGCAGC 60.533 57.143 0.00 0.00 0.00 5.25
304 305 1.532921 GCTAGACTCTACTGTGCAGCG 60.533 57.143 0.00 0.00 0.00 5.18
305 306 0.452184 TAGACTCTACTGTGCAGCGC 59.548 55.000 0.00 0.00 0.00 5.92
306 307 1.807573 GACTCTACTGTGCAGCGCC 60.808 63.158 2.29 0.00 0.00 6.53
307 308 2.219325 GACTCTACTGTGCAGCGCCT 62.219 60.000 2.29 0.00 0.00 5.52
308 309 0.965866 ACTCTACTGTGCAGCGCCTA 60.966 55.000 2.29 0.00 0.00 3.93
309 310 0.173481 CTCTACTGTGCAGCGCCTAA 59.827 55.000 2.29 0.00 0.00 2.69
310 311 0.108804 TCTACTGTGCAGCGCCTAAC 60.109 55.000 2.29 0.00 0.00 2.34
311 312 0.389817 CTACTGTGCAGCGCCTAACA 60.390 55.000 2.29 4.99 0.00 2.41
312 313 0.669318 TACTGTGCAGCGCCTAACAC 60.669 55.000 2.29 8.33 0.00 3.32
313 314 1.960763 CTGTGCAGCGCCTAACACA 60.961 57.895 17.73 17.73 40.53 3.72
314 315 2.175184 CTGTGCAGCGCCTAACACAC 62.175 60.000 15.64 10.54 38.07 3.82
315 316 2.110006 TGCAGCGCCTAACACACA 59.890 55.556 2.29 0.00 0.00 3.72
316 317 1.960763 TGCAGCGCCTAACACACAG 60.961 57.895 2.29 0.00 0.00 3.66
317 318 2.680913 GCAGCGCCTAACACACAGG 61.681 63.158 2.29 0.00 36.16 4.00
322 323 2.031919 CCTAACACACAGGCGCCA 59.968 61.111 31.54 3.45 0.00 5.69
323 324 2.325082 CCTAACACACAGGCGCCAC 61.325 63.158 31.54 1.27 0.00 5.01
324 325 1.596752 CTAACACACAGGCGCCACA 60.597 57.895 31.54 2.61 0.00 4.17
325 326 1.841663 CTAACACACAGGCGCCACAC 61.842 60.000 31.54 0.00 0.00 3.82
326 327 2.318519 TAACACACAGGCGCCACACT 62.319 55.000 31.54 4.11 0.00 3.55
327 328 3.653009 CACACAGGCGCCACACTG 61.653 66.667 31.54 20.78 40.48 3.66
338 339 2.357396 CACACTGTGCAGCGCCTA 60.357 61.111 2.29 0.00 0.00 3.93
339 340 2.047844 ACACTGTGCAGCGCCTAG 60.048 61.111 2.29 0.00 0.00 3.02
349 350 4.740235 GCGCCTAGCTGTAAGGAG 57.260 61.111 5.13 2.79 44.04 3.69
350 351 1.817209 GCGCCTAGCTGTAAGGAGT 59.183 57.895 5.13 0.00 44.04 3.85
351 352 0.528684 GCGCCTAGCTGTAAGGAGTG 60.529 60.000 5.13 0.00 44.04 3.51
352 353 0.528684 CGCCTAGCTGTAAGGAGTGC 60.529 60.000 5.13 0.00 36.08 4.40
353 354 0.537188 GCCTAGCTGTAAGGAGTGCA 59.463 55.000 5.13 0.00 36.08 4.57
354 355 1.740718 GCCTAGCTGTAAGGAGTGCAC 60.741 57.143 9.40 9.40 36.08 4.57
355 356 1.827969 CCTAGCTGTAAGGAGTGCACT 59.172 52.381 21.88 21.88 36.08 4.40
356 357 3.024547 CCTAGCTGTAAGGAGTGCACTA 58.975 50.000 21.73 0.00 36.08 2.74
357 358 3.181485 CCTAGCTGTAAGGAGTGCACTAC 60.181 52.174 22.25 22.25 36.08 2.73
358 359 2.248248 AGCTGTAAGGAGTGCACTACA 58.752 47.619 30.47 23.13 0.00 2.74
369 370 2.856032 CACTACACTGTGCAGCGC 59.144 61.111 7.90 0.00 0.00 5.92
370 371 2.357517 ACTACACTGTGCAGCGCC 60.358 61.111 2.29 0.00 0.00 6.53
371 372 2.047844 CTACACTGTGCAGCGCCT 60.048 61.111 2.29 0.00 0.00 5.52
372 373 1.215382 CTACACTGTGCAGCGCCTA 59.785 57.895 2.29 0.00 0.00 3.93
373 374 0.389817 CTACACTGTGCAGCGCCTAA 60.390 55.000 2.29 0.00 0.00 2.69
374 375 0.669318 TACACTGTGCAGCGCCTAAC 60.669 55.000 2.29 0.00 0.00 2.34
375 376 1.669115 CACTGTGCAGCGCCTAACT 60.669 57.895 2.29 0.00 0.00 2.24
376 377 1.071471 ACTGTGCAGCGCCTAACTT 59.929 52.632 2.29 0.00 0.00 2.66
377 378 0.320374 ACTGTGCAGCGCCTAACTTA 59.680 50.000 2.29 0.00 0.00 2.24
378 379 1.270625 ACTGTGCAGCGCCTAACTTAA 60.271 47.619 2.29 0.00 0.00 1.85
379 380 1.394917 CTGTGCAGCGCCTAACTTAAG 59.605 52.381 2.29 0.00 0.00 1.85
380 381 0.727398 GTGCAGCGCCTAACTTAAGG 59.273 55.000 2.29 0.00 39.87 2.69
381 382 0.611200 TGCAGCGCCTAACTTAAGGA 59.389 50.000 2.29 0.00 39.15 3.36
382 383 1.291132 GCAGCGCCTAACTTAAGGAG 58.709 55.000 2.29 3.65 39.15 3.69
383 384 1.405661 GCAGCGCCTAACTTAAGGAGT 60.406 52.381 2.29 0.00 39.15 3.85
395 396 5.810080 ACTTAAGGAGTTGCAAGTAGAGT 57.190 39.130 6.80 4.49 33.92 3.24
396 397 5.542779 ACTTAAGGAGTTGCAAGTAGAGTG 58.457 41.667 6.80 0.00 33.92 3.51
397 398 2.464157 AGGAGTTGCAAGTAGAGTGC 57.536 50.000 6.80 0.00 42.55 4.40
401 402 4.266983 TGCAAGTAGAGTGCAGCG 57.733 55.556 0.00 0.00 46.76 5.18
402 403 2.029288 TGCAAGTAGAGTGCAGCGC 61.029 57.895 0.00 0.00 46.76 5.92
403 404 2.744768 GCAAGTAGAGTGCAGCGCC 61.745 63.158 2.29 0.00 41.80 6.53
404 405 1.079543 CAAGTAGAGTGCAGCGCCT 60.080 57.895 2.29 2.26 0.00 5.52
405 406 0.671781 CAAGTAGAGTGCAGCGCCTT 60.672 55.000 2.29 0.00 0.00 4.35
406 407 0.895530 AAGTAGAGTGCAGCGCCTTA 59.104 50.000 2.29 0.00 0.00 2.69
407 408 0.173708 AGTAGAGTGCAGCGCCTTAC 59.826 55.000 2.29 5.89 0.00 2.34
408 409 0.173708 GTAGAGTGCAGCGCCTTACT 59.826 55.000 2.29 5.65 0.00 2.24
409 410 0.173481 TAGAGTGCAGCGCCTTACTG 59.827 55.000 2.29 0.00 38.22 2.74
410 411 1.374758 GAGTGCAGCGCCTTACTGT 60.375 57.895 2.29 0.00 37.47 3.55
411 412 0.951040 GAGTGCAGCGCCTTACTGTT 60.951 55.000 2.29 0.00 37.47 3.16
412 413 1.207593 GTGCAGCGCCTTACTGTTG 59.792 57.895 2.29 0.00 37.47 3.33
413 414 1.965930 TGCAGCGCCTTACTGTTGG 60.966 57.895 2.29 0.00 37.47 3.77
414 415 2.690778 GCAGCGCCTTACTGTTGGG 61.691 63.158 2.29 0.00 37.47 4.12
415 416 1.003839 CAGCGCCTTACTGTTGGGA 60.004 57.895 2.29 0.00 0.00 4.37
416 417 1.021390 CAGCGCCTTACTGTTGGGAG 61.021 60.000 2.29 1.61 0.00 4.30
417 418 2.399356 GCGCCTTACTGTTGGGAGC 61.399 63.158 0.00 10.35 38.57 4.70
418 419 1.296715 CGCCTTACTGTTGGGAGCT 59.703 57.895 0.00 0.00 0.00 4.09
419 420 1.021390 CGCCTTACTGTTGGGAGCTG 61.021 60.000 0.00 0.00 0.00 4.24
420 421 1.308783 GCCTTACTGTTGGGAGCTGC 61.309 60.000 0.00 0.00 0.00 5.25
421 422 0.036732 CCTTACTGTTGGGAGCTGCA 59.963 55.000 7.79 0.00 0.00 4.41
422 423 1.340405 CCTTACTGTTGGGAGCTGCAT 60.340 52.381 7.79 0.00 0.00 3.96
423 424 2.092968 CCTTACTGTTGGGAGCTGCATA 60.093 50.000 7.79 0.00 0.00 3.14
424 425 3.609853 CTTACTGTTGGGAGCTGCATAA 58.390 45.455 7.79 0.00 0.00 1.90
425 426 2.584835 ACTGTTGGGAGCTGCATAAA 57.415 45.000 7.79 0.00 0.00 1.40
426 427 2.875296 ACTGTTGGGAGCTGCATAAAA 58.125 42.857 7.79 0.00 0.00 1.52
427 428 2.821969 ACTGTTGGGAGCTGCATAAAAG 59.178 45.455 7.79 8.68 0.00 2.27
428 429 2.165030 CTGTTGGGAGCTGCATAAAAGG 59.835 50.000 7.79 0.00 0.00 3.11
429 430 1.478105 GTTGGGAGCTGCATAAAAGGG 59.522 52.381 7.79 0.00 0.00 3.95
430 431 0.704076 TGGGAGCTGCATAAAAGGGT 59.296 50.000 7.79 0.00 0.00 4.34
431 432 1.340991 TGGGAGCTGCATAAAAGGGTC 60.341 52.381 7.79 0.00 0.00 4.46
432 433 1.340991 GGGAGCTGCATAAAAGGGTCA 60.341 52.381 7.79 0.00 0.00 4.02
433 434 2.019984 GGAGCTGCATAAAAGGGTCAG 58.980 52.381 0.00 0.00 0.00 3.51
435 436 0.099436 GCTGCATAAAAGGGTCAGCG 59.901 55.000 0.00 0.00 40.34 5.18
436 437 0.734889 CTGCATAAAAGGGTCAGCGG 59.265 55.000 0.00 0.00 0.00 5.52
437 438 0.037590 TGCATAAAAGGGTCAGCGGT 59.962 50.000 0.00 0.00 0.00 5.68
438 439 0.451783 GCATAAAAGGGTCAGCGGTG 59.548 55.000 8.67 8.67 0.00 4.94
439 440 1.821216 CATAAAAGGGTCAGCGGTGT 58.179 50.000 15.22 0.00 0.00 4.16
440 441 1.468520 CATAAAAGGGTCAGCGGTGTG 59.531 52.381 15.22 0.00 0.00 3.82
441 442 0.759959 TAAAAGGGTCAGCGGTGTGA 59.240 50.000 15.22 0.00 0.00 3.58
442 443 0.106918 AAAAGGGTCAGCGGTGTGAA 60.107 50.000 15.22 0.00 0.00 3.18
443 444 0.106918 AAAGGGTCAGCGGTGTGAAA 60.107 50.000 15.22 0.00 0.00 2.69
444 445 0.110486 AAGGGTCAGCGGTGTGAAAT 59.890 50.000 15.22 0.00 0.00 2.17
445 446 0.981183 AGGGTCAGCGGTGTGAAATA 59.019 50.000 15.22 0.00 0.00 1.40
446 447 1.559682 AGGGTCAGCGGTGTGAAATAT 59.440 47.619 15.22 0.00 0.00 1.28
447 448 2.026262 AGGGTCAGCGGTGTGAAATATT 60.026 45.455 15.22 0.00 0.00 1.28
448 449 2.752903 GGGTCAGCGGTGTGAAATATTT 59.247 45.455 15.22 0.00 0.00 1.40
449 450 3.192633 GGGTCAGCGGTGTGAAATATTTT 59.807 43.478 15.22 0.00 0.00 1.82
450 451 4.412207 GGTCAGCGGTGTGAAATATTTTC 58.588 43.478 15.22 0.32 0.00 2.29
451 452 4.083003 GGTCAGCGGTGTGAAATATTTTCA 60.083 41.667 15.22 2.91 0.00 2.69
452 453 5.457140 GTCAGCGGTGTGAAATATTTTCAA 58.543 37.500 15.22 0.00 0.00 2.69
453 454 5.918011 GTCAGCGGTGTGAAATATTTTCAAA 59.082 36.000 15.22 0.00 0.00 2.69
454 455 6.419413 GTCAGCGGTGTGAAATATTTTCAAAA 59.581 34.615 15.22 0.00 0.00 2.44
455 456 6.980978 TCAGCGGTGTGAAATATTTTCAAAAA 59.019 30.769 15.22 0.00 0.00 1.94
456 457 7.043059 TCAGCGGTGTGAAATATTTTCAAAAAC 60.043 33.333 15.22 4.40 0.00 2.43
457 458 6.758886 AGCGGTGTGAAATATTTTCAAAAACA 59.241 30.769 1.43 0.00 0.00 2.83
458 459 7.042791 AGCGGTGTGAAATATTTTCAAAAACAG 60.043 33.333 1.43 6.08 0.00 3.16
459 460 7.254286 GCGGTGTGAAATATTTTCAAAAACAGT 60.254 33.333 1.43 0.00 0.00 3.55
460 461 8.599774 CGGTGTGAAATATTTTCAAAAACAGTT 58.400 29.630 1.43 0.00 0.00 3.16
481 482 9.821662 ACAGTTTAGTTTATGAAATACTTTCGC 57.178 29.630 0.00 0.00 42.55 4.70
488 489 8.237267 AGTTTATGAAATACTTTCGCTTTGAGG 58.763 33.333 0.00 0.00 42.55 3.86
489 490 7.681939 TTATGAAATACTTTCGCTTTGAGGT 57.318 32.000 0.00 0.00 42.55 3.85
490 491 6.575162 ATGAAATACTTTCGCTTTGAGGTT 57.425 33.333 0.00 0.00 42.55 3.50
491 492 7.681939 ATGAAATACTTTCGCTTTGAGGTTA 57.318 32.000 0.00 0.00 42.55 2.85
492 493 7.499321 TGAAATACTTTCGCTTTGAGGTTAA 57.501 32.000 0.00 0.00 42.55 2.01
493 494 7.932335 TGAAATACTTTCGCTTTGAGGTTAAA 58.068 30.769 0.00 0.00 42.55 1.52
494 495 8.573035 TGAAATACTTTCGCTTTGAGGTTAAAT 58.427 29.630 0.00 0.00 42.55 1.40
495 496 9.406828 GAAATACTTTCGCTTTGAGGTTAAATT 57.593 29.630 0.00 0.00 0.00 1.82
496 497 9.758651 AAATACTTTCGCTTTGAGGTTAAATTT 57.241 25.926 0.00 0.00 0.00 1.82
497 498 8.742554 ATACTTTCGCTTTGAGGTTAAATTTG 57.257 30.769 0.00 0.00 0.00 2.32
498 499 6.569780 ACTTTCGCTTTGAGGTTAAATTTGT 58.430 32.000 0.00 0.00 0.00 2.83
499 500 6.695713 ACTTTCGCTTTGAGGTTAAATTTGTC 59.304 34.615 0.00 0.00 0.00 3.18
500 501 5.759506 TCGCTTTGAGGTTAAATTTGTCA 57.240 34.783 0.00 0.00 0.00 3.58
501 502 6.137794 TCGCTTTGAGGTTAAATTTGTCAA 57.862 33.333 0.00 2.44 0.00 3.18
502 503 6.744112 TCGCTTTGAGGTTAAATTTGTCAAT 58.256 32.000 0.00 0.00 0.00 2.57
503 504 7.206687 TCGCTTTGAGGTTAAATTTGTCAATT 58.793 30.769 0.00 0.00 33.72 2.32
504 505 7.381139 TCGCTTTGAGGTTAAATTTGTCAATTC 59.619 33.333 0.00 0.61 30.80 2.17
505 506 7.382218 CGCTTTGAGGTTAAATTTGTCAATTCT 59.618 33.333 0.00 0.00 30.80 2.40
506 507 8.490355 GCTTTGAGGTTAAATTTGTCAATTCTG 58.510 33.333 0.00 0.00 30.80 3.02
507 508 7.945033 TTGAGGTTAAATTTGTCAATTCTGC 57.055 32.000 0.00 0.00 30.80 4.26
508 509 6.454795 TGAGGTTAAATTTGTCAATTCTGCC 58.545 36.000 0.00 0.00 30.80 4.85
509 510 5.793817 AGGTTAAATTTGTCAATTCTGCCC 58.206 37.500 0.00 0.00 30.80 5.36
510 511 5.543790 AGGTTAAATTTGTCAATTCTGCCCT 59.456 36.000 0.00 0.00 30.80 5.19
511 512 6.043127 AGGTTAAATTTGTCAATTCTGCCCTT 59.957 34.615 0.00 0.00 30.80 3.95
512 513 6.147656 GGTTAAATTTGTCAATTCTGCCCTTG 59.852 38.462 0.00 0.00 30.80 3.61
513 514 2.818130 TTTGTCAATTCTGCCCTTGC 57.182 45.000 0.00 0.00 38.26 4.01
514 515 4.444591 AAATTTGTCAATTCTGCCCTTGCA 60.445 37.500 0.00 0.00 37.04 4.08
515 516 5.746656 AAATTTGTCAATTCTGCCCTTGCAT 60.747 36.000 0.00 0.00 38.05 3.96
581 582 1.513586 GCCCGTCTTCGTCGTGTAG 60.514 63.158 0.00 0.00 35.01 2.74
582 583 1.513586 CCCGTCTTCGTCGTGTAGC 60.514 63.158 0.00 0.00 35.01 3.58
583 584 1.208358 CCGTCTTCGTCGTGTAGCA 59.792 57.895 0.00 0.00 35.01 3.49
585 586 1.063951 CGTCTTCGTCGTGTAGCACC 61.064 60.000 0.00 0.00 0.00 5.01
586 587 0.039798 GTCTTCGTCGTGTAGCACCA 60.040 55.000 0.00 0.00 0.00 4.17
587 588 0.039798 TCTTCGTCGTGTAGCACCAC 60.040 55.000 0.00 0.00 0.00 4.16
590 591 2.019951 CGTCGTGTAGCACCACACC 61.020 63.158 9.74 0.00 44.88 4.16
591 592 1.666872 GTCGTGTAGCACCACACCC 60.667 63.158 9.74 0.00 44.88 4.61
592 593 2.736995 CGTGTAGCACCACACCCG 60.737 66.667 9.74 0.00 44.88 5.28
593 594 3.047877 GTGTAGCACCACACCCGC 61.048 66.667 5.26 0.00 42.46 6.13
594 595 4.323477 TGTAGCACCACACCCGCC 62.323 66.667 0.00 0.00 0.00 6.13
623 624 2.094417 GCACGCTGAACAATTACTCCTC 59.906 50.000 0.00 0.00 0.00 3.71
625 626 2.567615 ACGCTGAACAATTACTCCTCCT 59.432 45.455 0.00 0.00 0.00 3.69
627 628 3.368427 CGCTGAACAATTACTCCTCCTCA 60.368 47.826 0.00 0.00 0.00 3.86
628 629 3.935828 GCTGAACAATTACTCCTCCTCAC 59.064 47.826 0.00 0.00 0.00 3.51
629 630 4.563580 GCTGAACAATTACTCCTCCTCACA 60.564 45.833 0.00 0.00 0.00 3.58
630 631 4.894784 TGAACAATTACTCCTCCTCACAC 58.105 43.478 0.00 0.00 0.00 3.82
853 1182 1.345176 CGTCTCAAATTCTCGCCGC 59.655 57.895 0.00 0.00 0.00 6.53
964 1330 1.134175 CTCACCGTTGCAAACCAAAGT 59.866 47.619 0.00 0.00 46.28 2.66
967 1333 1.754226 ACCGTTGCAAACCAAAGTGAT 59.246 42.857 0.00 0.00 46.28 3.06
978 1344 1.338105 CCAAAGTGATCACCTGCTCGA 60.338 52.381 22.21 0.00 0.00 4.04
979 1345 2.625737 CAAAGTGATCACCTGCTCGAT 58.374 47.619 22.21 0.00 0.00 3.59
980 1346 3.005554 CAAAGTGATCACCTGCTCGATT 58.994 45.455 22.21 4.60 0.00 3.34
995 1361 3.786635 CTCGATTGTTGCTTAGCTAGGT 58.213 45.455 5.60 0.00 0.00 3.08
1043 1409 2.027625 CCCACGTGGCGTTCTTCTC 61.028 63.158 29.75 0.00 38.32 2.87
1215 1581 0.391130 TCAAATCCGTGCCTTCCTCG 60.391 55.000 0.00 0.00 0.00 4.63
1240 1606 1.136147 CAAGATGACAAGCGCCAGC 59.864 57.895 2.29 0.00 45.58 4.85
1596 1962 1.204062 CAACGCGACGAACTGCAAT 59.796 52.632 15.93 0.00 0.00 3.56
1875 2242 0.250945 TCAGCTCCGATATCCTCGCT 60.251 55.000 0.00 0.00 46.25 4.93
1923 2290 2.872001 GACGTGCTGTCGCTCTCG 60.872 66.667 0.00 0.00 37.96 4.04
2167 2551 1.706305 AGTCCATGTACCCGGGAAAAA 59.294 47.619 32.02 10.66 31.32 1.94
2192 2576 4.565022 GATTTGAAAAATGGCGGGAAGAA 58.435 39.130 0.00 0.00 0.00 2.52
2193 2577 3.658757 TTGAAAAATGGCGGGAAGAAG 57.341 42.857 0.00 0.00 0.00 2.85
2194 2578 1.892474 TGAAAAATGGCGGGAAGAAGG 59.108 47.619 0.00 0.00 0.00 3.46
2253 2637 1.586422 CGATGTACTGCATGAAGGGG 58.414 55.000 5.47 0.00 38.06 4.79
2295 2679 0.535102 CCGGGAAGATGGTGGTATGC 60.535 60.000 0.00 0.00 0.00 3.14
2352 2736 4.103103 GTGAAAGAAGCGGGCGGC 62.103 66.667 9.26 9.26 44.05 6.53
2463 2847 0.037790 AGGCTGTCGAGCTCAAGAAC 60.038 55.000 15.40 6.56 45.44 3.01
2631 3540 0.462937 CCGGGGTTAACATCATCGCA 60.463 55.000 8.10 0.00 0.00 5.10
2778 3687 3.089838 CACCCTTCATGGAGCCCA 58.910 61.111 0.00 0.00 38.35 5.36
3147 4062 3.450043 GACGGTCACCAACGTGGGT 62.450 63.158 9.47 9.47 43.37 4.51
3411 4327 4.265073 AGTAGAGGTGCAAATTTAGCAGG 58.735 43.478 13.32 0.00 43.63 4.85
3513 4429 5.127356 CCGATGATATTAGTAGTTCCCCTCC 59.873 48.000 0.00 0.00 0.00 4.30
3517 4433 5.773680 TGATATTAGTAGTTCCCCTCCGAAG 59.226 44.000 0.00 0.00 0.00 3.79
3531 4447 1.437986 CGAAGTAGAGCGGGGAAGG 59.562 63.158 0.00 0.00 0.00 3.46
3532 4448 1.823976 GAAGTAGAGCGGGGAAGGG 59.176 63.158 0.00 0.00 0.00 3.95
3533 4449 0.686769 GAAGTAGAGCGGGGAAGGGA 60.687 60.000 0.00 0.00 0.00 4.20
3534 4450 0.688087 AAGTAGAGCGGGGAAGGGAG 60.688 60.000 0.00 0.00 0.00 4.30
3535 4451 2.134933 GTAGAGCGGGGAAGGGAGG 61.135 68.421 0.00 0.00 0.00 4.30
3536 4452 2.322156 TAGAGCGGGGAAGGGAGGA 61.322 63.158 0.00 0.00 0.00 3.71
3537 4453 2.584873 TAGAGCGGGGAAGGGAGGAC 62.585 65.000 0.00 0.00 0.00 3.85
3538 4454 3.986116 GAGCGGGGAAGGGAGGACT 62.986 68.421 0.00 0.00 0.00 3.85
3539 4455 3.009714 GCGGGGAAGGGAGGACTT 61.010 66.667 0.00 0.00 0.00 3.01
3540 4456 2.990479 CGGGGAAGGGAGGACTTG 59.010 66.667 0.00 0.00 0.00 3.16
3541 4457 1.612442 CGGGGAAGGGAGGACTTGA 60.612 63.158 0.00 0.00 0.00 3.02
3542 4458 1.617947 CGGGGAAGGGAGGACTTGAG 61.618 65.000 0.00 0.00 0.00 3.02
3543 4459 0.547954 GGGGAAGGGAGGACTTGAGT 60.548 60.000 0.00 0.00 0.00 3.41
3544 4460 1.363246 GGGAAGGGAGGACTTGAGTT 58.637 55.000 0.00 0.00 0.00 3.01
3545 4461 2.547990 GGGAAGGGAGGACTTGAGTTA 58.452 52.381 0.00 0.00 0.00 2.24
3546 4462 2.502130 GGGAAGGGAGGACTTGAGTTAG 59.498 54.545 0.00 0.00 0.00 2.34
3547 4463 3.442076 GGAAGGGAGGACTTGAGTTAGA 58.558 50.000 0.00 0.00 0.00 2.10
3548 4464 3.449377 GGAAGGGAGGACTTGAGTTAGAG 59.551 52.174 0.00 0.00 0.00 2.43
3612 4528 6.259387 GCCCAAAATTCCAAATCATCTCAATC 59.741 38.462 0.00 0.00 0.00 2.67
3671 4587 5.928839 GTGCAACTGAGAGAAGAGAATACAA 59.071 40.000 0.00 0.00 0.00 2.41
3672 4588 6.090628 GTGCAACTGAGAGAAGAGAATACAAG 59.909 42.308 0.00 0.00 0.00 3.16
3673 4589 6.162777 GCAACTGAGAGAAGAGAATACAAGT 58.837 40.000 0.00 0.00 0.00 3.16
3674 4590 7.039714 TGCAACTGAGAGAAGAGAATACAAGTA 60.040 37.037 0.00 0.00 0.00 2.24
3675 4591 7.487829 GCAACTGAGAGAAGAGAATACAAGTAG 59.512 40.741 0.00 0.00 0.00 2.57
3682 4598 3.041946 AGAGAATACAAGTAGGCAGGGG 58.958 50.000 0.00 0.00 0.00 4.79
3753 4669 0.903942 CCACCCCCATGGATGTTTTG 59.096 55.000 15.22 1.09 43.02 2.44
3779 4700 7.225784 GGGGGCTAGTACTAAACTACTAATC 57.774 44.000 3.76 0.00 39.80 1.75
3782 4703 9.752228 GGGGCTAGTACTAAACTACTAATCTAT 57.248 37.037 3.76 0.00 39.80 1.98
3847 4775 5.449107 TTAGTCTAATCACGGATGCCTAC 57.551 43.478 0.00 0.00 0.00 3.18
3848 4776 3.567397 AGTCTAATCACGGATGCCTACT 58.433 45.455 0.00 0.00 0.00 2.57
3849 4777 4.726583 AGTCTAATCACGGATGCCTACTA 58.273 43.478 0.00 0.00 0.00 1.82
3850 4778 4.762765 AGTCTAATCACGGATGCCTACTAG 59.237 45.833 0.00 0.00 0.00 2.57
3851 4779 4.760715 GTCTAATCACGGATGCCTACTAGA 59.239 45.833 0.00 0.00 0.00 2.43
3852 4780 5.416326 GTCTAATCACGGATGCCTACTAGAT 59.584 44.000 0.00 0.00 0.00 1.98
3853 4781 6.010850 TCTAATCACGGATGCCTACTAGATT 58.989 40.000 0.00 0.00 0.00 2.40
3854 4782 4.527509 ATCACGGATGCCTACTAGATTG 57.472 45.455 0.00 0.00 0.00 2.67
3855 4783 2.628178 TCACGGATGCCTACTAGATTGG 59.372 50.000 0.00 0.00 0.00 3.16
3864 4792 5.245531 TGCCTACTAGATTGGACTTTGTTG 58.754 41.667 0.00 0.00 0.00 3.33
3865 4793 5.221843 TGCCTACTAGATTGGACTTTGTTGT 60.222 40.000 0.00 0.00 0.00 3.32
3870 4798 4.058721 AGATTGGACTTTGTTGTTTGGC 57.941 40.909 0.00 0.00 0.00 4.52
3898 4826 3.768757 TCCAAGACAATTAGCCCAAATGG 59.231 43.478 0.00 0.00 37.09 3.16
3911 4839 2.506644 CCCAAATGGCATTGATTTCCCT 59.493 45.455 14.47 0.00 31.84 4.20
3920 4848 4.202090 GGCATTGATTTCCCTTGAGTGATC 60.202 45.833 0.00 0.00 0.00 2.92
3942 4870 1.337728 ACGCATCAGACAAATCACGGA 60.338 47.619 0.00 0.00 0.00 4.69
3948 4876 2.993220 TCAGACAAATCACGGATCAACG 59.007 45.455 0.00 0.00 40.31 4.10
3953 4881 0.796312 AATCACGGATCAACGCACAC 59.204 50.000 0.00 0.00 37.37 3.82
3963 4891 0.931702 CAACGCACACGGTTGTTCTA 59.068 50.000 0.00 0.00 46.04 2.10
3978 4911 2.224549 TGTTCTATTTCCACGCCGTTTG 59.775 45.455 0.00 0.00 0.00 2.93
3980 4913 2.070783 TCTATTTCCACGCCGTTTGAC 58.929 47.619 0.00 0.00 0.00 3.18
4004 4937 2.134789 ACCTCCAATCCATCTGTTGC 57.865 50.000 0.00 0.00 0.00 4.17
4055 5573 1.718757 AATCAAGCGCTTCCATCGGC 61.719 55.000 22.21 0.00 0.00 5.54
4097 5615 1.238439 AGGTGTGCACAATCTTTCGG 58.762 50.000 23.59 0.00 0.00 4.30
4101 5619 1.266718 TGTGCACAATCTTTCGGAAGC 59.733 47.619 19.28 0.00 32.75 3.86
4107 5625 3.438087 CACAATCTTTCGGAAGCACAGAT 59.562 43.478 0.00 0.00 32.75 2.90
4124 5642 3.137728 ACAGATCCATCCATGCTTCATCA 59.862 43.478 0.00 0.00 0.00 3.07
4182 5700 0.036765 TACAAACTGGCCAGCCGTAG 60.037 55.000 33.06 19.44 39.42 3.51
4187 5705 3.665675 CTGGCCAGCCGTAGTGACC 62.666 68.421 22.33 0.00 39.42 4.02
4194 5712 2.490217 CCGTAGTGACCGGCAGAG 59.510 66.667 0.00 0.00 38.85 3.35
4225 5743 1.494721 GGGGCTGGATTTGATACTCCA 59.505 52.381 0.00 0.00 39.23 3.86
4241 5759 2.769663 ACTCCAGGTATGTATTTCGGCA 59.230 45.455 0.00 0.00 0.00 5.69
4242 5760 3.181465 ACTCCAGGTATGTATTTCGGCAG 60.181 47.826 0.00 0.00 0.00 4.85
4243 5761 1.873591 CCAGGTATGTATTTCGGCAGC 59.126 52.381 0.00 0.00 0.00 5.25
4253 5771 1.327303 TTTCGGCAGCCTTGATTGTT 58.673 45.000 10.54 0.00 0.00 2.83
4308 5828 7.436118 ACTTGTTTAAGTATGTCCTCACGTTA 58.564 34.615 0.00 0.00 45.07 3.18
4366 5886 5.582953 TCCCAAGGAGTGATGATTTTTCAT 58.417 37.500 0.00 0.00 0.00 2.57
4367 5887 6.730447 TCCCAAGGAGTGATGATTTTTCATA 58.270 36.000 0.00 0.00 0.00 2.15
4368 5888 6.603201 TCCCAAGGAGTGATGATTTTTCATAC 59.397 38.462 0.00 0.00 0.00 2.39
4369 5889 6.604795 CCCAAGGAGTGATGATTTTTCATACT 59.395 38.462 0.00 0.00 0.00 2.12
4370 5890 7.415989 CCCAAGGAGTGATGATTTTTCATACTG 60.416 40.741 0.00 0.00 0.00 2.74
4388 5908 8.785329 TCATACTGTACAAAACTGCATGAATA 57.215 30.769 0.00 0.00 37.06 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.142174 CTCCTGCGAGAAGGTTCTTTTT 58.858 45.455 0.00 0.00 38.52 1.94
9 10 2.551071 CCTCCTGCGAGAAGGTTCTTTT 60.551 50.000 0.00 0.00 38.52 2.27
10 11 1.002544 CCTCCTGCGAGAAGGTTCTTT 59.997 52.381 0.00 0.00 38.52 2.52
11 12 0.610687 CCTCCTGCGAGAAGGTTCTT 59.389 55.000 0.00 0.00 38.52 2.52
12 13 0.251832 TCCTCCTGCGAGAAGGTTCT 60.252 55.000 0.00 0.00 38.52 3.01
13 14 0.174617 CTCCTCCTGCGAGAAGGTTC 59.825 60.000 0.00 0.00 38.52 3.62
14 15 1.893919 GCTCCTCCTGCGAGAAGGTT 61.894 60.000 0.00 0.00 38.52 3.50
15 16 2.355193 GCTCCTCCTGCGAGAAGGT 61.355 63.158 0.00 0.00 38.52 3.50
16 17 2.498726 GCTCCTCCTGCGAGAAGG 59.501 66.667 0.00 0.00 38.52 3.46
54 55 1.339929 TGCACGCGTATATGGTGATCT 59.660 47.619 13.44 0.00 33.58 2.75
55 56 1.778334 TGCACGCGTATATGGTGATC 58.222 50.000 13.44 0.00 33.58 2.92
60 61 3.247411 TCATTCTTTGCACGCGTATATGG 59.753 43.478 13.44 0.00 0.00 2.74
173 174 5.073008 AGGTCAAATTTATGGTTTTTGCCCT 59.927 36.000 0.00 0.00 34.75 5.19
174 175 5.312895 AGGTCAAATTTATGGTTTTTGCCC 58.687 37.500 0.00 0.00 32.12 5.36
175 176 5.120053 CGAGGTCAAATTTATGGTTTTTGCC 59.880 40.000 0.00 0.00 31.88 4.52
176 177 5.120053 CCGAGGTCAAATTTATGGTTTTTGC 59.880 40.000 0.00 0.00 31.88 3.68
177 178 5.637387 CCCGAGGTCAAATTTATGGTTTTTG 59.363 40.000 0.00 0.00 0.00 2.44
178 179 5.279758 CCCCGAGGTCAAATTTATGGTTTTT 60.280 40.000 0.00 0.00 0.00 1.94
179 180 4.221924 CCCCGAGGTCAAATTTATGGTTTT 59.778 41.667 0.00 0.00 0.00 2.43
180 181 3.767131 CCCCGAGGTCAAATTTATGGTTT 59.233 43.478 0.00 0.00 0.00 3.27
181 182 3.245479 ACCCCGAGGTCAAATTTATGGTT 60.245 43.478 0.00 0.00 46.45 3.67
182 183 2.310647 ACCCCGAGGTCAAATTTATGGT 59.689 45.455 0.00 0.00 46.45 3.55
183 184 2.687935 CACCCCGAGGTCAAATTTATGG 59.312 50.000 0.00 0.00 46.45 2.74
184 185 3.616219 TCACCCCGAGGTCAAATTTATG 58.384 45.455 0.00 0.00 46.45 1.90
185 186 4.310022 TTCACCCCGAGGTCAAATTTAT 57.690 40.909 0.00 0.00 46.45 1.40
186 187 3.791953 TTCACCCCGAGGTCAAATTTA 57.208 42.857 0.00 0.00 46.45 1.40
187 188 2.626266 GTTTCACCCCGAGGTCAAATTT 59.374 45.455 0.00 0.00 46.45 1.82
188 189 2.158519 AGTTTCACCCCGAGGTCAAATT 60.159 45.455 0.00 0.00 46.45 1.82
189 190 1.423921 AGTTTCACCCCGAGGTCAAAT 59.576 47.619 0.00 0.00 46.45 2.32
190 191 0.841289 AGTTTCACCCCGAGGTCAAA 59.159 50.000 0.00 0.00 46.45 2.69
191 192 1.719529 TAGTTTCACCCCGAGGTCAA 58.280 50.000 0.00 0.00 46.45 3.18
192 193 1.946984 ATAGTTTCACCCCGAGGTCA 58.053 50.000 0.00 0.00 46.45 4.02
193 194 3.268330 GAAATAGTTTCACCCCGAGGTC 58.732 50.000 0.00 0.00 46.45 3.85
195 196 3.343941 TGAAATAGTTTCACCCCGAGG 57.656 47.619 1.24 0.00 44.21 4.63
227 228 9.066892 TCAGCTGAGTGAAATACTTTTAAACAT 57.933 29.630 13.74 0.00 40.53 2.71
228 229 8.342634 GTCAGCTGAGTGAAATACTTTTAAACA 58.657 33.333 18.89 0.00 40.53 2.83
229 230 7.803659 GGTCAGCTGAGTGAAATACTTTTAAAC 59.196 37.037 18.89 0.00 40.53 2.01
230 231 7.040686 GGGTCAGCTGAGTGAAATACTTTTAAA 60.041 37.037 18.89 0.00 40.53 1.52
231 232 6.430000 GGGTCAGCTGAGTGAAATACTTTTAA 59.570 38.462 18.89 0.00 40.53 1.52
232 233 5.938125 GGGTCAGCTGAGTGAAATACTTTTA 59.062 40.000 18.89 0.00 40.53 1.52
233 234 4.762251 GGGTCAGCTGAGTGAAATACTTTT 59.238 41.667 18.89 0.00 40.53 2.27
234 235 4.327680 GGGTCAGCTGAGTGAAATACTTT 58.672 43.478 18.89 0.00 40.53 2.66
235 236 3.307762 GGGGTCAGCTGAGTGAAATACTT 60.308 47.826 18.89 0.00 40.53 2.24
236 237 2.237392 GGGGTCAGCTGAGTGAAATACT 59.763 50.000 18.89 0.00 44.02 2.12
237 238 2.237392 AGGGGTCAGCTGAGTGAAATAC 59.763 50.000 18.89 2.67 0.00 1.89
238 239 2.551270 AGGGGTCAGCTGAGTGAAATA 58.449 47.619 18.89 0.00 0.00 1.40
239 240 1.366319 AGGGGTCAGCTGAGTGAAAT 58.634 50.000 18.89 0.00 0.00 2.17
240 241 2.024176 TAGGGGTCAGCTGAGTGAAA 57.976 50.000 18.89 0.00 0.00 2.69
241 242 2.024176 TTAGGGGTCAGCTGAGTGAA 57.976 50.000 18.89 4.54 0.00 3.18
242 243 1.833630 CATTAGGGGTCAGCTGAGTGA 59.166 52.381 18.89 0.00 0.00 3.41
243 244 1.556911 ACATTAGGGGTCAGCTGAGTG 59.443 52.381 18.89 9.75 0.00 3.51
244 245 1.556911 CACATTAGGGGTCAGCTGAGT 59.443 52.381 18.89 5.86 0.00 3.41
245 246 1.745141 GCACATTAGGGGTCAGCTGAG 60.745 57.143 18.89 5.13 0.00 3.35
246 247 0.253044 GCACATTAGGGGTCAGCTGA 59.747 55.000 13.74 13.74 0.00 4.26
247 248 0.035152 TGCACATTAGGGGTCAGCTG 60.035 55.000 7.63 7.63 0.00 4.24
248 249 0.254178 CTGCACATTAGGGGTCAGCT 59.746 55.000 0.00 0.00 0.00 4.24
249 250 1.379642 GCTGCACATTAGGGGTCAGC 61.380 60.000 0.00 0.69 39.82 4.26
250 251 1.091771 CGCTGCACATTAGGGGTCAG 61.092 60.000 0.00 0.00 0.00 3.51
251 252 1.078497 CGCTGCACATTAGGGGTCA 60.078 57.895 0.00 0.00 0.00 4.02
252 253 1.819632 CCGCTGCACATTAGGGGTC 60.820 63.158 0.00 0.00 41.78 4.46
253 254 2.272146 CCGCTGCACATTAGGGGT 59.728 61.111 0.00 0.00 41.78 4.95
255 256 0.463654 TTAGCCGCTGCACATTAGGG 60.464 55.000 2.16 0.00 41.13 3.53
256 257 0.657840 GTTAGCCGCTGCACATTAGG 59.342 55.000 2.16 0.00 41.13 2.69
257 258 1.328680 CTGTTAGCCGCTGCACATTAG 59.671 52.381 2.16 0.00 41.13 1.73
258 259 1.338674 ACTGTTAGCCGCTGCACATTA 60.339 47.619 2.16 0.00 41.13 1.90
259 260 0.606401 ACTGTTAGCCGCTGCACATT 60.606 50.000 2.16 0.00 41.13 2.71
260 261 0.249120 TACTGTTAGCCGCTGCACAT 59.751 50.000 2.16 0.23 41.13 3.21
261 262 0.034198 TTACTGTTAGCCGCTGCACA 59.966 50.000 2.16 5.15 41.13 4.57
262 263 0.721718 CTTACTGTTAGCCGCTGCAC 59.278 55.000 2.16 0.14 41.13 4.57
263 264 0.391130 CCTTACTGTTAGCCGCTGCA 60.391 55.000 2.16 1.20 41.13 4.41
264 265 1.706287 GCCTTACTGTTAGCCGCTGC 61.706 60.000 2.16 0.00 37.95 5.25
265 266 1.421410 CGCCTTACTGTTAGCCGCTG 61.421 60.000 2.16 0.00 0.00 5.18
266 267 1.153628 CGCCTTACTGTTAGCCGCT 60.154 57.895 0.00 0.00 0.00 5.52
267 268 2.810012 GCGCCTTACTGTTAGCCGC 61.810 63.158 6.42 6.42 0.00 6.53
268 269 0.101759 TAGCGCCTTACTGTTAGCCG 59.898 55.000 2.29 0.00 0.00 5.52
269 270 1.407979 TCTAGCGCCTTACTGTTAGCC 59.592 52.381 2.29 0.00 0.00 3.93
270 271 2.099427 AGTCTAGCGCCTTACTGTTAGC 59.901 50.000 2.29 0.00 0.00 3.09
271 272 3.628487 AGAGTCTAGCGCCTTACTGTTAG 59.372 47.826 2.29 0.00 0.00 2.34
272 273 3.618351 AGAGTCTAGCGCCTTACTGTTA 58.382 45.455 2.29 0.00 0.00 2.41
273 274 2.448453 AGAGTCTAGCGCCTTACTGTT 58.552 47.619 2.29 0.00 0.00 3.16
274 275 2.131776 AGAGTCTAGCGCCTTACTGT 57.868 50.000 2.29 0.00 0.00 3.55
275 276 3.002862 CAGTAGAGTCTAGCGCCTTACTG 59.997 52.174 2.29 10.57 0.00 2.74
276 277 3.207778 CAGTAGAGTCTAGCGCCTTACT 58.792 50.000 2.29 4.52 0.00 2.24
277 278 2.944349 ACAGTAGAGTCTAGCGCCTTAC 59.056 50.000 2.29 0.00 0.00 2.34
278 279 2.943690 CACAGTAGAGTCTAGCGCCTTA 59.056 50.000 2.29 0.00 0.00 2.69
279 280 1.746220 CACAGTAGAGTCTAGCGCCTT 59.254 52.381 2.29 0.00 0.00 4.35
280 281 1.384525 CACAGTAGAGTCTAGCGCCT 58.615 55.000 2.29 0.00 0.00 5.52
281 282 0.248702 GCACAGTAGAGTCTAGCGCC 60.249 60.000 2.29 0.00 0.00 6.53
282 283 0.452184 TGCACAGTAGAGTCTAGCGC 59.548 55.000 0.00 0.00 0.00 5.92
283 284 1.532921 GCTGCACAGTAGAGTCTAGCG 60.533 57.143 0.00 0.00 0.00 4.26
284 285 1.532921 CGCTGCACAGTAGAGTCTAGC 60.533 57.143 0.00 1.07 0.00 3.42
285 286 1.532921 GCGCTGCACAGTAGAGTCTAG 60.533 57.143 0.00 0.00 0.00 2.43
286 287 0.452184 GCGCTGCACAGTAGAGTCTA 59.548 55.000 0.00 0.00 0.00 2.59
287 288 1.214062 GCGCTGCACAGTAGAGTCT 59.786 57.895 0.00 0.00 0.00 3.24
288 289 1.807573 GGCGCTGCACAGTAGAGTC 60.808 63.158 7.64 0.00 0.00 3.36
289 290 0.965866 TAGGCGCTGCACAGTAGAGT 60.966 55.000 7.64 0.00 0.00 3.24
290 291 0.173481 TTAGGCGCTGCACAGTAGAG 59.827 55.000 7.64 0.00 0.00 2.43
291 292 0.108804 GTTAGGCGCTGCACAGTAGA 60.109 55.000 7.64 0.00 0.00 2.59
292 293 0.389817 TGTTAGGCGCTGCACAGTAG 60.390 55.000 7.64 0.00 0.00 2.57
293 294 0.669318 GTGTTAGGCGCTGCACAGTA 60.669 55.000 7.64 0.00 32.62 2.74
294 295 1.961277 GTGTTAGGCGCTGCACAGT 60.961 57.895 7.64 0.00 32.62 3.55
295 296 1.960763 TGTGTTAGGCGCTGCACAG 60.961 57.895 7.64 0.00 37.00 3.66
296 297 2.110006 TGTGTTAGGCGCTGCACA 59.890 55.556 7.64 14.28 39.21 4.57
297 298 2.175184 CTGTGTGTTAGGCGCTGCAC 62.175 60.000 7.64 11.82 0.00 4.57
298 299 1.960763 CTGTGTGTTAGGCGCTGCA 60.961 57.895 7.64 0.00 0.00 4.41
299 300 2.680913 CCTGTGTGTTAGGCGCTGC 61.681 63.158 7.64 0.00 0.00 5.25
300 301 3.566261 CCTGTGTGTTAGGCGCTG 58.434 61.111 7.64 0.00 0.00 5.18
305 306 2.031919 TGGCGCCTGTGTGTTAGG 59.968 61.111 29.70 0.00 38.39 2.69
306 307 1.596752 TGTGGCGCCTGTGTGTTAG 60.597 57.895 29.70 0.00 0.00 2.34
307 308 1.890041 GTGTGGCGCCTGTGTGTTA 60.890 57.895 29.70 0.07 0.00 2.41
308 309 3.209097 GTGTGGCGCCTGTGTGTT 61.209 61.111 29.70 0.00 0.00 3.32
309 310 4.175337 AGTGTGGCGCCTGTGTGT 62.175 61.111 29.70 4.22 0.00 3.72
310 311 3.653009 CAGTGTGGCGCCTGTGTG 61.653 66.667 29.70 16.03 0.00 3.82
311 312 4.175337 ACAGTGTGGCGCCTGTGT 62.175 61.111 29.70 21.08 40.30 3.72
320 321 3.881952 TAGGCGCTGCACAGTGTGG 62.882 63.158 24.24 10.07 40.84 4.17
321 322 2.357396 TAGGCGCTGCACAGTGTG 60.357 61.111 19.27 19.27 40.84 3.82
322 323 2.047844 CTAGGCGCTGCACAGTGT 60.048 61.111 7.64 0.00 40.84 3.55
323 324 3.494336 GCTAGGCGCTGCACAGTG 61.494 66.667 7.64 6.84 41.63 3.66
332 333 0.528684 CACTCCTTACAGCTAGGCGC 60.529 60.000 0.00 0.00 39.57 6.53
333 334 0.528684 GCACTCCTTACAGCTAGGCG 60.529 60.000 0.00 0.00 32.59 5.52
334 335 0.537188 TGCACTCCTTACAGCTAGGC 59.463 55.000 0.00 0.00 32.59 3.93
335 336 1.827969 AGTGCACTCCTTACAGCTAGG 59.172 52.381 15.25 0.00 0.00 3.02
336 337 3.444034 TGTAGTGCACTCCTTACAGCTAG 59.556 47.826 25.56 0.00 0.00 3.42
337 338 3.192844 GTGTAGTGCACTCCTTACAGCTA 59.807 47.826 25.56 0.00 44.41 3.32
338 339 2.028930 GTGTAGTGCACTCCTTACAGCT 60.029 50.000 25.56 0.00 44.41 4.24
339 340 2.338500 GTGTAGTGCACTCCTTACAGC 58.662 52.381 25.56 12.38 44.41 4.40
352 353 2.671177 GGCGCTGCACAGTGTAGTG 61.671 63.158 23.67 23.67 42.30 2.74
353 354 1.532604 TAGGCGCTGCACAGTGTAGT 61.533 55.000 18.74 3.00 40.84 2.73
354 355 0.389817 TTAGGCGCTGCACAGTGTAG 60.390 55.000 14.02 14.02 40.84 2.74
355 356 0.669318 GTTAGGCGCTGCACAGTGTA 60.669 55.000 7.64 0.00 40.84 2.90
356 357 1.961277 GTTAGGCGCTGCACAGTGT 60.961 57.895 7.64 0.00 40.84 3.55
357 358 1.230635 AAGTTAGGCGCTGCACAGTG 61.231 55.000 7.64 6.84 41.63 3.66
358 359 0.320374 TAAGTTAGGCGCTGCACAGT 59.680 50.000 7.64 0.00 0.00 3.55
359 360 1.394917 CTTAAGTTAGGCGCTGCACAG 59.605 52.381 7.64 0.00 0.00 3.66
360 361 1.438651 CTTAAGTTAGGCGCTGCACA 58.561 50.000 7.64 0.00 0.00 4.57
361 362 0.727398 CCTTAAGTTAGGCGCTGCAC 59.273 55.000 7.64 0.76 0.00 4.57
362 363 0.611200 TCCTTAAGTTAGGCGCTGCA 59.389 50.000 7.64 0.00 35.15 4.41
363 364 1.291132 CTCCTTAAGTTAGGCGCTGC 58.709 55.000 7.64 0.00 35.15 5.25
364 365 2.673368 CAACTCCTTAAGTTAGGCGCTG 59.327 50.000 7.64 0.00 46.69 5.18
365 366 2.935676 GCAACTCCTTAAGTTAGGCGCT 60.936 50.000 7.64 0.00 46.69 5.92
366 367 1.397343 GCAACTCCTTAAGTTAGGCGC 59.603 52.381 0.00 0.00 46.69 6.53
367 368 2.695359 TGCAACTCCTTAAGTTAGGCG 58.305 47.619 0.97 0.00 46.69 5.52
368 369 4.072839 ACTTGCAACTCCTTAAGTTAGGC 58.927 43.478 0.00 0.00 46.69 3.93
369 370 6.698380 TCTACTTGCAACTCCTTAAGTTAGG 58.302 40.000 0.00 0.00 46.69 2.69
370 371 7.329717 CACTCTACTTGCAACTCCTTAAGTTAG 59.670 40.741 0.00 1.30 46.69 2.34
371 372 7.152645 CACTCTACTTGCAACTCCTTAAGTTA 58.847 38.462 0.00 0.00 46.69 2.24
373 374 5.542779 CACTCTACTTGCAACTCCTTAAGT 58.457 41.667 0.00 0.00 41.10 2.24
374 375 4.390297 GCACTCTACTTGCAACTCCTTAAG 59.610 45.833 0.00 0.00 39.93 1.85
375 376 4.202315 TGCACTCTACTTGCAACTCCTTAA 60.202 41.667 0.00 0.00 46.90 1.85
376 377 3.323691 TGCACTCTACTTGCAACTCCTTA 59.676 43.478 0.00 0.00 46.90 2.69
377 378 2.104792 TGCACTCTACTTGCAACTCCTT 59.895 45.455 0.00 0.00 46.90 3.36
378 379 1.694150 TGCACTCTACTTGCAACTCCT 59.306 47.619 0.00 0.00 46.90 3.69
379 380 2.169832 TGCACTCTACTTGCAACTCC 57.830 50.000 0.00 0.00 46.90 3.85
385 386 2.744768 GGCGCTGCACTCTACTTGC 61.745 63.158 7.64 0.00 40.63 4.01
386 387 0.671781 AAGGCGCTGCACTCTACTTG 60.672 55.000 7.64 0.00 0.00 3.16
387 388 0.895530 TAAGGCGCTGCACTCTACTT 59.104 50.000 7.64 0.71 0.00 2.24
388 389 0.173708 GTAAGGCGCTGCACTCTACT 59.826 55.000 7.64 0.00 0.00 2.57
389 390 0.173708 AGTAAGGCGCTGCACTCTAC 59.826 55.000 7.64 2.12 0.00 2.59
390 391 0.173481 CAGTAAGGCGCTGCACTCTA 59.827 55.000 7.64 0.00 0.00 2.43
391 392 1.079543 CAGTAAGGCGCTGCACTCT 60.080 57.895 7.64 0.00 0.00 3.24
392 393 0.951040 AACAGTAAGGCGCTGCACTC 60.951 55.000 7.64 0.00 37.47 3.51
393 394 1.071471 AACAGTAAGGCGCTGCACT 59.929 52.632 7.64 4.83 37.47 4.40
394 395 1.207593 CAACAGTAAGGCGCTGCAC 59.792 57.895 7.64 2.20 37.47 4.57
395 396 1.965930 CCAACAGTAAGGCGCTGCA 60.966 57.895 7.64 0.00 37.47 4.41
396 397 2.690778 CCCAACAGTAAGGCGCTGC 61.691 63.158 7.64 0.00 37.47 5.25
397 398 1.003839 TCCCAACAGTAAGGCGCTG 60.004 57.895 7.64 0.00 39.67 5.18
398 399 1.296715 CTCCCAACAGTAAGGCGCT 59.703 57.895 7.64 0.00 0.00 5.92
399 400 2.399356 GCTCCCAACAGTAAGGCGC 61.399 63.158 0.00 0.00 0.00 6.53
400 401 1.021390 CAGCTCCCAACAGTAAGGCG 61.021 60.000 0.00 0.00 0.00 5.52
401 402 1.308783 GCAGCTCCCAACAGTAAGGC 61.309 60.000 0.00 0.00 0.00 4.35
402 403 0.036732 TGCAGCTCCCAACAGTAAGG 59.963 55.000 0.00 0.00 0.00 2.69
403 404 2.119801 ATGCAGCTCCCAACAGTAAG 57.880 50.000 0.00 0.00 0.00 2.34
404 405 3.712016 TTATGCAGCTCCCAACAGTAA 57.288 42.857 0.00 0.00 0.00 2.24
405 406 3.712016 TTTATGCAGCTCCCAACAGTA 57.288 42.857 0.00 0.00 0.00 2.74
406 407 2.584835 TTTATGCAGCTCCCAACAGT 57.415 45.000 0.00 0.00 0.00 3.55
407 408 2.165030 CCTTTTATGCAGCTCCCAACAG 59.835 50.000 0.00 0.00 0.00 3.16
408 409 2.170166 CCTTTTATGCAGCTCCCAACA 58.830 47.619 0.00 0.00 0.00 3.33
409 410 1.478105 CCCTTTTATGCAGCTCCCAAC 59.522 52.381 0.00 0.00 0.00 3.77
410 411 1.077005 ACCCTTTTATGCAGCTCCCAA 59.923 47.619 0.00 0.00 0.00 4.12
411 412 0.704076 ACCCTTTTATGCAGCTCCCA 59.296 50.000 0.00 0.00 0.00 4.37
412 413 1.340991 TGACCCTTTTATGCAGCTCCC 60.341 52.381 0.00 0.00 0.00 4.30
413 414 2.019984 CTGACCCTTTTATGCAGCTCC 58.980 52.381 0.00 0.00 0.00 4.70
414 415 1.403323 GCTGACCCTTTTATGCAGCTC 59.597 52.381 0.00 0.00 46.17 4.09
415 416 1.467920 GCTGACCCTTTTATGCAGCT 58.532 50.000 0.00 0.00 46.17 4.24
416 417 0.099436 CGCTGACCCTTTTATGCAGC 59.901 55.000 0.00 0.00 46.19 5.25
417 418 0.734889 CCGCTGACCCTTTTATGCAG 59.265 55.000 0.00 0.00 0.00 4.41
418 419 0.037590 ACCGCTGACCCTTTTATGCA 59.962 50.000 0.00 0.00 0.00 3.96
419 420 0.451783 CACCGCTGACCCTTTTATGC 59.548 55.000 0.00 0.00 0.00 3.14
420 421 1.468520 CACACCGCTGACCCTTTTATG 59.531 52.381 0.00 0.00 0.00 1.90
421 422 1.349688 TCACACCGCTGACCCTTTTAT 59.650 47.619 0.00 0.00 0.00 1.40
422 423 0.759959 TCACACCGCTGACCCTTTTA 59.240 50.000 0.00 0.00 0.00 1.52
423 424 0.106918 TTCACACCGCTGACCCTTTT 60.107 50.000 0.00 0.00 0.00 2.27
424 425 0.106918 TTTCACACCGCTGACCCTTT 60.107 50.000 0.00 0.00 0.00 3.11
425 426 0.110486 ATTTCACACCGCTGACCCTT 59.890 50.000 0.00 0.00 0.00 3.95
426 427 0.981183 TATTTCACACCGCTGACCCT 59.019 50.000 0.00 0.00 0.00 4.34
427 428 2.038387 ATATTTCACACCGCTGACCC 57.962 50.000 0.00 0.00 0.00 4.46
428 429 4.083003 TGAAAATATTTCACACCGCTGACC 60.083 41.667 0.10 0.00 0.00 4.02
429 430 5.041951 TGAAAATATTTCACACCGCTGAC 57.958 39.130 0.10 0.00 0.00 3.51
430 431 5.697473 TTGAAAATATTTCACACCGCTGA 57.303 34.783 0.10 0.00 0.00 4.26
431 432 6.761731 TTTTGAAAATATTTCACACCGCTG 57.238 33.333 0.10 0.00 0.00 5.18
432 433 6.758886 TGTTTTTGAAAATATTTCACACCGCT 59.241 30.769 0.10 0.00 0.00 5.52
433 434 6.938542 TGTTTTTGAAAATATTTCACACCGC 58.061 32.000 0.10 0.00 0.00 5.68
434 435 8.125728 ACTGTTTTTGAAAATATTTCACACCG 57.874 30.769 0.10 3.16 0.00 4.94
470 471 9.758651 AAATTTAACCTCAAAGCGAAAGTATTT 57.241 25.926 0.00 0.00 43.98 1.40
471 472 9.191995 CAAATTTAACCTCAAAGCGAAAGTATT 57.808 29.630 0.00 0.00 0.00 1.89
472 473 8.357402 ACAAATTTAACCTCAAAGCGAAAGTAT 58.643 29.630 0.00 0.00 0.00 2.12
473 474 7.708998 ACAAATTTAACCTCAAAGCGAAAGTA 58.291 30.769 0.00 0.00 0.00 2.24
474 475 6.569780 ACAAATTTAACCTCAAAGCGAAAGT 58.430 32.000 0.00 0.00 0.00 2.66
475 476 6.695278 TGACAAATTTAACCTCAAAGCGAAAG 59.305 34.615 0.00 0.00 0.00 2.62
476 477 6.565234 TGACAAATTTAACCTCAAAGCGAAA 58.435 32.000 0.00 0.00 0.00 3.46
477 478 6.137794 TGACAAATTTAACCTCAAAGCGAA 57.862 33.333 0.00 0.00 0.00 4.70
478 479 5.759506 TGACAAATTTAACCTCAAAGCGA 57.240 34.783 0.00 0.00 0.00 4.93
479 480 7.382218 AGAATTGACAAATTTAACCTCAAAGCG 59.618 33.333 0.00 0.00 36.10 4.68
480 481 8.490355 CAGAATTGACAAATTTAACCTCAAAGC 58.510 33.333 0.00 0.00 36.10 3.51
481 482 8.490355 GCAGAATTGACAAATTTAACCTCAAAG 58.510 33.333 0.00 0.00 36.10 2.77
482 483 7.440856 GGCAGAATTGACAAATTTAACCTCAAA 59.559 33.333 0.00 0.00 36.10 2.69
483 484 6.928492 GGCAGAATTGACAAATTTAACCTCAA 59.072 34.615 0.00 0.00 36.10 3.02
484 485 6.454795 GGCAGAATTGACAAATTTAACCTCA 58.545 36.000 0.00 0.00 36.10 3.86
485 486 5.869344 GGGCAGAATTGACAAATTTAACCTC 59.131 40.000 0.00 0.00 36.10 3.85
486 487 5.543790 AGGGCAGAATTGACAAATTTAACCT 59.456 36.000 0.00 0.00 36.10 3.50
487 488 5.793817 AGGGCAGAATTGACAAATTTAACC 58.206 37.500 0.00 0.00 36.10 2.85
488 489 6.347644 GCAAGGGCAGAATTGACAAATTTAAC 60.348 38.462 0.00 0.00 36.69 2.01
489 490 5.700373 GCAAGGGCAGAATTGACAAATTTAA 59.300 36.000 0.00 0.00 36.69 1.52
490 491 5.237048 GCAAGGGCAGAATTGACAAATTTA 58.763 37.500 0.00 0.00 36.69 1.40
491 492 4.067192 GCAAGGGCAGAATTGACAAATTT 58.933 39.130 0.00 0.00 36.69 1.82
492 493 3.667360 GCAAGGGCAGAATTGACAAATT 58.333 40.909 0.00 0.00 38.15 1.82
493 494 3.323751 GCAAGGGCAGAATTGACAAAT 57.676 42.857 0.00 0.00 40.72 2.32
494 495 2.818130 GCAAGGGCAGAATTGACAAA 57.182 45.000 0.00 0.00 40.72 2.83
507 508 2.998480 TGCCAAGCCATGCAAGGG 60.998 61.111 10.51 6.76 43.76 3.95
508 509 2.263540 GTGCCAAGCCATGCAAGG 59.736 61.111 2.86 2.86 39.57 3.61
509 510 1.080093 CAGTGCCAAGCCATGCAAG 60.080 57.895 0.00 0.00 39.57 4.01
510 511 2.575893 CCAGTGCCAAGCCATGCAA 61.576 57.895 0.00 0.00 39.57 4.08
511 512 2.992689 CCAGTGCCAAGCCATGCA 60.993 61.111 0.00 0.00 34.54 3.96
512 513 4.446413 GCCAGTGCCAAGCCATGC 62.446 66.667 0.00 0.00 0.00 4.06
513 514 2.992689 TGCCAGTGCCAAGCCATG 60.993 61.111 0.00 0.00 36.33 3.66
514 515 2.993264 GTGCCAGTGCCAAGCCAT 60.993 61.111 0.00 0.00 36.33 4.40
570 571 0.595567 GTGTGGTGCTACACGACGAA 60.596 55.000 0.00 0.00 44.05 3.85
597 598 1.852067 AATTGTTCAGCGTGCGGGAC 61.852 55.000 0.00 0.00 0.00 4.46
598 599 0.320858 TAATTGTTCAGCGTGCGGGA 60.321 50.000 0.00 0.00 0.00 5.14
625 626 3.607661 TACCTGCGCGTGGTGTGA 61.608 61.111 27.92 11.17 38.42 3.58
964 1330 2.349590 CAACAATCGAGCAGGTGATCA 58.650 47.619 0.00 0.00 0.00 2.92
967 1333 0.035317 AGCAACAATCGAGCAGGTGA 59.965 50.000 4.02 0.00 0.00 4.02
995 1361 0.623723 GTGGAGGAAACCCATGGCTA 59.376 55.000 6.09 0.00 35.91 3.93
1034 1400 2.425668 GAGAGGAAGAGGGAGAAGAACG 59.574 54.545 0.00 0.00 0.00 3.95
1043 1409 0.820871 CAACGAGGAGAGGAAGAGGG 59.179 60.000 0.00 0.00 0.00 4.30
1215 1581 0.807496 GCTTGTCATCTTGCTCCACC 59.193 55.000 0.00 0.00 0.00 4.61
1401 1767 1.301401 CACGTTGAGGCCGAGGAAA 60.301 57.895 0.00 0.00 0.00 3.13
1827 2194 2.808543 GTTGAACCAGCAGACCTTGTAG 59.191 50.000 0.00 0.00 0.00 2.74
2167 2551 2.757868 TCCCGCCATTTTTCAAATCGAT 59.242 40.909 0.00 0.00 0.00 3.59
2271 2655 2.683933 ACCATCTTCCCGGCGACT 60.684 61.111 9.30 0.00 0.00 4.18
2357 2741 2.434884 AGTTCGCGAGCACCATGG 60.435 61.111 24.99 11.19 0.00 3.66
2928 3843 1.585521 CGGCTCGATGTCGTACACC 60.586 63.158 2.04 0.10 39.21 4.16
2931 3846 2.654404 GCCGGCTCGATGTCGTAC 60.654 66.667 22.15 0.00 43.10 3.67
3147 4062 3.672447 TACGTCGAGTTGGGCGCA 61.672 61.111 10.83 0.00 0.00 6.09
3183 4098 4.109675 ACCTTGATTCCGGGCGGG 62.110 66.667 0.00 4.42 35.59 6.13
3189 4104 1.076533 CGACCGTGACCTTGATTCCG 61.077 60.000 0.00 0.00 0.00 4.30
3192 4107 1.736645 CGCGACCGTGACCTTGATT 60.737 57.895 0.00 0.00 0.00 2.57
3193 4108 2.126071 CGCGACCGTGACCTTGAT 60.126 61.111 0.00 0.00 0.00 2.57
3513 4429 1.437986 CCTTCCCCGCTCTACTTCG 59.562 63.158 0.00 0.00 0.00 3.79
3517 4433 2.134933 CCTCCCTTCCCCGCTCTAC 61.135 68.421 0.00 0.00 0.00 2.59
3528 4444 4.349365 CTCTCTAACTCAAGTCCTCCCTT 58.651 47.826 0.00 0.00 0.00 3.95
3531 4447 2.429250 GGCTCTCTAACTCAAGTCCTCC 59.571 54.545 0.00 0.00 0.00 4.30
3532 4448 3.093057 TGGCTCTCTAACTCAAGTCCTC 58.907 50.000 0.00 0.00 0.00 3.71
3533 4449 3.176924 TGGCTCTCTAACTCAAGTCCT 57.823 47.619 0.00 0.00 0.00 3.85
3534 4450 3.006967 TGTTGGCTCTCTAACTCAAGTCC 59.993 47.826 0.00 0.00 0.00 3.85
3535 4451 3.991121 GTGTTGGCTCTCTAACTCAAGTC 59.009 47.826 0.00 0.00 0.00 3.01
3536 4452 3.244249 GGTGTTGGCTCTCTAACTCAAGT 60.244 47.826 0.00 0.00 0.00 3.16
3537 4453 3.007398 AGGTGTTGGCTCTCTAACTCAAG 59.993 47.826 0.00 0.00 0.00 3.02
3538 4454 2.972713 AGGTGTTGGCTCTCTAACTCAA 59.027 45.455 0.00 0.00 0.00 3.02
3539 4455 2.300152 CAGGTGTTGGCTCTCTAACTCA 59.700 50.000 0.00 0.00 0.00 3.41
3540 4456 2.354203 CCAGGTGTTGGCTCTCTAACTC 60.354 54.545 0.00 0.00 40.87 3.01
3541 4457 1.625818 CCAGGTGTTGGCTCTCTAACT 59.374 52.381 0.00 0.00 40.87 2.24
3542 4458 2.100605 CCAGGTGTTGGCTCTCTAAC 57.899 55.000 0.00 0.00 40.87 2.34
3639 4555 3.922910 TCTCTCAGTTGCACAAGAGATG 58.077 45.455 10.53 6.61 39.37 2.90
3657 4573 5.452636 CCCTGCCTACTTGTATTCTCTTCTC 60.453 48.000 0.00 0.00 0.00 2.87
3794 4715 6.406624 GCTAATAGATAGGCCGCTGGTAAATA 60.407 42.308 0.00 0.00 31.83 1.40
3847 4775 5.222631 GCCAAACAACAAAGTCCAATCTAG 58.777 41.667 0.00 0.00 0.00 2.43
3848 4776 4.038642 GGCCAAACAACAAAGTCCAATCTA 59.961 41.667 0.00 0.00 0.00 1.98
3849 4777 3.181466 GGCCAAACAACAAAGTCCAATCT 60.181 43.478 0.00 0.00 0.00 2.40
3850 4778 3.130633 GGCCAAACAACAAAGTCCAATC 58.869 45.455 0.00 0.00 0.00 2.67
3851 4779 2.158827 GGGCCAAACAACAAAGTCCAAT 60.159 45.455 4.39 0.00 0.00 3.16
3852 4780 1.208293 GGGCCAAACAACAAAGTCCAA 59.792 47.619 4.39 0.00 0.00 3.53
3853 4781 0.827368 GGGCCAAACAACAAAGTCCA 59.173 50.000 4.39 0.00 0.00 4.02
3854 4782 0.827368 TGGGCCAAACAACAAAGTCC 59.173 50.000 2.13 0.00 0.00 3.85
3855 4783 2.093711 ACTTGGGCCAAACAACAAAGTC 60.094 45.455 21.28 0.00 0.00 3.01
3864 4792 0.673985 GTCTTGGACTTGGGCCAAAC 59.326 55.000 21.28 16.33 44.23 2.93
3865 4793 0.260230 TGTCTTGGACTTGGGCCAAA 59.740 50.000 21.28 1.71 44.23 3.28
3870 4798 2.755103 GGCTAATTGTCTTGGACTTGGG 59.245 50.000 0.00 0.00 33.15 4.12
3898 4826 4.643784 AGATCACTCAAGGGAAATCAATGC 59.356 41.667 0.00 0.00 0.00 3.56
3903 4831 3.804873 GCGTAGATCACTCAAGGGAAATC 59.195 47.826 0.00 0.00 0.00 2.17
3911 4839 3.443681 TGTCTGATGCGTAGATCACTCAA 59.556 43.478 0.00 0.00 0.00 3.02
3920 4848 2.282555 CCGTGATTTGTCTGATGCGTAG 59.717 50.000 0.00 0.00 0.00 3.51
3942 4870 0.306533 GAACAACCGTGTGCGTTGAT 59.693 50.000 7.63 0.00 38.27 2.57
3948 4876 2.550606 TGGAAATAGAACAACCGTGTGC 59.449 45.455 0.00 0.00 38.27 4.57
3953 4881 1.129811 GGCGTGGAAATAGAACAACCG 59.870 52.381 0.00 0.00 0.00 4.44
3963 4891 0.536460 AGGTCAAACGGCGTGGAAAT 60.536 50.000 15.70 3.88 0.00 2.17
3978 4911 4.080299 ACAGATGGATTGGAGGTTTAGGTC 60.080 45.833 0.00 0.00 0.00 3.85
3980 4913 4.510167 ACAGATGGATTGGAGGTTTAGG 57.490 45.455 0.00 0.00 0.00 2.69
4091 5609 2.099141 TGGATCTGTGCTTCCGAAAG 57.901 50.000 0.00 0.00 34.58 2.62
4097 5615 1.607628 GCATGGATGGATCTGTGCTTC 59.392 52.381 0.00 0.00 35.67 3.86
4101 5619 2.927028 TGAAGCATGGATGGATCTGTG 58.073 47.619 0.00 0.00 0.00 3.66
4124 5642 1.961277 CCGCTGGTCAACTTCGCTT 60.961 57.895 0.00 0.00 0.00 4.68
4170 5688 3.702048 GGTCACTACGGCTGGCCA 61.702 66.667 4.71 4.71 33.20 5.36
4182 5700 2.670148 ATTCCCCTCTGCCGGTCAC 61.670 63.158 1.90 0.00 0.00 3.67
4187 5705 3.089874 TCCCATTCCCCTCTGCCG 61.090 66.667 0.00 0.00 0.00 5.69
4194 5712 3.825623 CAGCCCCTCCCATTCCCC 61.826 72.222 0.00 0.00 0.00 4.81
4225 5743 1.768870 AGGCTGCCGAAATACATACCT 59.231 47.619 13.96 0.00 0.00 3.08
4260 5780 8.565896 AGTAGAATCAATTTGCACTGTATGAA 57.434 30.769 0.00 0.00 0.00 2.57
4261 5781 8.453320 CAAGTAGAATCAATTTGCACTGTATGA 58.547 33.333 0.00 0.00 0.00 2.15
4262 5782 8.239314 ACAAGTAGAATCAATTTGCACTGTATG 58.761 33.333 0.00 0.00 0.00 2.39
4268 5788 9.463443 ACTTAAACAAGTAGAATCAATTTGCAC 57.537 29.630 0.00 0.00 0.00 4.57
4277 5797 9.871238 TGAGGACATACTTAAACAAGTAGAATC 57.129 33.333 3.86 1.86 38.51 2.52
4278 5798 9.654663 GTGAGGACATACTTAAACAAGTAGAAT 57.345 33.333 3.86 0.00 38.51 2.40
4279 5799 7.811236 CGTGAGGACATACTTAAACAAGTAGAA 59.189 37.037 3.86 0.00 38.51 2.10
4280 5800 7.040201 ACGTGAGGACATACTTAAACAAGTAGA 60.040 37.037 0.00 0.00 38.51 2.59
4281 5801 7.088905 ACGTGAGGACATACTTAAACAAGTAG 58.911 38.462 0.00 0.09 38.51 2.57
4282 5802 6.985117 ACGTGAGGACATACTTAAACAAGTA 58.015 36.000 0.00 0.10 39.35 2.24
4366 5886 7.971183 TGTATTCATGCAGTTTTGTACAGTA 57.029 32.000 0.00 0.00 0.00 2.74
4367 5887 6.875948 TGTATTCATGCAGTTTTGTACAGT 57.124 33.333 0.00 0.00 0.00 3.55
4368 5888 6.306356 GCTTGTATTCATGCAGTTTTGTACAG 59.694 38.462 5.48 0.00 42.06 2.74
4369 5889 6.148948 GCTTGTATTCATGCAGTTTTGTACA 58.851 36.000 5.48 0.00 42.06 2.90
4370 5890 6.617289 GCTTGTATTCATGCAGTTTTGTAC 57.383 37.500 5.48 0.00 42.06 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.