Multiple sequence alignment - TraesCS4D01G305200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G305200 chr4D 100.000 5214 0 0 1 5214 473818530 473813317 0.000000e+00 9629.0
1 TraesCS4D01G305200 chr4D 89.744 546 55 1 1 546 88909787 88909243 0.000000e+00 697.0
2 TraesCS4D01G305200 chr4D 96.226 53 2 0 5162 5214 6901331 6901279 2.590000e-13 87.9
3 TraesCS4D01G305200 chr4A 95.245 2208 71 17 2303 4506 680375191 680373014 0.000000e+00 3465.0
4 TraesCS4D01G305200 chr4A 89.697 1582 95 22 763 2310 680376885 680375338 0.000000e+00 1956.0
5 TraesCS4D01G305200 chr4A 92.857 322 13 3 4778 5099 680372676 680372365 4.760000e-125 459.0
6 TraesCS4D01G305200 chr4A 89.362 329 35 0 218 546 501713731 501713403 1.040000e-111 414.0
7 TraesCS4D01G305200 chr4A 89.855 69 4 3 4502 4569 33564750 33564816 9.300000e-13 86.1
8 TraesCS4D01G305200 chr4B 95.528 1610 54 9 2910 4515 596377118 596375523 0.000000e+00 2558.0
9 TraesCS4D01G305200 chr4B 90.588 1700 87 33 658 2309 596380028 596378354 0.000000e+00 2185.0
10 TraesCS4D01G305200 chr4B 96.367 633 17 2 2303 2929 596378206 596377574 0.000000e+00 1037.0
11 TraesCS4D01G305200 chr4B 88.300 547 60 3 1 546 125701851 125701308 0.000000e+00 652.0
12 TraesCS4D01G305200 chr4B 94.262 244 5 4 4864 5099 596375363 596375121 1.070000e-96 364.0
13 TraesCS4D01G305200 chr4B 95.833 96 4 0 4640 4735 87405130 87405225 6.990000e-34 156.0
14 TraesCS4D01G305200 chr4B 100.000 28 0 0 4731 4758 596375447 596375420 9.000000e-03 52.8
15 TraesCS4D01G305200 chr3A 97.441 547 14 0 1 547 57265619 57266165 0.000000e+00 933.0
16 TraesCS4D01G305200 chr3A 94.118 85 4 1 561 644 57266149 57266233 1.520000e-25 128.0
17 TraesCS4D01G305200 chr3A 94.915 59 2 1 4504 4562 11682843 11682900 2.000000e-14 91.6
18 TraesCS4D01G305200 chr3A 94.915 59 2 1 4504 4562 11708225 11708282 2.000000e-14 91.6
19 TraesCS4D01G305200 chrUn 97.258 547 15 0 1 547 376394036 376394582 0.000000e+00 928.0
20 TraesCS4D01G305200 chrUn 95.294 85 3 1 561 644 376394566 376394650 3.280000e-27 134.0
21 TraesCS4D01G305200 chrUn 96.875 32 0 1 4751 4781 307844144 307844113 9.000000e-03 52.8
22 TraesCS4D01G305200 chr5A 97.258 547 15 0 1 547 4036447 4036993 0.000000e+00 928.0
23 TraesCS4D01G305200 chr5A 95.098 102 5 0 4640 4741 467377465 467377566 1.500000e-35 161.0
24 TraesCS4D01G305200 chr5A 95.294 85 3 1 561 644 4036977 4037061 3.280000e-27 134.0
25 TraesCS4D01G305200 chr5A 96.296 54 2 0 5161 5214 26686520 26686467 7.190000e-14 89.8
26 TraesCS4D01G305200 chr6A 97.075 547 16 0 1 547 615390592 615390046 0.000000e+00 922.0
27 TraesCS4D01G305200 chr6A 93.000 100 7 0 4640 4739 170017779 170017878 4.210000e-31 147.0
28 TraesCS4D01G305200 chr6A 95.294 85 3 1 561 644 615390062 615389978 3.280000e-27 134.0
29 TraesCS4D01G305200 chr7D 88.776 392 43 1 1 392 546124943 546125333 3.650000e-131 479.0
30 TraesCS4D01G305200 chr7D 91.958 286 22 1 1 286 553408093 553407809 2.930000e-107 399.0
31 TraesCS4D01G305200 chr7D 93.269 104 6 1 4640 4742 617094245 617094142 9.040000e-33 152.0
32 TraesCS4D01G305200 chr7A 88.852 305 21 4 1 304 628860705 628860997 3.840000e-96 363.0
33 TraesCS4D01G305200 chr7A 96.364 55 2 0 5160 5214 110944168 110944114 2.000000e-14 91.6
34 TraesCS4D01G305200 chr7A 94.915 59 2 1 4502 4560 603560783 603560840 2.000000e-14 91.6
35 TraesCS4D01G305200 chr7A 96.226 53 2 0 5162 5214 563822703 563822651 2.590000e-13 87.9
36 TraesCS4D01G305200 chr7A 88.525 61 5 1 5156 5214 403189417 403189357 7.240000e-09 73.1
37 TraesCS4D01G305200 chr5D 94.118 102 6 0 4640 4741 365693316 365693417 6.990000e-34 156.0
38 TraesCS4D01G305200 chr7B 95.789 95 4 0 4640 4734 683101479 683101573 2.510000e-33 154.0
39 TraesCS4D01G305200 chr7B 95.161 62 2 1 4502 4563 6079495 6079555 4.300000e-16 97.1
40 TraesCS4D01G305200 chr7B 96.296 54 2 0 5161 5214 228389173 228389226 7.190000e-14 89.8
41 TraesCS4D01G305200 chr7B 92.593 54 4 0 5161 5214 228390236 228390183 1.560000e-10 78.7
42 TraesCS4D01G305200 chr3D 95.789 95 4 0 4640 4734 536331126 536331032 2.510000e-33 154.0
43 TraesCS4D01G305200 chr3D 98.214 56 0 1 4499 4553 361165296 361165351 4.300000e-16 97.1
44 TraesCS4D01G305200 chr3D 93.548 62 2 2 4503 4563 71512858 71512918 2.000000e-14 91.6
45 TraesCS4D01G305200 chr3D 98.077 52 1 0 4502 4553 613073402 613073453 2.000000e-14 91.6
46 TraesCS4D01G305200 chr3D 94.340 53 3 0 5162 5214 209674727 209674779 1.200000e-11 82.4
47 TraesCS4D01G305200 chr3B 94.737 95 5 0 4640 4734 457026255 457026161 1.170000e-31 148.0
48 TraesCS4D01G305200 chr1D 92.000 100 8 0 4640 4739 97921474 97921573 1.960000e-29 141.0
49 TraesCS4D01G305200 chr6D 93.750 64 3 1 4502 4565 356602673 356602735 1.550000e-15 95.3
50 TraesCS4D01G305200 chr6D 96.364 55 1 1 4502 4555 199867838 199867892 7.190000e-14 89.8
51 TraesCS4D01G305200 chr2B 95.082 61 1 2 4503 4562 691994747 691994688 1.550000e-15 95.3
52 TraesCS4D01G305200 chr6B 92.727 55 4 0 5160 5214 672134932 672134878 4.330000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G305200 chr4D 473813317 473818530 5213 True 9629.00 9629 100.000000 1 5214 1 chr4D.!!$R3 5213
1 TraesCS4D01G305200 chr4D 88909243 88909787 544 True 697.00 697 89.744000 1 546 1 chr4D.!!$R2 545
2 TraesCS4D01G305200 chr4A 680372365 680376885 4520 True 1960.00 3465 92.599667 763 5099 3 chr4A.!!$R2 4336
3 TraesCS4D01G305200 chr4B 596375121 596380028 4907 True 1239.36 2558 95.349000 658 5099 5 chr4B.!!$R2 4441
4 TraesCS4D01G305200 chr4B 125701308 125701851 543 True 652.00 652 88.300000 1 546 1 chr4B.!!$R1 545
5 TraesCS4D01G305200 chr3A 57265619 57266233 614 False 530.50 933 95.779500 1 644 2 chr3A.!!$F3 643
6 TraesCS4D01G305200 chrUn 376394036 376394650 614 False 531.00 928 96.276000 1 644 2 chrUn.!!$F1 643
7 TraesCS4D01G305200 chr5A 4036447 4037061 614 False 531.00 928 96.276000 1 644 2 chr5A.!!$F2 643
8 TraesCS4D01G305200 chr6A 615389978 615390592 614 True 528.00 922 96.184500 1 644 2 chr6A.!!$R1 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
988 993 0.036483 TATTCAGCGCTGCAAGGTCA 60.036 50.0 32.44 10.82 0.0 4.02 F
1758 1803 0.179032 AATTCGACCGGGCATGCATA 60.179 50.0 21.36 0.00 0.0 3.14 F
1759 1804 0.884704 ATTCGACCGGGCATGCATAC 60.885 55.0 21.36 8.12 0.0 2.39 F
3057 3746 0.935196 GAGGGTTGTATAAAGGCGCG 59.065 55.0 0.00 0.00 0.0 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1992 2039 0.251916 TCTCCAACGCCACCATTAGG 59.748 55.0 0.0 0.0 42.21 2.69 R
3393 4082 0.106819 ACCTGAATCATGCCTCCTGC 60.107 55.0 0.0 0.0 41.77 4.85 R
3490 4179 3.571590 CAATCTAGAGGGCTGGAGTACT 58.428 50.0 0.0 0.0 34.94 2.73 R
4687 5474 0.040958 GTTTCAGACAGCTTGCCGTG 60.041 55.0 0.0 0.0 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
387 388 7.113658 TCTTGCTATAGAAAGAACCGAGATT 57.886 36.000 19.31 0.00 36.79 2.40
396 397 4.559862 AAGAACCGAGATTGACCATCTT 57.440 40.909 0.00 0.00 42.92 2.40
413 414 0.606401 CTTCATGAAGGTGGCACCGT 60.606 55.000 29.76 27.62 44.90 4.83
464 465 1.496429 CCAAAGATACCAGCCTCCCAT 59.504 52.381 0.00 0.00 0.00 4.00
644 646 3.703001 CCAAGTCTGGTCCACAAGTAT 57.297 47.619 0.00 0.00 38.00 2.12
645 647 3.338249 CCAAGTCTGGTCCACAAGTATG 58.662 50.000 0.00 0.00 38.00 2.39
646 648 3.338249 CAAGTCTGGTCCACAAGTATGG 58.662 50.000 0.00 0.00 41.57 2.74
647 649 1.909302 AGTCTGGTCCACAAGTATGGG 59.091 52.381 0.00 0.00 40.49 4.00
648 650 1.906574 GTCTGGTCCACAAGTATGGGA 59.093 52.381 0.00 0.00 40.49 4.37
649 651 1.906574 TCTGGTCCACAAGTATGGGAC 59.093 52.381 0.00 0.00 41.99 4.46
650 652 1.909302 CTGGTCCACAAGTATGGGACT 59.091 52.381 9.63 0.00 42.19 3.85
652 654 2.714250 TGGTCCACAAGTATGGGACTTT 59.286 45.455 9.63 0.00 46.79 2.66
653 655 3.081804 GGTCCACAAGTATGGGACTTTG 58.918 50.000 9.63 0.00 46.79 2.77
654 656 2.488153 GTCCACAAGTATGGGACTTTGC 59.512 50.000 0.00 0.00 46.79 3.68
655 657 2.107378 TCCACAAGTATGGGACTTTGCA 59.893 45.455 0.00 0.00 46.79 4.08
656 658 3.091545 CCACAAGTATGGGACTTTGCAT 58.908 45.455 0.00 0.00 46.79 3.96
657 659 3.511146 CCACAAGTATGGGACTTTGCATT 59.489 43.478 0.00 0.00 46.79 3.56
658 660 4.021192 CCACAAGTATGGGACTTTGCATTT 60.021 41.667 0.00 0.00 46.79 2.32
659 661 5.511202 CCACAAGTATGGGACTTTGCATTTT 60.511 40.000 0.00 0.00 46.79 1.82
660 662 5.990996 CACAAGTATGGGACTTTGCATTTTT 59.009 36.000 0.00 0.00 46.79 1.94
684 686 1.398692 TGGAAGGCAGTGGTTGTTTC 58.601 50.000 0.00 0.00 0.00 2.78
744 746 1.735571 CCTACCCGTTGTTTCATTCGG 59.264 52.381 0.00 0.00 42.22 4.30
793 795 4.704833 CGCCCCCGATAGCCCATG 62.705 72.222 0.00 0.00 36.29 3.66
810 813 2.422519 CCATGGACATCCCCTTTCTCTG 60.423 54.545 5.56 0.00 34.29 3.35
811 814 0.620556 TGGACATCCCCTTTCTCTGC 59.379 55.000 0.00 0.00 34.29 4.26
812 815 0.915364 GGACATCCCCTTTCTCTGCT 59.085 55.000 0.00 0.00 0.00 4.24
816 819 1.140652 CATCCCCTTTCTCTGCTCTCC 59.859 57.143 0.00 0.00 0.00 3.71
817 820 0.117140 TCCCCTTTCTCTGCTCTCCA 59.883 55.000 0.00 0.00 0.00 3.86
829 834 1.977544 CTCTCCAACCGGACGACCT 60.978 63.158 9.46 0.00 35.91 3.85
896 901 1.228154 ACTCGGCGCTTTCCCTTTT 60.228 52.632 7.64 0.00 0.00 2.27
897 902 0.822121 ACTCGGCGCTTTCCCTTTTT 60.822 50.000 7.64 0.00 0.00 1.94
900 905 1.292223 GGCGCTTTCCCTTTTTCCC 59.708 57.895 7.64 0.00 0.00 3.97
902 907 1.185618 GCGCTTTCCCTTTTTCCCCT 61.186 55.000 0.00 0.00 0.00 4.79
903 908 0.888619 CGCTTTCCCTTTTTCCCCTC 59.111 55.000 0.00 0.00 0.00 4.30
904 909 0.888619 GCTTTCCCTTTTTCCCCTCG 59.111 55.000 0.00 0.00 0.00 4.63
905 910 1.546998 GCTTTCCCTTTTTCCCCTCGA 60.547 52.381 0.00 0.00 0.00 4.04
906 911 2.437413 CTTTCCCTTTTTCCCCTCGAG 58.563 52.381 5.13 5.13 0.00 4.04
907 912 0.037734 TTCCCTTTTTCCCCTCGAGC 59.962 55.000 6.99 0.00 0.00 5.03
908 913 1.745489 CCCTTTTTCCCCTCGAGCG 60.745 63.158 6.99 0.00 0.00 5.03
909 914 2.399356 CCTTTTTCCCCTCGAGCGC 61.399 63.158 6.99 0.00 0.00 5.92
910 915 2.359478 TTTTTCCCCTCGAGCGCC 60.359 61.111 6.99 0.00 0.00 6.53
911 916 4.752879 TTTTCCCCTCGAGCGCCG 62.753 66.667 6.99 8.02 40.25 6.46
983 988 1.819928 TTTCCTATTCAGCGCTGCAA 58.180 45.000 32.44 25.00 0.00 4.08
985 990 0.462581 TCCTATTCAGCGCTGCAAGG 60.463 55.000 32.44 31.47 0.00 3.61
986 991 0.745845 CCTATTCAGCGCTGCAAGGT 60.746 55.000 32.44 16.97 0.00 3.50
988 993 0.036483 TATTCAGCGCTGCAAGGTCA 60.036 50.000 32.44 10.82 0.00 4.02
994 999 3.368571 GCTGCAAGGTCACCTGCC 61.369 66.667 13.72 2.00 32.13 4.85
1044 1058 3.070018 CAAGGAATACATCGCTGGATCC 58.930 50.000 4.20 4.20 0.00 3.36
1132 1147 1.079503 CTTCTCCGCTTCCTTTTCCG 58.920 55.000 0.00 0.00 0.00 4.30
1181 1196 2.135933 CTCGCCGGGTAATTTGATCTC 58.864 52.381 2.18 0.00 0.00 2.75
1209 1224 2.165437 TCCAGTGCTTTGGTTGTGTTTC 59.835 45.455 6.90 0.00 39.35 2.78
1210 1225 2.184448 CAGTGCTTTGGTTGTGTTTCG 58.816 47.619 0.00 0.00 0.00 3.46
1211 1226 1.816224 AGTGCTTTGGTTGTGTTTCGT 59.184 42.857 0.00 0.00 0.00 3.85
1212 1227 3.011119 AGTGCTTTGGTTGTGTTTCGTA 58.989 40.909 0.00 0.00 0.00 3.43
1213 1228 3.630312 AGTGCTTTGGTTGTGTTTCGTAT 59.370 39.130 0.00 0.00 0.00 3.06
1214 1229 3.728718 GTGCTTTGGTTGTGTTTCGTATG 59.271 43.478 0.00 0.00 0.00 2.39
1215 1230 2.724174 GCTTTGGTTGTGTTTCGTATGC 59.276 45.455 0.00 0.00 0.00 3.14
1216 1231 3.550030 GCTTTGGTTGTGTTTCGTATGCT 60.550 43.478 0.00 0.00 0.00 3.79
1217 1232 4.319911 GCTTTGGTTGTGTTTCGTATGCTA 60.320 41.667 0.00 0.00 0.00 3.49
1218 1233 5.619086 GCTTTGGTTGTGTTTCGTATGCTAT 60.619 40.000 0.00 0.00 0.00 2.97
1219 1234 6.402766 GCTTTGGTTGTGTTTCGTATGCTATA 60.403 38.462 0.00 0.00 0.00 1.31
1220 1235 7.618502 TTTGGTTGTGTTTCGTATGCTATAT 57.381 32.000 0.00 0.00 0.00 0.86
1308 1340 1.967319 ACACAAGCGAAGTTGGACAT 58.033 45.000 0.00 0.00 0.00 3.06
1345 1377 5.405935 AAACCAGAATTGAAGCCCATTAC 57.594 39.130 0.00 0.00 0.00 1.89
1346 1378 4.046286 ACCAGAATTGAAGCCCATTACA 57.954 40.909 0.00 0.00 0.00 2.41
1453 1486 1.627864 ACGGGCCTAAAATTGCTGTT 58.372 45.000 0.84 0.00 0.00 3.16
1497 1530 7.318401 AGGGGGTATTGACAGGTAATTAGATA 58.682 38.462 0.00 0.00 0.00 1.98
1672 1711 3.625764 TGATATTACCGGCTTTTGAGTGC 59.374 43.478 0.00 0.00 0.00 4.40
1709 1754 3.485216 GGCATTAGTCGTGTTCAATTCCG 60.485 47.826 0.00 0.00 0.00 4.30
1729 1774 3.502211 CCGAATTCAGCTGGTTGTACTTT 59.498 43.478 15.13 0.00 0.00 2.66
1737 1782 2.479275 GCTGGTTGTACTTTCCGTCTTC 59.521 50.000 0.00 0.00 0.00 2.87
1758 1803 0.179032 AATTCGACCGGGCATGCATA 60.179 50.000 21.36 0.00 0.00 3.14
1759 1804 0.884704 ATTCGACCGGGCATGCATAC 60.885 55.000 21.36 8.12 0.00 2.39
1762 1807 1.152963 GACCGGGCATGCATACCTT 60.153 57.895 21.36 0.67 0.00 3.50
1807 1852 9.305925 CAAGCTTTTTATCTTCTTTGAGTTTGT 57.694 29.630 0.00 0.00 0.00 2.83
1872 1919 8.635328 CACTTCATCCAAAAATGATCATATCCA 58.365 33.333 9.04 0.00 35.65 3.41
1941 1988 6.545666 TCTGCTTCACAATTAAACTCTTTGGA 59.454 34.615 0.00 0.00 0.00 3.53
1992 2039 4.986659 ACCGTCATACAGTAGTGTGTTTTC 59.013 41.667 13.66 0.00 37.99 2.29
1999 2046 7.822334 TCATACAGTAGTGTGTTTTCCTAATGG 59.178 37.037 13.66 0.00 37.99 3.16
2072 2119 2.762327 CAAACAAGGCATTGCTCCCTAT 59.238 45.455 11.69 0.00 40.27 2.57
2129 2176 7.202526 CAGGTGTTTGTGTCACTTTATGATTT 58.797 34.615 4.27 0.00 40.28 2.17
2134 2188 8.128582 TGTTTGTGTCACTTTATGATTTGTCTC 58.871 33.333 4.27 0.00 40.28 3.36
2176 2230 3.763897 GTGATACTGGCAAACTGGGAAAT 59.236 43.478 0.00 0.00 0.00 2.17
2285 2339 6.553953 TGTTTTCCTGTGCATATACTAGGA 57.446 37.500 0.00 0.00 35.84 2.94
2622 2836 6.480981 AGAGAACAAAATGAAATTGGCAACTG 59.519 34.615 0.00 0.00 36.10 3.16
2814 3028 5.543714 ACAGCATTTTCATTGCATCTTTCA 58.456 33.333 0.00 0.00 42.62 2.69
2957 3646 7.448748 ACTGAAAACCGCAATAGATTAGTTT 57.551 32.000 0.00 0.00 0.00 2.66
3057 3746 0.935196 GAGGGTTGTATAAAGGCGCG 59.065 55.000 0.00 0.00 0.00 6.86
3139 3828 6.773685 ACAAGCCAAACAATTACTACAGGTAA 59.226 34.615 0.00 0.00 43.49 2.85
3364 4053 2.559440 GTCAGTCCTGCATCAATCTCC 58.441 52.381 0.00 0.00 0.00 3.71
3392 4081 8.495361 TTTTTAGAGTTGTTAGCAAGTACACA 57.505 30.769 0.00 0.00 38.30 3.72
3393 4082 7.709269 TTTAGAGTTGTTAGCAAGTACACAG 57.291 36.000 0.00 0.00 38.30 3.66
3490 4179 1.202639 GGATGTGATGTATGCGACCCA 60.203 52.381 0.00 0.00 0.00 4.51
3783 4472 5.946377 GGCAAAAGATATCGGGATAGGAATT 59.054 40.000 0.00 0.00 0.00 2.17
3966 4655 0.867753 CTCAGTCGAGCCGAAATCCG 60.868 60.000 0.00 0.00 37.72 4.18
4050 4739 8.558973 AGATAGATATATTGCCTTTGCTTGAC 57.441 34.615 0.00 0.00 38.71 3.18
4057 4746 1.593265 CCTTTGCTTGACCATGGCC 59.407 57.895 13.04 0.00 0.00 5.36
4262 4951 1.377690 TTACCTGCTTCATTCCCCCA 58.622 50.000 0.00 0.00 0.00 4.96
4438 5130 6.072508 TGTTTTCATGATTAACTGCTCTCACC 60.073 38.462 17.22 0.00 0.00 4.02
4444 5136 3.492102 TTAACTGCTCTCACCTTGCTT 57.508 42.857 0.00 0.00 0.00 3.91
4506 5202 7.571025 AGTTAGGGTTTTCTTTGAGAAGTACA 58.429 34.615 0.00 0.00 35.37 2.90
4507 5203 8.050930 AGTTAGGGTTTTCTTTGAGAAGTACAA 58.949 33.333 0.00 0.00 35.37 2.41
4508 5204 8.680001 GTTAGGGTTTTCTTTGAGAAGTACAAA 58.320 33.333 0.00 0.00 35.37 2.83
4521 5217 9.880157 TTGAGAAGTACAAAGTTAGTACAAAGT 57.120 29.630 6.30 0.00 43.24 2.66
4522 5218 9.880157 TGAGAAGTACAAAGTTAGTACAAAGTT 57.120 29.630 6.30 0.00 43.24 2.66
4524 5220 9.880157 AGAAGTACAAAGTTAGTACAAAGTTGA 57.120 29.630 6.30 0.00 43.24 3.18
4526 5222 9.662947 AAGTACAAAGTTAGTACAAAGTTGAGT 57.337 29.630 6.30 0.00 43.24 3.41
4527 5223 9.310716 AGTACAAAGTTAGTACAAAGTTGAGTC 57.689 33.333 6.30 0.00 43.24 3.36
4528 5224 9.090692 GTACAAAGTTAGTACAAAGTTGAGTCA 57.909 33.333 0.00 0.00 41.08 3.41
4529 5225 7.971455 ACAAAGTTAGTACAAAGTTGAGTCAC 58.029 34.615 0.00 0.00 0.00 3.67
4530 5226 7.822822 ACAAAGTTAGTACAAAGTTGAGTCACT 59.177 33.333 0.00 0.00 0.00 3.41
4531 5227 8.665685 CAAAGTTAGTACAAAGTTGAGTCACTT 58.334 33.333 0.00 0.00 38.74 3.16
4532 5228 9.880157 AAAGTTAGTACAAAGTTGAGTCACTTA 57.120 29.630 0.00 0.00 35.87 2.24
4538 5234 8.621286 AGTACAAAGTTGAGTCACTTATTTTGG 58.379 33.333 12.94 0.78 35.87 3.28
4539 5235 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
4540 5236 6.605594 ACAAAGTTGAGTCACTTATTTTGGGA 59.394 34.615 12.94 0.00 35.87 4.37
4541 5237 7.287696 ACAAAGTTGAGTCACTTATTTTGGGAT 59.712 33.333 12.94 0.00 35.87 3.85
4542 5238 6.824305 AGTTGAGTCACTTATTTTGGGATG 57.176 37.500 0.00 0.00 0.00 3.51
4543 5239 5.711976 AGTTGAGTCACTTATTTTGGGATGG 59.288 40.000 0.00 0.00 0.00 3.51
4544 5240 5.512942 TGAGTCACTTATTTTGGGATGGA 57.487 39.130 0.00 0.00 0.00 3.41
4545 5241 5.500234 TGAGTCACTTATTTTGGGATGGAG 58.500 41.667 0.00 0.00 0.00 3.86
4546 5242 4.860022 AGTCACTTATTTTGGGATGGAGG 58.140 43.478 0.00 0.00 0.00 4.30
4547 5243 3.954258 GTCACTTATTTTGGGATGGAGGG 59.046 47.826 0.00 0.00 0.00 4.30
4548 5244 3.855599 TCACTTATTTTGGGATGGAGGGA 59.144 43.478 0.00 0.00 0.00 4.20
4551 5247 5.043762 ACTTATTTTGGGATGGAGGGAGTA 58.956 41.667 0.00 0.00 0.00 2.59
4567 5263 6.239345 GGAGGGAGTATATGGTTAGTGTTCTG 60.239 46.154 0.00 0.00 0.00 3.02
4570 5266 6.281405 GGAGTATATGGTTAGTGTTCTGTGG 58.719 44.000 0.00 0.00 0.00 4.17
4581 5277 4.277476 AGTGTTCTGTGGTTGGAATGAAA 58.723 39.130 0.00 0.00 0.00 2.69
4588 5284 2.962421 GTGGTTGGAATGAAAGTTGGGA 59.038 45.455 0.00 0.00 0.00 4.37
4599 5295 9.671279 GGAATGAAAGTTGGGATTTTCAATAAT 57.329 29.630 4.06 0.00 42.40 1.28
4627 5414 9.463902 AGTACTGTATCTGTTAGTGTTCTATGT 57.536 33.333 0.00 0.00 0.00 2.29
4628 5415 9.504710 GTACTGTATCTGTTAGTGTTCTATGTG 57.495 37.037 0.00 0.00 0.00 3.21
4641 5428 8.853077 AGTGTTCTATGTGATTGAAAGAATCA 57.147 30.769 0.00 0.00 35.85 2.57
4642 5429 9.458727 AGTGTTCTATGTGATTGAAAGAATCAT 57.541 29.630 0.00 0.00 38.71 2.45
4669 5456 9.483916 TTTTATCAGACGTTTTAGACATTCAGA 57.516 29.630 0.00 0.00 0.00 3.27
4670 5457 6.952935 ATCAGACGTTTTAGACATTCAGAC 57.047 37.500 0.00 0.00 0.00 3.51
4671 5458 5.838529 TCAGACGTTTTAGACATTCAGACA 58.161 37.500 0.00 0.00 0.00 3.41
4672 5459 5.690409 TCAGACGTTTTAGACATTCAGACAC 59.310 40.000 0.00 0.00 0.00 3.67
4673 5460 5.692204 CAGACGTTTTAGACATTCAGACACT 59.308 40.000 0.00 0.00 0.00 3.55
4674 5461 5.692204 AGACGTTTTAGACATTCAGACACTG 59.308 40.000 0.00 0.00 0.00 3.66
4675 5462 5.357257 ACGTTTTAGACATTCAGACACTGT 58.643 37.500 0.00 0.00 32.61 3.55
4676 5463 5.815740 ACGTTTTAGACATTCAGACACTGTT 59.184 36.000 0.00 0.00 32.61 3.16
4677 5464 6.129393 CGTTTTAGACATTCAGACACTGTTG 58.871 40.000 0.00 0.00 32.61 3.33
4678 5465 6.019075 CGTTTTAGACATTCAGACACTGTTGA 60.019 38.462 0.00 0.00 32.61 3.18
4679 5466 7.465379 CGTTTTAGACATTCAGACACTGTTGAA 60.465 37.037 8.36 8.36 37.68 2.69
4680 5467 7.857734 TTTAGACATTCAGACACTGTTGAAA 57.142 32.000 9.43 0.00 36.93 2.69
4681 5468 7.857734 TTAGACATTCAGACACTGTTGAAAA 57.142 32.000 9.43 0.76 36.93 2.29
4695 5482 3.684103 TTGAAAACAGTACACGGCAAG 57.316 42.857 0.00 0.00 0.00 4.01
4696 5483 1.332375 TGAAAACAGTACACGGCAAGC 59.668 47.619 0.00 0.00 0.00 4.01
4697 5484 1.602377 GAAAACAGTACACGGCAAGCT 59.398 47.619 0.00 0.00 0.00 3.74
4698 5485 0.944386 AAACAGTACACGGCAAGCTG 59.056 50.000 0.00 0.00 0.00 4.24
4699 5486 0.179056 AACAGTACACGGCAAGCTGT 60.179 50.000 0.00 0.00 41.51 4.40
4700 5487 0.600255 ACAGTACACGGCAAGCTGTC 60.600 55.000 3.02 0.00 35.78 3.51
4701 5488 0.319900 CAGTACACGGCAAGCTGTCT 60.320 55.000 3.02 0.00 32.44 3.41
4702 5489 0.319900 AGTACACGGCAAGCTGTCTG 60.320 55.000 3.02 0.00 32.44 3.51
4703 5490 0.319555 GTACACGGCAAGCTGTCTGA 60.320 55.000 3.02 0.00 32.44 3.27
4704 5491 0.391228 TACACGGCAAGCTGTCTGAA 59.609 50.000 3.02 0.00 32.44 3.02
4705 5492 0.463654 ACACGGCAAGCTGTCTGAAA 60.464 50.000 3.02 0.00 32.44 2.69
4706 5493 0.040958 CACGGCAAGCTGTCTGAAAC 60.041 55.000 3.02 0.00 32.44 2.78
4707 5494 1.205064 CGGCAAGCTGTCTGAAACG 59.795 57.895 0.00 0.00 0.00 3.60
4708 5495 1.498865 CGGCAAGCTGTCTGAAACGT 61.499 55.000 0.00 0.00 0.00 3.99
4709 5496 0.235926 GGCAAGCTGTCTGAAACGTC 59.764 55.000 0.00 0.00 0.00 4.34
4710 5497 1.221414 GCAAGCTGTCTGAAACGTCT 58.779 50.000 0.00 0.00 0.00 4.18
4711 5498 1.599542 GCAAGCTGTCTGAAACGTCTT 59.400 47.619 0.00 0.00 0.00 3.01
4712 5499 2.800544 GCAAGCTGTCTGAAACGTCTTA 59.199 45.455 0.00 0.00 0.00 2.10
4713 5500 3.433615 GCAAGCTGTCTGAAACGTCTTAT 59.566 43.478 0.00 0.00 0.00 1.73
4714 5501 4.625742 GCAAGCTGTCTGAAACGTCTTATA 59.374 41.667 0.00 0.00 0.00 0.98
4715 5502 5.120208 GCAAGCTGTCTGAAACGTCTTATAA 59.880 40.000 0.00 0.00 0.00 0.98
4716 5503 6.347402 GCAAGCTGTCTGAAACGTCTTATAAA 60.347 38.462 0.00 0.00 0.00 1.40
4717 5504 7.572759 CAAGCTGTCTGAAACGTCTTATAAAA 58.427 34.615 0.00 0.00 0.00 1.52
4718 5505 7.724305 AGCTGTCTGAAACGTCTTATAAAAA 57.276 32.000 0.00 0.00 0.00 1.94
4719 5506 7.573627 AGCTGTCTGAAACGTCTTATAAAAAC 58.426 34.615 0.00 0.00 0.00 2.43
4720 5507 7.225931 AGCTGTCTGAAACGTCTTATAAAAACA 59.774 33.333 0.00 0.00 0.00 2.83
4721 5508 7.853929 GCTGTCTGAAACGTCTTATAAAAACAA 59.146 33.333 0.00 0.00 0.00 2.83
4722 5509 9.710979 CTGTCTGAAACGTCTTATAAAAACAAA 57.289 29.630 0.00 0.00 0.00 2.83
4723 5510 9.493206 TGTCTGAAACGTCTTATAAAAACAAAC 57.507 29.630 0.00 0.00 0.00 2.93
4724 5511 8.667204 GTCTGAAACGTCTTATAAAAACAAACG 58.333 33.333 0.00 0.00 35.00 3.60
4725 5512 7.851963 TCTGAAACGTCTTATAAAAACAAACGG 59.148 33.333 0.00 0.00 33.26 4.44
4726 5513 7.692088 TGAAACGTCTTATAAAAACAAACGGA 58.308 30.769 0.00 0.00 33.26 4.69
4727 5514 7.851963 TGAAACGTCTTATAAAAACAAACGGAG 59.148 33.333 0.00 0.00 33.26 4.63
4728 5515 6.232139 ACGTCTTATAAAAACAAACGGAGG 57.768 37.500 0.00 0.00 33.26 4.30
4729 5516 5.179929 ACGTCTTATAAAAACAAACGGAGGG 59.820 40.000 0.00 0.00 33.26 4.30
4763 5633 8.961294 TGTTCGTTCAATCTAAACTACTACTC 57.039 34.615 0.00 0.00 0.00 2.59
4764 5634 8.025445 TGTTCGTTCAATCTAAACTACTACTCC 58.975 37.037 0.00 0.00 0.00 3.85
4765 5635 7.093322 TCGTTCAATCTAAACTACTACTCCC 57.907 40.000 0.00 0.00 0.00 4.30
4766 5636 6.888632 TCGTTCAATCTAAACTACTACTCCCT 59.111 38.462 0.00 0.00 0.00 4.20
4767 5637 7.066766 TCGTTCAATCTAAACTACTACTCCCTC 59.933 40.741 0.00 0.00 0.00 4.30
4768 5638 7.490840 GTTCAATCTAAACTACTACTCCCTCC 58.509 42.308 0.00 0.00 0.00 4.30
4769 5639 5.826737 TCAATCTAAACTACTACTCCCTCCG 59.173 44.000 0.00 0.00 0.00 4.63
4770 5640 4.851639 TCTAAACTACTACTCCCTCCGT 57.148 45.455 0.00 0.00 0.00 4.69
4771 5641 5.184892 TCTAAACTACTACTCCCTCCGTT 57.815 43.478 0.00 0.00 0.00 4.44
4772 5642 5.574188 TCTAAACTACTACTCCCTCCGTTT 58.426 41.667 0.00 0.00 0.00 3.60
4774 5644 3.446442 ACTACTACTCCCTCCGTTTCA 57.554 47.619 0.00 0.00 0.00 2.69
4775 5645 3.771216 ACTACTACTCCCTCCGTTTCAA 58.229 45.455 0.00 0.00 0.00 2.69
4776 5646 4.154942 ACTACTACTCCCTCCGTTTCAAA 58.845 43.478 0.00 0.00 0.00 2.69
4802 5698 0.533755 GGGGCCGATCATGAAGTGAG 60.534 60.000 0.00 0.00 40.92 3.51
4825 5721 4.422073 ACCAAGAAGTGTTCTCATGTCA 57.578 40.909 0.00 0.00 39.61 3.58
4827 5723 4.999950 ACCAAGAAGTGTTCTCATGTCATC 59.000 41.667 0.00 0.00 39.61 2.92
4838 5734 5.598416 TCTCATGTCATCGTAAACAGGAT 57.402 39.130 0.00 0.00 35.85 3.24
4912 5808 9.225436 TCATATGTAGTCATACTTTTTGTGCAA 57.775 29.630 1.90 0.00 39.03 4.08
4916 5812 7.812648 TGTAGTCATACTTTTTGTGCAATACC 58.187 34.615 0.00 0.00 32.75 2.73
4917 5813 6.892658 AGTCATACTTTTTGTGCAATACCA 57.107 33.333 0.00 0.00 0.00 3.25
4965 5867 1.203052 CACTCATCAAATGCACCCACC 59.797 52.381 0.00 0.00 0.00 4.61
5044 5955 1.278985 ACTCATCAAATGCCTCACCGA 59.721 47.619 0.00 0.00 0.00 4.69
5046 5957 1.278985 TCATCAAATGCCTCACCGACT 59.721 47.619 0.00 0.00 0.00 4.18
5047 5958 1.667724 CATCAAATGCCTCACCGACTC 59.332 52.381 0.00 0.00 0.00 3.36
5048 5959 0.684535 TCAAATGCCTCACCGACTCA 59.315 50.000 0.00 0.00 0.00 3.41
5049 5960 0.798776 CAAATGCCTCACCGACTCAC 59.201 55.000 0.00 0.00 0.00 3.51
5050 5961 0.321653 AAATGCCTCACCGACTCACC 60.322 55.000 0.00 0.00 0.00 4.02
5051 5962 2.507110 AATGCCTCACCGACTCACCG 62.507 60.000 0.00 0.00 0.00 4.94
5052 5963 3.681835 GCCTCACCGACTCACCGT 61.682 66.667 0.00 0.00 0.00 4.83
5053 5964 2.567049 CCTCACCGACTCACCGTC 59.433 66.667 0.00 0.00 39.33 4.79
5054 5965 2.567049 CTCACCGACTCACCGTCC 59.433 66.667 0.00 0.00 39.56 4.79
5055 5966 2.203379 TCACCGACTCACCGTCCA 60.203 61.111 0.00 0.00 39.56 4.02
5056 5967 2.201436 CTCACCGACTCACCGTCCAG 62.201 65.000 0.00 0.00 39.56 3.86
5057 5968 2.114625 ACCGACTCACCGTCCAGA 59.885 61.111 0.00 0.00 39.56 3.86
5058 5969 1.529948 ACCGACTCACCGTCCAGAA 60.530 57.895 0.00 0.00 39.56 3.02
5059 5970 1.080705 CCGACTCACCGTCCAGAAC 60.081 63.158 0.00 0.00 39.56 3.01
5060 5971 1.658114 CGACTCACCGTCCAGAACA 59.342 57.895 0.00 0.00 39.56 3.18
5099 6010 2.479275 CTCGTGAATCATGCTGCCATAG 59.521 50.000 0.00 0.00 0.00 2.23
5100 6011 1.534163 CGTGAATCATGCTGCCATAGG 59.466 52.381 0.00 0.00 0.00 2.57
5110 6021 4.071374 GCCATAGGCGCAAAAACG 57.929 55.556 10.83 0.00 39.62 3.60
5111 6022 1.504446 GCCATAGGCGCAAAAACGA 59.496 52.632 10.83 0.00 39.62 3.85
5112 6023 0.109504 GCCATAGGCGCAAAAACGAA 60.110 50.000 10.83 0.00 39.62 3.85
5113 6024 1.895051 CCATAGGCGCAAAAACGAAG 58.105 50.000 10.83 0.00 34.06 3.79
5114 6025 1.466950 CCATAGGCGCAAAAACGAAGA 59.533 47.619 10.83 0.00 34.06 2.87
5115 6026 2.476185 CCATAGGCGCAAAAACGAAGAG 60.476 50.000 10.83 0.00 34.06 2.85
5116 6027 1.873698 TAGGCGCAAAAACGAAGAGT 58.126 45.000 10.83 0.00 34.06 3.24
5117 6028 1.873698 AGGCGCAAAAACGAAGAGTA 58.126 45.000 10.83 0.00 34.06 2.59
5118 6029 1.529865 AGGCGCAAAAACGAAGAGTAC 59.470 47.619 10.83 0.00 34.06 2.73
5119 6030 1.262151 GGCGCAAAAACGAAGAGTACA 59.738 47.619 10.83 0.00 34.06 2.90
5120 6031 2.095919 GGCGCAAAAACGAAGAGTACAT 60.096 45.455 10.83 0.00 34.06 2.29
5121 6032 3.153735 GCGCAAAAACGAAGAGTACATC 58.846 45.455 0.30 0.00 34.06 3.06
5122 6033 3.363575 GCGCAAAAACGAAGAGTACATCA 60.364 43.478 0.30 0.00 34.06 3.07
5123 6034 4.669197 GCGCAAAAACGAAGAGTACATCAT 60.669 41.667 0.30 0.00 34.06 2.45
5124 6035 5.015733 CGCAAAAACGAAGAGTACATCATC 58.984 41.667 0.00 0.00 34.06 2.92
5125 6036 5.389411 CGCAAAAACGAAGAGTACATCATCA 60.389 40.000 0.00 0.00 34.06 3.07
5126 6037 6.370593 GCAAAAACGAAGAGTACATCATCAA 58.629 36.000 0.00 0.00 0.00 2.57
5127 6038 6.855914 GCAAAAACGAAGAGTACATCATCAAA 59.144 34.615 0.00 0.00 0.00 2.69
5128 6039 7.538678 GCAAAAACGAAGAGTACATCATCAAAT 59.461 33.333 0.00 0.00 0.00 2.32
5129 6040 9.398170 CAAAAACGAAGAGTACATCATCAAATT 57.602 29.630 0.00 0.00 0.00 1.82
5130 6041 9.612620 AAAAACGAAGAGTACATCATCAAATTC 57.387 29.630 0.00 0.00 0.00 2.17
5131 6042 7.905604 AACGAAGAGTACATCATCAAATTCA 57.094 32.000 0.00 0.00 0.00 2.57
5132 6043 8.498054 AACGAAGAGTACATCATCAAATTCAT 57.502 30.769 0.00 0.00 0.00 2.57
5133 6044 8.136057 ACGAAGAGTACATCATCAAATTCATC 57.864 34.615 0.00 0.00 0.00 2.92
5134 6045 7.984050 ACGAAGAGTACATCATCAAATTCATCT 59.016 33.333 0.00 0.00 0.00 2.90
5135 6046 9.468532 CGAAGAGTACATCATCAAATTCATCTA 57.531 33.333 0.00 0.00 0.00 1.98
5137 6048 8.830201 AGAGTACATCATCAAATTCATCTAGC 57.170 34.615 0.00 0.00 0.00 3.42
5138 6049 8.649591 AGAGTACATCATCAAATTCATCTAGCT 58.350 33.333 0.00 0.00 0.00 3.32
5139 6050 8.830201 AGTACATCATCAAATTCATCTAGCTC 57.170 34.615 0.00 0.00 0.00 4.09
5140 6051 8.427276 AGTACATCATCAAATTCATCTAGCTCA 58.573 33.333 0.00 0.00 0.00 4.26
5141 6052 7.493743 ACATCATCAAATTCATCTAGCTCAC 57.506 36.000 0.00 0.00 0.00 3.51
5142 6053 7.052248 ACATCATCAAATTCATCTAGCTCACA 58.948 34.615 0.00 0.00 0.00 3.58
5143 6054 6.915544 TCATCAAATTCATCTAGCTCACAC 57.084 37.500 0.00 0.00 0.00 3.82
5144 6055 6.408869 TCATCAAATTCATCTAGCTCACACA 58.591 36.000 0.00 0.00 0.00 3.72
5145 6056 6.880529 TCATCAAATTCATCTAGCTCACACAA 59.119 34.615 0.00 0.00 0.00 3.33
5146 6057 7.555195 TCATCAAATTCATCTAGCTCACACAAT 59.445 33.333 0.00 0.00 0.00 2.71
5147 6058 7.080353 TCAAATTCATCTAGCTCACACAATG 57.920 36.000 0.00 0.00 0.00 2.82
5148 6059 5.496133 AATTCATCTAGCTCACACAATGC 57.504 39.130 0.00 0.00 0.00 3.56
5149 6060 3.615224 TCATCTAGCTCACACAATGCA 57.385 42.857 0.00 0.00 0.00 3.96
5150 6061 3.528532 TCATCTAGCTCACACAATGCAG 58.471 45.455 0.00 0.00 0.00 4.41
5151 6062 2.391616 TCTAGCTCACACAATGCAGG 57.608 50.000 0.00 0.00 0.00 4.85
5152 6063 1.625315 TCTAGCTCACACAATGCAGGT 59.375 47.619 0.00 0.00 0.00 4.00
5153 6064 1.736126 CTAGCTCACACAATGCAGGTG 59.264 52.381 17.10 17.10 41.95 4.00
5154 6065 0.109153 AGCTCACACAATGCAGGTGA 59.891 50.000 23.48 17.14 39.53 4.02
5155 6066 0.953727 GCTCACACAATGCAGGTGAA 59.046 50.000 23.48 12.35 40.67 3.18
5156 6067 1.542915 GCTCACACAATGCAGGTGAAT 59.457 47.619 23.48 3.93 40.67 2.57
5157 6068 2.029649 GCTCACACAATGCAGGTGAATT 60.030 45.455 23.48 3.29 40.67 2.17
5158 6069 3.553508 GCTCACACAATGCAGGTGAATTT 60.554 43.478 23.48 2.98 40.67 1.82
5159 6070 4.624015 CTCACACAATGCAGGTGAATTTT 58.376 39.130 23.48 2.65 40.67 1.82
5160 6071 4.370049 TCACACAATGCAGGTGAATTTTG 58.630 39.130 23.48 13.07 38.50 2.44
5161 6072 3.495377 CACACAATGCAGGTGAATTTTGG 59.505 43.478 23.48 4.45 39.53 3.28
5162 6073 3.387374 ACACAATGCAGGTGAATTTTGGA 59.613 39.130 23.48 0.00 39.53 3.53
5163 6074 3.991773 CACAATGCAGGTGAATTTTGGAG 59.008 43.478 14.36 0.00 38.54 3.86
5164 6075 3.642848 ACAATGCAGGTGAATTTTGGAGT 59.357 39.130 7.15 0.00 0.00 3.85
5165 6076 3.947910 ATGCAGGTGAATTTTGGAGTG 57.052 42.857 0.00 0.00 0.00 3.51
5166 6077 2.942804 TGCAGGTGAATTTTGGAGTGA 58.057 42.857 0.00 0.00 0.00 3.41
5167 6078 3.295093 TGCAGGTGAATTTTGGAGTGAA 58.705 40.909 0.00 0.00 0.00 3.18
5168 6079 3.896888 TGCAGGTGAATTTTGGAGTGAAT 59.103 39.130 0.00 0.00 0.00 2.57
5169 6080 4.344679 TGCAGGTGAATTTTGGAGTGAATT 59.655 37.500 0.00 0.00 0.00 2.17
5170 6081 4.687483 GCAGGTGAATTTTGGAGTGAATTG 59.313 41.667 0.00 0.00 0.00 2.32
5171 6082 5.739935 GCAGGTGAATTTTGGAGTGAATTGT 60.740 40.000 0.00 0.00 0.00 2.71
5172 6083 5.693104 CAGGTGAATTTTGGAGTGAATTGTG 59.307 40.000 0.00 0.00 0.00 3.33
5173 6084 5.598005 AGGTGAATTTTGGAGTGAATTGTGA 59.402 36.000 0.00 0.00 0.00 3.58
5174 6085 6.098124 AGGTGAATTTTGGAGTGAATTGTGAA 59.902 34.615 0.00 0.00 0.00 3.18
5175 6086 6.760770 GGTGAATTTTGGAGTGAATTGTGAAA 59.239 34.615 0.00 0.00 0.00 2.69
5176 6087 7.279758 GGTGAATTTTGGAGTGAATTGTGAAAA 59.720 33.333 0.00 0.00 0.00 2.29
5177 6088 8.663911 GTGAATTTTGGAGTGAATTGTGAAAAA 58.336 29.630 0.00 0.00 0.00 1.94
5178 6089 8.663911 TGAATTTTGGAGTGAATTGTGAAAAAC 58.336 29.630 0.00 0.00 0.00 2.43
5179 6090 6.976636 TTTTGGAGTGAATTGTGAAAAACC 57.023 33.333 0.00 0.00 0.00 3.27
5180 6091 5.667539 TTGGAGTGAATTGTGAAAAACCA 57.332 34.783 0.00 0.00 0.00 3.67
5181 6092 5.004922 TGGAGTGAATTGTGAAAAACCAC 57.995 39.130 0.00 0.00 37.55 4.16
5182 6093 4.142049 TGGAGTGAATTGTGAAAAACCACC 60.142 41.667 0.00 0.00 36.26 4.61
5183 6094 4.142049 GGAGTGAATTGTGAAAAACCACCA 60.142 41.667 0.00 0.00 36.26 4.17
5184 6095 4.754322 AGTGAATTGTGAAAAACCACCAC 58.246 39.130 0.00 0.00 36.26 4.16
5185 6096 4.221703 AGTGAATTGTGAAAAACCACCACA 59.778 37.500 0.00 0.00 38.83 4.17
5186 6097 5.104982 AGTGAATTGTGAAAAACCACCACAT 60.105 36.000 0.00 0.00 40.06 3.21
5187 6098 5.584251 GTGAATTGTGAAAAACCACCACATT 59.416 36.000 0.00 0.00 40.06 2.71
5188 6099 5.583854 TGAATTGTGAAAAACCACCACATTG 59.416 36.000 0.00 0.00 40.06 2.82
5189 6100 4.808414 TTGTGAAAAACCACCACATTGA 57.192 36.364 0.00 0.00 40.06 2.57
5190 6101 4.808414 TGTGAAAAACCACCACATTGAA 57.192 36.364 0.00 0.00 36.07 2.69
5191 6102 4.753233 TGTGAAAAACCACCACATTGAAG 58.247 39.130 0.00 0.00 36.07 3.02
5192 6103 3.555547 GTGAAAAACCACCACATTGAAGC 59.444 43.478 0.00 0.00 0.00 3.86
5193 6104 2.507339 AAAACCACCACATTGAAGCG 57.493 45.000 0.00 0.00 0.00 4.68
5194 6105 1.398692 AAACCACCACATTGAAGCGT 58.601 45.000 0.00 0.00 0.00 5.07
5195 6106 2.264005 AACCACCACATTGAAGCGTA 57.736 45.000 0.00 0.00 0.00 4.42
5196 6107 1.808411 ACCACCACATTGAAGCGTAG 58.192 50.000 0.00 0.00 0.00 3.51
5197 6108 1.086696 CCACCACATTGAAGCGTAGG 58.913 55.000 0.00 0.00 0.00 3.18
5198 6109 1.610624 CCACCACATTGAAGCGTAGGT 60.611 52.381 0.00 0.00 44.60 3.08
5207 6118 3.478780 AGCGTAGGTTTGCAGGGA 58.521 55.556 0.00 0.00 27.67 4.20
5208 6119 1.758592 AGCGTAGGTTTGCAGGGAA 59.241 52.632 0.00 0.00 27.67 3.97
5209 6120 0.321653 AGCGTAGGTTTGCAGGGAAG 60.322 55.000 0.00 0.00 27.67 3.46
5210 6121 0.321298 GCGTAGGTTTGCAGGGAAGA 60.321 55.000 0.00 0.00 0.00 2.87
5211 6122 1.439679 CGTAGGTTTGCAGGGAAGAC 58.560 55.000 0.00 0.00 0.00 3.01
5212 6123 1.002087 CGTAGGTTTGCAGGGAAGACT 59.998 52.381 0.00 0.00 0.00 3.24
5213 6124 2.701107 GTAGGTTTGCAGGGAAGACTC 58.299 52.381 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 2.537730 GCGGAATCAGATTCGCTTCAAC 60.538 50.000 22.34 7.57 40.17 3.18
75 76 3.059325 GGATTGAAGCGGAATCAGATTCG 60.059 47.826 15.65 12.18 40.17 3.34
179 180 3.574614 GCCGCACAATGTAAGTTCATTT 58.425 40.909 0.00 0.00 36.10 2.32
396 397 0.179004 AAACGGTGCCACCTTCATGA 60.179 50.000 12.94 0.00 35.66 3.07
413 414 5.123186 CGGAGGCAAGTAACACATAATGAAA 59.877 40.000 0.00 0.00 0.00 2.69
567 568 7.803279 GGATAGATCCGGTTCAGTTATTTTT 57.197 36.000 14.83 0.00 37.19 1.94
596 597 2.941720 GGATCTCATTGACCTTCACTGC 59.058 50.000 0.00 0.00 28.52 4.40
661 663 2.183679 ACAACCACTGCCTTCCAAAAA 58.816 42.857 0.00 0.00 0.00 1.94
662 664 1.859302 ACAACCACTGCCTTCCAAAA 58.141 45.000 0.00 0.00 0.00 2.44
663 665 1.859302 AACAACCACTGCCTTCCAAA 58.141 45.000 0.00 0.00 0.00 3.28
664 666 1.754226 GAAACAACCACTGCCTTCCAA 59.246 47.619 0.00 0.00 0.00 3.53
665 667 1.064017 AGAAACAACCACTGCCTTCCA 60.064 47.619 0.00 0.00 0.00 3.53
666 668 1.338020 CAGAAACAACCACTGCCTTCC 59.662 52.381 0.00 0.00 0.00 3.46
667 669 2.033424 GTCAGAAACAACCACTGCCTTC 59.967 50.000 0.00 0.00 0.00 3.46
668 670 2.024414 GTCAGAAACAACCACTGCCTT 58.976 47.619 0.00 0.00 0.00 4.35
684 686 2.782192 CTCGAGCGGTTTTATACGTCAG 59.218 50.000 0.00 0.00 0.00 3.51
709 711 4.142038 CGGGTAGGATTAGATTTTTGGGG 58.858 47.826 0.00 0.00 0.00 4.96
793 795 0.915364 AGCAGAGAAAGGGGATGTCC 59.085 55.000 0.00 0.00 0.00 4.02
829 834 2.668185 TTTCTGTTTCGGCAGGCGGA 62.668 55.000 17.49 4.39 37.12 5.54
892 897 2.399356 GGCGCTCGAGGGGAAAAAG 61.399 63.158 28.26 0.00 0.00 2.27
994 999 1.524621 CTAAGCCAGCCATCCCACG 60.525 63.158 0.00 0.00 0.00 4.94
1065 1079 4.324991 AAAGGGTGGCCGACGACC 62.325 66.667 0.00 0.00 0.00 4.79
1132 1147 2.681848 CACCAATCAGCAAGAGATGGAC 59.318 50.000 15.90 0.00 38.71 4.02
1181 1196 0.313043 CCAAAGCACTGGAGCACAAG 59.687 55.000 0.00 0.00 38.96 3.16
1214 1229 1.293924 CTGCGGGCATAGCATATAGC 58.706 55.000 0.00 0.00 44.26 2.97
1215 1230 1.293924 GCTGCGGGCATAGCATATAG 58.706 55.000 0.00 0.00 44.26 1.31
1216 1231 0.460109 CGCTGCGGGCATAGCATATA 60.460 55.000 15.40 0.00 44.26 0.86
1217 1232 1.742880 CGCTGCGGGCATAGCATAT 60.743 57.895 15.40 0.00 44.26 1.78
1218 1233 2.357396 CGCTGCGGGCATAGCATA 60.357 61.111 15.40 0.00 44.26 3.14
1219 1234 4.552365 ACGCTGCGGGCATAGCAT 62.552 61.111 26.95 0.00 44.26 3.79
1220 1235 4.776322 AACGCTGCGGGCATAGCA 62.776 61.111 26.95 4.83 42.99 3.49
1308 1340 5.906113 TCTGGTTTTAAAAGCTGTGTCAA 57.094 34.783 25.67 10.29 37.31 3.18
1345 1377 6.384224 TCGTCACTAGTTGTTTACCTATGTG 58.616 40.000 0.00 0.00 0.00 3.21
1346 1378 6.579666 TCGTCACTAGTTGTTTACCTATGT 57.420 37.500 0.00 0.00 0.00 2.29
1453 1486 6.129179 CCCCCTCTCATTTAAATTCTTAGCA 58.871 40.000 0.00 0.00 0.00 3.49
1497 1530 5.049405 GCAACTAGTAACAACAGCAGTCATT 60.049 40.000 0.00 0.00 0.00 2.57
1502 1535 3.364366 GCAGCAACTAGTAACAACAGCAG 60.364 47.826 0.00 0.00 0.00 4.24
1543 1576 6.554334 TCTCAAGCAAGTAATACCAAACAC 57.446 37.500 0.00 0.00 0.00 3.32
1643 1682 6.153680 TCAAAAGCCGGTAATATCAACCAAAT 59.846 34.615 1.90 0.00 36.78 2.32
1672 1711 5.057149 ACTAATGCCAGGTATTTCTAAGCG 58.943 41.667 8.23 0.00 0.00 4.68
1709 1754 4.378459 CGGAAAGTACAACCAGCTGAATTC 60.378 45.833 17.39 0.00 0.00 2.17
1729 1774 1.402968 CCGGTCGAATTAGAAGACGGA 59.597 52.381 16.96 0.00 37.39 4.69
1737 1782 0.813610 TGCATGCCCGGTCGAATTAG 60.814 55.000 16.68 0.00 0.00 1.73
1758 1803 3.698040 GCATGTCCTGAATCAATGAAGGT 59.302 43.478 0.00 0.00 0.00 3.50
1759 1804 3.067742 GGCATGTCCTGAATCAATGAAGG 59.932 47.826 0.00 0.00 0.00 3.46
1762 1807 3.369242 TGGCATGTCCTGAATCAATGA 57.631 42.857 0.00 0.00 35.26 2.57
1941 1988 3.864789 AATGAACAACTGGTCAGGACT 57.135 42.857 3.49 0.00 46.01 3.85
1992 2039 0.251916 TCTCCAACGCCACCATTAGG 59.748 55.000 0.00 0.00 42.21 2.69
1999 2046 2.351738 CCTCAAAAATCTCCAACGCCAC 60.352 50.000 0.00 0.00 0.00 5.01
2089 2136 1.283029 CACCTGGAACATGGACCTCAT 59.717 52.381 0.00 0.00 38.20 2.90
2091 2138 0.693049 ACACCTGGAACATGGACCTC 59.307 55.000 0.00 0.00 38.20 3.85
2129 2176 0.541392 ATACCATTGGCAGCGAGACA 59.459 50.000 1.54 0.00 0.00 3.41
2134 2188 2.109538 CTCGCATACCATTGGCAGCG 62.110 60.000 23.10 23.10 40.20 5.18
2221 2275 6.494893 TTCTCATACACTGGCATAAACAAC 57.505 37.500 0.00 0.00 0.00 3.32
2613 2827 5.392767 TGTTAACTGAAAACAGTTGCCAA 57.607 34.783 20.89 8.62 44.26 4.52
2622 2836 7.041372 TCCTAGCATGAACTGTTAACTGAAAAC 60.041 37.037 18.21 7.47 0.00 2.43
2846 3060 5.584649 TCCGTTAACAAGATGAATGATGACC 59.415 40.000 6.39 0.00 0.00 4.02
2889 3103 3.931907 TGTGCCTAGCATTAACTCCAT 57.068 42.857 0.00 0.00 41.91 3.41
2929 3143 8.665685 ACTAATCTATTGCGGTTTTCAGTTTAG 58.334 33.333 0.00 0.00 0.00 1.85
3057 3746 9.277783 AGTGCTATACCAATAAATGAAGATGAC 57.722 33.333 0.00 0.00 0.00 3.06
3166 3855 1.636148 AGCATTTGCATTCCACCTGT 58.364 45.000 5.20 0.00 45.16 4.00
3233 3922 9.243105 CTTACAATCCTCAGATTTTCCCTAAAA 57.757 33.333 0.00 0.00 40.89 1.52
3328 4017 1.071385 CTGACCTTGGTCAGCTCAGTT 59.929 52.381 29.56 0.00 43.39 3.16
3373 4062 3.807622 TGCTGTGTACTTGCTAACAACTC 59.192 43.478 0.00 0.00 0.00 3.01
3384 4073 0.987294 ATGCCTCCTGCTGTGTACTT 59.013 50.000 0.00 0.00 42.00 2.24
3391 4080 1.309950 CTGAATCATGCCTCCTGCTG 58.690 55.000 0.00 0.00 42.00 4.41
3392 4081 0.183014 CCTGAATCATGCCTCCTGCT 59.817 55.000 0.00 0.00 42.00 4.24
3393 4082 0.106819 ACCTGAATCATGCCTCCTGC 60.107 55.000 0.00 0.00 41.77 4.85
3490 4179 3.571590 CAATCTAGAGGGCTGGAGTACT 58.428 50.000 0.00 0.00 34.94 2.73
3783 4472 1.837439 CCACTAAGGCCACCACTCATA 59.163 52.381 5.01 0.00 0.00 2.15
3966 4655 5.829829 TGTACCATGTTTAAAACCCGAAAC 58.170 37.500 0.00 0.00 36.33 2.78
4057 4746 0.317603 GCAGCATTTCAGGCATAGCG 60.318 55.000 0.00 0.00 0.00 4.26
4156 4845 2.338015 CCAGGCAACAATCGCTGCT 61.338 57.895 0.00 0.00 38.65 4.24
4262 4951 8.519799 TTCCTGACTTTCTTATTGACTTTTGT 57.480 30.769 0.00 0.00 0.00 2.83
4438 5130 3.612860 CCGTAGTAGTAACAGCAAGCAAG 59.387 47.826 0.00 0.00 0.00 4.01
4444 5136 5.648178 TGATTTCCGTAGTAGTAACAGCA 57.352 39.130 0.00 0.00 0.00 4.41
4506 5202 8.788325 AAGTGACTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
4512 5208 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
4513 5209 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
4514 5210 7.776030 TCCCAAAATAAGTGACTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
4515 5211 6.605594 TCCCAAAATAAGTGACTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
4516 5212 7.038154 TCCCAAAATAAGTGACTCAACTTTG 57.962 36.000 0.00 0.00 40.77 2.77
4517 5213 7.255942 CCATCCCAAAATAAGTGACTCAACTTT 60.256 37.037 0.00 0.00 40.77 2.66
4518 5214 6.209391 CCATCCCAAAATAAGTGACTCAACTT 59.791 38.462 0.00 0.00 42.89 2.66
4519 5215 5.711976 CCATCCCAAAATAAGTGACTCAACT 59.288 40.000 0.00 0.00 0.00 3.16
4520 5216 5.710099 TCCATCCCAAAATAAGTGACTCAAC 59.290 40.000 0.00 0.00 0.00 3.18
4521 5217 5.886609 TCCATCCCAAAATAAGTGACTCAA 58.113 37.500 0.00 0.00 0.00 3.02
4522 5218 5.500234 CTCCATCCCAAAATAAGTGACTCA 58.500 41.667 0.00 0.00 0.00 3.41
4523 5219 4.884164 CCTCCATCCCAAAATAAGTGACTC 59.116 45.833 0.00 0.00 0.00 3.36
4524 5220 4.325344 CCCTCCATCCCAAAATAAGTGACT 60.325 45.833 0.00 0.00 0.00 3.41
4525 5221 3.954258 CCCTCCATCCCAAAATAAGTGAC 59.046 47.826 0.00 0.00 0.00 3.67
4526 5222 3.855599 TCCCTCCATCCCAAAATAAGTGA 59.144 43.478 0.00 0.00 0.00 3.41
4527 5223 4.210331 CTCCCTCCATCCCAAAATAAGTG 58.790 47.826 0.00 0.00 0.00 3.16
4528 5224 3.858638 ACTCCCTCCATCCCAAAATAAGT 59.141 43.478 0.00 0.00 0.00 2.24
4529 5225 4.526438 ACTCCCTCCATCCCAAAATAAG 57.474 45.455 0.00 0.00 0.00 1.73
4530 5226 7.257382 CCATATACTCCCTCCATCCCAAAATAA 60.257 40.741 0.00 0.00 0.00 1.40
4531 5227 6.217487 CCATATACTCCCTCCATCCCAAAATA 59.783 42.308 0.00 0.00 0.00 1.40
4532 5228 5.015603 CCATATACTCCCTCCATCCCAAAAT 59.984 44.000 0.00 0.00 0.00 1.82
4533 5229 4.353788 CCATATACTCCCTCCATCCCAAAA 59.646 45.833 0.00 0.00 0.00 2.44
4534 5230 3.916349 CCATATACTCCCTCCATCCCAAA 59.084 47.826 0.00 0.00 0.00 3.28
4535 5231 3.115962 ACCATATACTCCCTCCATCCCAA 60.116 47.826 0.00 0.00 0.00 4.12
4536 5232 2.458706 ACCATATACTCCCTCCATCCCA 59.541 50.000 0.00 0.00 0.00 4.37
4537 5233 3.207044 ACCATATACTCCCTCCATCCC 57.793 52.381 0.00 0.00 0.00 3.85
4538 5234 5.187967 CACTAACCATATACTCCCTCCATCC 59.812 48.000 0.00 0.00 0.00 3.51
4539 5235 5.780793 ACACTAACCATATACTCCCTCCATC 59.219 44.000 0.00 0.00 0.00 3.51
4540 5236 5.727630 ACACTAACCATATACTCCCTCCAT 58.272 41.667 0.00 0.00 0.00 3.41
4541 5237 5.152306 ACACTAACCATATACTCCCTCCA 57.848 43.478 0.00 0.00 0.00 3.86
4542 5238 5.839606 AGAACACTAACCATATACTCCCTCC 59.160 44.000 0.00 0.00 0.00 4.30
4543 5239 6.324254 ACAGAACACTAACCATATACTCCCTC 59.676 42.308 0.00 0.00 0.00 4.30
4544 5240 6.098409 CACAGAACACTAACCATATACTCCCT 59.902 42.308 0.00 0.00 0.00 4.20
4545 5241 6.281405 CACAGAACACTAACCATATACTCCC 58.719 44.000 0.00 0.00 0.00 4.30
4546 5242 6.127140 ACCACAGAACACTAACCATATACTCC 60.127 42.308 0.00 0.00 0.00 3.85
4547 5243 6.875076 ACCACAGAACACTAACCATATACTC 58.125 40.000 0.00 0.00 0.00 2.59
4548 5244 6.869206 ACCACAGAACACTAACCATATACT 57.131 37.500 0.00 0.00 0.00 2.12
4551 5247 5.013704 TCCAACCACAGAACACTAACCATAT 59.986 40.000 0.00 0.00 0.00 1.78
4567 5263 2.962421 TCCCAACTTTCATTCCAACCAC 59.038 45.455 0.00 0.00 0.00 4.16
4570 5266 6.287525 TGAAAATCCCAACTTTCATTCCAAC 58.712 36.000 0.00 0.00 36.79 3.77
4607 5303 9.803315 TCAATCACATAGAACACTAACAGATAC 57.197 33.333 0.00 0.00 0.00 2.24
4609 5396 9.725019 TTTCAATCACATAGAACACTAACAGAT 57.275 29.630 0.00 0.00 0.00 2.90
4610 5397 9.208022 CTTTCAATCACATAGAACACTAACAGA 57.792 33.333 0.00 0.00 0.00 3.41
4611 5398 9.208022 TCTTTCAATCACATAGAACACTAACAG 57.792 33.333 0.00 0.00 0.00 3.16
4612 5399 9.554395 TTCTTTCAATCACATAGAACACTAACA 57.446 29.630 0.00 0.00 0.00 2.41
4643 5430 9.483916 TCTGAATGTCTAAAACGTCTGATAAAA 57.516 29.630 0.00 0.00 0.00 1.52
4644 5431 8.922676 GTCTGAATGTCTAAAACGTCTGATAAA 58.077 33.333 0.00 0.00 30.51 1.40
4645 5432 8.085909 TGTCTGAATGTCTAAAACGTCTGATAA 58.914 33.333 0.00 0.00 30.51 1.75
4646 5433 7.541091 GTGTCTGAATGTCTAAAACGTCTGATA 59.459 37.037 0.00 0.00 30.51 2.15
4647 5434 6.366332 GTGTCTGAATGTCTAAAACGTCTGAT 59.634 38.462 0.00 0.00 30.51 2.90
4648 5435 5.690409 GTGTCTGAATGTCTAAAACGTCTGA 59.310 40.000 0.00 0.00 0.00 3.27
4649 5436 5.692204 AGTGTCTGAATGTCTAAAACGTCTG 59.308 40.000 0.00 0.00 0.00 3.51
4650 5437 5.692204 CAGTGTCTGAATGTCTAAAACGTCT 59.308 40.000 0.00 0.00 32.44 4.18
4651 5438 5.462398 ACAGTGTCTGAATGTCTAAAACGTC 59.538 40.000 3.70 0.00 35.18 4.34
4652 5439 5.357257 ACAGTGTCTGAATGTCTAAAACGT 58.643 37.500 3.70 0.00 35.18 3.99
4653 5440 5.907197 ACAGTGTCTGAATGTCTAAAACG 57.093 39.130 3.70 0.00 35.18 3.60
4654 5441 7.246674 TCAACAGTGTCTGAATGTCTAAAAC 57.753 36.000 0.00 0.00 35.18 2.43
4655 5442 7.857734 TTCAACAGTGTCTGAATGTCTAAAA 57.142 32.000 13.46 0.00 35.18 1.52
4656 5443 7.857734 TTTCAACAGTGTCTGAATGTCTAAA 57.142 32.000 16.42 3.58 35.18 1.85
4657 5444 7.335673 TGTTTTCAACAGTGTCTGAATGTCTAA 59.664 33.333 16.42 8.69 36.25 2.10
4658 5445 6.821160 TGTTTTCAACAGTGTCTGAATGTCTA 59.179 34.615 16.42 4.58 36.25 2.59
4659 5446 5.647658 TGTTTTCAACAGTGTCTGAATGTCT 59.352 36.000 16.42 0.00 36.25 3.41
4660 5447 5.879237 TGTTTTCAACAGTGTCTGAATGTC 58.121 37.500 16.42 12.04 36.25 3.06
4661 5448 5.895636 TGTTTTCAACAGTGTCTGAATGT 57.104 34.783 16.42 0.00 36.25 2.71
4673 5460 2.357075 TGCCGTGTACTGTTTTCAACA 58.643 42.857 0.00 0.00 39.52 3.33
4674 5461 3.359654 CTTGCCGTGTACTGTTTTCAAC 58.640 45.455 0.00 0.00 0.00 3.18
4675 5462 2.223386 GCTTGCCGTGTACTGTTTTCAA 60.223 45.455 0.00 0.00 0.00 2.69
4676 5463 1.332375 GCTTGCCGTGTACTGTTTTCA 59.668 47.619 0.00 0.00 0.00 2.69
4677 5464 1.602377 AGCTTGCCGTGTACTGTTTTC 59.398 47.619 0.00 0.00 0.00 2.29
4678 5465 1.333619 CAGCTTGCCGTGTACTGTTTT 59.666 47.619 0.00 0.00 0.00 2.43
4679 5466 0.944386 CAGCTTGCCGTGTACTGTTT 59.056 50.000 0.00 0.00 0.00 2.83
4680 5467 0.179056 ACAGCTTGCCGTGTACTGTT 60.179 50.000 0.00 0.00 38.38 3.16
4681 5468 0.600255 GACAGCTTGCCGTGTACTGT 60.600 55.000 0.00 0.00 43.93 3.55
4682 5469 0.319900 AGACAGCTTGCCGTGTACTG 60.320 55.000 0.00 0.00 0.00 2.74
4683 5470 0.319900 CAGACAGCTTGCCGTGTACT 60.320 55.000 0.00 0.00 0.00 2.73
4684 5471 0.319555 TCAGACAGCTTGCCGTGTAC 60.320 55.000 0.00 0.00 0.00 2.90
4685 5472 0.391228 TTCAGACAGCTTGCCGTGTA 59.609 50.000 0.00 0.00 0.00 2.90
4686 5473 0.463654 TTTCAGACAGCTTGCCGTGT 60.464 50.000 0.00 0.00 0.00 4.49
4687 5474 0.040958 GTTTCAGACAGCTTGCCGTG 60.041 55.000 0.00 0.00 0.00 4.94
4688 5475 1.498865 CGTTTCAGACAGCTTGCCGT 61.499 55.000 0.00 0.00 0.00 5.68
4689 5476 1.205064 CGTTTCAGACAGCTTGCCG 59.795 57.895 0.00 0.00 0.00 5.69
4690 5477 0.235926 GACGTTTCAGACAGCTTGCC 59.764 55.000 0.00 0.00 0.00 4.52
4691 5478 1.221414 AGACGTTTCAGACAGCTTGC 58.779 50.000 0.00 0.00 0.00 4.01
4692 5479 6.706055 TTATAAGACGTTTCAGACAGCTTG 57.294 37.500 0.00 0.00 0.00 4.01
4693 5480 7.724305 TTTTATAAGACGTTTCAGACAGCTT 57.276 32.000 0.00 0.00 0.00 3.74
4694 5481 7.225931 TGTTTTTATAAGACGTTTCAGACAGCT 59.774 33.333 0.00 0.00 0.00 4.24
4695 5482 7.349711 TGTTTTTATAAGACGTTTCAGACAGC 58.650 34.615 0.00 0.00 0.00 4.40
4696 5483 9.710979 TTTGTTTTTATAAGACGTTTCAGACAG 57.289 29.630 0.00 0.00 0.00 3.51
4697 5484 9.493206 GTTTGTTTTTATAAGACGTTTCAGACA 57.507 29.630 0.00 0.00 0.00 3.41
4698 5485 8.667204 CGTTTGTTTTTATAAGACGTTTCAGAC 58.333 33.333 0.00 0.00 0.00 3.51
4699 5486 7.851963 CCGTTTGTTTTTATAAGACGTTTCAGA 59.148 33.333 0.00 0.00 0.00 3.27
4700 5487 7.851963 TCCGTTTGTTTTTATAAGACGTTTCAG 59.148 33.333 0.00 0.00 0.00 3.02
4701 5488 7.692088 TCCGTTTGTTTTTATAAGACGTTTCA 58.308 30.769 0.00 0.00 0.00 2.69
4702 5489 7.321984 CCTCCGTTTGTTTTTATAAGACGTTTC 59.678 37.037 0.00 0.00 0.00 2.78
4703 5490 7.134163 CCTCCGTTTGTTTTTATAAGACGTTT 58.866 34.615 0.00 0.00 0.00 3.60
4704 5491 6.293571 CCCTCCGTTTGTTTTTATAAGACGTT 60.294 38.462 0.00 0.00 0.00 3.99
4705 5492 5.179929 CCCTCCGTTTGTTTTTATAAGACGT 59.820 40.000 0.00 0.00 0.00 4.34
4706 5493 5.409214 TCCCTCCGTTTGTTTTTATAAGACG 59.591 40.000 0.00 0.00 0.00 4.18
4707 5494 6.429078 ACTCCCTCCGTTTGTTTTTATAAGAC 59.571 38.462 0.00 0.00 0.00 3.01
4708 5495 6.536447 ACTCCCTCCGTTTGTTTTTATAAGA 58.464 36.000 0.00 0.00 0.00 2.10
4709 5496 6.812879 ACTCCCTCCGTTTGTTTTTATAAG 57.187 37.500 0.00 0.00 0.00 1.73
4710 5497 8.866970 AATACTCCCTCCGTTTGTTTTTATAA 57.133 30.769 0.00 0.00 0.00 0.98
4712 5499 9.470399 AATAATACTCCCTCCGTTTGTTTTTAT 57.530 29.630 0.00 0.00 0.00 1.40
4713 5500 8.732531 CAATAATACTCCCTCCGTTTGTTTTTA 58.267 33.333 0.00 0.00 0.00 1.52
4714 5501 7.231925 ACAATAATACTCCCTCCGTTTGTTTTT 59.768 33.333 0.00 0.00 0.00 1.94
4715 5502 6.717997 ACAATAATACTCCCTCCGTTTGTTTT 59.282 34.615 0.00 0.00 0.00 2.43
4716 5503 6.243148 ACAATAATACTCCCTCCGTTTGTTT 58.757 36.000 0.00 0.00 0.00 2.83
4717 5504 5.812286 ACAATAATACTCCCTCCGTTTGTT 58.188 37.500 0.00 0.00 0.00 2.83
4718 5505 5.431179 ACAATAATACTCCCTCCGTTTGT 57.569 39.130 0.00 0.00 0.00 2.83
4719 5506 5.006358 CGAACAATAATACTCCCTCCGTTTG 59.994 44.000 0.00 0.00 0.00 2.93
4720 5507 5.114081 CGAACAATAATACTCCCTCCGTTT 58.886 41.667 0.00 0.00 0.00 3.60
4721 5508 4.161001 ACGAACAATAATACTCCCTCCGTT 59.839 41.667 0.00 0.00 0.00 4.44
4722 5509 3.703052 ACGAACAATAATACTCCCTCCGT 59.297 43.478 0.00 0.00 0.00 4.69
4723 5510 4.317671 ACGAACAATAATACTCCCTCCG 57.682 45.455 0.00 0.00 0.00 4.63
4724 5511 5.667466 TGAACGAACAATAATACTCCCTCC 58.333 41.667 0.00 0.00 0.00 4.30
4725 5512 7.711339 AGATTGAACGAACAATAATACTCCCTC 59.289 37.037 10.52 0.00 40.03 4.30
4726 5513 7.565680 AGATTGAACGAACAATAATACTCCCT 58.434 34.615 10.52 1.61 40.03 4.20
4727 5514 7.787725 AGATTGAACGAACAATAATACTCCC 57.212 36.000 10.52 0.00 40.03 4.30
4758 5628 4.638304 TCTTTTTGAAACGGAGGGAGTAG 58.362 43.478 0.00 0.00 0.00 2.57
4760 5630 3.135895 TCTCTTTTTGAAACGGAGGGAGT 59.864 43.478 6.52 0.00 0.00 3.85
4761 5631 3.740115 TCTCTTTTTGAAACGGAGGGAG 58.260 45.455 6.52 0.00 0.00 4.30
4763 5633 2.814336 CCTCTCTTTTTGAAACGGAGGG 59.186 50.000 0.00 3.79 36.28 4.30
4764 5634 2.814336 CCCTCTCTTTTTGAAACGGAGG 59.186 50.000 0.00 0.00 38.71 4.30
4765 5635 2.814336 CCCCTCTCTTTTTGAAACGGAG 59.186 50.000 0.00 1.45 0.00 4.63
4766 5636 2.858745 CCCCTCTCTTTTTGAAACGGA 58.141 47.619 0.00 0.00 0.00 4.69
4767 5637 1.269723 GCCCCTCTCTTTTTGAAACGG 59.730 52.381 0.00 0.00 0.00 4.44
4768 5638 1.269723 GGCCCCTCTCTTTTTGAAACG 59.730 52.381 0.00 0.00 0.00 3.60
4769 5639 1.269723 CGGCCCCTCTCTTTTTGAAAC 59.730 52.381 0.00 0.00 0.00 2.78
4770 5640 1.144093 TCGGCCCCTCTCTTTTTGAAA 59.856 47.619 0.00 0.00 0.00 2.69
4771 5641 0.768622 TCGGCCCCTCTCTTTTTGAA 59.231 50.000 0.00 0.00 0.00 2.69
4772 5642 0.991920 ATCGGCCCCTCTCTTTTTGA 59.008 50.000 0.00 0.00 0.00 2.69
4774 5644 0.991920 TGATCGGCCCCTCTCTTTTT 59.008 50.000 0.00 0.00 0.00 1.94
4775 5645 1.133976 CATGATCGGCCCCTCTCTTTT 60.134 52.381 0.00 0.00 0.00 2.27
4776 5646 0.471617 CATGATCGGCCCCTCTCTTT 59.528 55.000 0.00 0.00 0.00 2.52
4802 5698 5.297547 TGACATGAGAACACTTCTTGGTAC 58.702 41.667 0.00 0.00 40.87 3.34
4825 5721 5.598416 TGTGAGATCATCCTGTTTACGAT 57.402 39.130 0.00 0.00 0.00 3.73
4827 5723 4.929211 TGTTGTGAGATCATCCTGTTTACG 59.071 41.667 0.00 0.00 0.00 3.18
4838 5734 2.369860 ACTTCAGCCTGTTGTGAGATCA 59.630 45.455 0.00 0.00 0.00 2.92
4842 5738 2.693069 CCTACTTCAGCCTGTTGTGAG 58.307 52.381 0.00 0.00 0.00 3.51
4965 5867 3.170791 AGCACGGTGACATAATCAGAG 57.829 47.619 13.29 0.00 38.28 3.35
5044 5955 0.674534 GTCTGTTCTGGACGGTGAGT 59.325 55.000 0.00 0.00 36.00 3.41
5051 5962 2.724977 TCATGTCGTCTGTTCTGGAC 57.275 50.000 0.00 0.00 0.00 4.02
5052 5963 3.511540 AGATTCATGTCGTCTGTTCTGGA 59.488 43.478 0.00 0.00 0.00 3.86
5053 5964 3.854666 AGATTCATGTCGTCTGTTCTGG 58.145 45.455 0.00 0.00 0.00 3.86
5054 5965 4.497251 CGTAGATTCATGTCGTCTGTTCTG 59.503 45.833 0.00 0.00 0.00 3.02
5055 5966 4.663166 CGTAGATTCATGTCGTCTGTTCT 58.337 43.478 0.00 0.00 0.00 3.01
5056 5967 3.240861 GCGTAGATTCATGTCGTCTGTTC 59.759 47.826 0.00 0.00 0.00 3.18
5057 5968 3.119459 AGCGTAGATTCATGTCGTCTGTT 60.119 43.478 0.00 0.00 0.00 3.16
5058 5969 2.423892 AGCGTAGATTCATGTCGTCTGT 59.576 45.455 0.00 0.00 0.00 3.41
5059 5970 3.039405 GAGCGTAGATTCATGTCGTCTG 58.961 50.000 0.00 0.00 0.00 3.51
5060 5971 2.286477 CGAGCGTAGATTCATGTCGTCT 60.286 50.000 0.00 0.00 0.00 4.18
5099 6010 1.262151 TGTACTCTTCGTTTTTGCGCC 59.738 47.619 4.18 0.00 0.00 6.53
5100 6011 2.656192 TGTACTCTTCGTTTTTGCGC 57.344 45.000 0.00 0.00 0.00 6.09
5101 6012 4.383774 TGATGTACTCTTCGTTTTTGCG 57.616 40.909 0.00 0.00 0.00 4.85
5102 6013 5.927030 TGATGATGTACTCTTCGTTTTTGC 58.073 37.500 0.00 0.00 32.09 3.68
5103 6014 8.955061 ATTTGATGATGTACTCTTCGTTTTTG 57.045 30.769 0.00 0.00 32.09 2.44
5104 6015 9.612620 GAATTTGATGATGTACTCTTCGTTTTT 57.387 29.630 0.00 0.00 32.09 1.94
5105 6016 8.783093 TGAATTTGATGATGTACTCTTCGTTTT 58.217 29.630 0.00 0.00 32.09 2.43
5106 6017 8.322906 TGAATTTGATGATGTACTCTTCGTTT 57.677 30.769 0.00 0.00 32.09 3.60
5107 6018 7.905604 TGAATTTGATGATGTACTCTTCGTT 57.094 32.000 0.00 0.00 32.09 3.85
5108 6019 7.984050 AGATGAATTTGATGATGTACTCTTCGT 59.016 33.333 0.00 0.00 32.09 3.85
5109 6020 8.362860 AGATGAATTTGATGATGTACTCTTCG 57.637 34.615 0.00 0.00 32.09 3.79
5111 6022 9.270640 GCTAGATGAATTTGATGATGTACTCTT 57.729 33.333 0.00 0.00 0.00 2.85
5112 6023 8.649591 AGCTAGATGAATTTGATGATGTACTCT 58.350 33.333 0.00 0.00 0.00 3.24
5113 6024 8.830201 AGCTAGATGAATTTGATGATGTACTC 57.170 34.615 0.00 0.00 0.00 2.59
5114 6025 8.427276 TGAGCTAGATGAATTTGATGATGTACT 58.573 33.333 0.00 0.00 0.00 2.73
5115 6026 8.494347 GTGAGCTAGATGAATTTGATGATGTAC 58.506 37.037 0.00 0.00 0.00 2.90
5116 6027 8.206189 TGTGAGCTAGATGAATTTGATGATGTA 58.794 33.333 0.00 0.00 0.00 2.29
5117 6028 7.012138 GTGTGAGCTAGATGAATTTGATGATGT 59.988 37.037 0.00 0.00 0.00 3.06
5118 6029 7.012044 TGTGTGAGCTAGATGAATTTGATGATG 59.988 37.037 0.00 0.00 0.00 3.07
5119 6030 7.052248 TGTGTGAGCTAGATGAATTTGATGAT 58.948 34.615 0.00 0.00 0.00 2.45
5120 6031 6.408869 TGTGTGAGCTAGATGAATTTGATGA 58.591 36.000 0.00 0.00 0.00 2.92
5121 6032 6.673154 TGTGTGAGCTAGATGAATTTGATG 57.327 37.500 0.00 0.00 0.00 3.07
5122 6033 7.681304 GCATTGTGTGAGCTAGATGAATTTGAT 60.681 37.037 0.00 0.00 0.00 2.57
5123 6034 6.403964 GCATTGTGTGAGCTAGATGAATTTGA 60.404 38.462 0.00 0.00 0.00 2.69
5124 6035 5.742453 GCATTGTGTGAGCTAGATGAATTTG 59.258 40.000 0.00 0.00 0.00 2.32
5125 6036 5.416639 TGCATTGTGTGAGCTAGATGAATTT 59.583 36.000 0.00 0.00 0.00 1.82
5126 6037 4.945543 TGCATTGTGTGAGCTAGATGAATT 59.054 37.500 0.00 0.00 0.00 2.17
5127 6038 4.520179 TGCATTGTGTGAGCTAGATGAAT 58.480 39.130 0.00 0.00 0.00 2.57
5128 6039 3.937079 CTGCATTGTGTGAGCTAGATGAA 59.063 43.478 0.00 0.00 0.00 2.57
5129 6040 3.528532 CTGCATTGTGTGAGCTAGATGA 58.471 45.455 0.00 0.00 0.00 2.92
5130 6041 2.612672 CCTGCATTGTGTGAGCTAGATG 59.387 50.000 0.00 0.00 0.00 2.90
5131 6042 2.238144 ACCTGCATTGTGTGAGCTAGAT 59.762 45.455 0.00 0.00 0.00 1.98
5132 6043 1.625315 ACCTGCATTGTGTGAGCTAGA 59.375 47.619 0.00 0.00 0.00 2.43
5133 6044 1.736126 CACCTGCATTGTGTGAGCTAG 59.264 52.381 8.05 0.00 31.66 3.42
5134 6045 1.347378 TCACCTGCATTGTGTGAGCTA 59.653 47.619 14.14 0.00 34.28 3.32
5135 6046 0.109153 TCACCTGCATTGTGTGAGCT 59.891 50.000 14.14 0.00 34.28 4.09
5136 6047 0.953727 TTCACCTGCATTGTGTGAGC 59.046 50.000 14.14 0.00 39.89 4.26
5137 6048 3.928727 AATTCACCTGCATTGTGTGAG 57.071 42.857 14.14 0.00 39.89 3.51
5138 6049 4.370049 CAAAATTCACCTGCATTGTGTGA 58.630 39.130 14.14 9.56 37.24 3.58
5139 6050 3.495377 CCAAAATTCACCTGCATTGTGTG 59.505 43.478 14.14 7.66 35.25 3.82
5140 6051 3.387374 TCCAAAATTCACCTGCATTGTGT 59.613 39.130 14.14 0.00 35.25 3.72
5141 6052 3.991773 CTCCAAAATTCACCTGCATTGTG 59.008 43.478 9.61 9.61 35.01 3.33
5142 6053 3.642848 ACTCCAAAATTCACCTGCATTGT 59.357 39.130 0.00 0.00 0.00 2.71
5143 6054 3.991773 CACTCCAAAATTCACCTGCATTG 59.008 43.478 0.00 0.00 0.00 2.82
5144 6055 3.896888 TCACTCCAAAATTCACCTGCATT 59.103 39.130 0.00 0.00 0.00 3.56
5145 6056 3.499338 TCACTCCAAAATTCACCTGCAT 58.501 40.909 0.00 0.00 0.00 3.96
5146 6057 2.942804 TCACTCCAAAATTCACCTGCA 58.057 42.857 0.00 0.00 0.00 4.41
5147 6058 4.525912 ATTCACTCCAAAATTCACCTGC 57.474 40.909 0.00 0.00 0.00 4.85
5148 6059 5.693104 CACAATTCACTCCAAAATTCACCTG 59.307 40.000 0.00 0.00 0.00 4.00
5149 6060 5.598005 TCACAATTCACTCCAAAATTCACCT 59.402 36.000 0.00 0.00 0.00 4.00
5150 6061 5.841810 TCACAATTCACTCCAAAATTCACC 58.158 37.500 0.00 0.00 0.00 4.02
5151 6062 7.769272 TTTCACAATTCACTCCAAAATTCAC 57.231 32.000 0.00 0.00 0.00 3.18
5152 6063 8.663911 GTTTTTCACAATTCACTCCAAAATTCA 58.336 29.630 0.00 0.00 0.00 2.57
5153 6064 8.122330 GGTTTTTCACAATTCACTCCAAAATTC 58.878 33.333 0.00 0.00 0.00 2.17
5154 6065 7.609532 TGGTTTTTCACAATTCACTCCAAAATT 59.390 29.630 0.00 0.00 0.00 1.82
5155 6066 7.065683 GTGGTTTTTCACAATTCACTCCAAAAT 59.934 33.333 0.00 0.00 37.57 1.82
5156 6067 6.370166 GTGGTTTTTCACAATTCACTCCAAAA 59.630 34.615 0.00 0.00 37.57 2.44
5157 6068 5.872070 GTGGTTTTTCACAATTCACTCCAAA 59.128 36.000 0.00 0.00 37.57 3.28
5158 6069 5.415221 GTGGTTTTTCACAATTCACTCCAA 58.585 37.500 0.00 0.00 37.57 3.53
5159 6070 4.142049 GGTGGTTTTTCACAATTCACTCCA 60.142 41.667 0.00 0.00 39.27 3.86
5160 6071 4.142049 TGGTGGTTTTTCACAATTCACTCC 60.142 41.667 0.00 0.00 39.27 3.85
5161 6072 4.803613 GTGGTGGTTTTTCACAATTCACTC 59.196 41.667 0.00 0.00 39.27 3.51
5162 6073 4.221703 TGTGGTGGTTTTTCACAATTCACT 59.778 37.500 0.00 0.00 38.30 3.41
5163 6074 4.499183 TGTGGTGGTTTTTCACAATTCAC 58.501 39.130 0.00 0.00 38.30 3.18
5164 6075 4.808414 TGTGGTGGTTTTTCACAATTCA 57.192 36.364 0.00 0.00 38.30 2.57
5165 6076 5.814705 TCAATGTGGTGGTTTTTCACAATTC 59.185 36.000 0.00 0.00 43.38 2.17
5166 6077 5.738909 TCAATGTGGTGGTTTTTCACAATT 58.261 33.333 0.00 0.00 43.38 2.32
5167 6078 5.350504 TCAATGTGGTGGTTTTTCACAAT 57.649 34.783 0.00 0.00 43.38 2.71
5168 6079 4.808414 TCAATGTGGTGGTTTTTCACAA 57.192 36.364 0.00 0.00 43.38 3.33
5169 6080 4.753233 CTTCAATGTGGTGGTTTTTCACA 58.247 39.130 0.00 0.00 44.12 3.58
5170 6081 3.555547 GCTTCAATGTGGTGGTTTTTCAC 59.444 43.478 0.00 0.00 36.95 3.18
5171 6082 3.736433 CGCTTCAATGTGGTGGTTTTTCA 60.736 43.478 0.00 0.00 0.00 2.69
5172 6083 2.794350 CGCTTCAATGTGGTGGTTTTTC 59.206 45.455 0.00 0.00 0.00 2.29
5173 6084 2.167487 ACGCTTCAATGTGGTGGTTTTT 59.833 40.909 0.00 0.00 0.00 1.94
5174 6085 1.754226 ACGCTTCAATGTGGTGGTTTT 59.246 42.857 0.00 0.00 0.00 2.43
5175 6086 1.398692 ACGCTTCAATGTGGTGGTTT 58.601 45.000 0.00 0.00 0.00 3.27
5176 6087 2.151202 CTACGCTTCAATGTGGTGGTT 58.849 47.619 0.00 0.00 0.00 3.67
5177 6088 1.610624 CCTACGCTTCAATGTGGTGGT 60.611 52.381 0.00 0.00 0.00 4.16
5178 6089 1.086696 CCTACGCTTCAATGTGGTGG 58.913 55.000 0.00 0.00 0.00 4.61
5179 6090 1.808411 ACCTACGCTTCAATGTGGTG 58.192 50.000 0.00 0.00 0.00 4.17
5180 6091 2.552315 CAAACCTACGCTTCAATGTGGT 59.448 45.455 0.00 0.00 0.00 4.16
5181 6092 2.668279 GCAAACCTACGCTTCAATGTGG 60.668 50.000 0.00 0.00 0.00 4.17
5182 6093 2.031245 TGCAAACCTACGCTTCAATGTG 60.031 45.455 0.00 0.00 0.00 3.21
5183 6094 2.226330 TGCAAACCTACGCTTCAATGT 58.774 42.857 0.00 0.00 0.00 2.71
5184 6095 2.414559 CCTGCAAACCTACGCTTCAATG 60.415 50.000 0.00 0.00 0.00 2.82
5185 6096 1.812571 CCTGCAAACCTACGCTTCAAT 59.187 47.619 0.00 0.00 0.00 2.57
5186 6097 1.234821 CCTGCAAACCTACGCTTCAA 58.765 50.000 0.00 0.00 0.00 2.69
5187 6098 0.605319 CCCTGCAAACCTACGCTTCA 60.605 55.000 0.00 0.00 0.00 3.02
5188 6099 0.321298 TCCCTGCAAACCTACGCTTC 60.321 55.000 0.00 0.00 0.00 3.86
5189 6100 0.109723 TTCCCTGCAAACCTACGCTT 59.890 50.000 0.00 0.00 0.00 4.68
5190 6101 0.321653 CTTCCCTGCAAACCTACGCT 60.322 55.000 0.00 0.00 0.00 5.07
5191 6102 0.321298 TCTTCCCTGCAAACCTACGC 60.321 55.000 0.00 0.00 0.00 4.42
5192 6103 1.002087 AGTCTTCCCTGCAAACCTACG 59.998 52.381 0.00 0.00 0.00 3.51
5193 6104 2.701107 GAGTCTTCCCTGCAAACCTAC 58.299 52.381 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.