Multiple sequence alignment - TraesCS4D01G305100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G305100 chr4D 100.000 3816 0 0 1 3816 473808683 473812498 0.000000e+00 7047.0
1 TraesCS4D01G305100 chr4D 92.797 597 21 1 3242 3816 6899854 6900450 0.000000e+00 845.0
2 TraesCS4D01G305100 chr4D 91.729 133 11 0 3084 3216 279494186 279494054 6.510000e-43 185.0
3 TraesCS4D01G305100 chr4D 95.349 43 1 1 1555 1597 368007397 368007356 2.460000e-07 67.6
4 TraesCS4D01G305100 chr4B 92.344 1267 66 12 1592 2847 596373412 596374658 0.000000e+00 1773.0
5 TraesCS4D01G305100 chr4B 92.262 672 21 13 675 1337 596372477 596373126 0.000000e+00 924.0
6 TraesCS4D01G305100 chr4B 91.007 278 14 4 393 660 596372107 596372383 7.790000e-97 364.0
7 TraesCS4D01G305100 chr4B 96.682 211 7 0 3606 3816 167400385 167400175 6.070000e-93 351.0
8 TraesCS4D01G305100 chr4B 89.219 269 16 6 122 389 596371666 596371922 1.320000e-84 324.0
9 TraesCS4D01G305100 chr4B 93.583 187 8 2 2852 3036 596374702 596374886 3.760000e-70 276.0
10 TraesCS4D01G305100 chr4B 87.000 100 5 2 1529 1620 596373311 596373410 5.210000e-19 106.0
11 TraesCS4D01G305100 chr3D 97.743 576 12 1 3241 3816 209676172 209675598 0.000000e+00 990.0
12 TraesCS4D01G305100 chr4A 84.579 1044 94 39 2069 3054 680371123 680372157 0.000000e+00 974.0
13 TraesCS4D01G305100 chr4A 92.269 595 24 5 3241 3816 626964255 626963664 0.000000e+00 824.0
14 TraesCS4D01G305100 chr4A 85.602 764 24 22 602 1307 680369752 680370487 0.000000e+00 723.0
15 TraesCS4D01G305100 chr4A 92.466 292 21 1 1 291 680369228 680369519 2.120000e-112 416.0
16 TraesCS4D01G305100 chr4A 81.533 287 25 13 1811 2084 680370823 680371094 1.070000e-50 211.0
17 TraesCS4D01G305100 chr7D 93.802 597 15 1 3242 3816 529482731 529482135 0.000000e+00 878.0
18 TraesCS4D01G305100 chr7D 90.714 140 10 3 3076 3213 499612597 499612459 2.340000e-42 183.0
19 TraesCS4D01G305100 chr2D 94.118 357 17 4 3242 3598 620991616 620991264 1.210000e-149 540.0
20 TraesCS4D01G305100 chr2D 96.154 130 5 0 3084 3213 645989490 645989361 2.990000e-51 213.0
21 TraesCS4D01G305100 chr2D 91.743 109 9 0 1013 1121 216327291 216327399 6.600000e-33 152.0
22 TraesCS4D01G305100 chr7A 93.557 357 19 4 3242 3598 403189409 403189057 2.610000e-146 529.0
23 TraesCS4D01G305100 chr7A 93.023 129 8 1 3084 3212 28153725 28153598 1.810000e-43 187.0
24 TraesCS4D01G305100 chr7A 92.308 130 10 0 3084 3213 83737250 83737379 6.510000e-43 185.0
25 TraesCS4D01G305100 chr7B 93.660 347 19 3 3242 3588 228390235 228389892 2.030000e-142 516.0
26 TraesCS4D01G305100 chr7B 91.503 153 8 2 3664 3816 4007761 4007614 5.000000e-49 206.0
27 TraesCS4D01G305100 chr7B 85.443 158 7 5 3659 3816 727671852 727671993 2.370000e-32 150.0
28 TraesCS4D01G305100 chr3A 91.870 369 28 2 3243 3610 699228370 699228003 7.310000e-142 514.0
29 TraesCS4D01G305100 chr3A 97.802 91 0 2 2923 3012 490163976 490163887 5.100000e-34 156.0
30 TraesCS4D01G305100 chr3A 95.745 94 3 1 2913 3006 557265013 557264921 2.370000e-32 150.0
31 TraesCS4D01G305100 chr2A 92.737 358 20 6 3242 3598 691509349 691508997 2.630000e-141 512.0
32 TraesCS4D01G305100 chr2A 91.743 109 9 0 1013 1121 304982580 304982472 6.600000e-33 152.0
33 TraesCS4D01G305100 chr6A 92.201 359 24 4 3240 3598 411897921 411898275 4.400000e-139 505.0
34 TraesCS4D01G305100 chr6A 90.909 352 12 9 3485 3816 411898202 411898553 4.490000e-124 455.0
35 TraesCS4D01G305100 chr3B 93.130 131 9 0 3084 3214 62969474 62969604 3.890000e-45 193.0
36 TraesCS4D01G305100 chr3B 91.729 133 9 2 3084 3215 823802448 823802579 2.340000e-42 183.0
37 TraesCS4D01G305100 chr3B 93.878 98 4 1 2917 3014 40400625 40400530 3.070000e-31 147.0
38 TraesCS4D01G305100 chr1D 91.729 133 11 0 3084 3216 436432579 436432711 6.510000e-43 185.0
39 TraesCS4D01G305100 chr1D 95.918 98 2 2 2919 3014 416592369 416592466 1.420000e-34 158.0
40 TraesCS4D01G305100 chr1D 93.204 103 3 3 2913 3013 461420073 461419973 8.540000e-32 148.0
41 TraesCS4D01G305100 chr5D 89.362 141 15 0 3084 3224 498722035 498721895 1.090000e-40 178.0
42 TraesCS4D01G305100 chr1A 95.000 100 2 3 2913 3009 552905369 552905270 1.840000e-33 154.0
43 TraesCS4D01G305100 chrUn 93.939 99 2 2 2917 3013 1071594 1071690 3.070000e-31 147.0
44 TraesCS4D01G305100 chr2B 90.826 109 10 0 1013 1121 332331825 332331933 3.070000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G305100 chr4D 473808683 473812498 3815 False 7047.000000 7047 100.0000 1 3816 1 chr4D.!!$F2 3815
1 TraesCS4D01G305100 chr4D 6899854 6900450 596 False 845.000000 845 92.7970 3242 3816 1 chr4D.!!$F1 574
2 TraesCS4D01G305100 chr4B 596371666 596374886 3220 False 627.833333 1773 90.9025 122 3036 6 chr4B.!!$F1 2914
3 TraesCS4D01G305100 chr3D 209675598 209676172 574 True 990.000000 990 97.7430 3241 3816 1 chr3D.!!$R1 575
4 TraesCS4D01G305100 chr4A 626963664 626964255 591 True 824.000000 824 92.2690 3241 3816 1 chr4A.!!$R1 575
5 TraesCS4D01G305100 chr4A 680369228 680372157 2929 False 581.000000 974 86.0450 1 3054 4 chr4A.!!$F1 3053
6 TraesCS4D01G305100 chr7D 529482135 529482731 596 True 878.000000 878 93.8020 3242 3816 1 chr7D.!!$R2 574
7 TraesCS4D01G305100 chr6A 411897921 411898553 632 False 480.000000 505 91.5550 3240 3816 2 chr6A.!!$F1 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
532 718 1.231958 TGCGCAGTTCCCGTTTAAGG 61.232 55.0 5.66 0.0 0.00 2.69 F
1476 1854 0.035439 TCGACATTGGGAAAGCCTCC 60.035 55.0 0.00 0.0 44.54 4.30 F
2358 2951 1.204146 TATCCCTGAACCTCTGTGGC 58.796 55.0 0.00 0.0 40.22 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1739 2260 0.179936 GGCATCTCAAGTCCTCAGGG 59.820 60.000 0.0 0.0 0.00 4.45 R
2572 3215 0.251474 AGAATGCTTCTGCTTGCCCA 60.251 50.000 0.0 0.0 38.91 5.36 R
3196 3883 1.288335 ACATCTACTCCCTCCGTTCCT 59.712 52.381 0.0 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.564940 GATCAAAGGATCTTCACATGGC 57.435 45.455 0.00 0.00 45.32 4.40
104 106 4.756502 AGATGTCGAGGTTTAAACTAGGC 58.243 43.478 17.50 11.04 0.00 3.93
105 107 3.323751 TGTCGAGGTTTAAACTAGGCC 57.676 47.619 17.50 0.00 0.00 5.19
106 108 2.027837 TGTCGAGGTTTAAACTAGGCCC 60.028 50.000 17.50 0.33 0.00 5.80
114 116 4.071423 GTTTAAACTAGGCCCGGTTTGTA 58.929 43.478 24.88 14.60 37.01 2.41
119 121 3.109928 ACTAGGCCCGGTTTGTATTAGT 58.890 45.455 0.00 0.00 0.00 2.24
269 272 2.639065 TGAAAGGGTATTTGCCGCTAG 58.361 47.619 0.00 0.00 0.00 3.42
275 278 2.812011 GGGTATTTGCCGCTAGGTTATG 59.188 50.000 0.00 0.00 40.50 1.90
337 340 4.504858 AGCCACCGTAGACAAATTTAGAG 58.495 43.478 0.00 0.00 0.00 2.43
343 346 9.245962 CCACCGTAGACAAATTTAGAGTAATAG 57.754 37.037 0.00 0.00 0.00 1.73
344 347 9.798994 CACCGTAGACAAATTTAGAGTAATAGT 57.201 33.333 0.00 0.00 0.00 2.12
360 363 4.467198 AATAGTACAAACCTAGCTGCGT 57.533 40.909 0.00 0.00 0.00 5.24
361 364 5.587388 AATAGTACAAACCTAGCTGCGTA 57.413 39.130 0.00 0.00 0.00 4.42
363 366 1.916000 GTACAAACCTAGCTGCGTACG 59.084 52.381 11.84 11.84 0.00 3.67
389 392 1.304879 AGCCTCGGAGCAGAGAACT 60.305 57.895 0.00 1.03 40.57 3.01
405 589 4.335874 AGAGAACTATTACATCGTCGCACT 59.664 41.667 0.00 0.00 0.00 4.40
407 591 3.079960 ACTATTACATCGTCGCACTGG 57.920 47.619 0.00 0.00 0.00 4.00
429 613 3.399330 ACGTGTGATTTTCCATCGACTT 58.601 40.909 0.00 0.00 0.00 3.01
452 636 3.318313 CCTGACCCTCATGTACCCTAAT 58.682 50.000 0.00 0.00 0.00 1.73
453 637 3.071602 CCTGACCCTCATGTACCCTAATG 59.928 52.174 0.00 0.00 0.00 1.90
460 644 2.104792 TCATGTACCCTAATGCTGGCTC 59.895 50.000 0.00 0.00 0.00 4.70
501 685 1.953686 TGGACAAAAGCAGGCTGTTAC 59.046 47.619 17.16 0.00 0.00 2.50
532 718 1.231958 TGCGCAGTTCCCGTTTAAGG 61.232 55.000 5.66 0.00 0.00 2.69
676 917 9.337396 CACCAATTACTAGCTTGGATTTATGTA 57.663 33.333 20.38 0.00 43.83 2.29
702 1009 2.554462 GTGGCCAAGGAAGAGAAAGTTC 59.446 50.000 7.24 0.00 0.00 3.01
730 1038 7.652727 AGAAAGAATACAAACTTTGAAGGAGC 58.347 34.615 8.55 0.00 36.63 4.70
791 1114 2.044551 CCTTCCCCAGCTGGCTTC 60.045 66.667 28.39 0.00 0.00 3.86
836 1159 1.537202 CCCTTCTCCGTTCAAAGCAAG 59.463 52.381 0.00 0.00 0.00 4.01
890 1220 4.973055 TCACGCGTCCAAACCCGG 62.973 66.667 9.86 0.00 30.96 5.73
897 1227 3.235481 TCCAAACCCGGTCGAGCA 61.235 61.111 15.89 0.00 0.00 4.26
898 1228 3.047877 CCAAACCCGGTCGAGCAC 61.048 66.667 15.89 0.00 0.00 4.40
899 1229 3.411351 CAAACCCGGTCGAGCACG 61.411 66.667 15.89 6.27 41.26 5.34
907 1237 4.357947 GTCGAGCACGCACCTCCA 62.358 66.667 0.00 0.00 39.58 3.86
908 1238 4.357947 TCGAGCACGCACCTCCAC 62.358 66.667 0.00 0.00 39.58 4.02
910 1240 4.357947 GAGCACGCACCTCCACGA 62.358 66.667 0.00 0.00 0.00 4.35
911 1241 4.664677 AGCACGCACCTCCACGAC 62.665 66.667 0.00 0.00 0.00 4.34
912 1242 4.664677 GCACGCACCTCCACGACT 62.665 66.667 0.00 0.00 0.00 4.18
913 1243 2.430921 CACGCACCTCCACGACTC 60.431 66.667 0.00 0.00 0.00 3.36
914 1244 4.039357 ACGCACCTCCACGACTCG 62.039 66.667 0.00 0.00 0.00 4.18
929 1277 2.464865 GACTCGATCCAAATCACTCCG 58.535 52.381 0.00 0.00 31.76 4.63
936 1284 1.815421 CAAATCACTCCGGGGAGCG 60.815 63.158 9.33 5.50 45.54 5.03
967 1320 1.298713 CAGAAGAGATCGCCCGACG 60.299 63.158 0.00 0.00 45.62 5.12
1129 1486 2.040779 CCTACCAGGTCCCCCTCC 60.041 72.222 0.00 0.00 39.89 4.30
1132 1489 2.607139 CTACCAGGTCCCCCTCCCTC 62.607 70.000 0.00 0.00 39.89 4.30
1137 1494 4.500826 GTCCCCCTCCCTCCCTCC 62.501 77.778 0.00 0.00 0.00 4.30
1138 1495 4.761304 TCCCCCTCCCTCCCTCCT 62.761 72.222 0.00 0.00 0.00 3.69
1139 1496 3.711782 CCCCCTCCCTCCCTCCTT 61.712 72.222 0.00 0.00 0.00 3.36
1140 1497 2.461637 CCCCTCCCTCCCTCCTTT 59.538 66.667 0.00 0.00 0.00 3.11
1141 1498 1.694525 CCCCTCCCTCCCTCCTTTC 60.695 68.421 0.00 0.00 0.00 2.62
1142 1499 1.398234 CCCTCCCTCCCTCCTTTCT 59.602 63.158 0.00 0.00 0.00 2.52
1143 1500 0.642710 CCCTCCCTCCCTCCTTTCTA 59.357 60.000 0.00 0.00 0.00 2.10
1144 1501 1.413808 CCCTCCCTCCCTCCTTTCTAG 60.414 61.905 0.00 0.00 0.00 2.43
1145 1502 1.292546 CCTCCCTCCCTCCTTTCTAGT 59.707 57.143 0.00 0.00 0.00 2.57
1146 1503 2.518834 CCTCCCTCCCTCCTTTCTAGTA 59.481 54.545 0.00 0.00 0.00 1.82
1217 1586 0.969149 ATTCTGACCGTCTGCTGTGA 59.031 50.000 0.00 0.00 0.00 3.58
1337 1706 3.154827 TCCTTTTGGTAGCCTCCTTTG 57.845 47.619 0.00 0.00 41.38 2.77
1340 1709 0.407918 TTTGGTAGCCTCCTTTGGGG 59.592 55.000 0.00 0.00 0.00 4.96
1342 1711 1.618447 GGTAGCCTCCTTTGGGGGA 60.618 63.158 6.71 0.00 34.18 4.81
1348 1717 2.235570 CTCCTTTGGGGGAGGGATC 58.764 63.158 2.84 0.00 46.63 3.36
1353 1722 0.842905 TTTGGGGGAGGGATCGTTCA 60.843 55.000 0.00 0.00 0.00 3.18
1372 1741 2.076100 CATCGTTGAGCTGCCTTGTTA 58.924 47.619 0.00 0.00 0.00 2.41
1382 1751 6.234920 TGAGCTGCCTTGTTATAGTTGTAAA 58.765 36.000 0.00 0.00 0.00 2.01
1384 1753 7.393234 TGAGCTGCCTTGTTATAGTTGTAAAAT 59.607 33.333 0.00 0.00 0.00 1.82
1407 1781 2.925578 TTCAGTTGTGCTGCATATGC 57.074 45.000 21.09 21.09 44.66 3.14
1410 1784 1.064621 GTTGTGCTGCATATGCCCG 59.935 57.895 24.54 16.17 41.18 6.13
1412 1786 2.203195 GTGCTGCATATGCCCGGA 60.203 61.111 24.54 13.96 41.18 5.14
1414 1788 0.321564 GTGCTGCATATGCCCGGATA 60.322 55.000 24.54 4.10 41.18 2.59
1415 1789 0.399833 TGCTGCATATGCCCGGATAA 59.600 50.000 24.54 3.35 41.18 1.75
1422 1796 6.449635 TGCATATGCCCGGATAATTATTTC 57.550 37.500 24.54 0.00 41.18 2.17
1455 1833 3.520290 CATCCATGCTTGCTTGTCATT 57.480 42.857 7.53 0.00 0.00 2.57
1461 1839 2.998772 TGCTTGCTTGTCATTTTCGAC 58.001 42.857 0.00 0.00 36.40 4.20
1469 1847 4.558496 GCTTGTCATTTTCGACATTGGGAA 60.558 41.667 0.00 0.00 45.03 3.97
1471 1849 5.119931 TGTCATTTTCGACATTGGGAAAG 57.880 39.130 0.00 0.00 40.94 2.62
1472 1850 3.920412 GTCATTTTCGACATTGGGAAAGC 59.080 43.478 0.00 0.00 35.88 3.51
1473 1851 3.056891 TCATTTTCGACATTGGGAAAGCC 60.057 43.478 0.00 0.00 34.03 4.35
1474 1852 2.286365 TTTCGACATTGGGAAAGCCT 57.714 45.000 0.00 0.00 0.00 4.58
1475 1853 1.821216 TTCGACATTGGGAAAGCCTC 58.179 50.000 0.00 0.00 0.00 4.70
1476 1854 0.035439 TCGACATTGGGAAAGCCTCC 60.035 55.000 0.00 0.00 44.54 4.30
1481 1859 2.833943 ACATTGGGAAAGCCTCCAAATC 59.166 45.455 2.59 0.00 43.61 2.17
1482 1860 3.102204 CATTGGGAAAGCCTCCAAATCT 58.898 45.455 2.59 0.00 43.61 2.40
1483 1861 3.516700 CATTGGGAAAGCCTCCAAATCTT 59.483 43.478 2.59 0.00 43.61 2.40
1501 1914 8.726988 CCAAATCTTCTTCTTTTTATCACCGTA 58.273 33.333 0.00 0.00 0.00 4.02
1624 2145 9.434559 GCAAAATCGTCTTATATTTAGGAACAC 57.565 33.333 0.00 0.00 0.00 3.32
1736 2257 7.222161 ACGAGATACCAGTAATATTTTTCCCC 58.778 38.462 0.00 0.00 0.00 4.81
1739 2260 9.286170 GAGATACCAGTAATATTTTTCCCCTTC 57.714 37.037 0.00 0.00 0.00 3.46
1785 2306 1.785768 TGCTTGCACATGTCAAATGC 58.214 45.000 0.00 5.52 39.88 3.56
1895 2416 4.402155 CCAAGCTACATCAGAGACTCTTCT 59.598 45.833 0.98 0.00 33.37 2.85
1931 2452 4.091509 GTCTACGATGTAACTGGCAAGTTG 59.908 45.833 17.16 1.63 46.30 3.16
1965 2494 5.237344 ACAAAATACTCGCCAGCAGAATATC 59.763 40.000 0.00 0.00 0.00 1.63
1977 2506 6.429385 GCCAGCAGAATATCTAGCTAATTTGT 59.571 38.462 0.00 0.00 32.43 2.83
2037 2572 6.509418 TTTTCAAACTGTTTGCTACTGACT 57.491 33.333 24.62 0.00 40.43 3.41
2038 2573 7.618502 TTTTCAAACTGTTTGCTACTGACTA 57.381 32.000 24.62 5.13 40.43 2.59
2052 2587 5.174761 GCTACTGACTAATGAAATCTGAGCG 59.825 44.000 0.00 0.00 0.00 5.03
2078 2657 8.778358 GGACATATAGATGAATCAGTTTGAACC 58.222 37.037 3.93 0.00 36.48 3.62
2085 2664 8.130671 AGATGAATCAGTTTGAACCATTTCAT 57.869 30.769 11.97 11.97 41.50 2.57
2101 2680 6.127026 ACCATTTCATCTGAGGGTACTTAGTC 60.127 42.308 0.00 0.00 32.51 2.59
2152 2731 9.438228 CTGTATCTGATGATATGAAGAAAGCAT 57.562 33.333 0.00 0.00 37.48 3.79
2153 2732 9.216117 TGTATCTGATGATATGAAGAAAGCATG 57.784 33.333 0.00 0.00 37.48 4.06
2192 2775 1.475280 GTACACTGACGGCCTCATACA 59.525 52.381 0.00 0.00 0.00 2.29
2263 2852 1.374125 CGATGAGGTGAACACGGCA 60.374 57.895 0.00 0.00 0.00 5.69
2332 2921 2.163010 CGTTGACCAGAGGTACGTACAT 59.837 50.000 26.02 20.48 35.25 2.29
2349 2942 9.565213 GTACGTACATTATACATATCCCTGAAC 57.435 37.037 20.67 0.00 0.00 3.18
2358 2951 1.204146 TATCCCTGAACCTCTGTGGC 58.796 55.000 0.00 0.00 40.22 5.01
2404 3000 4.456222 TGGCGATTCATTTTCTTCCGTTTA 59.544 37.500 0.00 0.00 0.00 2.01
2454 3055 3.771160 CCCACGGACGAAGGGGAG 61.771 72.222 15.61 0.00 43.57 4.30
2570 3213 9.774742 ATGTAGAAGAATTTATTTTCACTTCGC 57.225 29.630 0.00 0.00 38.74 4.70
2571 3214 8.999431 TGTAGAAGAATTTATTTTCACTTCGCT 58.001 29.630 0.00 0.00 38.74 4.93
2572 3215 9.827411 GTAGAAGAATTTATTTTCACTTCGCTT 57.173 29.630 0.00 0.00 38.74 4.68
2573 3216 8.733857 AGAAGAATTTATTTTCACTTCGCTTG 57.266 30.769 0.00 0.00 38.74 4.01
2574 3217 7.809806 AGAAGAATTTATTTTCACTTCGCTTGG 59.190 33.333 0.00 0.00 38.74 3.61
2575 3218 6.389906 AGAATTTATTTTCACTTCGCTTGGG 58.610 36.000 0.00 0.00 0.00 4.12
2576 3219 3.569250 TTATTTTCACTTCGCTTGGGC 57.431 42.857 0.00 0.00 0.00 5.36
2577 3220 1.327303 ATTTTCACTTCGCTTGGGCA 58.673 45.000 0.00 0.00 38.60 5.36
2578 3221 1.107114 TTTTCACTTCGCTTGGGCAA 58.893 45.000 0.00 0.00 38.60 4.52
2579 3222 0.667993 TTTCACTTCGCTTGGGCAAG 59.332 50.000 0.00 0.00 41.24 4.01
2644 3287 2.359975 CGGAACCTGGAACCCTGC 60.360 66.667 0.00 0.00 0.00 4.85
2645 3288 2.895424 CGGAACCTGGAACCCTGCT 61.895 63.158 0.00 0.00 0.00 4.24
2646 3289 1.303643 GGAACCTGGAACCCTGCTG 60.304 63.158 0.00 0.00 0.00 4.41
2698 3341 4.864334 CTGCCTGGGATGGACGCC 62.864 72.222 0.00 0.00 0.00 5.68
2746 3389 1.077429 GGACATCAACCTGAGGCCC 60.077 63.158 0.00 0.00 30.14 5.80
3012 3699 5.654603 ACTACAACGACTTGGTGATGATA 57.345 39.130 0.00 0.00 0.00 2.15
3036 3723 2.096713 CGGAATGCTGCTTACTAATCGC 60.097 50.000 0.00 0.00 0.00 4.58
3037 3724 3.134458 GGAATGCTGCTTACTAATCGCT 58.866 45.455 0.00 0.00 0.00 4.93
3040 3727 5.333416 GGAATGCTGCTTACTAATCGCTAAC 60.333 44.000 0.00 0.00 0.00 2.34
3054 3741 3.434637 TCGCTAACGACGGTTAATTACC 58.565 45.455 0.00 0.00 45.12 2.85
3055 3742 3.128589 TCGCTAACGACGGTTAATTACCT 59.871 43.478 0.00 0.00 45.12 3.08
3056 3743 3.859386 CGCTAACGACGGTTAATTACCTT 59.141 43.478 0.00 0.00 43.11 3.50
3057 3744 5.034152 CGCTAACGACGGTTAATTACCTTA 58.966 41.667 0.00 0.00 43.11 2.69
3058 3745 5.052370 CGCTAACGACGGTTAATTACCTTAC 60.052 44.000 0.00 0.00 43.11 2.34
3059 3746 5.804979 GCTAACGACGGTTAATTACCTTACA 59.195 40.000 0.00 0.00 45.40 2.41
3060 3747 6.476706 GCTAACGACGGTTAATTACCTTACAT 59.523 38.462 0.00 0.00 45.40 2.29
3061 3748 7.010460 GCTAACGACGGTTAATTACCTTACATT 59.990 37.037 0.00 0.00 45.40 2.71
3062 3749 6.651755 ACGACGGTTAATTACCTTACATTG 57.348 37.500 0.00 0.00 45.40 2.82
3063 3750 6.165577 ACGACGGTTAATTACCTTACATTGT 58.834 36.000 0.00 0.00 45.40 2.71
3064 3751 6.091169 ACGACGGTTAATTACCTTACATTGTG 59.909 38.462 0.00 0.00 45.40 3.33
3065 3752 6.091169 CGACGGTTAATTACCTTACATTGTGT 59.909 38.462 0.00 0.00 45.40 3.72
3066 3753 7.136289 ACGGTTAATTACCTTACATTGTGTG 57.864 36.000 0.00 0.00 45.40 3.82
3067 3754 6.935771 ACGGTTAATTACCTTACATTGTGTGA 59.064 34.615 0.00 0.00 45.40 3.58
3068 3755 7.118680 ACGGTTAATTACCTTACATTGTGTGAG 59.881 37.037 0.00 0.00 45.40 3.51
3069 3756 7.248437 GGTTAATTACCTTACATTGTGTGAGC 58.752 38.462 0.00 0.00 44.10 4.26
3070 3757 7.120726 GGTTAATTACCTTACATTGTGTGAGCT 59.879 37.037 0.00 0.00 44.10 4.09
3071 3758 9.158233 GTTAATTACCTTACATTGTGTGAGCTA 57.842 33.333 0.00 0.00 33.21 3.32
3072 3759 7.611213 AATTACCTTACATTGTGTGAGCTAC 57.389 36.000 0.00 0.00 33.21 3.58
3073 3760 4.891992 ACCTTACATTGTGTGAGCTACT 57.108 40.909 0.00 0.00 33.21 2.57
3074 3761 4.822026 ACCTTACATTGTGTGAGCTACTC 58.178 43.478 0.00 0.00 33.21 2.59
3075 3762 4.528596 ACCTTACATTGTGTGAGCTACTCT 59.471 41.667 0.00 0.00 33.21 3.24
3076 3763 5.105752 CCTTACATTGTGTGAGCTACTCTC 58.894 45.833 0.00 0.00 42.23 3.20
3077 3764 5.105554 CCTTACATTGTGTGAGCTACTCTCT 60.106 44.000 0.00 0.00 42.38 3.10
3078 3765 4.448537 ACATTGTGTGAGCTACTCTCTC 57.551 45.455 0.00 0.00 42.38 3.20
3079 3766 3.194542 ACATTGTGTGAGCTACTCTCTCC 59.805 47.826 0.00 0.00 42.38 3.71
3080 3767 1.454201 TGTGTGAGCTACTCTCTCCG 58.546 55.000 0.00 0.00 42.38 4.63
3081 3768 1.271434 TGTGTGAGCTACTCTCTCCGT 60.271 52.381 0.00 0.00 42.38 4.69
3082 3769 1.813786 GTGTGAGCTACTCTCTCCGTT 59.186 52.381 0.00 0.00 42.38 4.44
3083 3770 3.008330 GTGTGAGCTACTCTCTCCGTTA 58.992 50.000 0.00 0.00 42.38 3.18
3084 3771 3.064271 GTGTGAGCTACTCTCTCCGTTAG 59.936 52.174 0.00 0.00 42.38 2.34
3085 3772 3.055312 TGTGAGCTACTCTCTCCGTTAGA 60.055 47.826 0.00 0.00 42.38 2.10
3086 3773 4.131596 GTGAGCTACTCTCTCCGTTAGAT 58.868 47.826 0.00 0.00 42.38 1.98
3087 3774 4.577283 GTGAGCTACTCTCTCCGTTAGATT 59.423 45.833 0.00 0.00 42.38 2.40
3088 3775 4.817464 TGAGCTACTCTCTCCGTTAGATTC 59.183 45.833 0.00 0.00 42.38 2.52
3089 3776 5.043737 AGCTACTCTCTCCGTTAGATTCT 57.956 43.478 0.00 0.00 32.41 2.40
3090 3777 6.177310 AGCTACTCTCTCCGTTAGATTCTA 57.823 41.667 0.00 0.00 32.41 2.10
3091 3778 5.993441 AGCTACTCTCTCCGTTAGATTCTAC 59.007 44.000 0.00 0.00 32.41 2.59
3092 3779 5.993441 GCTACTCTCTCCGTTAGATTCTACT 59.007 44.000 0.00 0.00 32.41 2.57
3093 3780 7.015487 AGCTACTCTCTCCGTTAGATTCTACTA 59.985 40.741 0.00 0.00 32.41 1.82
3094 3781 7.820872 GCTACTCTCTCCGTTAGATTCTACTAT 59.179 40.741 0.00 0.00 32.41 2.12
3095 3782 7.972832 ACTCTCTCCGTTAGATTCTACTATG 57.027 40.000 0.00 0.00 32.41 2.23
3096 3783 7.737869 ACTCTCTCCGTTAGATTCTACTATGA 58.262 38.462 0.00 0.00 32.41 2.15
3097 3784 8.212312 ACTCTCTCCGTTAGATTCTACTATGAA 58.788 37.037 0.00 0.00 32.41 2.57
3098 3785 9.226606 CTCTCTCCGTTAGATTCTACTATGAAT 57.773 37.037 0.00 0.00 39.14 2.57
3108 3795 6.872628 ATTCTACTATGAATCACGTACGGA 57.127 37.500 21.06 14.09 31.72 4.69
3109 3796 6.872628 TTCTACTATGAATCACGTACGGAT 57.127 37.500 21.06 15.72 0.00 4.18
3110 3797 6.237313 TCTACTATGAATCACGTACGGATG 57.763 41.667 21.06 9.94 0.00 3.51
3111 3798 4.913335 ACTATGAATCACGTACGGATGT 57.087 40.909 21.06 9.78 0.00 3.06
3112 3799 6.930722 TCTACTATGAATCACGTACGGATGTA 59.069 38.462 21.06 14.08 0.00 2.29
3113 3800 6.570672 ACTATGAATCACGTACGGATGTAT 57.429 37.500 21.06 16.58 32.11 2.29
3114 3801 7.677454 ACTATGAATCACGTACGGATGTATA 57.323 36.000 21.06 16.76 32.11 1.47
3115 3802 8.277490 ACTATGAATCACGTACGGATGTATAT 57.723 34.615 21.06 12.71 32.11 0.86
3116 3803 9.387257 ACTATGAATCACGTACGGATGTATATA 57.613 33.333 21.06 13.06 32.11 0.86
3117 3804 9.865484 CTATGAATCACGTACGGATGTATATAG 57.135 37.037 21.06 16.97 32.11 1.31
3118 3805 7.910441 TGAATCACGTACGGATGTATATAGA 57.090 36.000 21.06 2.02 32.11 1.98
3119 3806 8.502105 TGAATCACGTACGGATGTATATAGAT 57.498 34.615 21.06 0.00 32.11 1.98
3120 3807 8.395633 TGAATCACGTACGGATGTATATAGATG 58.604 37.037 21.06 3.78 32.11 2.90
3121 3808 6.115450 TCACGTACGGATGTATATAGATGC 57.885 41.667 21.06 0.00 32.11 3.91
3122 3809 5.644636 TCACGTACGGATGTATATAGATGCA 59.355 40.000 21.06 0.00 32.11 3.96
3123 3810 6.317893 TCACGTACGGATGTATATAGATGCAT 59.682 38.462 21.06 0.00 40.68 3.96
3124 3811 6.972901 CACGTACGGATGTATATAGATGCATT 59.027 38.462 21.06 1.23 38.38 3.56
3125 3812 7.488150 CACGTACGGATGTATATAGATGCATTT 59.512 37.037 21.06 0.00 38.38 2.32
3126 3813 8.033038 ACGTACGGATGTATATAGATGCATTTT 58.967 33.333 21.06 0.00 38.38 1.82
3127 3814 9.511144 CGTACGGATGTATATAGATGCATTTTA 57.489 33.333 7.57 0.00 38.38 1.52
3130 3817 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
3166 3853 8.050778 TCATTTTGTTTCATATGTAGTCACCC 57.949 34.615 1.90 0.00 0.00 4.61
3167 3854 7.888021 TCATTTTGTTTCATATGTAGTCACCCT 59.112 33.333 1.90 0.00 0.00 4.34
3168 3855 9.173021 CATTTTGTTTCATATGTAGTCACCCTA 57.827 33.333 1.90 0.00 0.00 3.53
3169 3856 9.747898 ATTTTGTTTCATATGTAGTCACCCTAA 57.252 29.630 1.90 0.00 0.00 2.69
3170 3857 9.747898 TTTTGTTTCATATGTAGTCACCCTAAT 57.252 29.630 1.90 0.00 0.00 1.73
3171 3858 8.731275 TTGTTTCATATGTAGTCACCCTAATG 57.269 34.615 1.90 0.00 0.00 1.90
3172 3859 7.279615 TGTTTCATATGTAGTCACCCTAATGG 58.720 38.462 1.90 0.00 41.37 3.16
3173 3860 7.126573 TGTTTCATATGTAGTCACCCTAATGGA 59.873 37.037 1.90 0.00 38.00 3.41
3174 3861 7.684317 TTCATATGTAGTCACCCTAATGGAA 57.316 36.000 1.90 0.00 38.00 3.53
3175 3862 7.872061 TCATATGTAGTCACCCTAATGGAAT 57.128 36.000 1.90 0.00 38.00 3.01
3176 3863 7.907389 TCATATGTAGTCACCCTAATGGAATC 58.093 38.462 1.90 0.00 38.00 2.52
3177 3864 7.734865 TCATATGTAGTCACCCTAATGGAATCT 59.265 37.037 1.90 0.00 38.00 2.40
3178 3865 5.871396 TGTAGTCACCCTAATGGAATCTC 57.129 43.478 0.00 0.00 38.00 2.75
3179 3866 5.529289 TGTAGTCACCCTAATGGAATCTCT 58.471 41.667 0.00 0.00 38.00 3.10
3180 3867 6.679542 TGTAGTCACCCTAATGGAATCTCTA 58.320 40.000 0.00 0.00 38.00 2.43
3181 3868 7.306013 TGTAGTCACCCTAATGGAATCTCTAT 58.694 38.462 0.00 0.00 38.00 1.98
3182 3869 8.453681 TGTAGTCACCCTAATGGAATCTCTATA 58.546 37.037 0.00 0.00 38.00 1.31
3183 3870 9.310449 GTAGTCACCCTAATGGAATCTCTATAA 57.690 37.037 0.00 0.00 38.00 0.98
3184 3871 8.798975 AGTCACCCTAATGGAATCTCTATAAA 57.201 34.615 0.00 0.00 38.00 1.40
3185 3872 8.875168 AGTCACCCTAATGGAATCTCTATAAAG 58.125 37.037 0.00 0.00 38.00 1.85
3186 3873 8.871125 GTCACCCTAATGGAATCTCTATAAAGA 58.129 37.037 0.00 0.00 38.00 2.52
3187 3874 8.871125 TCACCCTAATGGAATCTCTATAAAGAC 58.129 37.037 0.00 0.00 38.00 3.01
3188 3875 8.875168 CACCCTAATGGAATCTCTATAAAGACT 58.125 37.037 0.00 0.00 38.00 3.24
3189 3876 9.453830 ACCCTAATGGAATCTCTATAAAGACTT 57.546 33.333 0.00 0.00 38.00 3.01
3207 3894 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3208 3895 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3209 3896 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3210 3897 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3211 3898 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3212 3899 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
3213 3900 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
3214 3901 3.967467 TTAGGAACGGAGGGAGTAGAT 57.033 47.619 0.00 0.00 0.00 1.98
3215 3902 2.074729 AGGAACGGAGGGAGTAGATG 57.925 55.000 0.00 0.00 0.00 2.90
3216 3903 1.288335 AGGAACGGAGGGAGTAGATGT 59.712 52.381 0.00 0.00 0.00 3.06
3217 3904 1.682323 GGAACGGAGGGAGTAGATGTC 59.318 57.143 0.00 0.00 0.00 3.06
3218 3905 2.376109 GAACGGAGGGAGTAGATGTCA 58.624 52.381 0.00 0.00 0.00 3.58
3219 3906 2.757894 ACGGAGGGAGTAGATGTCAT 57.242 50.000 0.00 0.00 0.00 3.06
3220 3907 2.311463 ACGGAGGGAGTAGATGTCATG 58.689 52.381 0.00 0.00 0.00 3.07
3221 3908 2.311463 CGGAGGGAGTAGATGTCATGT 58.689 52.381 0.00 0.00 0.00 3.21
3222 3909 2.695666 CGGAGGGAGTAGATGTCATGTT 59.304 50.000 0.00 0.00 0.00 2.71
3223 3910 3.133003 CGGAGGGAGTAGATGTCATGTTT 59.867 47.826 0.00 0.00 0.00 2.83
3224 3911 4.698575 GGAGGGAGTAGATGTCATGTTTC 58.301 47.826 0.00 0.00 0.00 2.78
3225 3912 4.407296 GGAGGGAGTAGATGTCATGTTTCT 59.593 45.833 0.00 0.00 0.00 2.52
3226 3913 5.350504 AGGGAGTAGATGTCATGTTTCTG 57.649 43.478 0.00 0.00 0.00 3.02
3227 3914 3.873952 GGGAGTAGATGTCATGTTTCTGC 59.126 47.826 0.00 0.00 0.00 4.26
3228 3915 3.873952 GGAGTAGATGTCATGTTTCTGCC 59.126 47.826 0.00 0.00 0.00 4.85
3229 3916 4.383552 GGAGTAGATGTCATGTTTCTGCCT 60.384 45.833 0.00 0.00 0.00 4.75
3230 3917 5.171339 AGTAGATGTCATGTTTCTGCCTT 57.829 39.130 0.00 0.00 0.00 4.35
3231 3918 4.940046 AGTAGATGTCATGTTTCTGCCTTG 59.060 41.667 0.00 0.00 0.00 3.61
3232 3919 2.490903 AGATGTCATGTTTCTGCCTTGC 59.509 45.455 0.00 0.00 0.00 4.01
3233 3920 1.689984 TGTCATGTTTCTGCCTTGCA 58.310 45.000 0.00 0.00 36.92 4.08
3234 3921 2.030371 TGTCATGTTTCTGCCTTGCAA 58.970 42.857 0.00 0.00 38.41 4.08
3235 3922 2.429971 TGTCATGTTTCTGCCTTGCAAA 59.570 40.909 0.00 0.00 38.41 3.68
3236 3923 3.118847 TGTCATGTTTCTGCCTTGCAAAA 60.119 39.130 0.00 0.00 38.41 2.44
3237 3924 4.060205 GTCATGTTTCTGCCTTGCAAAAT 58.940 39.130 0.00 0.00 38.41 1.82
3238 3925 4.512571 GTCATGTTTCTGCCTTGCAAAATT 59.487 37.500 0.00 0.00 38.41 1.82
3300 3987 5.527582 GGTTTGCAGAAAAGACTCTTCTACA 59.472 40.000 0.00 0.00 31.84 2.74
3317 4004 5.461032 TCTACAAATTTGTGCCCGAAAAT 57.539 34.783 29.72 5.12 42.31 1.82
3344 4031 7.559170 ACTGATTCTTAGCCTAATCTTTTGCAT 59.441 33.333 0.00 0.00 34.00 3.96
3441 4128 0.574922 CGGTCTTTTTGCCAAAACGC 59.425 50.000 1.25 0.00 0.00 4.84
3483 4171 4.150516 TCTCCCCTGAAAAACTACCCTA 57.849 45.455 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.358957 TCGCCATGTGAAGATCCTTTG 58.641 47.619 0.00 0.00 0.00 2.77
15 16 2.787473 TCGCCATGTGAAGATCCTTT 57.213 45.000 0.00 0.00 0.00 3.11
32 33 3.036633 CGACAACCTTACTCATCGATCG 58.963 50.000 9.36 9.36 0.00 3.69
104 106 3.211045 CCCATCACTAATACAAACCGGG 58.789 50.000 6.32 0.00 0.00 5.73
105 107 3.881220 ACCCATCACTAATACAAACCGG 58.119 45.455 0.00 0.00 0.00 5.28
106 108 7.066525 ACAAATACCCATCACTAATACAAACCG 59.933 37.037 0.00 0.00 0.00 4.44
114 116 6.207691 GTGCAACAAATACCCATCACTAAT 57.792 37.500 0.00 0.00 36.32 1.73
257 259 4.131596 GGAACATAACCTAGCGGCAAATA 58.868 43.478 1.45 0.00 0.00 1.40
264 266 3.364889 TCATCGGAACATAACCTAGCG 57.635 47.619 0.00 0.00 0.00 4.26
298 301 8.975410 ACGGTGGCTAAAAGATAAAAATAAAC 57.025 30.769 0.00 0.00 0.00 2.01
337 340 5.346522 ACGCAGCTAGGTTTGTACTATTAC 58.653 41.667 0.00 0.00 0.00 1.89
343 346 1.916000 CGTACGCAGCTAGGTTTGTAC 59.084 52.381 17.50 17.50 0.00 2.90
344 347 1.541147 ACGTACGCAGCTAGGTTTGTA 59.459 47.619 16.72 0.00 0.00 2.41
345 348 0.316204 ACGTACGCAGCTAGGTTTGT 59.684 50.000 16.72 0.00 0.00 2.83
360 363 0.673333 TCCGAGGCTGTAACGACGTA 60.673 55.000 0.00 0.00 0.00 3.57
361 364 1.919956 CTCCGAGGCTGTAACGACGT 61.920 60.000 0.00 0.00 0.00 4.34
363 366 1.516603 GCTCCGAGGCTGTAACGAC 60.517 63.158 0.00 0.00 0.00 4.34
389 392 3.074504 GTCCAGTGCGACGATGTAATA 57.925 47.619 0.00 0.00 0.00 0.98
405 589 2.073056 CGATGGAAAATCACACGTCCA 58.927 47.619 0.00 0.00 44.07 4.02
407 591 2.993899 AGTCGATGGAAAATCACACGTC 59.006 45.455 0.00 0.00 0.00 4.34
414 598 3.009723 TCAGGCAAGTCGATGGAAAATC 58.990 45.455 0.00 0.00 0.00 2.17
415 599 2.749621 GTCAGGCAAGTCGATGGAAAAT 59.250 45.455 0.00 0.00 0.00 1.82
429 613 1.271840 GGGTACATGAGGGTCAGGCA 61.272 60.000 0.00 0.00 30.14 4.75
460 644 3.741476 GGCAAAGCTCAGTGGCCG 61.741 66.667 0.00 0.00 34.56 6.13
695 1002 9.803315 AAGTTTGTATTCTTTCTTGGAACTTTC 57.197 29.630 0.00 0.00 32.67 2.62
702 1009 8.413229 TCCTTCAAAGTTTGTATTCTTTCTTGG 58.587 33.333 15.08 1.12 32.52 3.61
730 1038 3.792401 TCCGTCCATGCAAATACTACTG 58.208 45.455 0.00 0.00 0.00 2.74
791 1114 1.203313 GCGACTTTGGACGTTTCCG 59.797 57.895 0.00 0.00 46.37 4.30
836 1159 2.997303 GACGGAAGAAGAAGAAGAAGGC 59.003 50.000 0.00 0.00 0.00 4.35
890 1220 4.357947 TGGAGGTGCGTGCTCGAC 62.358 66.667 13.13 7.22 39.71 4.20
897 1227 4.039357 CGAGTCGTGGAGGTGCGT 62.039 66.667 3.82 0.00 0.00 5.24
898 1228 2.921538 GATCGAGTCGTGGAGGTGCG 62.922 65.000 13.12 0.00 0.00 5.34
899 1229 1.226717 GATCGAGTCGTGGAGGTGC 60.227 63.158 13.12 0.00 0.00 5.01
900 1230 1.313091 TGGATCGAGTCGTGGAGGTG 61.313 60.000 13.12 0.00 0.00 4.00
901 1231 0.611062 TTGGATCGAGTCGTGGAGGT 60.611 55.000 13.12 0.00 0.00 3.85
902 1232 0.530744 TTTGGATCGAGTCGTGGAGG 59.469 55.000 13.12 0.00 0.00 4.30
903 1233 2.159240 TGATTTGGATCGAGTCGTGGAG 60.159 50.000 13.12 0.00 34.91 3.86
904 1234 1.822371 TGATTTGGATCGAGTCGTGGA 59.178 47.619 13.12 0.00 34.91 4.02
905 1235 1.927174 GTGATTTGGATCGAGTCGTGG 59.073 52.381 13.12 0.00 34.91 4.94
906 1236 2.854777 GAGTGATTTGGATCGAGTCGTG 59.145 50.000 13.12 0.00 34.91 4.35
907 1237 2.159226 GGAGTGATTTGGATCGAGTCGT 60.159 50.000 13.12 0.00 34.91 4.34
908 1238 2.464865 GGAGTGATTTGGATCGAGTCG 58.535 52.381 6.09 6.09 34.91 4.18
909 1239 2.464865 CGGAGTGATTTGGATCGAGTC 58.535 52.381 0.00 0.00 34.91 3.36
910 1240 1.137086 CCGGAGTGATTTGGATCGAGT 59.863 52.381 0.00 0.00 34.91 4.18
911 1241 1.539065 CCCGGAGTGATTTGGATCGAG 60.539 57.143 0.73 0.00 34.91 4.04
912 1242 0.464036 CCCGGAGTGATTTGGATCGA 59.536 55.000 0.73 0.00 34.91 3.59
913 1243 0.532862 CCCCGGAGTGATTTGGATCG 60.533 60.000 0.73 0.00 34.91 3.69
914 1244 0.837272 TCCCCGGAGTGATTTGGATC 59.163 55.000 0.73 0.00 0.00 3.36
929 1277 4.452733 CCGAGTTGGACGCTCCCC 62.453 72.222 0.00 0.00 42.00 4.81
936 1284 0.603569 TCTTCTGCTCCGAGTTGGAC 59.396 55.000 0.00 0.00 43.74 4.02
1123 1480 1.694525 GAAAGGAGGGAGGGAGGGG 60.695 68.421 0.00 0.00 0.00 4.79
1126 1483 2.858787 ACTAGAAAGGAGGGAGGGAG 57.141 55.000 0.00 0.00 0.00 4.30
1127 1484 4.691935 CGAATACTAGAAAGGAGGGAGGGA 60.692 50.000 0.00 0.00 0.00 4.20
1129 1486 4.471548 TCGAATACTAGAAAGGAGGGAGG 58.528 47.826 0.00 0.00 0.00 4.30
1132 1489 5.467063 GCAAATCGAATACTAGAAAGGAGGG 59.533 44.000 0.00 0.00 0.00 4.30
1137 1494 7.467623 AGCTTTGCAAATCGAATACTAGAAAG 58.532 34.615 13.23 0.00 0.00 2.62
1138 1495 7.377766 AGCTTTGCAAATCGAATACTAGAAA 57.622 32.000 13.23 0.00 0.00 2.52
1139 1496 6.037172 GGAGCTTTGCAAATCGAATACTAGAA 59.963 38.462 13.23 0.00 0.00 2.10
1140 1497 5.523916 GGAGCTTTGCAAATCGAATACTAGA 59.476 40.000 13.23 0.00 0.00 2.43
1141 1498 5.277538 GGGAGCTTTGCAAATCGAATACTAG 60.278 44.000 13.23 0.00 0.00 2.57
1142 1499 4.574828 GGGAGCTTTGCAAATCGAATACTA 59.425 41.667 13.23 0.00 0.00 1.82
1143 1500 3.378427 GGGAGCTTTGCAAATCGAATACT 59.622 43.478 13.23 2.00 0.00 2.12
1144 1501 3.695816 GGGAGCTTTGCAAATCGAATAC 58.304 45.455 13.23 0.00 0.00 1.89
1145 1502 2.354510 CGGGAGCTTTGCAAATCGAATA 59.645 45.455 13.23 0.00 0.00 1.75
1146 1503 1.133025 CGGGAGCTTTGCAAATCGAAT 59.867 47.619 13.23 0.00 0.00 3.34
1337 1706 1.755384 GATGAACGATCCCTCCCCC 59.245 63.158 0.00 0.00 0.00 5.40
1340 1709 1.136305 TCAACGATGAACGATCCCTCC 59.864 52.381 0.00 0.00 45.77 4.30
1342 1711 1.471676 GCTCAACGATGAACGATCCCT 60.472 52.381 0.00 0.00 45.77 4.20
1343 1712 0.931005 GCTCAACGATGAACGATCCC 59.069 55.000 0.00 0.00 45.77 3.85
1345 1714 1.005557 GCAGCTCAACGATGAACGATC 60.006 52.381 0.00 0.00 45.77 3.69
1346 1715 1.002366 GCAGCTCAACGATGAACGAT 58.998 50.000 0.00 0.00 45.77 3.73
1353 1722 2.472695 TAACAAGGCAGCTCAACGAT 57.527 45.000 0.00 0.00 0.00 3.73
1414 1788 8.902806 TGGATGCGTCAGAATTTAGAAATAATT 58.097 29.630 8.47 0.00 0.00 1.40
1415 1789 8.450578 TGGATGCGTCAGAATTTAGAAATAAT 57.549 30.769 8.47 0.00 0.00 1.28
1422 1796 3.881795 GCATGGATGCGTCAGAATTTAG 58.118 45.455 8.47 0.00 44.67 1.85
1439 1813 3.362831 GTCGAAAATGACAAGCAAGCATG 59.637 43.478 0.00 0.00 38.75 4.06
1450 1824 3.920412 GCTTTCCCAATGTCGAAAATGAC 59.080 43.478 0.00 0.00 39.37 3.06
1451 1825 3.056891 GGCTTTCCCAATGTCGAAAATGA 60.057 43.478 0.00 0.00 0.00 2.57
1455 1833 2.159382 GAGGCTTTCCCAATGTCGAAA 58.841 47.619 0.00 0.00 35.39 3.46
1461 1839 3.102204 AGATTTGGAGGCTTTCCCAATG 58.898 45.455 6.95 0.00 46.19 2.82
1469 1847 6.737720 AAAAAGAAGAAGATTTGGAGGCTT 57.262 33.333 0.00 0.00 0.00 4.35
1471 1849 7.757173 GTGATAAAAAGAAGAAGATTTGGAGGC 59.243 37.037 0.00 0.00 0.00 4.70
1472 1850 8.246871 GGTGATAAAAAGAAGAAGATTTGGAGG 58.753 37.037 0.00 0.00 0.00 4.30
1473 1851 7.965107 CGGTGATAAAAAGAAGAAGATTTGGAG 59.035 37.037 0.00 0.00 0.00 3.86
1474 1852 7.447238 ACGGTGATAAAAAGAAGAAGATTTGGA 59.553 33.333 0.00 0.00 0.00 3.53
1475 1853 7.593825 ACGGTGATAAAAAGAAGAAGATTTGG 58.406 34.615 0.00 0.00 0.00 3.28
1624 2145 6.289064 AGAAACAGTTAAGAACTACACCCTG 58.711 40.000 0.00 0.00 40.46 4.45
1736 2257 2.419851 GCATCTCAAGTCCTCAGGGAAG 60.420 54.545 0.00 0.00 44.15 3.46
1739 2260 0.179936 GGCATCTCAAGTCCTCAGGG 59.820 60.000 0.00 0.00 0.00 4.45
1795 2316 6.485648 AGTTACAAACAACTATGTCACCCTTC 59.514 38.462 0.00 0.00 39.40 3.46
1895 2416 1.426621 GTAGACGATGACCGCGACA 59.573 57.895 8.23 8.22 43.32 4.35
1931 2452 5.065474 TGGCGAGTATTTTGTAATAACAGGC 59.935 40.000 0.00 0.00 36.83 4.85
1938 2459 4.513442 TCTGCTGGCGAGTATTTTGTAAT 58.487 39.130 0.00 0.00 0.00 1.89
1939 2460 3.932822 TCTGCTGGCGAGTATTTTGTAA 58.067 40.909 0.00 0.00 0.00 2.41
1977 2506 6.526526 TGGAACACTACTTTGTATTGCAGTA 58.473 36.000 0.00 0.00 0.00 2.74
1984 2513 8.918202 TTTCAGATTGGAACACTACTTTGTAT 57.082 30.769 0.00 0.00 39.29 2.29
2018 2547 7.189693 TCATTAGTCAGTAGCAAACAGTTTG 57.810 36.000 20.10 20.10 43.44 2.93
2019 2548 7.801716 TTCATTAGTCAGTAGCAAACAGTTT 57.198 32.000 0.00 0.00 0.00 2.66
2037 2572 8.122472 TCTATATGTCCGCTCAGATTTCATTA 57.878 34.615 0.00 0.00 0.00 1.90
2038 2573 6.997655 TCTATATGTCCGCTCAGATTTCATT 58.002 36.000 0.00 0.00 0.00 2.57
2052 2587 8.778358 GGTTCAAACTGATTCATCTATATGTCC 58.222 37.037 0.00 0.00 34.50 4.02
2078 2657 6.758886 GTGACTAAGTACCCTCAGATGAAATG 59.241 42.308 0.00 0.00 0.00 2.32
2085 2664 4.079970 CACTGTGACTAAGTACCCTCAGA 58.920 47.826 0.32 0.00 0.00 3.27
2101 2680 3.205338 TGTGGTTGAAGATGTCACTGTG 58.795 45.455 0.17 0.17 35.39 3.66
2153 2732 1.853114 CGAGGATGATGCATGCTGGC 61.853 60.000 20.33 8.58 42.36 4.85
2162 2745 2.541794 CCGTCAGTGTACGAGGATGATG 60.542 54.545 14.17 0.00 45.68 3.07
2192 2775 3.023119 TGTCTGCAGAAAACAATGGTGT 58.977 40.909 20.19 0.00 40.75 4.16
2248 2837 0.249868 CTCTTGCCGTGTTCACCTCA 60.250 55.000 0.00 0.00 0.00 3.86
2263 2852 2.574006 TCAGCACATCTTTGCCTCTT 57.426 45.000 0.00 0.00 44.14 2.85
2332 2921 6.270000 CCACAGAGGTTCAGGGATATGTATAA 59.730 42.308 0.00 0.00 0.00 0.98
2358 2951 2.504681 GGCGCAATGTGGCTTTCG 60.505 61.111 10.83 0.00 35.70 3.46
2404 3000 0.527565 GCGGCAACATTCAGGTGAAT 59.472 50.000 0.00 0.00 44.93 2.57
2454 3055 4.684134 TGCTCCTTGGCCTTGGCC 62.684 66.667 22.91 22.91 0.00 5.36
2557 3200 2.509569 TGCCCAAGCGAAGTGAAAATA 58.490 42.857 0.00 0.00 44.31 1.40
2570 3213 0.606604 AATGCTTCTGCTTGCCCAAG 59.393 50.000 3.70 3.70 41.24 3.61
2571 3214 0.604578 GAATGCTTCTGCTTGCCCAA 59.395 50.000 0.00 0.00 40.48 4.12
2572 3215 0.251474 AGAATGCTTCTGCTTGCCCA 60.251 50.000 0.00 0.00 38.91 5.36
2573 3216 2.576298 AGAATGCTTCTGCTTGCCC 58.424 52.632 0.00 0.00 38.91 5.36
2644 3287 0.673022 GGAACAGAGCCTGCAGTCAG 60.673 60.000 13.81 4.06 40.02 3.51
2645 3288 1.372683 GGAACAGAGCCTGCAGTCA 59.627 57.895 13.81 0.00 34.37 3.41
2646 3289 1.739562 CGGAACAGAGCCTGCAGTC 60.740 63.158 13.81 0.00 34.37 3.51
2656 3299 2.506217 GCGATCGTGCGGAACAGA 60.506 61.111 17.81 0.00 0.00 3.41
2710 3353 0.393537 CCACCATGTCCTCCTGCTTC 60.394 60.000 0.00 0.00 0.00 3.86
2847 3490 7.048629 TGGTCAAAATTACATTCTTGCTCAA 57.951 32.000 0.00 0.00 0.00 3.02
3012 3699 0.830648 TAGTAAGCAGCATTCCGCCT 59.169 50.000 0.00 0.00 44.04 5.52
3047 3734 8.537016 AGTAGCTCACACAATGTAAGGTAATTA 58.463 33.333 0.00 0.00 0.00 1.40
3049 3736 6.947464 AGTAGCTCACACAATGTAAGGTAAT 58.053 36.000 0.00 0.00 0.00 1.89
3054 3741 5.960113 AGAGAGTAGCTCACACAATGTAAG 58.040 41.667 0.00 0.00 46.45 2.34
3055 3742 5.105716 GGAGAGAGTAGCTCACACAATGTAA 60.106 44.000 0.00 0.00 46.45 2.41
3056 3743 4.399618 GGAGAGAGTAGCTCACACAATGTA 59.600 45.833 0.00 0.00 46.45 2.29
3057 3744 3.194542 GGAGAGAGTAGCTCACACAATGT 59.805 47.826 0.00 0.00 46.45 2.71
3058 3745 3.733380 CGGAGAGAGTAGCTCACACAATG 60.733 52.174 0.00 0.00 46.45 2.82
3059 3746 2.425312 CGGAGAGAGTAGCTCACACAAT 59.575 50.000 0.00 0.00 46.45 2.71
3060 3747 1.813178 CGGAGAGAGTAGCTCACACAA 59.187 52.381 0.00 0.00 46.45 3.33
3061 3748 1.271434 ACGGAGAGAGTAGCTCACACA 60.271 52.381 0.00 0.00 46.45 3.72
3062 3749 1.455248 ACGGAGAGAGTAGCTCACAC 58.545 55.000 0.00 0.00 46.45 3.82
3063 3750 2.201921 AACGGAGAGAGTAGCTCACA 57.798 50.000 0.00 0.00 46.45 3.58
3064 3751 3.533547 TCTAACGGAGAGAGTAGCTCAC 58.466 50.000 0.00 0.00 46.45 3.51
3065 3752 3.908643 TCTAACGGAGAGAGTAGCTCA 57.091 47.619 0.00 0.00 46.45 4.26
3066 3753 5.061179 AGAATCTAACGGAGAGAGTAGCTC 58.939 45.833 0.00 0.00 44.29 4.09
3067 3754 5.043737 AGAATCTAACGGAGAGAGTAGCT 57.956 43.478 0.00 0.00 37.70 3.32
3068 3755 5.993441 AGTAGAATCTAACGGAGAGAGTAGC 59.007 44.000 0.00 0.00 37.70 3.58
3069 3756 9.146984 CATAGTAGAATCTAACGGAGAGAGTAG 57.853 40.741 0.00 0.00 37.70 2.57
3070 3757 8.868103 TCATAGTAGAATCTAACGGAGAGAGTA 58.132 37.037 0.00 0.00 37.70 2.59
3071 3758 7.737869 TCATAGTAGAATCTAACGGAGAGAGT 58.262 38.462 0.00 0.00 37.70 3.24
3072 3759 8.610248 TTCATAGTAGAATCTAACGGAGAGAG 57.390 38.462 0.00 0.00 37.70 3.20
3073 3760 9.221933 GATTCATAGTAGAATCTAACGGAGAGA 57.778 37.037 8.91 0.00 46.53 3.10
3077 3764 7.228108 ACGTGATTCATAGTAGAATCTAACGGA 59.772 37.037 22.11 2.91 46.94 4.69
3078 3765 7.361127 ACGTGATTCATAGTAGAATCTAACGG 58.639 38.462 22.11 11.80 46.94 4.44
3085 3772 6.872628 TCCGTACGTGATTCATAGTAGAAT 57.127 37.500 15.21 0.00 40.75 2.40
3086 3773 6.261603 ACATCCGTACGTGATTCATAGTAGAA 59.738 38.462 15.21 0.00 0.00 2.10
3087 3774 5.761726 ACATCCGTACGTGATTCATAGTAGA 59.238 40.000 15.21 0.00 0.00 2.59
3088 3775 5.998553 ACATCCGTACGTGATTCATAGTAG 58.001 41.667 15.21 5.07 0.00 2.57
3089 3776 7.677454 ATACATCCGTACGTGATTCATAGTA 57.323 36.000 15.21 13.13 0.00 1.82
3090 3777 4.913335 ACATCCGTACGTGATTCATAGT 57.087 40.909 15.21 7.48 0.00 2.12
3091 3778 9.865484 CTATATACATCCGTACGTGATTCATAG 57.135 37.037 15.21 13.40 0.00 2.23
3092 3779 9.603921 TCTATATACATCCGTACGTGATTCATA 57.396 33.333 15.21 14.01 0.00 2.15
3093 3780 8.502105 TCTATATACATCCGTACGTGATTCAT 57.498 34.615 15.21 12.60 0.00 2.57
3094 3781 7.910441 TCTATATACATCCGTACGTGATTCA 57.090 36.000 15.21 6.93 0.00 2.57
3095 3782 7.376336 GCATCTATATACATCCGTACGTGATTC 59.624 40.741 15.21 0.00 0.00 2.52
3096 3783 7.148137 TGCATCTATATACATCCGTACGTGATT 60.148 37.037 15.21 9.57 0.00 2.57
3097 3784 6.317893 TGCATCTATATACATCCGTACGTGAT 59.682 38.462 15.21 13.24 0.00 3.06
3098 3785 5.644636 TGCATCTATATACATCCGTACGTGA 59.355 40.000 15.21 11.46 0.00 4.35
3099 3786 5.875930 TGCATCTATATACATCCGTACGTG 58.124 41.667 15.21 9.44 0.00 4.49
3100 3787 6.694877 ATGCATCTATATACATCCGTACGT 57.305 37.500 15.21 0.00 0.00 3.57
3101 3788 7.987268 AAATGCATCTATATACATCCGTACG 57.013 36.000 8.69 8.69 0.00 3.67
3104 3791 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
3140 3827 8.519526 GGGTGACTACATATGAAACAAAATGAA 58.480 33.333 10.38 0.00 0.00 2.57
3141 3828 7.888021 AGGGTGACTACATATGAAACAAAATGA 59.112 33.333 10.38 0.00 0.00 2.57
3142 3829 8.055279 AGGGTGACTACATATGAAACAAAATG 57.945 34.615 10.38 0.00 0.00 2.32
3143 3830 9.747898 TTAGGGTGACTACATATGAAACAAAAT 57.252 29.630 10.38 0.00 0.00 1.82
3144 3831 9.747898 ATTAGGGTGACTACATATGAAACAAAA 57.252 29.630 10.38 0.00 0.00 2.44
3145 3832 9.173021 CATTAGGGTGACTACATATGAAACAAA 57.827 33.333 10.38 0.00 0.00 2.83
3146 3833 7.773224 CCATTAGGGTGACTACATATGAAACAA 59.227 37.037 10.38 0.00 0.00 2.83
3147 3834 7.126573 TCCATTAGGGTGACTACATATGAAACA 59.873 37.037 10.38 1.47 38.11 2.83
3148 3835 7.506114 TCCATTAGGGTGACTACATATGAAAC 58.494 38.462 10.38 0.09 38.11 2.78
3149 3836 7.684317 TCCATTAGGGTGACTACATATGAAA 57.316 36.000 10.38 0.00 38.11 2.69
3150 3837 7.684317 TTCCATTAGGGTGACTACATATGAA 57.316 36.000 10.38 0.00 38.11 2.57
3151 3838 7.734865 AGATTCCATTAGGGTGACTACATATGA 59.265 37.037 10.38 0.00 38.11 2.15
3152 3839 7.911651 AGATTCCATTAGGGTGACTACATATG 58.088 38.462 0.00 0.00 38.11 1.78
3153 3840 7.958583 AGAGATTCCATTAGGGTGACTACATAT 59.041 37.037 0.00 0.00 38.11 1.78
3154 3841 7.306013 AGAGATTCCATTAGGGTGACTACATA 58.694 38.462 0.00 0.00 38.11 2.29
3155 3842 6.146760 AGAGATTCCATTAGGGTGACTACAT 58.853 40.000 0.00 0.00 38.11 2.29
3156 3843 5.529289 AGAGATTCCATTAGGGTGACTACA 58.471 41.667 0.00 0.00 38.11 2.74
3157 3844 7.784470 ATAGAGATTCCATTAGGGTGACTAC 57.216 40.000 0.00 0.00 38.11 2.73
3158 3845 9.892444 TTTATAGAGATTCCATTAGGGTGACTA 57.108 33.333 0.00 0.00 38.11 2.59
3159 3846 8.798975 TTTATAGAGATTCCATTAGGGTGACT 57.201 34.615 0.00 0.00 38.11 3.41
3160 3847 8.871125 TCTTTATAGAGATTCCATTAGGGTGAC 58.129 37.037 0.00 0.00 38.11 3.67
3161 3848 8.871125 GTCTTTATAGAGATTCCATTAGGGTGA 58.129 37.037 0.00 0.00 38.11 4.02
3162 3849 8.875168 AGTCTTTATAGAGATTCCATTAGGGTG 58.125 37.037 0.00 0.00 38.11 4.61
3163 3850 9.453830 AAGTCTTTATAGAGATTCCATTAGGGT 57.546 33.333 0.00 0.00 38.11 4.34
3181 3868 8.645110 CCCTCCGTTCCTAAATATAAGTCTTTA 58.355 37.037 0.00 0.00 0.00 1.85
3182 3869 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3183 3870 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3184 3871 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3185 3872 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3186 3873 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3187 3874 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3188 3875 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
3189 3876 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
3190 3877 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
3191 3878 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
3192 3879 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
3193 3880 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
3194 3881 3.053095 ACATCTACTCCCTCCGTTCCTAA 60.053 47.826 0.00 0.00 0.00 2.69
3195 3882 2.512896 ACATCTACTCCCTCCGTTCCTA 59.487 50.000 0.00 0.00 0.00 2.94
3196 3883 1.288335 ACATCTACTCCCTCCGTTCCT 59.712 52.381 0.00 0.00 0.00 3.36
3197 3884 1.682323 GACATCTACTCCCTCCGTTCC 59.318 57.143 0.00 0.00 0.00 3.62
3198 3885 2.376109 TGACATCTACTCCCTCCGTTC 58.624 52.381 0.00 0.00 0.00 3.95
3199 3886 2.526888 TGACATCTACTCCCTCCGTT 57.473 50.000 0.00 0.00 0.00 4.44
3200 3887 2.311463 CATGACATCTACTCCCTCCGT 58.689 52.381 0.00 0.00 0.00 4.69
3201 3888 2.311463 ACATGACATCTACTCCCTCCG 58.689 52.381 0.00 0.00 0.00 4.63
3202 3889 4.407296 AGAAACATGACATCTACTCCCTCC 59.593 45.833 0.00 0.00 0.00 4.30
3203 3890 5.355596 CAGAAACATGACATCTACTCCCTC 58.644 45.833 0.00 0.00 0.00 4.30
3204 3891 4.383552 GCAGAAACATGACATCTACTCCCT 60.384 45.833 0.00 0.00 0.00 4.20
3205 3892 3.873952 GCAGAAACATGACATCTACTCCC 59.126 47.826 0.00 0.00 0.00 4.30
3206 3893 3.873952 GGCAGAAACATGACATCTACTCC 59.126 47.826 0.00 0.00 0.00 3.85
3207 3894 4.764172 AGGCAGAAACATGACATCTACTC 58.236 43.478 0.00 0.00 0.00 2.59
3208 3895 4.833478 AGGCAGAAACATGACATCTACT 57.167 40.909 0.00 0.00 0.00 2.57
3209 3896 4.437930 GCAAGGCAGAAACATGACATCTAC 60.438 45.833 0.00 0.00 0.00 2.59
3210 3897 3.691118 GCAAGGCAGAAACATGACATCTA 59.309 43.478 0.00 0.00 0.00 1.98
3211 3898 2.490903 GCAAGGCAGAAACATGACATCT 59.509 45.455 0.00 0.00 0.00 2.90
3212 3899 2.229543 TGCAAGGCAGAAACATGACATC 59.770 45.455 0.00 0.00 33.32 3.06
3213 3900 2.241160 TGCAAGGCAGAAACATGACAT 58.759 42.857 0.00 0.00 33.32 3.06
3214 3901 1.689984 TGCAAGGCAGAAACATGACA 58.310 45.000 0.00 0.00 33.32 3.58
3215 3902 2.798976 TTGCAAGGCAGAAACATGAC 57.201 45.000 0.00 0.00 40.61 3.06
3216 3903 3.815856 TTTTGCAAGGCAGAAACATGA 57.184 38.095 0.00 0.00 40.61 3.07
3217 3904 4.512198 TGAATTTTGCAAGGCAGAAACATG 59.488 37.500 0.00 0.00 40.61 3.21
3218 3905 4.706035 TGAATTTTGCAAGGCAGAAACAT 58.294 34.783 0.00 0.00 40.61 2.71
3219 3906 4.121317 CTGAATTTTGCAAGGCAGAAACA 58.879 39.130 0.00 2.55 40.61 2.83
3220 3907 4.370917 TCTGAATTTTGCAAGGCAGAAAC 58.629 39.130 15.57 0.00 40.61 2.78
3221 3908 4.099881 ACTCTGAATTTTGCAAGGCAGAAA 59.900 37.500 17.38 3.51 40.61 2.52
3222 3909 3.638160 ACTCTGAATTTTGCAAGGCAGAA 59.362 39.130 17.38 4.12 40.61 3.02
3223 3910 3.005050 CACTCTGAATTTTGCAAGGCAGA 59.995 43.478 16.43 16.43 40.61 4.26
3224 3911 3.005050 TCACTCTGAATTTTGCAAGGCAG 59.995 43.478 0.00 6.43 40.61 4.85
3225 3912 2.957680 TCACTCTGAATTTTGCAAGGCA 59.042 40.909 0.00 0.00 36.47 4.75
3226 3913 3.648339 TCACTCTGAATTTTGCAAGGC 57.352 42.857 0.00 0.00 0.00 4.35
3271 3958 4.056050 GAGTCTTTTCTGCAAACCTACGA 58.944 43.478 0.00 0.00 0.00 3.43
3300 3987 5.461032 TCAGTATTTTCGGGCACAAATTT 57.539 34.783 0.00 0.00 0.00 1.82
3317 4004 8.046708 TGCAAAAGATTAGGCTAAGAATCAGTA 58.953 33.333 13.15 0.00 35.00 2.74
3344 4031 7.141100 GCTAAAGCCATCAACTAGTGTTTTA 57.859 36.000 0.00 0.00 32.26 1.52
3470 4158 4.452825 GAGCAGGGATAGGGTAGTTTTTC 58.547 47.826 0.00 0.00 0.00 2.29
3483 4171 1.383803 GAGGTGGAGGAGCAGGGAT 60.384 63.158 0.00 0.00 0.00 3.85
3736 4523 4.602259 ACGTCCTGTGCCACCACG 62.602 66.667 8.90 8.90 45.04 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.