Multiple sequence alignment - TraesCS4D01G304400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G304400 chr4D 100.000 6708 0 0 1 6708 472932029 472925322 0.000000e+00 12388.0
1 TraesCS4D01G304400 chr4D 82.865 1033 134 31 5269 6272 472880144 472879126 0.000000e+00 887.0
2 TraesCS4D01G304400 chr4D 97.328 262 6 1 6446 6706 400894868 400894607 1.720000e-120 444.0
3 TraesCS4D01G304400 chr4D 95.652 69 3 0 6377 6445 472481821 472481889 1.980000e-20 111.0
4 TraesCS4D01G304400 chr4B 94.189 4147 150 37 2007 6127 595274843 595270762 0.000000e+00 6239.0
5 TraesCS4D01G304400 chr4B 85.322 729 52 19 1328 2009 595275778 595275058 0.000000e+00 702.0
6 TraesCS4D01G304400 chr4B 92.070 454 19 7 866 1308 595276298 595275851 2.050000e-174 623.0
7 TraesCS4D01G304400 chr4B 91.640 311 16 2 4 314 595277139 595276839 8.040000e-114 422.0
8 TraesCS4D01G304400 chr4B 92.308 273 12 5 6182 6445 595270763 595270491 4.910000e-101 379.0
9 TraesCS4D01G304400 chr4B 79.747 158 25 6 6291 6445 594839338 594839491 2.560000e-19 108.0
10 TraesCS4D01G304400 chr4A 89.313 3827 224 80 552 4291 679979582 679975854 0.000000e+00 4630.0
11 TraesCS4D01G304400 chr4A 94.770 1415 59 7 4334 5743 679975741 679974337 0.000000e+00 2189.0
12 TraesCS4D01G304400 chr4A 91.884 690 39 12 5768 6445 679974345 679973661 0.000000e+00 948.0
13 TraesCS4D01G304400 chr4A 85.586 333 18 21 29 353 679980229 679979919 8.390000e-84 322.0
14 TraesCS4D01G304400 chr4A 80.973 226 22 8 563 779 626306348 626306135 6.960000e-35 159.0
15 TraesCS4D01G304400 chr4A 88.889 81 4 3 140 220 626307099 626307024 1.990000e-15 95.3
16 TraesCS4D01G304400 chr4A 91.667 48 4 0 5230 5277 679971662 679971615 4.340000e-07 67.6
17 TraesCS4D01G304400 chr2D 95.506 267 11 1 6441 6706 189689064 189689330 6.220000e-115 425.0
18 TraesCS4D01G304400 chr2D 86.111 108 12 3 408 514 351973455 351973350 5.500000e-21 113.0
19 TraesCS4D01G304400 chr5D 90.875 263 21 3 6446 6706 72364071 72364332 3.850000e-92 350.0
20 TraesCS4D01G304400 chr7D 89.493 276 12 2 6448 6706 552324313 552324038 3.880000e-87 333.0
21 TraesCS4D01G304400 chr7D 88.973 263 21 4 6446 6706 4171625 4171369 1.090000e-82 318.0
22 TraesCS4D01G304400 chr7D 95.652 69 3 0 6377 6445 78412387 78412455 1.980000e-20 111.0
23 TraesCS4D01G304400 chr3D 89.960 249 22 3 6460 6706 9132582 9132829 1.090000e-82 318.0
24 TraesCS4D01G304400 chr3D 87.900 281 15 11 6446 6708 55365506 55365785 5.050000e-81 313.0
25 TraesCS4D01G304400 chr3D 91.837 98 8 0 6609 6706 606927581 606927678 3.260000e-28 137.0
26 TraesCS4D01G304400 chr3D 87.037 108 14 0 407 514 190256592 190256485 9.140000e-24 122.0
27 TraesCS4D01G304400 chr7A 88.129 278 16 9 6446 6706 219167424 219167701 1.400000e-81 315.0
28 TraesCS4D01G304400 chr7A 86.628 172 21 2 1261 1432 705061504 705061673 8.880000e-44 189.0
29 TraesCS4D01G304400 chr6D 88.364 275 14 6 6446 6702 49803646 49803920 1.400000e-81 315.0
30 TraesCS4D01G304400 chr6D 89.011 91 8 2 425 514 302113733 302113644 1.980000e-20 111.0
31 TraesCS4D01G304400 chr6D 85.000 60 7 2 2088 2146 447045350 447045408 7.260000e-05 60.2
32 TraesCS4D01G304400 chr6A 83.871 217 32 3 1923 2138 560695619 560695405 3.170000e-48 204.0
33 TraesCS4D01G304400 chr5A 86.782 174 17 6 1261 1432 653053875 653054044 8.880000e-44 189.0
34 TraesCS4D01G304400 chr1B 85.827 127 15 3 389 514 301273378 301273502 1.520000e-26 132.0
35 TraesCS4D01G304400 chr5B 87.273 110 12 2 406 514 440275837 440275945 2.540000e-24 124.0
36 TraesCS4D01G304400 chr5B 86.792 106 12 2 413 517 501957055 501956951 4.250000e-22 117.0
37 TraesCS4D01G304400 chr3A 87.037 108 14 0 407 514 261350886 261350993 9.140000e-24 122.0
38 TraesCS4D01G304400 chr7B 86.792 106 14 0 409 514 216938228 216938333 1.180000e-22 119.0
39 TraesCS4D01G304400 chr7B 85.455 110 14 2 408 516 216938333 216938225 5.500000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G304400 chr4D 472925322 472932029 6707 True 12388.00 12388 100.0000 1 6708 1 chr4D.!!$R3 6707
1 TraesCS4D01G304400 chr4D 472879126 472880144 1018 True 887.00 887 82.8650 5269 6272 1 chr4D.!!$R2 1003
2 TraesCS4D01G304400 chr4B 595270491 595277139 6648 True 1673.00 6239 91.1058 4 6445 5 chr4B.!!$R1 6441
3 TraesCS4D01G304400 chr4A 679971615 679980229 8614 True 1631.32 4630 90.6440 29 6445 5 chr4A.!!$R2 6416


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 594 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59 F
677 857 0.522705 ATGCGTAGTACGTGCAGTCG 60.523 55.000 22.81 8.41 44.73 4.18 F
1516 1787 0.170116 CAGCCGTCTCACTCTCAGTC 59.830 60.000 0.00 0.00 0.00 3.51 F
2357 2919 0.445436 CACCTGAGCGCAATCTCAAC 59.555 55.000 11.47 0.00 41.99 3.18 F
3105 3674 1.064017 TGCAAACCTTTGACCTGGTCT 60.064 47.619 26.03 4.02 40.55 3.85 F
3193 3763 0.796312 ATGCGTTTTCGGTAGCACTG 59.204 50.000 0.00 0.00 42.73 3.66 F
3195 3765 1.226030 GCGTTTTCGGTAGCACTGGT 61.226 55.000 0.00 0.00 44.29 4.00 F
4711 5380 2.598439 GCTCATATTTGTGAAGAGCGCG 60.598 50.000 0.00 0.00 41.75 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1511 1782 0.609406 CGGGGTGTGAGAGAGACTGA 60.609 60.000 0.00 0.0 0.00 3.41 R
1819 2154 0.995024 CAAGAGGTTGATCCCCAGGT 59.005 55.000 1.75 0.0 35.46 4.00 R
3036 3605 1.228245 ACAACGGGATGCAAGCACT 60.228 52.632 0.00 0.0 0.00 4.40 R
3171 3740 1.727880 GTGCTACCGAAAACGCATACA 59.272 47.619 0.00 0.0 34.60 2.29 R
4835 5505 2.094762 AACATACCACGAAGAGCACC 57.905 50.000 0.00 0.0 0.00 5.01 R
5007 5677 2.345760 GGCCTGCATGTTGTGAGGG 61.346 63.158 0.00 0.0 0.00 4.30 R
5068 5738 2.777832 ACATTGAGAGGAACAGGCTC 57.222 50.000 0.00 0.0 0.00 4.70 R
6545 7308 0.250513 CGGGAGGTTGAAGAAGGAGG 59.749 60.000 0.00 0.0 0.00 4.30 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 0.389166 CTCAGGCCACGAGTCTGTTC 60.389 60.000 5.01 0.00 0.00 3.18
83 84 3.671716 TCTGTTCGTGCAGACTAGAGTA 58.328 45.455 0.00 0.00 40.23 2.59
84 85 3.685272 TCTGTTCGTGCAGACTAGAGTAG 59.315 47.826 0.00 0.00 40.23 2.57
85 86 3.671716 TGTTCGTGCAGACTAGAGTAGA 58.328 45.455 0.00 0.00 0.00 2.59
86 87 3.685272 TGTTCGTGCAGACTAGAGTAGAG 59.315 47.826 0.00 0.00 0.00 2.43
87 88 3.613494 TCGTGCAGACTAGAGTAGAGT 57.387 47.619 0.00 0.00 0.00 3.24
88 89 3.263261 TCGTGCAGACTAGAGTAGAGTG 58.737 50.000 0.00 0.00 0.00 3.51
89 90 2.353269 CGTGCAGACTAGAGTAGAGTGG 59.647 54.545 0.00 0.00 0.00 4.00
90 91 3.611970 GTGCAGACTAGAGTAGAGTGGA 58.388 50.000 0.00 0.00 0.00 4.02
91 92 4.011023 GTGCAGACTAGAGTAGAGTGGAA 58.989 47.826 0.00 0.00 0.00 3.53
92 93 4.459685 GTGCAGACTAGAGTAGAGTGGAAA 59.540 45.833 0.00 0.00 0.00 3.13
93 94 5.126384 GTGCAGACTAGAGTAGAGTGGAAAT 59.874 44.000 0.00 0.00 0.00 2.17
157 161 1.083401 CAGTGTTGCTGTCGCGAAC 60.083 57.895 12.06 5.49 40.27 3.95
161 165 1.132640 GTTGCTGTCGCGAACCATC 59.867 57.895 12.06 1.37 39.65 3.51
316 323 1.464734 CACAACTCCCGCTCTCTCTA 58.535 55.000 0.00 0.00 0.00 2.43
322 329 2.218603 CTCCCGCTCTCTCTAGTCTTC 58.781 57.143 0.00 0.00 0.00 2.87
365 373 1.483827 AGTGAGTGATGCGATGACCAT 59.516 47.619 0.00 0.00 0.00 3.55
366 374 1.596260 GTGAGTGATGCGATGACCATG 59.404 52.381 0.00 0.00 0.00 3.66
369 377 1.096967 GTGATGCGATGACCATGCCA 61.097 55.000 0.00 0.00 0.00 4.92
370 378 1.096967 TGATGCGATGACCATGCCAC 61.097 55.000 0.00 0.00 0.00 5.01
371 379 0.816825 GATGCGATGACCATGCCACT 60.817 55.000 0.00 0.00 0.00 4.00
372 380 0.816825 ATGCGATGACCATGCCACTC 60.817 55.000 0.00 0.00 0.00 3.51
373 381 2.528743 GCGATGACCATGCCACTCG 61.529 63.158 0.00 1.47 0.00 4.18
374 382 2.528743 CGATGACCATGCCACTCGC 61.529 63.158 0.00 0.00 38.31 5.03
376 384 1.153289 ATGACCATGCCACTCGCTC 60.153 57.895 0.00 0.00 38.78 5.03
377 385 2.512515 GACCATGCCACTCGCTCC 60.513 66.667 0.00 0.00 38.78 4.70
379 387 1.676678 GACCATGCCACTCGCTCCTA 61.677 60.000 0.00 0.00 38.78 2.94
380 388 1.068753 CCATGCCACTCGCTCCTAG 59.931 63.158 0.00 0.00 38.78 3.02
381 389 1.680522 CCATGCCACTCGCTCCTAGT 61.681 60.000 0.00 0.00 38.78 2.57
382 390 0.529337 CATGCCACTCGCTCCTAGTG 60.529 60.000 0.00 0.00 43.26 2.74
385 393 4.019983 CACTCGCTCCTAGTGGGT 57.980 61.111 0.00 0.00 40.69 4.51
394 402 1.672356 CCTAGTGGGTGCTGTGTGC 60.672 63.158 0.00 0.00 43.25 4.57
413 494 5.793457 GTGTGCGTTGATTTTTCATACTACC 59.207 40.000 0.00 0.00 0.00 3.18
416 497 6.092259 GTGCGTTGATTTTTCATACTACCTCT 59.908 38.462 0.00 0.00 0.00 3.69
420 501 7.545965 CGTTGATTTTTCATACTACCTCTGTCT 59.454 37.037 0.00 0.00 0.00 3.41
421 502 8.660373 GTTGATTTTTCATACTACCTCTGTCTG 58.340 37.037 0.00 0.00 0.00 3.51
428 509 9.871238 TTTCATACTACCTCTGTCTGAAATTAC 57.129 33.333 0.00 0.00 36.38 1.89
436 517 4.883083 TCTGTCTGAAATTACTTGTCGCT 58.117 39.130 0.00 0.00 0.00 4.93
438 519 4.627058 TGTCTGAAATTACTTGTCGCTCA 58.373 39.130 0.00 0.00 0.00 4.26
439 520 5.053811 TGTCTGAAATTACTTGTCGCTCAA 58.946 37.500 0.00 0.00 34.61 3.02
440 521 5.525745 TGTCTGAAATTACTTGTCGCTCAAA 59.474 36.000 0.00 0.00 35.48 2.69
441 522 5.846473 GTCTGAAATTACTTGTCGCTCAAAC 59.154 40.000 0.00 0.00 35.48 2.93
442 523 4.768145 TGAAATTACTTGTCGCTCAAACG 58.232 39.130 0.00 0.00 35.48 3.60
445 526 2.736144 TACTTGTCGCTCAAACGGAT 57.264 45.000 0.00 0.00 35.48 4.18
446 527 1.148310 ACTTGTCGCTCAAACGGATG 58.852 50.000 0.00 0.00 35.48 3.51
447 528 1.148310 CTTGTCGCTCAAACGGATGT 58.852 50.000 0.00 0.00 35.48 3.06
449 530 2.665649 TGTCGCTCAAACGGATGTAT 57.334 45.000 0.00 0.00 0.00 2.29
450 531 2.536365 TGTCGCTCAAACGGATGTATC 58.464 47.619 0.00 0.00 0.00 2.24
451 532 2.165641 TGTCGCTCAAACGGATGTATCT 59.834 45.455 0.00 0.00 0.00 1.98
452 533 3.379057 TGTCGCTCAAACGGATGTATCTA 59.621 43.478 0.00 0.00 0.00 1.98
455 536 3.975670 CGCTCAAACGGATGTATCTAGAC 59.024 47.826 0.00 0.00 0.00 2.59
456 537 4.261238 CGCTCAAACGGATGTATCTAGACT 60.261 45.833 0.00 0.00 0.00 3.24
458 539 6.512903 CGCTCAAACGGATGTATCTAGACTTA 60.513 42.308 0.00 0.00 0.00 2.24
459 540 7.371936 GCTCAAACGGATGTATCTAGACTTAT 58.628 38.462 0.00 0.00 0.00 1.73
467 548 8.651588 CGGATGTATCTAGACTTATTTTCATGC 58.348 37.037 0.00 0.00 0.00 4.06
487 568 7.584108 TCATGCTAAATACATCCATTTAAGCG 58.416 34.615 0.00 0.00 32.80 4.68
488 569 7.443879 TCATGCTAAATACATCCATTTAAGCGA 59.556 33.333 0.00 0.00 32.80 4.93
494 575 8.445275 AAATACATCCATTTAAGCGACATGTA 57.555 30.769 0.00 0.00 31.61 2.29
497 578 7.333528 ACATCCATTTAAGCGACATGTAATT 57.666 32.000 0.00 0.00 0.00 1.40
499 580 6.371809 TCCATTTAAGCGACATGTAATTCC 57.628 37.500 0.00 0.00 0.00 3.01
500 581 5.007234 TCCATTTAAGCGACATGTAATTCCG 59.993 40.000 0.00 0.00 0.00 4.30
501 582 4.868450 TTTAAGCGACATGTAATTCCGG 57.132 40.909 0.00 0.00 0.00 5.14
502 583 2.684001 AAGCGACATGTAATTCCGGA 57.316 45.000 0.00 0.00 0.00 5.14
503 584 1.935933 AGCGACATGTAATTCCGGAC 58.064 50.000 1.83 0.00 0.00 4.79
504 585 0.575390 GCGACATGTAATTCCGGACG 59.425 55.000 1.83 1.53 0.00 4.79
505 586 1.205657 CGACATGTAATTCCGGACGG 58.794 55.000 1.83 3.96 0.00 4.79
506 587 1.202325 CGACATGTAATTCCGGACGGA 60.202 52.381 1.83 9.76 43.52 4.69
507 588 2.470821 GACATGTAATTCCGGACGGAG 58.529 52.381 13.64 3.15 46.06 4.63
508 589 1.138266 ACATGTAATTCCGGACGGAGG 59.862 52.381 13.64 0.00 46.06 4.30
509 590 0.756903 ATGTAATTCCGGACGGAGGG 59.243 55.000 13.64 0.00 46.06 4.30
510 591 0.324552 TGTAATTCCGGACGGAGGGA 60.325 55.000 13.64 0.00 46.06 4.20
511 592 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
513 594 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
514 595 0.032813 ATTCCGGACGGAGGGAGTAA 60.033 55.000 13.64 0.00 46.06 2.24
515 596 0.032813 TTCCGGACGGAGGGAGTAAT 60.033 55.000 13.64 0.00 46.06 1.89
516 597 0.846015 TCCGGACGGAGGGAGTAATA 59.154 55.000 9.76 0.00 39.76 0.98
517 598 0.957362 CCGGACGGAGGGAGTAATAC 59.043 60.000 4.40 0.00 37.50 1.89
518 599 1.478288 CCGGACGGAGGGAGTAATACT 60.478 57.143 4.40 0.00 37.50 2.12
537 618 9.863845 GTAATACTCCCTCTGAAATATAAGAGC 57.136 37.037 5.02 0.00 38.91 4.09
538 619 5.461032 ACTCCCTCTGAAATATAAGAGCG 57.539 43.478 5.02 0.00 38.91 5.03
539 620 4.896482 ACTCCCTCTGAAATATAAGAGCGT 59.104 41.667 5.02 1.05 38.91 5.07
540 621 5.364157 ACTCCCTCTGAAATATAAGAGCGTT 59.636 40.000 5.02 0.00 38.91 4.84
544 625 7.287005 TCCCTCTGAAATATAAGAGCGTTTAGA 59.713 37.037 5.02 0.00 38.91 2.10
548 724 9.871238 TCTGAAATATAAGAGCGTTTAGAACTT 57.129 29.630 0.00 0.00 0.00 2.66
555 731 8.828688 ATAAGAGCGTTTAGAACTTTAACTGT 57.171 30.769 0.00 0.00 0.00 3.55
562 738 7.570691 GCGTTTAGAACTTTAACTGTAGCATGT 60.571 37.037 0.00 0.00 0.00 3.21
567 743 7.161404 AGAACTTTAACTGTAGCATGTCATCA 58.839 34.615 0.00 0.00 0.00 3.07
579 757 1.114627 TGTCATCATGAGAGACCCCG 58.885 55.000 21.60 0.00 0.00 5.73
668 848 4.273480 AGCCAAATCAATCATGCGTAGTAC 59.727 41.667 0.00 0.00 0.00 2.73
669 849 4.761745 CCAAATCAATCATGCGTAGTACG 58.238 43.478 18.37 18.37 45.88 3.67
670 850 4.270084 CCAAATCAATCATGCGTAGTACGT 59.730 41.667 22.81 2.17 44.73 3.57
671 851 5.190342 CAAATCAATCATGCGTAGTACGTG 58.810 41.667 22.81 14.56 44.73 4.49
672 852 2.190161 TCAATCATGCGTAGTACGTGC 58.810 47.619 22.81 8.72 44.73 5.34
673 853 1.923864 CAATCATGCGTAGTACGTGCA 59.076 47.619 22.81 14.01 44.73 4.57
675 855 0.524414 TCATGCGTAGTACGTGCAGT 59.476 50.000 22.81 3.54 44.73 4.40
676 856 0.914551 CATGCGTAGTACGTGCAGTC 59.085 55.000 22.81 6.67 44.73 3.51
677 857 0.522705 ATGCGTAGTACGTGCAGTCG 60.523 55.000 22.81 8.41 44.73 4.18
697 877 1.616994 GGCCTTAAACCAGTGATGGCT 60.617 52.381 0.00 0.00 38.93 4.75
704 884 3.200593 CAGTGATGGCTGGAGCGC 61.201 66.667 0.00 0.00 43.26 5.92
731 916 2.752358 CCTGGCTTGTCCTGCAGA 59.248 61.111 17.39 0.00 35.26 4.26
847 1040 4.278956 CCGCAGCTTCGGTTAAGT 57.721 55.556 17.25 0.00 44.18 2.24
878 1071 1.300233 GCGCGACTATTCCTCCCTG 60.300 63.158 12.10 0.00 0.00 4.45
1060 1275 3.839432 CGGAGAAGACCCCGCCTC 61.839 72.222 0.00 0.00 39.22 4.70
1339 1610 1.152989 TTGTGTCGTAACCCGTGTGC 61.153 55.000 0.00 0.00 37.94 4.57
1508 1779 0.868406 CAAAAGGTCAGCCGTCTCAC 59.132 55.000 0.00 0.00 40.50 3.51
1509 1780 0.759346 AAAAGGTCAGCCGTCTCACT 59.241 50.000 0.00 0.00 40.50 3.41
1510 1781 0.318762 AAAGGTCAGCCGTCTCACTC 59.681 55.000 0.00 0.00 40.50 3.51
1511 1782 0.540830 AAGGTCAGCCGTCTCACTCT 60.541 55.000 0.00 0.00 40.50 3.24
1512 1783 0.963355 AGGTCAGCCGTCTCACTCTC 60.963 60.000 0.00 0.00 40.50 3.20
1513 1784 1.244697 GGTCAGCCGTCTCACTCTCA 61.245 60.000 0.00 0.00 0.00 3.27
1516 1787 0.170116 CAGCCGTCTCACTCTCAGTC 59.830 60.000 0.00 0.00 0.00 3.51
1532 1803 2.680352 TCTCTCTCACACCCCGCC 60.680 66.667 0.00 0.00 0.00 6.13
1536 1807 3.934391 CTCTCACACCCCGCCGTTC 62.934 68.421 0.00 0.00 0.00 3.95
1550 1821 3.795101 CCGCCGTTCAAGTAATACTACTG 59.205 47.826 0.00 0.00 38.43 2.74
1551 1822 3.795101 CGCCGTTCAAGTAATACTACTGG 59.205 47.826 0.00 0.00 38.43 4.00
1600 1919 2.983879 AAGGGAAGATGGTGGGCGG 61.984 63.158 0.00 0.00 0.00 6.13
1628 1947 7.342799 TCCTTGATTTGAGCTAATAATTGCCTT 59.657 33.333 0.00 0.00 0.00 4.35
1630 1949 7.643569 TGATTTGAGCTAATAATTGCCTTCA 57.356 32.000 0.00 0.00 0.00 3.02
1653 1972 0.584396 TTGCGGAGTTGCGTGTAAAG 59.416 50.000 0.00 0.00 37.81 1.85
1668 1988 3.621268 GTGTAAAGACAGTGTGTGAGCAA 59.379 43.478 0.00 0.00 35.82 3.91
1684 2004 4.276926 GTGAGCAAACTCTTGAAGGACAAT 59.723 41.667 0.00 0.00 43.85 2.71
1685 2005 4.889409 TGAGCAAACTCTTGAAGGACAATT 59.111 37.500 0.00 0.00 43.85 2.32
1697 2017 2.787994 AGGACAATTGGAAGAGCAGTG 58.212 47.619 10.83 0.00 0.00 3.66
1699 2022 2.485814 GGACAATTGGAAGAGCAGTGTC 59.514 50.000 10.83 0.00 34.52 3.67
1745 2068 4.836125 TTTCAAGGAGATGTGCTTTGAC 57.164 40.909 0.00 0.00 30.60 3.18
1819 2154 6.916360 AAGATTGCTTATTTTTGGTCAGGA 57.084 33.333 0.00 0.00 31.07 3.86
1842 2177 1.034292 GGGGATCAACCTCTTGCAGC 61.034 60.000 0.00 0.00 35.94 5.25
1875 2210 3.979948 TGCTGTGTGGAAATCATGTTTG 58.020 40.909 0.00 0.00 0.00 2.93
2035 2594 8.783093 TCACTGAAAACTTCATTCAAATACGAT 58.217 29.630 0.00 0.00 39.30 3.73
2041 2600 9.927668 AAAACTTCATTCAAATACGATTCCAAT 57.072 25.926 0.00 0.00 0.00 3.16
2081 2640 7.736880 CGACATGTCACTTTTATTTTGCAAATG 59.263 33.333 24.93 6.53 0.00 2.32
2161 2720 7.308469 CGGAGGTAGTATTAGATTGGTACTGAC 60.308 44.444 0.00 0.00 31.58 3.51
2183 2742 3.430651 CCAGTGACCAACATTTTGCAACT 60.431 43.478 0.00 0.00 0.00 3.16
2184 2743 3.798337 CAGTGACCAACATTTTGCAACTC 59.202 43.478 0.00 0.00 0.00 3.01
2185 2744 3.701040 AGTGACCAACATTTTGCAACTCT 59.299 39.130 0.00 0.00 0.00 3.24
2186 2745 4.887071 AGTGACCAACATTTTGCAACTCTA 59.113 37.500 0.00 0.00 0.00 2.43
2187 2746 5.009010 AGTGACCAACATTTTGCAACTCTAG 59.991 40.000 0.00 0.00 0.00 2.43
2259 2820 2.154462 CTTGGACTTCCATTGACGCTT 58.846 47.619 0.00 0.00 46.97 4.68
2260 2821 1.808411 TGGACTTCCATTGACGCTTC 58.192 50.000 0.00 0.00 42.01 3.86
2357 2919 0.445436 CACCTGAGCGCAATCTCAAC 59.555 55.000 11.47 0.00 41.99 3.18
2424 2986 6.683715 TGATTACGATGAATCAATACGCCTA 58.316 36.000 8.87 0.00 41.70 3.93
2425 2987 6.806739 TGATTACGATGAATCAATACGCCTAG 59.193 38.462 8.87 0.00 41.70 3.02
2532 3094 3.307480 CGAAACTTCCCTTGGGATACTGT 60.307 47.826 9.48 4.15 0.00 3.55
2677 3245 2.226437 CAGGTTTCTACACACATGCCAC 59.774 50.000 0.00 0.00 0.00 5.01
2686 3254 1.285641 CACATGCCACGAAACCACC 59.714 57.895 0.00 0.00 0.00 4.61
2692 3260 1.512156 GCCACGAAACCACCGAATGT 61.512 55.000 0.00 0.00 0.00 2.71
2697 3265 2.298163 ACGAAACCACCGAATGTACTCT 59.702 45.455 0.00 0.00 0.00 3.24
2758 3327 3.427098 GCGTTACAAAGTTATGAAGGGGC 60.427 47.826 0.00 0.00 0.00 5.80
2781 3350 1.335142 GGTCGCCACAAAACGCATTAA 60.335 47.619 0.00 0.00 0.00 1.40
2782 3351 1.976045 GTCGCCACAAAACGCATTAAG 59.024 47.619 0.00 0.00 0.00 1.85
2821 3390 7.645340 GGTTATATCACAGAATGCATGTTGTTC 59.355 37.037 12.28 1.65 42.53 3.18
2827 3396 4.581824 ACAGAATGCATGTTGTTCTCTGTT 59.418 37.500 18.00 6.77 42.53 3.16
2828 3397 5.152097 CAGAATGCATGTTGTTCTCTGTTC 58.848 41.667 12.24 0.00 30.19 3.18
2829 3398 4.217118 AGAATGCATGTTGTTCTCTGTTCC 59.783 41.667 0.00 0.00 0.00 3.62
2830 3399 2.929641 TGCATGTTGTTCTCTGTTCCA 58.070 42.857 0.00 0.00 0.00 3.53
2831 3400 3.489355 TGCATGTTGTTCTCTGTTCCAT 58.511 40.909 0.00 0.00 0.00 3.41
2832 3401 3.890756 TGCATGTTGTTCTCTGTTCCATT 59.109 39.130 0.00 0.00 0.00 3.16
2833 3402 4.232221 GCATGTTGTTCTCTGTTCCATTG 58.768 43.478 0.00 0.00 0.00 2.82
2834 3403 4.261741 GCATGTTGTTCTCTGTTCCATTGT 60.262 41.667 0.00 0.00 0.00 2.71
2835 3404 5.048782 GCATGTTGTTCTCTGTTCCATTGTA 60.049 40.000 0.00 0.00 0.00 2.41
2836 3405 6.349611 GCATGTTGTTCTCTGTTCCATTGTAT 60.350 38.462 0.00 0.00 0.00 2.29
2837 3406 6.801539 TGTTGTTCTCTGTTCCATTGTATC 57.198 37.500 0.00 0.00 0.00 2.24
2861 3430 6.611236 TCTCCATTGTATCTTCCACACTATCA 59.389 38.462 0.00 0.00 0.00 2.15
2868 3437 8.722480 TGTATCTTCCACACTATCATTCTTTG 57.278 34.615 0.00 0.00 0.00 2.77
3105 3674 1.064017 TGCAAACCTTTGACCTGGTCT 60.064 47.619 26.03 4.02 40.55 3.85
3186 3755 4.023536 ACAGAATTTGTATGCGTTTTCGGT 60.024 37.500 0.00 0.00 40.18 4.69
3187 3756 5.179742 ACAGAATTTGTATGCGTTTTCGGTA 59.820 36.000 0.00 0.00 40.18 4.02
3193 3763 0.796312 ATGCGTTTTCGGTAGCACTG 59.204 50.000 0.00 0.00 42.73 3.66
3195 3765 1.226030 GCGTTTTCGGTAGCACTGGT 61.226 55.000 0.00 0.00 44.29 4.00
3460 4033 4.328169 GGCATTACAAAGTAGTACGGACAC 59.672 45.833 0.00 0.00 0.00 3.67
3464 4037 4.677673 ACAAAGTAGTACGGACACCTTT 57.322 40.909 0.00 4.64 31.58 3.11
3543 4116 7.589954 ACTTTGTTAACAAAAATAGCAGCTACG 59.410 33.333 28.52 16.94 44.24 3.51
3580 4153 6.150976 ACAGTTGTGTCATTCTTCAGTGAAAA 59.849 34.615 7.06 5.17 26.76 2.29
3714 4287 7.827819 ATTCAATTCAAATGAGCAGACAATG 57.172 32.000 0.00 0.00 0.00 2.82
3732 4305 6.925165 AGACAATGTTTTGATGTTAGGCAAAG 59.075 34.615 0.00 0.00 35.64 2.77
3735 4308 5.606348 TGTTTTGATGTTAGGCAAAGGTT 57.394 34.783 0.00 0.00 35.64 3.50
3736 4309 5.355596 TGTTTTGATGTTAGGCAAAGGTTG 58.644 37.500 0.00 0.00 35.64 3.77
3857 4430 3.475566 TCATAGAGTGCATTACTGGGC 57.524 47.619 0.00 0.00 40.53 5.36
3869 4442 4.702131 GCATTACTGGGCCTGGAATATAAG 59.298 45.833 19.31 9.32 0.00 1.73
3903 4476 7.629157 TGTGATACATTTGTAGATTCAAGGGA 58.371 34.615 0.00 0.00 33.52 4.20
4159 4732 6.202331 TGGTGGAAAGGATCAGTCTATTCTA 58.798 40.000 0.00 0.00 0.00 2.10
4166 4739 4.591072 AGGATCAGTCTATTCTACAAGGCC 59.409 45.833 0.00 0.00 0.00 5.19
4669 5338 7.387673 TGATGAAAAGGTACACAACTGTATCAG 59.612 37.037 0.00 0.00 36.55 2.90
4711 5380 2.598439 GCTCATATTTGTGAAGAGCGCG 60.598 50.000 0.00 0.00 41.75 6.86
4980 5650 5.780282 AGCATAGCTGGATACACCTAACATA 59.220 40.000 0.00 0.00 46.17 2.29
5007 5677 4.228912 ACAACATTAAGTGTGCTGAAGC 57.771 40.909 0.00 0.00 41.14 3.86
5068 5738 4.109050 GTCTTCTAGGAACAGCAAGATCG 58.891 47.826 0.00 0.00 0.00 3.69
5107 5777 2.011741 ATTGCGCATCTGCATGGTGG 62.012 55.000 12.75 0.00 45.78 4.61
5176 5846 1.228124 CGCCAACCTCCCTTGTTGA 60.228 57.895 4.79 0.00 44.57 3.18
5208 5878 9.350357 CAATTCATGGTGTTTCTTTCTCTATTG 57.650 33.333 0.00 0.00 0.00 1.90
5257 5927 1.068472 ACCTTCGAGAAGTGCAGTACG 60.068 52.381 11.38 1.88 36.72 3.67
5303 5973 2.102588 AGTGAAGACGCACAGTTTACCT 59.897 45.455 0.00 0.00 41.19 3.08
5325 6000 4.913126 GACCAAGCGTAGTCCAGG 57.087 61.111 0.00 0.00 0.00 4.45
5548 6280 1.233285 GCATGGCCACCTCGATCATC 61.233 60.000 8.16 0.00 0.00 2.92
5626 6358 1.298340 CTGGGTATTCGGTGTGCCA 59.702 57.895 0.00 0.00 34.09 4.92
5769 6504 2.834638 ATTCCTCTCCAATGGGGTTG 57.165 50.000 0.00 0.00 38.11 3.77
5770 6505 1.455822 TTCCTCTCCAATGGGGTTGT 58.544 50.000 0.00 0.00 36.01 3.32
5771 6506 0.698238 TCCTCTCCAATGGGGTTGTG 59.302 55.000 0.00 0.00 36.01 3.33
5772 6507 0.698238 CCTCTCCAATGGGGTTGTGA 59.302 55.000 0.00 0.00 36.01 3.58
5809 6544 6.239176 GCAAGAGTAGATAGGCACATTAGACT 60.239 42.308 0.00 0.00 0.00 3.24
5827 6562 5.546621 AGACTGGTTCTTGTAGCTTACAA 57.453 39.130 0.00 0.00 45.66 2.41
5928 6665 5.651387 TTGATTTATCGGAAACCAATGCA 57.349 34.783 0.00 0.00 0.00 3.96
5940 6677 1.843368 CCAATGCACTGGTTCAGGAT 58.157 50.000 5.89 0.00 35.51 3.24
6008 6746 0.329261 TGCCTGAGAATGGAACCCTG 59.671 55.000 0.00 0.00 0.00 4.45
6009 6747 0.394899 GCCTGAGAATGGAACCCTGG 60.395 60.000 0.00 0.00 0.00 4.45
6053 6791 2.736721 TCGCATTGTAACTTCTGACTGC 59.263 45.455 0.00 0.00 0.00 4.40
6092 6838 7.730364 TTCAGTCTAGTTCAGTTCAATTTCC 57.270 36.000 0.00 0.00 0.00 3.13
6100 6846 6.974965 AGTTCAGTTCAATTTCCTGTGAATC 58.025 36.000 0.00 0.00 36.23 2.52
6130 6877 3.066760 CACACTCCCCAAGTTCTGAAAAC 59.933 47.826 0.00 0.00 35.45 2.43
6251 7003 1.695242 TGAGGTTCAGCGGGTTAAAGA 59.305 47.619 0.00 0.00 0.00 2.52
6296 7051 6.467723 TTTTTCTATGAGCGTCAGAAGTTC 57.532 37.500 0.00 0.00 30.43 3.01
6297 7052 3.406728 TCTATGAGCGTCAGAAGTTCG 57.593 47.619 0.00 0.00 0.00 3.95
6298 7053 2.097629 TCTATGAGCGTCAGAAGTTCGG 59.902 50.000 0.00 0.00 0.00 4.30
6341 7104 6.393171 CCAGGAAGAAGAAATTTCACAATCC 58.607 40.000 19.99 18.88 0.00 3.01
6344 7107 8.146412 CAGGAAGAAGAAATTTCACAATCCTTT 58.854 33.333 22.58 8.25 31.45 3.11
6346 7109 9.330063 GGAAGAAGAAATTTCACAATCCTTTTT 57.670 29.630 19.99 5.46 0.00 1.94
6445 7208 4.621034 GGCACACCAATCTGAAATTTTACG 59.379 41.667 0.00 0.00 35.26 3.18
6446 7209 4.621034 GCACACCAATCTGAAATTTTACGG 59.379 41.667 0.00 0.00 0.00 4.02
6448 7211 4.173256 CACCAATCTGAAATTTTACGGGC 58.827 43.478 0.00 0.00 0.00 6.13
6449 7212 3.829601 ACCAATCTGAAATTTTACGGGCA 59.170 39.130 0.00 0.00 0.00 5.36
6450 7213 4.082245 ACCAATCTGAAATTTTACGGGCAG 60.082 41.667 0.00 0.00 0.00 4.85
6451 7214 4.082245 CCAATCTGAAATTTTACGGGCAGT 60.082 41.667 0.00 0.00 0.00 4.40
6452 7215 4.701956 ATCTGAAATTTTACGGGCAGTG 57.298 40.909 0.00 0.00 0.00 3.66
6454 7217 4.331968 TCTGAAATTTTACGGGCAGTGAT 58.668 39.130 0.00 0.00 0.00 3.06
6457 7220 4.155826 TGAAATTTTACGGGCAGTGATCTG 59.844 41.667 0.00 0.00 43.87 2.90
6495 7258 3.299977 GGTTGGGCCGGTCAAACC 61.300 66.667 29.20 29.20 34.05 3.27
6496 7259 3.299977 GTTGGGCCGGTCAAACCC 61.300 66.667 15.93 11.24 44.52 4.11
6497 7260 4.607025 TTGGGCCGGTCAAACCCC 62.607 66.667 9.07 7.06 43.54 4.95
6503 7266 4.636435 CGGTCAAACCCCAGCCGT 62.636 66.667 0.00 0.00 37.87 5.68
6504 7267 2.671963 GGTCAAACCCCAGCCGTC 60.672 66.667 0.00 0.00 30.04 4.79
6506 7269 1.966451 GTCAAACCCCAGCCGTCAG 60.966 63.158 0.00 0.00 0.00 3.51
6507 7270 2.144078 TCAAACCCCAGCCGTCAGA 61.144 57.895 0.00 0.00 0.00 3.27
6509 7272 1.026718 CAAACCCCAGCCGTCAGATC 61.027 60.000 0.00 0.00 0.00 2.75
6512 7275 2.503061 CCCAGCCGTCAGATCTGG 59.497 66.667 22.42 8.05 45.24 3.86
6513 7276 2.362369 CCCAGCCGTCAGATCTGGT 61.362 63.158 22.42 0.00 44.41 4.00
6515 7278 0.460987 CCAGCCGTCAGATCTGGTTC 60.461 60.000 22.42 12.04 41.76 3.62
6517 7280 1.153349 GCCGTCAGATCTGGTTCCC 60.153 63.158 22.42 4.48 0.00 3.97
6518 7281 1.617947 GCCGTCAGATCTGGTTCCCT 61.618 60.000 22.42 0.00 0.00 4.20
6519 7282 0.176680 CCGTCAGATCTGGTTCCCTG 59.823 60.000 22.42 5.09 0.00 4.45
6520 7283 0.460987 CGTCAGATCTGGTTCCCTGC 60.461 60.000 22.42 2.94 0.00 4.85
6521 7284 0.615331 GTCAGATCTGGTTCCCTGCA 59.385 55.000 22.42 0.00 0.00 4.41
6522 7285 0.615331 TCAGATCTGGTTCCCTGCAC 59.385 55.000 22.42 0.00 0.00 4.57
6524 7287 1.450312 GATCTGGTTCCCTGCACCG 60.450 63.158 0.00 0.00 37.07 4.94
6525 7288 2.185310 GATCTGGTTCCCTGCACCGT 62.185 60.000 0.00 0.00 37.07 4.83
6526 7289 2.185310 ATCTGGTTCCCTGCACCGTC 62.185 60.000 0.00 0.00 37.07 4.79
6528 7291 2.358737 GGTTCCCTGCACCGTCAG 60.359 66.667 0.00 0.00 0.00 3.51
6529 7292 2.741092 GTTCCCTGCACCGTCAGA 59.259 61.111 0.00 0.00 36.19 3.27
6531 7294 0.741221 GTTCCCTGCACCGTCAGATC 60.741 60.000 0.00 0.00 36.19 2.75
6532 7295 1.899437 TTCCCTGCACCGTCAGATCC 61.899 60.000 0.00 0.00 36.19 3.36
6533 7296 2.187946 CCTGCACCGTCAGATCCC 59.812 66.667 0.00 0.00 36.19 3.85
6534 7297 2.362369 CCTGCACCGTCAGATCCCT 61.362 63.158 0.00 0.00 36.19 4.20
6535 7298 1.599047 CTGCACCGTCAGATCCCTT 59.401 57.895 0.00 0.00 36.19 3.95
6536 7299 0.460987 CTGCACCGTCAGATCCCTTC 60.461 60.000 0.00 0.00 36.19 3.46
6537 7300 1.153349 GCACCGTCAGATCCCTTCC 60.153 63.158 0.00 0.00 0.00 3.46
6538 7301 1.522569 CACCGTCAGATCCCTTCCC 59.477 63.158 0.00 0.00 0.00 3.97
6540 7303 2.444256 CCGTCAGATCCCTTCCCCC 61.444 68.421 0.00 0.00 0.00 5.40
6555 7318 2.302019 CCCCCTCACCTCCTTCTTC 58.698 63.158 0.00 0.00 0.00 2.87
6556 7319 0.547712 CCCCCTCACCTCCTTCTTCA 60.548 60.000 0.00 0.00 0.00 3.02
6558 7321 1.003696 CCCCTCACCTCCTTCTTCAAC 59.996 57.143 0.00 0.00 0.00 3.18
6559 7322 1.003696 CCCTCACCTCCTTCTTCAACC 59.996 57.143 0.00 0.00 0.00 3.77
6561 7324 2.027653 CCTCACCTCCTTCTTCAACCTC 60.028 54.545 0.00 0.00 0.00 3.85
6562 7325 1.978580 TCACCTCCTTCTTCAACCTCC 59.021 52.381 0.00 0.00 0.00 4.30
6563 7326 1.003696 CACCTCCTTCTTCAACCTCCC 59.996 57.143 0.00 0.00 0.00 4.30
6564 7327 0.250513 CCTCCTTCTTCAACCTCCCG 59.749 60.000 0.00 0.00 0.00 5.14
6566 7329 1.125093 TCCTTCTTCAACCTCCCGCA 61.125 55.000 0.00 0.00 0.00 5.69
6567 7330 0.955919 CCTTCTTCAACCTCCCGCAC 60.956 60.000 0.00 0.00 0.00 5.34
6568 7331 1.291877 CTTCTTCAACCTCCCGCACG 61.292 60.000 0.00 0.00 0.00 5.34
6569 7332 2.725203 TTCTTCAACCTCCCGCACGG 62.725 60.000 1.02 1.02 0.00 4.94
6639 7402 3.775654 CTCGCCCCACCTCCTCAC 61.776 72.222 0.00 0.00 0.00 3.51
6691 7454 2.682494 GTCGCCCACCCTCACCTA 60.682 66.667 0.00 0.00 0.00 3.08
6692 7455 2.064581 GTCGCCCACCCTCACCTAT 61.065 63.158 0.00 0.00 0.00 2.57
6693 7456 2.063979 TCGCCCACCCTCACCTATG 61.064 63.158 0.00 0.00 0.00 2.23
6694 7457 2.367202 CGCCCACCCTCACCTATGT 61.367 63.158 0.00 0.00 0.00 2.29
6695 7458 1.527370 GCCCACCCTCACCTATGTC 59.473 63.158 0.00 0.00 0.00 3.06
6696 7459 1.823295 CCCACCCTCACCTATGTCG 59.177 63.158 0.00 0.00 0.00 4.35
6698 7461 0.460311 CCACCCTCACCTATGTCGTC 59.540 60.000 0.00 0.00 0.00 4.20
6701 7464 2.100989 ACCCTCACCTATGTCGTCTTC 58.899 52.381 0.00 0.00 0.00 2.87
6702 7465 1.065701 CCCTCACCTATGTCGTCTTCG 59.934 57.143 0.00 0.00 38.55 3.79
6703 7466 1.743958 CCTCACCTATGTCGTCTTCGT 59.256 52.381 0.00 0.00 38.33 3.85
6706 7469 2.555325 TCACCTATGTCGTCTTCGTGTT 59.445 45.455 0.00 0.00 38.33 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.129437 GCGTCAAAATGCTCTGGAGAC 59.871 52.381 1.35 0.00 34.40 3.36
1 2 1.442769 GCGTCAAAATGCTCTGGAGA 58.557 50.000 1.35 0.00 34.40 3.71
68 69 2.353269 CCACTCTACTCTAGTCTGCACG 59.647 54.545 0.00 0.00 0.00 5.34
83 84 4.697352 CCATTCTCGTTTCATTTCCACTCT 59.303 41.667 0.00 0.00 0.00 3.24
84 85 4.455877 ACCATTCTCGTTTCATTTCCACTC 59.544 41.667 0.00 0.00 0.00 3.51
85 86 4.398319 ACCATTCTCGTTTCATTTCCACT 58.602 39.130 0.00 0.00 0.00 4.00
86 87 4.455877 AGACCATTCTCGTTTCATTTCCAC 59.544 41.667 0.00 0.00 0.00 4.02
87 88 4.455533 CAGACCATTCTCGTTTCATTTCCA 59.544 41.667 0.00 0.00 0.00 3.53
88 89 4.695455 TCAGACCATTCTCGTTTCATTTCC 59.305 41.667 0.00 0.00 0.00 3.13
89 90 5.409826 ACTCAGACCATTCTCGTTTCATTTC 59.590 40.000 0.00 0.00 0.00 2.17
90 91 5.180117 CACTCAGACCATTCTCGTTTCATTT 59.820 40.000 0.00 0.00 0.00 2.32
91 92 4.692625 CACTCAGACCATTCTCGTTTCATT 59.307 41.667 0.00 0.00 0.00 2.57
92 93 4.248859 CACTCAGACCATTCTCGTTTCAT 58.751 43.478 0.00 0.00 0.00 2.57
93 94 3.653344 CACTCAGACCATTCTCGTTTCA 58.347 45.455 0.00 0.00 0.00 2.69
163 167 0.236711 GATCCTTTCCATGCGATGCG 59.763 55.000 0.00 0.00 0.00 4.73
316 323 2.348998 CTGGCGGCAAGGAAGACT 59.651 61.111 14.48 0.00 0.00 3.24
353 361 0.816825 GAGTGGCATGGTCATCGCAT 60.817 55.000 0.00 0.00 0.00 4.73
355 363 2.528743 CGAGTGGCATGGTCATCGC 61.529 63.158 0.00 0.00 0.00 4.58
369 377 2.352032 GCACCCACTAGGAGCGAGT 61.352 63.158 0.00 0.00 42.69 4.18
370 378 2.496817 GCACCCACTAGGAGCGAG 59.503 66.667 0.00 0.00 42.69 5.03
374 382 0.036952 CACACAGCACCCACTAGGAG 60.037 60.000 0.00 0.00 39.89 3.69
376 384 1.672356 GCACACAGCACCCACTAGG 60.672 63.158 0.00 0.00 44.79 3.02
377 385 2.029288 CGCACACAGCACCCACTAG 61.029 63.158 0.00 0.00 46.13 2.57
379 387 3.697439 AACGCACACAGCACCCACT 62.697 57.895 0.00 0.00 46.13 4.00
380 388 3.209097 AACGCACACAGCACCCAC 61.209 61.111 0.00 0.00 46.13 4.61
381 389 2.956799 ATCAACGCACACAGCACCCA 62.957 55.000 0.00 0.00 46.13 4.51
382 390 1.795170 AATCAACGCACACAGCACCC 61.795 55.000 0.00 0.00 46.13 4.61
383 391 0.030638 AAATCAACGCACACAGCACC 59.969 50.000 0.00 0.00 46.13 5.01
384 392 1.838913 AAAATCAACGCACACAGCAC 58.161 45.000 0.00 0.00 46.13 4.40
385 393 2.159324 TGAAAAATCAACGCACACAGCA 60.159 40.909 0.00 0.00 46.13 4.41
388 396 5.431420 AGTATGAAAAATCAACGCACACA 57.569 34.783 0.00 0.00 0.00 3.72
390 398 5.703592 AGGTAGTATGAAAAATCAACGCACA 59.296 36.000 0.00 0.00 0.00 4.57
394 402 7.545965 AGACAGAGGTAGTATGAAAAATCAACG 59.454 37.037 0.00 0.00 0.00 4.10
413 494 4.926238 AGCGACAAGTAATTTCAGACAGAG 59.074 41.667 0.00 0.00 0.00 3.35
416 497 4.627058 TGAGCGACAAGTAATTTCAGACA 58.373 39.130 0.00 0.00 0.00 3.41
420 501 4.319190 CCGTTTGAGCGACAAGTAATTTCA 60.319 41.667 0.00 0.00 39.77 2.69
421 502 4.084223 TCCGTTTGAGCGACAAGTAATTTC 60.084 41.667 0.00 0.00 39.77 2.17
428 509 1.148310 ACATCCGTTTGAGCGACAAG 58.852 50.000 0.00 0.00 39.77 3.16
440 521 9.698309 CATGAAAATAAGTCTAGATACATCCGT 57.302 33.333 0.00 0.00 0.00 4.69
441 522 8.651588 GCATGAAAATAAGTCTAGATACATCCG 58.348 37.037 0.00 0.00 0.00 4.18
442 523 9.717942 AGCATGAAAATAAGTCTAGATACATCC 57.282 33.333 0.00 0.00 0.00 3.51
463 544 7.535258 GTCGCTTAAATGGATGTATTTAGCATG 59.465 37.037 0.00 0.00 34.87 4.06
464 545 7.228507 TGTCGCTTAAATGGATGTATTTAGCAT 59.771 33.333 0.00 0.00 34.87 3.79
465 546 6.540551 TGTCGCTTAAATGGATGTATTTAGCA 59.459 34.615 0.00 0.00 34.87 3.49
467 548 8.559536 ACATGTCGCTTAAATGGATGTATTTAG 58.440 33.333 0.00 0.00 34.87 1.85
469 550 7.333528 ACATGTCGCTTAAATGGATGTATTT 57.666 32.000 0.00 0.00 34.78 1.40
470 551 6.942532 ACATGTCGCTTAAATGGATGTATT 57.057 33.333 0.00 0.00 0.00 1.89
473 554 6.942532 ATTACATGTCGCTTAAATGGATGT 57.057 33.333 0.00 0.00 0.00 3.06
476 557 5.007234 CGGAATTACATGTCGCTTAAATGGA 59.993 40.000 0.00 0.00 0.00 3.41
478 559 5.007234 TCCGGAATTACATGTCGCTTAAATG 59.993 40.000 0.00 0.00 0.00 2.32
485 566 0.575390 CGTCCGGAATTACATGTCGC 59.425 55.000 5.23 0.00 0.00 5.19
487 568 2.470821 CTCCGTCCGGAATTACATGTC 58.529 52.381 5.23 0.00 44.66 3.06
488 569 1.138266 CCTCCGTCCGGAATTACATGT 59.862 52.381 5.23 2.69 44.66 3.21
494 575 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
497 578 0.846015 TATTACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
499 580 1.878734 GAGTATTACTCCCTCCGTCCG 59.121 57.143 12.06 0.00 39.28 4.79
511 592 9.863845 GCTCTTATATTTCAGAGGGAGTATTAC 57.136 37.037 7.86 0.00 37.59 1.89
521 602 9.522804 AGTTCTAAACGCTCTTATATTTCAGAG 57.477 33.333 0.00 0.00 39.78 3.35
522 603 9.871238 AAGTTCTAAACGCTCTTATATTTCAGA 57.129 29.630 0.00 0.00 36.23 3.27
529 610 9.918630 ACAGTTAAAGTTCTAAACGCTCTTATA 57.081 29.630 0.00 0.00 36.23 0.98
531 612 9.403110 CTACAGTTAAAGTTCTAAACGCTCTTA 57.597 33.333 0.00 0.00 36.23 2.10
534 615 6.145048 TGCTACAGTTAAAGTTCTAAACGCTC 59.855 38.462 0.00 0.00 36.23 5.03
535 616 5.987347 TGCTACAGTTAAAGTTCTAAACGCT 59.013 36.000 0.00 0.00 36.23 5.07
537 618 7.793902 ACATGCTACAGTTAAAGTTCTAAACG 58.206 34.615 0.00 0.00 36.23 3.60
538 619 8.770828 TGACATGCTACAGTTAAAGTTCTAAAC 58.229 33.333 0.00 0.00 0.00 2.01
539 620 8.896320 TGACATGCTACAGTTAAAGTTCTAAA 57.104 30.769 0.00 0.00 0.00 1.85
540 621 9.151471 GATGACATGCTACAGTTAAAGTTCTAA 57.849 33.333 0.00 0.00 0.00 2.10
544 625 7.755591 CATGATGACATGCTACAGTTAAAGTT 58.244 34.615 0.00 0.00 45.51 2.66
562 738 1.402896 GGCGGGGTCTCTCATGATGA 61.403 60.000 0.00 0.00 0.00 2.92
567 743 0.982852 TCATTGGCGGGGTCTCTCAT 60.983 55.000 0.00 0.00 0.00 2.90
579 757 1.410153 GTTGGATGGGTGATCATTGGC 59.590 52.381 0.00 0.00 31.91 4.52
611 789 1.214923 TGATTATGGTGCCAGATGCCA 59.785 47.619 0.00 0.00 40.16 4.92
668 848 1.495951 GTTTAAGGCCGACTGCACG 59.504 57.895 0.00 0.00 43.89 5.34
669 849 0.887387 TGGTTTAAGGCCGACTGCAC 60.887 55.000 0.00 0.00 43.89 4.57
670 850 0.605319 CTGGTTTAAGGCCGACTGCA 60.605 55.000 0.00 0.00 43.89 4.41
671 851 0.605589 ACTGGTTTAAGGCCGACTGC 60.606 55.000 0.00 0.00 40.16 4.40
672 852 1.156736 CACTGGTTTAAGGCCGACTG 58.843 55.000 0.00 0.00 0.00 3.51
673 853 1.053424 TCACTGGTTTAAGGCCGACT 58.947 50.000 0.00 0.00 0.00 4.18
675 855 1.339631 CCATCACTGGTTTAAGGCCGA 60.340 52.381 0.00 0.00 37.79 5.54
676 856 1.094785 CCATCACTGGTTTAAGGCCG 58.905 55.000 0.00 0.00 37.79 6.13
677 857 0.817654 GCCATCACTGGTTTAAGGCC 59.182 55.000 0.00 0.00 45.10 5.19
712 892 3.933048 CTGCAGGACAAGCCAGGGG 62.933 68.421 5.57 0.00 40.02 4.79
743 930 4.502087 CCATTCTACACAGCTAGCTATGCA 60.502 45.833 22.79 9.49 0.00 3.96
747 934 3.637229 GACCCATTCTACACAGCTAGCTA 59.363 47.826 18.86 0.00 0.00 3.32
799 992 0.535797 CTACTTTGGGGACTCCGACC 59.464 60.000 0.00 0.00 38.76 4.79
847 1040 2.215196 AGTCGCGCTGGAGTTTTAAAA 58.785 42.857 5.56 0.00 0.00 1.52
878 1071 1.003118 TGTGTCAATGTGGGGACTAGC 59.997 52.381 0.00 0.00 35.11 3.42
1452 1723 2.921538 GATGCACTCGTCGACGGAGG 62.922 65.000 35.05 25.88 40.29 4.30
1508 1779 2.091541 GGGTGTGAGAGAGACTGAGAG 58.908 57.143 0.00 0.00 0.00 3.20
1509 1780 1.272203 GGGGTGTGAGAGAGACTGAGA 60.272 57.143 0.00 0.00 0.00 3.27
1510 1781 1.181786 GGGGTGTGAGAGAGACTGAG 58.818 60.000 0.00 0.00 0.00 3.35
1511 1782 0.609406 CGGGGTGTGAGAGAGACTGA 60.609 60.000 0.00 0.00 0.00 3.41
1512 1783 1.886585 CGGGGTGTGAGAGAGACTG 59.113 63.158 0.00 0.00 0.00 3.51
1513 1784 1.979693 GCGGGGTGTGAGAGAGACT 60.980 63.158 0.00 0.00 0.00 3.24
1516 1787 4.135153 CGGCGGGGTGTGAGAGAG 62.135 72.222 0.00 0.00 0.00 3.20
1532 1803 6.793349 ACTAGCCAGTAGTATTACTTGAACG 58.207 40.000 0.85 0.00 40.47 3.95
1550 1821 2.435069 GGAAGGGGAGAAACTACTAGCC 59.565 54.545 0.00 0.00 0.00 3.93
1551 1822 3.376636 AGGAAGGGGAGAAACTACTAGC 58.623 50.000 0.00 0.00 0.00 3.42
1600 1919 7.811713 GGCAATTATTAGCTCAAATCAAGGATC 59.188 37.037 0.00 0.00 0.00 3.36
1628 1947 2.606961 CGCAACTCCGCAAAGCTGA 61.607 57.895 0.00 0.00 0.00 4.26
1630 1949 2.591715 ACGCAACTCCGCAAAGCT 60.592 55.556 0.00 0.00 0.00 3.74
1653 1972 2.555199 AGAGTTTGCTCACACACTGTC 58.445 47.619 0.00 0.00 44.00 3.51
1668 1988 5.694995 TCTTCCAATTGTCCTTCAAGAGTT 58.305 37.500 4.43 0.00 39.55 3.01
1684 2004 3.281727 AAACAGACACTGCTCTTCCAA 57.718 42.857 0.00 0.00 34.37 3.53
1685 2005 2.945008 CAAAACAGACACTGCTCTTCCA 59.055 45.455 0.00 0.00 34.37 3.53
1697 2017 2.618709 AGCAGGCAGTAACAAAACAGAC 59.381 45.455 0.00 0.00 0.00 3.51
1699 2022 2.618241 TGAGCAGGCAGTAACAAAACAG 59.382 45.455 0.00 0.00 0.00 3.16
1713 2036 5.826737 ACATCTCCTTGAAAATATGAGCAGG 59.173 40.000 0.00 0.00 0.00 4.85
1745 2068 5.880054 AAGAACAATTCACCTAATCCACG 57.120 39.130 0.00 0.00 0.00 4.94
1819 2154 0.995024 CAAGAGGTTGATCCCCAGGT 59.005 55.000 1.75 0.00 35.46 4.00
1851 2186 3.225104 ACATGATTTCCACACAGCAACT 58.775 40.909 0.00 0.00 0.00 3.16
1852 2187 3.648339 ACATGATTTCCACACAGCAAC 57.352 42.857 0.00 0.00 0.00 4.17
1855 2190 3.981211 ACAAACATGATTTCCACACAGC 58.019 40.909 0.00 0.00 0.00 4.40
1857 2192 4.569966 GCAAACAAACATGATTTCCACACA 59.430 37.500 0.00 0.00 0.00 3.72
1867 2202 7.140705 CAGATTCAAGTAGCAAACAAACATGA 58.859 34.615 0.00 0.00 0.00 3.07
1868 2203 6.364165 CCAGATTCAAGTAGCAAACAAACATG 59.636 38.462 0.00 0.00 0.00 3.21
1875 2210 5.644644 CAATCCCAGATTCAAGTAGCAAAC 58.355 41.667 0.00 0.00 0.00 2.93
2055 2614 6.746104 TTGCAAAATAAAAGTGACATGTCG 57.254 33.333 20.54 3.25 0.00 4.35
2081 2640 6.090783 GGGTTAAACTTTGACCATCGATTTC 58.909 40.000 15.41 0.00 35.11 2.17
2161 2720 2.865551 GTTGCAAAATGTTGGTCACTGG 59.134 45.455 0.00 0.00 35.10 4.00
2183 2742 5.708697 TGTTTTGACGATACCTCAGACTAGA 59.291 40.000 0.00 0.00 0.00 2.43
2184 2743 5.950883 TGTTTTGACGATACCTCAGACTAG 58.049 41.667 0.00 0.00 0.00 2.57
2185 2744 5.708697 TCTGTTTTGACGATACCTCAGACTA 59.291 40.000 0.00 0.00 0.00 2.59
2186 2745 4.523173 TCTGTTTTGACGATACCTCAGACT 59.477 41.667 0.00 0.00 0.00 3.24
2187 2746 4.806330 TCTGTTTTGACGATACCTCAGAC 58.194 43.478 0.00 0.00 0.00 3.51
2259 2820 5.647658 AGAGTTGCATCATTTGGTATTTCGA 59.352 36.000 0.00 0.00 0.00 3.71
2260 2821 5.883661 AGAGTTGCATCATTTGGTATTTCG 58.116 37.500 0.00 0.00 0.00 3.46
2357 2919 6.150307 AGTTCAGACAGACTCACTATACACTG 59.850 42.308 0.00 0.00 0.00 3.66
2406 2968 3.914312 ACCTAGGCGTATTGATTCATCG 58.086 45.455 9.30 0.00 0.00 3.84
2532 3094 9.457436 AAAGTGAAGTTTGAAAGTTCTAGGTTA 57.543 29.630 21.92 2.74 40.65 2.85
2677 3245 2.921754 GAGAGTACATTCGGTGGTTTCG 59.078 50.000 0.00 0.00 0.00 3.46
2686 3254 2.534298 CACAGCCTGAGAGTACATTCG 58.466 52.381 0.00 0.00 0.00 3.34
2758 3327 2.549282 CGTTTTGTGGCGACCGAG 59.451 61.111 0.00 0.00 0.00 4.63
2827 3396 7.072328 TGGAAGATACAATGGAGATACAATGGA 59.928 37.037 0.00 0.00 0.00 3.41
2828 3397 7.173907 GTGGAAGATACAATGGAGATACAATGG 59.826 40.741 0.00 0.00 0.00 3.16
2829 3398 7.716560 TGTGGAAGATACAATGGAGATACAATG 59.283 37.037 0.00 0.00 0.00 2.82
2830 3399 7.716998 GTGTGGAAGATACAATGGAGATACAAT 59.283 37.037 0.00 0.00 0.00 2.71
2831 3400 7.047891 GTGTGGAAGATACAATGGAGATACAA 58.952 38.462 0.00 0.00 0.00 2.41
2832 3401 6.384015 AGTGTGGAAGATACAATGGAGATACA 59.616 38.462 0.00 0.00 0.00 2.29
2833 3402 6.821388 AGTGTGGAAGATACAATGGAGATAC 58.179 40.000 0.00 0.00 0.00 2.24
2834 3403 8.727100 ATAGTGTGGAAGATACAATGGAGATA 57.273 34.615 0.00 0.00 0.00 1.98
2835 3404 5.965033 AGTGTGGAAGATACAATGGAGAT 57.035 39.130 0.00 0.00 0.00 2.75
2836 3405 6.611236 TGATAGTGTGGAAGATACAATGGAGA 59.389 38.462 0.00 0.00 0.00 3.71
2837 3406 6.820335 TGATAGTGTGGAAGATACAATGGAG 58.180 40.000 0.00 0.00 0.00 3.86
2861 3430 8.023128 CCAAAACGAACTCATACATCAAAGAAT 58.977 33.333 0.00 0.00 0.00 2.40
2868 3437 6.761714 ACTATCCCAAAACGAACTCATACATC 59.238 38.462 0.00 0.00 0.00 3.06
3036 3605 1.228245 ACAACGGGATGCAAGCACT 60.228 52.632 0.00 0.00 0.00 4.40
3105 3674 5.430886 CACATAAGGAAGACATCACCATGA 58.569 41.667 0.00 0.00 33.72 3.07
3171 3740 1.727880 GTGCTACCGAAAACGCATACA 59.272 47.619 0.00 0.00 34.60 2.29
3186 3755 6.649155 ACATTGACATATACAACCAGTGCTA 58.351 36.000 0.00 0.00 0.00 3.49
3187 3756 5.500234 ACATTGACATATACAACCAGTGCT 58.500 37.500 0.00 0.00 0.00 4.40
3235 3806 6.099125 TCAGTGTATATTAACAGGGCTAAGCA 59.901 38.462 0.00 0.00 0.00 3.91
3497 4070 2.008242 AGCCCTTATGTGCCACAAAA 57.992 45.000 0.00 0.00 0.00 2.44
3504 4077 5.182380 TGTTAACAAAGTAGCCCTTATGTGC 59.818 40.000 5.64 0.00 31.48 4.57
3543 4116 6.312399 TGACACAACTGTTATGGATCAAAC 57.688 37.500 3.63 0.00 0.00 2.93
3615 4188 7.570132 TGCCTTCTAGGTTTACATGCTATTTA 58.430 34.615 0.00 0.00 37.80 1.40
3714 4287 5.905480 CAACCTTTGCCTAACATCAAAAC 57.095 39.130 0.00 0.00 32.55 2.43
3735 4308 3.495331 ACCCTATTGTTGTTGACATGCA 58.505 40.909 0.00 0.00 38.26 3.96
3736 4309 3.505680 TGACCCTATTGTTGTTGACATGC 59.494 43.478 0.00 0.00 38.26 4.06
3742 4315 7.432869 TCTCAAAAATGACCCTATTGTTGTTG 58.567 34.615 0.00 0.00 36.86 3.33
3743 4316 7.595819 TCTCAAAAATGACCCTATTGTTGTT 57.404 32.000 0.00 0.00 36.86 2.83
3744 4317 7.595819 TTCTCAAAAATGACCCTATTGTTGT 57.404 32.000 0.00 0.00 36.86 3.32
3857 4430 9.784531 ATCACATTCTTACACTTATATTCCAGG 57.215 33.333 0.00 0.00 0.00 4.45
4159 4732 2.339769 ACTACTTCCTTCAGGCCTTGT 58.660 47.619 0.00 0.00 34.44 3.16
4166 4739 5.696724 CAGTGTGGTTAACTACTTCCTTCAG 59.303 44.000 20.97 2.45 0.00 3.02
4314 4982 7.821846 ACACAACATGTTACAAACAAAGGAATT 59.178 29.630 11.53 0.00 45.86 2.17
4315 4983 7.327214 ACACAACATGTTACAAACAAAGGAAT 58.673 30.769 11.53 0.00 45.86 3.01
4436 5105 9.549078 GGAATAAAAACAACAAATGGTAGGAAA 57.451 29.630 0.00 0.00 0.00 3.13
4669 5338 5.246307 AGCAACCTAAGATGTCAGTTTACC 58.754 41.667 0.00 0.00 0.00 2.85
4682 5351 7.615582 TCTTCACAAATATGAGCAACCTAAG 57.384 36.000 0.00 0.00 0.00 2.18
4736 5405 2.380064 CCCAATTAATGCAGGGCCTA 57.620 50.000 5.28 0.00 33.91 3.93
4835 5505 2.094762 AACATACCACGAAGAGCACC 57.905 50.000 0.00 0.00 0.00 5.01
5007 5677 2.345760 GGCCTGCATGTTGTGAGGG 61.346 63.158 0.00 0.00 0.00 4.30
5068 5738 2.777832 ACATTGAGAGGAACAGGCTC 57.222 50.000 0.00 0.00 0.00 4.70
5107 5777 7.959175 AGTTAGGGGTTGAAATAAAAAGAACC 58.041 34.615 0.00 0.00 36.18 3.62
5176 5846 3.638160 AGAAACACCATGAATTGCTGTGT 59.362 39.130 0.00 0.00 41.61 3.72
5208 5878 1.941999 GAAGCATGTCCAAGCCCTGC 61.942 60.000 0.00 0.00 0.00 4.85
5291 5961 2.084546 GGTCCATGAGGTAAACTGTGC 58.915 52.381 0.00 0.00 35.89 4.57
5325 6000 6.074544 AGTTAGTATCGCAGAGATGGTTAC 57.925 41.667 0.00 0.00 43.63 2.50
5548 6280 1.452953 CCTGGGCATAGCAGTGCATG 61.453 60.000 19.20 18.36 46.81 4.06
5644 6379 5.065218 GGATGTACTAGAATGGTGTTTGCTG 59.935 44.000 0.00 0.00 0.00 4.41
5769 6504 4.677584 ACTCTTGCACTAAGATCGATCAC 58.322 43.478 26.47 9.37 44.12 3.06
5770 6505 4.991153 ACTCTTGCACTAAGATCGATCA 57.009 40.909 26.47 6.72 44.12 2.92
5771 6506 6.307031 TCTACTCTTGCACTAAGATCGATC 57.693 41.667 17.91 17.91 44.12 3.69
5772 6507 6.892658 ATCTACTCTTGCACTAAGATCGAT 57.107 37.500 0.00 0.00 44.12 3.59
5827 6562 2.277858 CCTCCTGTACAAGGCTCGT 58.722 57.895 0.61 0.00 46.92 4.18
6100 6846 1.333619 CTTGGGGAGTGTGAAAACACG 59.666 52.381 3.52 0.00 44.71 4.49
6152 6899 0.820871 GTCACCACCCAGCACAAAAA 59.179 50.000 0.00 0.00 0.00 1.94
6251 7003 0.828022 TGGCGAGGGACGTTCATAAT 59.172 50.000 0.00 0.00 44.60 1.28
6278 7033 2.159366 ACCGAACTTCTGACGCTCATAG 60.159 50.000 0.00 0.00 0.00 2.23
6294 7049 1.610038 TGTTGAAGCTACGAGACCGAA 59.390 47.619 0.00 0.00 39.50 4.30
6295 7050 1.241165 TGTTGAAGCTACGAGACCGA 58.759 50.000 0.00 0.00 39.50 4.69
6296 7051 1.719780 GTTGTTGAAGCTACGAGACCG 59.280 52.381 0.00 0.00 42.50 4.79
6297 7052 2.067013 GGTTGTTGAAGCTACGAGACC 58.933 52.381 0.00 0.00 0.00 3.85
6298 7053 2.067013 GGGTTGTTGAAGCTACGAGAC 58.933 52.381 0.00 0.00 0.00 3.36
6413 7176 2.469465 ATTGGTGTGCCGAGGGTGAG 62.469 60.000 0.00 0.00 37.67 3.51
6479 7242 3.299977 GGGTTTGACCGGCCCAAC 61.300 66.667 0.00 0.00 39.83 3.77
6480 7243 4.607025 GGGGTTTGACCGGCCCAA 62.607 66.667 15.17 10.64 44.07 4.12
6488 7251 1.966451 CTGACGGCTGGGGTTTGAC 60.966 63.158 0.00 0.00 0.00 3.18
6489 7252 1.488705 ATCTGACGGCTGGGGTTTGA 61.489 55.000 0.00 0.00 0.00 2.69
6490 7253 1.002134 ATCTGACGGCTGGGGTTTG 60.002 57.895 0.00 0.00 0.00 2.93
6491 7254 1.201429 AGATCTGACGGCTGGGGTTT 61.201 55.000 0.00 0.00 0.00 3.27
6493 7256 2.039624 AGATCTGACGGCTGGGGT 59.960 61.111 0.00 0.00 0.00 4.95
6494 7257 2.503061 CAGATCTGACGGCTGGGG 59.497 66.667 18.34 0.00 0.00 4.96
6495 7258 2.503061 CCAGATCTGACGGCTGGG 59.497 66.667 24.62 0.21 44.24 4.45
6497 7260 0.460987 GGAACCAGATCTGACGGCTG 60.461 60.000 24.62 8.51 0.00 4.85
6498 7261 1.901085 GGAACCAGATCTGACGGCT 59.099 57.895 24.62 0.00 0.00 5.52
6499 7262 4.522971 GGAACCAGATCTGACGGC 57.477 61.111 24.62 9.86 0.00 5.68
6512 7275 0.741221 GATCTGACGGTGCAGGGAAC 60.741 60.000 0.00 0.00 36.55 3.62
6513 7276 1.596934 GATCTGACGGTGCAGGGAA 59.403 57.895 0.00 0.00 36.55 3.97
6515 7278 2.187946 GGATCTGACGGTGCAGGG 59.812 66.667 0.00 0.00 36.55 4.45
6517 7280 0.460987 GAAGGGATCTGACGGTGCAG 60.461 60.000 0.00 0.00 37.24 4.41
6518 7281 1.596934 GAAGGGATCTGACGGTGCA 59.403 57.895 0.00 0.00 0.00 4.57
6519 7282 1.153349 GGAAGGGATCTGACGGTGC 60.153 63.158 0.00 0.00 0.00 5.01
6520 7283 1.522569 GGGAAGGGATCTGACGGTG 59.477 63.158 0.00 0.00 0.00 4.94
6521 7284 1.689582 GGGGAAGGGATCTGACGGT 60.690 63.158 0.00 0.00 0.00 4.83
6522 7285 2.444256 GGGGGAAGGGATCTGACGG 61.444 68.421 0.00 0.00 0.00 4.79
6537 7300 0.547712 TGAAGAAGGAGGTGAGGGGG 60.548 60.000 0.00 0.00 0.00 5.40
6538 7301 1.003696 GTTGAAGAAGGAGGTGAGGGG 59.996 57.143 0.00 0.00 0.00 4.79
6540 7303 1.981495 AGGTTGAAGAAGGAGGTGAGG 59.019 52.381 0.00 0.00 0.00 3.86
6541 7304 2.027653 GGAGGTTGAAGAAGGAGGTGAG 60.028 54.545 0.00 0.00 0.00 3.51
6542 7305 1.978580 GGAGGTTGAAGAAGGAGGTGA 59.021 52.381 0.00 0.00 0.00 4.02
6543 7306 1.003696 GGGAGGTTGAAGAAGGAGGTG 59.996 57.143 0.00 0.00 0.00 4.00
6545 7308 0.250513 CGGGAGGTTGAAGAAGGAGG 59.749 60.000 0.00 0.00 0.00 4.30
6546 7309 0.391793 GCGGGAGGTTGAAGAAGGAG 60.392 60.000 0.00 0.00 0.00 3.69
6548 7311 0.955919 GTGCGGGAGGTTGAAGAAGG 60.956 60.000 0.00 0.00 0.00 3.46
6549 7312 1.291877 CGTGCGGGAGGTTGAAGAAG 61.292 60.000 0.00 0.00 0.00 2.85
6551 7314 2.342279 CGTGCGGGAGGTTGAAGA 59.658 61.111 0.00 0.00 0.00 2.87
6552 7315 2.742372 CCGTGCGGGAGGTTGAAG 60.742 66.667 2.15 0.00 38.47 3.02
6622 7385 3.775654 GTGAGGAGGTGGGGCGAG 61.776 72.222 0.00 0.00 0.00 5.03
6675 7438 2.063979 CATAGGTGAGGGTGGGCGA 61.064 63.158 0.00 0.00 0.00 5.54
6676 7439 2.311688 GACATAGGTGAGGGTGGGCG 62.312 65.000 0.00 0.00 0.00 6.13
6677 7440 1.527370 GACATAGGTGAGGGTGGGC 59.473 63.158 0.00 0.00 0.00 5.36
6678 7441 0.976073 ACGACATAGGTGAGGGTGGG 60.976 60.000 0.00 0.00 0.00 4.61
6682 7445 1.065701 CGAAGACGACATAGGTGAGGG 59.934 57.143 0.00 0.00 42.66 4.30
6683 7446 1.743958 ACGAAGACGACATAGGTGAGG 59.256 52.381 0.00 0.00 42.66 3.86
6684 7447 2.161808 ACACGAAGACGACATAGGTGAG 59.838 50.000 0.00 0.00 42.66 3.51
6685 7448 2.156917 ACACGAAGACGACATAGGTGA 58.843 47.619 0.00 0.00 42.66 4.02
6686 7449 2.631418 ACACGAAGACGACATAGGTG 57.369 50.000 0.00 0.00 42.66 4.00
6687 7450 2.942710 CAACACGAAGACGACATAGGT 58.057 47.619 0.00 0.00 42.66 3.08



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.