Multiple sequence alignment - TraesCS4D01G303900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G303900 chr4D 100.000 4060 0 0 1 4060 472211181 472207122 0.000000e+00 7498.0
1 TraesCS4D01G303900 chr4D 81.525 341 53 9 1536 1871 472167648 472167313 5.170000e-69 272.0
2 TraesCS4D01G303900 chr4D 96.429 56 2 0 2481 2536 472166757 472166702 4.320000e-15 93.5
3 TraesCS4D01G303900 chr4B 89.670 1607 76 39 809 2394 594438931 594437394 0.000000e+00 1965.0
4 TraesCS4D01G303900 chr4B 91.405 861 44 18 2426 3279 594437391 594436554 0.000000e+00 1153.0
5 TraesCS4D01G303900 chr4B 87.258 722 65 10 3357 4060 594432724 594432012 0.000000e+00 798.0
6 TraesCS4D01G303900 chr4B 81.818 341 52 9 1536 1871 594360744 594360409 1.110000e-70 278.0
7 TraesCS4D01G303900 chr4B 85.036 274 25 10 525 790 594439264 594438999 8.650000e-67 265.0
8 TraesCS4D01G303900 chr4B 82.043 323 29 21 2 305 594440098 594439786 8.710000e-62 248.0
9 TraesCS4D01G303900 chr4A 90.305 1475 74 33 1147 2580 679086528 679085082 0.000000e+00 1868.0
10 TraesCS4D01G303900 chr4A 93.265 490 23 7 2674 3162 679085086 679084606 0.000000e+00 713.0
11 TraesCS4D01G303900 chr4A 82.873 362 32 23 116 467 679092558 679092217 8.530000e-77 298.0
12 TraesCS4D01G303900 chr4A 83.974 312 27 14 809 1107 679086839 679086538 1.110000e-70 278.0
13 TraesCS4D01G303900 chr4A 88.789 223 15 4 3479 3691 309449238 309449016 8.650000e-67 265.0
14 TraesCS4D01G303900 chr4A 91.406 128 6 2 2 127 679092716 679092592 1.940000e-38 171.0
15 TraesCS4D01G303900 chr4A 86.364 88 11 1 2481 2567 679076578 679076491 1.200000e-15 95.3
16 TraesCS4D01G303900 chrUn 89.238 223 14 4 3479 3691 53260377 53260155 1.860000e-68 270.0
17 TraesCS4D01G303900 chrUn 88.341 223 16 4 3479 3691 261570605 261570383 4.030000e-65 259.0
18 TraesCS4D01G303900 chrUn 88.393 224 15 4 3479 3691 388894262 388894485 4.030000e-65 259.0
19 TraesCS4D01G303900 chr3A 88.839 224 14 4 3479 3691 105559810 105559587 8.650000e-67 265.0
20 TraesCS4D01G303900 chr1B 88.839 224 14 4 3479 3691 633714128 633714351 8.650000e-67 265.0
21 TraesCS4D01G303900 chr1A 88.444 225 14 4 3479 3691 554479407 554479631 1.120000e-65 261.0
22 TraesCS4D01G303900 chr2B 89.286 84 7 2 2482 2564 165245767 165245849 2.000000e-18 104.0
23 TraesCS4D01G303900 chr2B 87.671 73 7 2 2493 2564 165252554 165252625 2.600000e-12 84.2
24 TraesCS4D01G303900 chr2D 90.411 73 5 2 2493 2564 114695114 114695185 1.200000e-15 95.3
25 TraesCS4D01G303900 chr2D 91.803 61 3 2 2493 2552 114729831 114729890 2.600000e-12 84.2
26 TraesCS4D01G303900 chr2A 87.671 73 7 2 2493 2564 116154137 116154208 2.600000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G303900 chr4D 472207122 472211181 4059 True 7498.0 7498 100.000000 1 4060 1 chr4D.!!$R1 4059
1 TraesCS4D01G303900 chr4B 594432012 594440098 8086 True 885.8 1965 87.082400 2 4060 5 chr4B.!!$R2 4058
2 TraesCS4D01G303900 chr4A 679084606 679086839 2233 True 953.0 1868 89.181333 809 3162 3 chr4A.!!$R3 2353

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.038435 TTGTTGCACCGCATTCATGG 60.038 50.0 0.00 0.00 38.76 3.66 F
1071 1484 0.036105 TTCATGCATGCTCGACCTGT 60.036 50.0 22.25 0.00 0.00 4.00 F
1134 1554 0.034059 GCTCACTATCGGTCCCATGG 59.966 60.0 4.14 4.14 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1115 1535 0.034059 CCATGGGACCGATAGTGAGC 59.966 60.0 2.85 0.00 0.00 4.26 R
2629 3095 0.034198 TGGCCGTGTTCTCATCGAAA 59.966 50.0 0.00 0.00 32.41 3.46 R
3064 3533 0.173255 GACCAACATTTCGCCCATGG 59.827 55.0 4.14 4.14 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.158025 CGGAGACTATAGACCACAGTTGTT 59.842 45.833 6.78 0.00 0.00 2.83
46 47 5.411781 GGAGACTATAGACCACAGTTGTTG 58.588 45.833 6.78 0.00 0.00 3.33
47 48 4.822026 AGACTATAGACCACAGTTGTTGC 58.178 43.478 6.78 0.00 0.00 4.17
60 61 0.038435 TTGTTGCACCGCATTCATGG 60.038 50.000 0.00 0.00 38.76 3.66
68 69 2.689785 CGCATTCATGGCACCACGT 61.690 57.895 0.00 0.00 0.00 4.49
69 70 1.137404 GCATTCATGGCACCACGTC 59.863 57.895 0.00 0.00 0.00 4.34
70 71 1.308069 GCATTCATGGCACCACGTCT 61.308 55.000 0.00 0.00 0.00 4.18
71 72 0.448990 CATTCATGGCACCACGTCTG 59.551 55.000 0.00 0.00 0.00 3.51
103 104 0.506506 CGGCCATTTTGTTTTGTCGC 59.493 50.000 2.24 0.00 0.00 5.19
105 106 0.506506 GCCATTTTGTTTTGTCGCCG 59.493 50.000 0.00 0.00 0.00 6.46
112 113 1.129209 GTTTTGTCGCCGCGTAGAC 59.871 57.895 19.90 19.90 37.85 2.59
143 147 2.815647 GTGCTCCGCCGGAAGAAG 60.816 66.667 7.50 0.00 0.00 2.85
145 149 2.202810 GCTCCGCCGGAAGAAGAG 60.203 66.667 7.50 3.80 0.00 2.85
190 194 3.414700 CGTGCTTCCAGCCACGTC 61.415 66.667 5.13 0.00 41.51 4.34
192 196 4.329545 TGCTTCCAGCCACGTCCC 62.330 66.667 0.00 0.00 41.51 4.46
211 215 3.266477 CCCCCAGATTCAGATCTAGGA 57.734 52.381 0.00 0.00 41.96 2.94
212 216 3.172339 CCCCCAGATTCAGATCTAGGAG 58.828 54.545 0.00 0.00 41.96 3.69
214 218 4.202727 CCCCCAGATTCAGATCTAGGAGTA 60.203 50.000 0.00 0.00 41.96 2.59
218 227 6.657541 CCCAGATTCAGATCTAGGAGTACTAC 59.342 46.154 0.00 0.00 41.96 2.73
237 247 0.374758 CGCTCGCTTTACACATGCAT 59.625 50.000 0.00 0.00 0.00 3.96
238 248 1.818850 GCTCGCTTTACACATGCATG 58.181 50.000 25.09 25.09 0.00 4.06
239 249 1.398041 GCTCGCTTTACACATGCATGA 59.602 47.619 32.75 8.19 0.00 3.07
240 250 2.538333 GCTCGCTTTACACATGCATGAG 60.538 50.000 32.75 26.51 0.00 2.90
241 251 1.398041 TCGCTTTACACATGCATGAGC 59.602 47.619 32.75 26.27 42.57 4.26
243 253 1.532505 GCTTTACACATGCATGAGCCG 60.533 52.381 32.75 18.64 41.13 5.52
249 259 1.002792 CACATGCATGAGCCGATGAAG 60.003 52.381 32.75 1.99 41.13 3.02
266 276 1.599606 AAGGGCGCACACAAACACAA 61.600 50.000 14.57 0.00 0.00 3.33
270 284 1.068287 GCGCACACAAACACAAACGT 61.068 50.000 0.30 0.00 0.00 3.99
275 289 3.734031 CACACAAACACAAACGTACGAA 58.266 40.909 24.41 0.00 0.00 3.85
277 291 3.092854 CACAAACACAAACGTACGAACC 58.907 45.455 24.41 0.00 0.00 3.62
279 293 1.639280 AACACAAACGTACGAACCGT 58.361 45.000 24.41 10.24 44.35 4.83
305 319 3.880846 GCGTATGCTGGCTGTGGC 61.881 66.667 0.00 0.00 38.39 5.01
315 329 4.603535 GCTGTGGCCTGTGGGGTT 62.604 66.667 3.32 0.00 37.43 4.11
316 330 2.282462 CTGTGGCCTGTGGGGTTC 60.282 66.667 3.32 0.00 37.43 3.62
317 331 3.099841 TGTGGCCTGTGGGGTTCA 61.100 61.111 3.32 0.00 37.43 3.18
318 332 2.282462 GTGGCCTGTGGGGTTCAG 60.282 66.667 3.32 0.00 37.43 3.02
319 333 2.776526 TGGCCTGTGGGGTTCAGT 60.777 61.111 3.32 0.00 37.43 3.41
320 334 1.462432 TGGCCTGTGGGGTTCAGTA 60.462 57.895 3.32 0.00 37.43 2.74
321 335 1.063070 TGGCCTGTGGGGTTCAGTAA 61.063 55.000 3.32 0.00 37.43 2.24
322 336 0.322546 GGCCTGTGGGGTTCAGTAAG 60.323 60.000 0.00 0.00 37.43 2.34
323 337 0.400594 GCCTGTGGGGTTCAGTAAGT 59.599 55.000 0.00 0.00 37.43 2.24
347 361 1.899142 GCTTCTTCCACTCCACTCTCT 59.101 52.381 0.00 0.00 0.00 3.10
348 362 2.301583 GCTTCTTCCACTCCACTCTCTT 59.698 50.000 0.00 0.00 0.00 2.85
349 363 3.864160 GCTTCTTCCACTCCACTCTCTTG 60.864 52.174 0.00 0.00 0.00 3.02
355 369 2.366916 CCACTCCACTCTCTTGTGTCTT 59.633 50.000 0.00 0.00 36.30 3.01
356 370 3.181461 CCACTCCACTCTCTTGTGTCTTT 60.181 47.826 0.00 0.00 36.30 2.52
357 371 4.446371 CACTCCACTCTCTTGTGTCTTTT 58.554 43.478 0.00 0.00 36.30 2.27
358 372 4.878397 CACTCCACTCTCTTGTGTCTTTTT 59.122 41.667 0.00 0.00 36.30 1.94
360 374 6.708054 CACTCCACTCTCTTGTGTCTTTTTAT 59.292 38.462 0.00 0.00 36.30 1.40
361 375 6.931840 ACTCCACTCTCTTGTGTCTTTTTATC 59.068 38.462 0.00 0.00 36.30 1.75
362 376 7.067496 TCCACTCTCTTGTGTCTTTTTATCT 57.933 36.000 0.00 0.00 36.30 1.98
363 377 7.509546 TCCACTCTCTTGTGTCTTTTTATCTT 58.490 34.615 0.00 0.00 36.30 2.40
364 378 7.442364 TCCACTCTCTTGTGTCTTTTTATCTTG 59.558 37.037 0.00 0.00 36.30 3.02
366 380 8.494347 CACTCTCTTGTGTCTTTTTATCTTGAG 58.506 37.037 0.00 0.00 33.61 3.02
367 381 8.424918 ACTCTCTTGTGTCTTTTTATCTTGAGA 58.575 33.333 0.00 0.00 0.00 3.27
369 383 7.657761 TCTCTTGTGTCTTTTTATCTTGAGACC 59.342 37.037 0.00 0.00 38.14 3.85
371 385 4.994852 TGTGTCTTTTTATCTTGAGACCCG 59.005 41.667 0.00 0.00 38.14 5.28
372 386 4.392138 GTGTCTTTTTATCTTGAGACCCGG 59.608 45.833 0.00 0.00 38.14 5.73
373 387 3.939592 GTCTTTTTATCTTGAGACCCGGG 59.060 47.826 22.25 22.25 34.00 5.73
374 388 2.413310 TTTTATCTTGAGACCCGGGC 57.587 50.000 24.08 14.21 0.00 6.13
376 390 1.281419 TTATCTTGAGACCCGGGCAA 58.719 50.000 24.08 16.28 0.00 4.52
377 391 1.281419 TATCTTGAGACCCGGGCAAA 58.719 50.000 24.08 9.07 0.00 3.68
378 392 0.404040 ATCTTGAGACCCGGGCAAAA 59.596 50.000 24.08 9.46 0.00 2.44
379 393 0.183971 TCTTGAGACCCGGGCAAAAA 59.816 50.000 24.08 9.87 0.00 1.94
406 420 5.799936 GTGTAGTACGTTCGCCAGTAAATTA 59.200 40.000 0.00 0.00 0.00 1.40
407 421 5.799936 TGTAGTACGTTCGCCAGTAAATTAC 59.200 40.000 0.00 0.00 0.00 1.89
408 422 3.853671 AGTACGTTCGCCAGTAAATTACG 59.146 43.478 0.00 0.00 0.00 3.18
409 423 2.676076 ACGTTCGCCAGTAAATTACGT 58.324 42.857 0.00 0.00 36.11 3.57
410 424 3.832276 ACGTTCGCCAGTAAATTACGTA 58.168 40.909 0.00 0.00 38.76 3.57
411 425 4.423732 ACGTTCGCCAGTAAATTACGTAT 58.576 39.130 0.00 0.00 38.76 3.06
412 426 4.266029 ACGTTCGCCAGTAAATTACGTATG 59.734 41.667 0.00 0.00 38.76 2.39
414 428 4.389890 TCGCCAGTAAATTACGTATGGT 57.610 40.909 11.28 0.00 0.00 3.55
416 430 5.280945 TCGCCAGTAAATTACGTATGGTAC 58.719 41.667 11.28 7.08 0.00 3.34
436 450 7.713750 TGGTACACACTTATATTCAGAGTAGC 58.286 38.462 0.00 0.00 0.00 3.58
439 453 9.751542 GTACACACTTATATTCAGAGTAGCATT 57.248 33.333 0.00 0.00 0.00 3.56
441 455 9.672673 ACACACTTATATTCAGAGTAGCATTTT 57.327 29.630 0.00 0.00 0.00 1.82
442 456 9.926751 CACACTTATATTCAGAGTAGCATTTTG 57.073 33.333 0.00 0.00 0.00 2.44
447 461 5.557891 ATTCAGAGTAGCATTTTGAGTGC 57.442 39.130 0.00 0.00 42.81 4.40
448 462 4.006780 TCAGAGTAGCATTTTGAGTGCA 57.993 40.909 0.69 0.00 44.87 4.57
449 463 4.582869 TCAGAGTAGCATTTTGAGTGCAT 58.417 39.130 0.00 0.00 44.87 3.96
451 465 5.814188 TCAGAGTAGCATTTTGAGTGCATAG 59.186 40.000 0.00 0.00 44.87 2.23
452 466 5.814188 CAGAGTAGCATTTTGAGTGCATAGA 59.186 40.000 0.00 0.00 44.87 1.98
453 467 6.482641 CAGAGTAGCATTTTGAGTGCATAGAT 59.517 38.462 0.00 0.00 44.87 1.98
457 511 9.429359 AGTAGCATTTTGAGTGCATAGATATAC 57.571 33.333 0.00 0.00 44.87 1.47
482 536 9.319143 ACTTGCACTAATACTTGATGATACTTC 57.681 33.333 0.00 0.00 0.00 3.01
483 537 9.539825 CTTGCACTAATACTTGATGATACTTCT 57.460 33.333 0.00 0.00 0.00 2.85
484 538 9.534565 TTGCACTAATACTTGATGATACTTCTC 57.465 33.333 0.00 0.00 0.00 2.87
485 539 8.144478 TGCACTAATACTTGATGATACTTCTCC 58.856 37.037 0.00 0.00 0.00 3.71
503 718 4.436998 GGAGGACGAGCACCCGTG 62.437 72.222 3.63 0.00 43.49 4.94
504 719 3.681835 GAGGACGAGCACCCGTGT 61.682 66.667 3.63 0.00 43.49 4.49
505 720 3.916392 GAGGACGAGCACCCGTGTG 62.916 68.421 3.63 0.00 43.49 3.82
539 885 8.207545 GCCTCTTATCTTCTTATCTTCTTCCAA 58.792 37.037 0.00 0.00 0.00 3.53
551 897 0.672401 TCTTCCAATGTCGCCGTTCC 60.672 55.000 0.00 0.00 0.00 3.62
553 899 0.672401 TTCCAATGTCGCCGTTCCTC 60.672 55.000 0.00 0.00 0.00 3.71
555 901 1.375396 CAATGTCGCCGTTCCTCCA 60.375 57.895 0.00 0.00 0.00 3.86
558 904 0.744414 ATGTCGCCGTTCCTCCATTG 60.744 55.000 0.00 0.00 0.00 2.82
561 907 0.461870 TCGCCGTTCCTCCATTGATG 60.462 55.000 0.00 0.00 0.00 3.07
562 908 0.744414 CGCCGTTCCTCCATTGATGT 60.744 55.000 0.00 0.00 0.00 3.06
563 909 1.463674 GCCGTTCCTCCATTGATGTT 58.536 50.000 0.00 0.00 0.00 2.71
564 910 2.639065 GCCGTTCCTCCATTGATGTTA 58.361 47.619 0.00 0.00 0.00 2.41
565 911 2.354821 GCCGTTCCTCCATTGATGTTAC 59.645 50.000 0.00 0.00 0.00 2.50
566 912 3.605634 CCGTTCCTCCATTGATGTTACA 58.394 45.455 0.00 0.00 0.00 2.41
567 913 4.006989 CCGTTCCTCCATTGATGTTACAA 58.993 43.478 0.00 0.00 0.00 2.41
568 914 4.094887 CCGTTCCTCCATTGATGTTACAAG 59.905 45.833 0.00 0.00 33.22 3.16
572 923 3.947834 CCTCCATTGATGTTACAAGGACC 59.052 47.826 0.00 0.00 34.16 4.46
574 925 4.843728 TCCATTGATGTTACAAGGACCTC 58.156 43.478 0.00 0.00 34.16 3.85
588 939 0.394565 GACCTCTCACCAAGCACTGT 59.605 55.000 0.00 0.00 0.00 3.55
589 940 0.107456 ACCTCTCACCAAGCACTGTG 59.893 55.000 2.76 2.76 0.00 3.66
591 942 1.227943 TCTCACCAAGCACTGTGCC 60.228 57.895 27.74 11.22 46.52 5.01
638 989 3.832276 TCGCAATCAAGCAATTAACACC 58.168 40.909 0.00 0.00 0.00 4.16
643 994 2.226330 TCAAGCAATTAACACCGCAGT 58.774 42.857 0.00 0.00 0.00 4.40
651 1002 1.334160 TAACACCGCAGTCTCCTTCA 58.666 50.000 0.00 0.00 0.00 3.02
659 1010 2.349886 CGCAGTCTCCTTCATGCTTAAC 59.650 50.000 0.00 0.00 36.52 2.01
662 1013 2.093447 AGTCTCCTTCATGCTTAACGGG 60.093 50.000 0.00 0.00 0.00 5.28
670 1021 1.472480 CATGCTTAACGGGAAGGTTGG 59.528 52.381 1.37 0.00 0.00 3.77
708 1059 4.014406 ACACTGTATGTCTCGATGTGGTA 58.986 43.478 0.00 0.00 36.54 3.25
752 1103 3.117776 TCCCCATCTTCTGTTGGATGATG 60.118 47.826 11.86 11.86 46.95 3.07
770 1121 2.651361 ACGGGCTGTCTTCGTCAG 59.349 61.111 0.00 0.00 36.18 3.51
780 1131 2.203084 TTCGTCAGTTTGCCGCCA 60.203 55.556 0.00 0.00 0.00 5.69
781 1132 2.443957 CTTCGTCAGTTTGCCGCCAC 62.444 60.000 0.00 0.00 0.00 5.01
796 1147 4.473520 CACGGGGCCGAAGAGCAT 62.474 66.667 0.00 0.00 42.83 3.79
798 1149 2.029666 CGGGGCCGAAGAGCATAG 59.970 66.667 0.00 0.00 42.83 2.23
801 1152 1.301322 GGGCCGAAGAGCATAGAGC 60.301 63.158 0.00 0.00 46.19 4.09
823 1222 5.812642 AGCAGAGTGTAATAACTGAATTCGG 59.187 40.000 12.91 12.91 32.90 4.30
824 1223 5.502544 GCAGAGTGTAATAACTGAATTCGGC 60.503 44.000 14.40 0.00 32.90 5.54
825 1224 4.804139 AGAGTGTAATAACTGAATTCGGCG 59.196 41.667 14.40 0.00 0.00 6.46
892 1296 2.743636 GTAGTGCTGCTACCAACTGA 57.256 50.000 0.00 0.00 43.20 3.41
903 1307 4.640789 CTACCAACTGAGTAGCTAGGTG 57.359 50.000 4.27 0.96 31.47 4.00
904 1308 2.890814 ACCAACTGAGTAGCTAGGTGT 58.109 47.619 4.27 0.00 29.62 4.16
905 1309 4.043608 ACCAACTGAGTAGCTAGGTGTA 57.956 45.455 4.27 0.00 29.62 2.90
906 1310 4.611367 ACCAACTGAGTAGCTAGGTGTAT 58.389 43.478 4.27 0.00 29.62 2.29
923 1327 4.830826 TGTATATACACTCTGGCTCGTG 57.169 45.455 11.62 0.00 37.18 4.35
946 1352 1.303888 AGACCTTGCTCCGTCCGTA 60.304 57.895 0.00 0.00 0.00 4.02
953 1359 1.089920 TGCTCCGTCCGTAGTACTTC 58.910 55.000 0.00 0.00 0.00 3.01
960 1366 3.005554 CGTCCGTAGTACTTCTCCAAGA 58.994 50.000 0.00 0.00 33.34 3.02
992 1398 2.439104 GCCATCTTCTCCGGCCTCT 61.439 63.158 0.00 0.00 40.07 3.69
1008 1414 0.460987 CTCTGGTCTCAATGGCGGAC 60.461 60.000 0.00 0.00 0.00 4.79
1041 1450 2.681344 CCCTATCCGTTGCAAAGGTAAC 59.319 50.000 27.36 2.50 36.41 2.50
1065 1478 1.859703 GAGACTCTTCATGCATGCTCG 59.140 52.381 22.25 11.92 0.00 5.03
1071 1484 0.036105 TTCATGCATGCTCGACCTGT 60.036 50.000 22.25 0.00 0.00 4.00
1085 1505 5.390991 GCTCGACCTGTCCTATTTTTCTTTG 60.391 44.000 0.00 0.00 0.00 2.77
1092 1512 7.015584 ACCTGTCCTATTTTTCTTTGCTTCAAT 59.984 33.333 0.00 0.00 0.00 2.57
1093 1513 7.874528 CCTGTCCTATTTTTCTTTGCTTCAATT 59.125 33.333 0.00 0.00 0.00 2.32
1097 1517 9.260002 TCCTATTTTTCTTTGCTTCAATTCAAC 57.740 29.630 0.00 0.00 0.00 3.18
1107 1527 3.910767 GCTTCAATTCAACGAAGAGCTTG 59.089 43.478 7.29 0.00 40.94 4.01
1108 1528 4.470462 CTTCAATTCAACGAAGAGCTTGG 58.530 43.478 0.00 0.00 40.94 3.61
1110 1530 3.882888 TCAATTCAACGAAGAGCTTGGTT 59.117 39.130 5.02 5.02 41.15 3.67
1111 1531 5.060506 TCAATTCAACGAAGAGCTTGGTTA 58.939 37.500 9.72 0.00 39.02 2.85
1112 1532 5.179368 TCAATTCAACGAAGAGCTTGGTTAG 59.821 40.000 9.72 6.00 39.02 2.34
1121 1541 3.239861 GCTTGGTTAGCTGCTCACT 57.760 52.632 4.91 0.00 46.77 3.41
1124 1544 2.869192 GCTTGGTTAGCTGCTCACTATC 59.131 50.000 4.91 0.00 46.77 2.08
1125 1545 2.871182 TGGTTAGCTGCTCACTATCG 57.129 50.000 4.91 0.00 0.00 2.92
1126 1546 1.409064 TGGTTAGCTGCTCACTATCGG 59.591 52.381 4.91 0.00 0.00 4.18
1127 1547 1.409427 GGTTAGCTGCTCACTATCGGT 59.591 52.381 4.91 0.00 0.00 4.69
1128 1548 2.544069 GGTTAGCTGCTCACTATCGGTC 60.544 54.545 4.91 0.00 0.00 4.79
1129 1549 1.319541 TAGCTGCTCACTATCGGTCC 58.680 55.000 4.91 0.00 0.00 4.46
1130 1550 1.068250 GCTGCTCACTATCGGTCCC 59.932 63.158 0.00 0.00 0.00 4.46
1131 1551 1.676678 GCTGCTCACTATCGGTCCCA 61.677 60.000 0.00 0.00 0.00 4.37
1132 1552 1.043816 CTGCTCACTATCGGTCCCAT 58.956 55.000 0.00 0.00 0.00 4.00
1133 1553 0.752658 TGCTCACTATCGGTCCCATG 59.247 55.000 0.00 0.00 0.00 3.66
1134 1554 0.034059 GCTCACTATCGGTCCCATGG 59.966 60.000 4.14 4.14 0.00 3.66
1135 1555 1.414158 CTCACTATCGGTCCCATGGT 58.586 55.000 11.73 0.00 0.00 3.55
1136 1556 1.069204 CTCACTATCGGTCCCATGGTG 59.931 57.143 11.73 6.63 34.81 4.17
1137 1557 1.119684 CACTATCGGTCCCATGGTGA 58.880 55.000 11.73 4.83 35.33 4.02
1138 1558 1.694150 CACTATCGGTCCCATGGTGAT 59.306 52.381 11.73 10.61 35.33 3.06
1266 1686 2.205462 ACCTCCCTCTGCCACACT 59.795 61.111 0.00 0.00 0.00 3.55
1321 1745 3.122150 CGCTCACGTCCAAAGATCA 57.878 52.632 0.00 0.00 33.53 2.92
1322 1746 0.716108 CGCTCACGTCCAAAGATCAC 59.284 55.000 0.00 0.00 33.53 3.06
1340 1764 4.421033 TCACTCAGTTAGAAGCAGTACG 57.579 45.455 0.00 0.00 0.00 3.67
1341 1765 3.819337 TCACTCAGTTAGAAGCAGTACGT 59.181 43.478 0.00 0.00 0.00 3.57
1350 1774 1.385743 GAAGCAGTACGTGTACTTGCG 59.614 52.381 9.88 1.40 43.35 4.85
1397 1821 2.291043 GGAAGACTTCCCGCTCCCA 61.291 63.158 21.88 0.00 44.30 4.37
1416 1840 1.077716 CCCGTGTTCCCAAGGATCC 60.078 63.158 2.48 2.48 42.22 3.36
1461 1885 2.108566 CTCAGATCCTGCTGCCGG 59.891 66.667 3.41 3.41 35.86 6.13
1506 1930 1.226101 GACGACGACGGCGAATGTA 60.226 57.895 32.70 0.00 44.46 2.29
1519 1943 5.642063 ACGGCGAATGTATTATAAGATTGGG 59.358 40.000 16.62 0.00 0.00 4.12
1891 2316 1.973812 GGGCCTGCCTCACAAAGAC 60.974 63.158 8.29 0.00 36.10 3.01
1902 2327 5.835819 TGCCTCACAAAGACTATCTAGCTAT 59.164 40.000 0.00 0.00 0.00 2.97
2084 2521 0.321475 GCTGCTGCTTCTCCTTCTGT 60.321 55.000 8.53 0.00 36.03 3.41
2090 2527 4.456911 TGCTGCTTCTCCTTCTGTTAAATG 59.543 41.667 0.00 0.00 0.00 2.32
2132 2569 2.092103 AGTTGGTTGGTGCTGAAACCTA 60.092 45.455 13.67 6.01 45.12 3.08
2137 2574 2.254546 TGGTGCTGAAACCTACTGTG 57.745 50.000 0.00 0.00 41.16 3.66
2305 2754 7.852945 GGTTGATTTCAAAATGCTATCTACTCG 59.147 37.037 0.00 0.00 37.63 4.18
2348 2797 2.489971 GTGACAGATTTCGTGAACCCA 58.510 47.619 0.00 0.00 0.00 4.51
2387 2836 1.902508 CCACTCAGCCAGGTAAGAAGA 59.097 52.381 0.00 0.00 0.00 2.87
2397 2846 5.007682 GCCAGGTAAGAAGAATTTGGTACA 58.992 41.667 0.00 0.00 0.00 2.90
2412 2861 3.561143 TGGTACAAGGACAGCACAAAAT 58.439 40.909 0.00 0.00 31.92 1.82
2413 2862 4.720046 TGGTACAAGGACAGCACAAAATA 58.280 39.130 0.00 0.00 31.92 1.40
2414 2863 4.517453 TGGTACAAGGACAGCACAAAATAC 59.483 41.667 0.00 0.00 31.92 1.89
2415 2864 3.896648 ACAAGGACAGCACAAAATACG 57.103 42.857 0.00 0.00 0.00 3.06
2416 2865 2.031157 ACAAGGACAGCACAAAATACGC 60.031 45.455 0.00 0.00 0.00 4.42
2417 2866 1.890876 AGGACAGCACAAAATACGCA 58.109 45.000 0.00 0.00 0.00 5.24
2418 2867 2.436417 AGGACAGCACAAAATACGCAT 58.564 42.857 0.00 0.00 0.00 4.73
2419 2868 2.420022 AGGACAGCACAAAATACGCATC 59.580 45.455 0.00 0.00 0.00 3.91
2422 2871 3.073678 ACAGCACAAAATACGCATCTGA 58.926 40.909 0.00 0.00 0.00 3.27
2423 2872 3.501828 ACAGCACAAAATACGCATCTGAA 59.498 39.130 0.00 0.00 0.00 3.02
2424 2873 4.156556 ACAGCACAAAATACGCATCTGAAT 59.843 37.500 0.00 0.00 0.00 2.57
2587 3053 1.826024 CGCTAAGCAGGTCCTCCAT 59.174 57.895 0.00 0.00 35.89 3.41
2588 3054 0.249657 CGCTAAGCAGGTCCTCCATC 60.250 60.000 0.00 0.00 35.89 3.51
2592 3058 0.985490 AAGCAGGTCCTCCATCTCCC 60.985 60.000 0.00 0.00 35.89 4.30
2599 3065 1.616327 CCTCCATCTCCCACCACCA 60.616 63.158 0.00 0.00 0.00 4.17
2600 3066 1.604378 CTCCATCTCCCACCACCAC 59.396 63.158 0.00 0.00 0.00 4.16
2602 3068 2.230653 CCATCTCCCACCACCACCA 61.231 63.158 0.00 0.00 0.00 4.17
2603 3069 1.002134 CATCTCCCACCACCACCAC 60.002 63.158 0.00 0.00 0.00 4.16
2604 3070 1.463214 ATCTCCCACCACCACCACA 60.463 57.895 0.00 0.00 0.00 4.17
2605 3071 1.065410 ATCTCCCACCACCACCACAA 61.065 55.000 0.00 0.00 0.00 3.33
2606 3072 1.065410 TCTCCCACCACCACCACAAT 61.065 55.000 0.00 0.00 0.00 2.71
2609 3075 0.678950 CCCACCACCACCACAATTTC 59.321 55.000 0.00 0.00 0.00 2.17
2610 3076 0.313672 CCACCACCACCACAATTTCG 59.686 55.000 0.00 0.00 0.00 3.46
2611 3077 0.318614 CACCACCACCACAATTTCGC 60.319 55.000 0.00 0.00 0.00 4.70
2612 3078 0.467290 ACCACCACCACAATTTCGCT 60.467 50.000 0.00 0.00 0.00 4.93
2613 3079 1.202830 ACCACCACCACAATTTCGCTA 60.203 47.619 0.00 0.00 0.00 4.26
2614 3080 1.883275 CCACCACCACAATTTCGCTAA 59.117 47.619 0.00 0.00 0.00 3.09
2615 3081 2.351350 CCACCACCACAATTTCGCTAAC 60.351 50.000 0.00 0.00 0.00 2.34
2616 3082 1.883926 ACCACCACAATTTCGCTAACC 59.116 47.619 0.00 0.00 0.00 2.85
2617 3083 1.201414 CCACCACAATTTCGCTAACCC 59.799 52.381 0.00 0.00 0.00 4.11
2618 3084 1.135803 CACCACAATTTCGCTAACCCG 60.136 52.381 0.00 0.00 0.00 5.28
2619 3085 0.179174 CCACAATTTCGCTAACCCGC 60.179 55.000 0.00 0.00 0.00 6.13
2620 3086 0.519519 CACAATTTCGCTAACCCGCA 59.480 50.000 0.00 0.00 0.00 5.69
2621 3087 1.132262 CACAATTTCGCTAACCCGCAT 59.868 47.619 0.00 0.00 0.00 4.73
2622 3088 1.400494 ACAATTTCGCTAACCCGCATC 59.600 47.619 0.00 0.00 0.00 3.91
2623 3089 0.655733 AATTTCGCTAACCCGCATCG 59.344 50.000 0.00 0.00 0.00 3.84
2624 3090 0.461339 ATTTCGCTAACCCGCATCGT 60.461 50.000 0.00 0.00 0.00 3.73
2625 3091 1.079875 TTTCGCTAACCCGCATCGTC 61.080 55.000 0.00 0.00 0.00 4.20
2626 3092 3.320078 CGCTAACCCGCATCGTCG 61.320 66.667 0.00 0.00 0.00 5.12
2627 3093 2.103538 GCTAACCCGCATCGTCGA 59.896 61.111 0.00 0.00 0.00 4.20
2628 3094 1.299926 GCTAACCCGCATCGTCGAT 60.300 57.895 0.75 0.75 0.00 3.59
2629 3095 0.874607 GCTAACCCGCATCGTCGATT 60.875 55.000 4.63 0.00 0.00 3.34
2630 3096 1.567504 CTAACCCGCATCGTCGATTT 58.432 50.000 4.63 0.00 0.00 2.17
2631 3097 1.931172 CTAACCCGCATCGTCGATTTT 59.069 47.619 4.63 0.00 0.00 1.82
2654 3120 3.466836 GATGAGAACACGGCCATTCATA 58.533 45.455 2.24 0.00 0.00 2.15
2656 3122 3.205338 TGAGAACACGGCCATTCATATG 58.795 45.455 2.24 0.00 0.00 1.78
2657 3123 3.206150 GAGAACACGGCCATTCATATGT 58.794 45.455 2.24 0.00 0.00 2.29
2658 3124 3.620488 AGAACACGGCCATTCATATGTT 58.380 40.909 2.24 0.88 33.15 2.71
2662 3128 1.405105 ACGGCCATTCATATGTTGTGC 59.595 47.619 2.24 7.65 0.00 4.57
2666 3132 3.489738 GGCCATTCATATGTTGTGCTGTC 60.490 47.826 0.00 0.00 0.00 3.51
2704 3173 2.670148 AAGACGGTGATCCTGGGGC 61.670 63.158 0.00 0.00 0.00 5.80
2808 3277 0.400213 TCAAGCCCAAGACCGACATT 59.600 50.000 0.00 0.00 0.00 2.71
2821 3290 1.441729 GACATTCCGATCCTCGCCA 59.558 57.895 0.00 0.00 38.82 5.69
2834 3303 1.065102 CCTCGCCAAGAAATGCATGAG 59.935 52.381 0.00 0.00 0.00 2.90
2910 3379 1.194772 CGAGTTCGGGAGCTGAAAAAC 59.805 52.381 0.00 0.00 35.37 2.43
2913 3382 1.070108 GTTCGGGAGCTGAAAAACGTC 60.070 52.381 0.00 0.00 30.01 4.34
2966 3435 0.457509 AGAAGCTGATCACGCACGAG 60.458 55.000 16.20 0.00 0.00 4.18
3052 3521 2.103771 TCATCTGGATGGACAAGCTAGC 59.896 50.000 6.62 6.62 39.24 3.42
3064 3533 4.434876 GCTAGCGGCGTGAAAAAC 57.565 55.556 9.37 0.00 0.00 2.43
3071 3540 1.374125 GGCGTGAAAAACCATGGGC 60.374 57.895 18.09 6.75 0.00 5.36
3133 3604 5.669164 AAAACTGTTGCTTGTTTCCCTAA 57.331 34.783 0.00 0.00 35.63 2.69
3134 3605 5.869649 AAACTGTTGCTTGTTTCCCTAAT 57.130 34.783 0.00 0.00 31.65 1.73
3162 3633 8.491331 AAAATTGTTGCTTGTGTTTATTCACT 57.509 26.923 0.00 0.00 38.90 3.41
3163 3634 7.467557 AATTGTTGCTTGTGTTTATTCACTG 57.532 32.000 0.00 0.00 38.90 3.66
3203 3674 0.736636 CTACGTGGCTATCGTGACCA 59.263 55.000 0.00 0.00 41.62 4.02
3219 3690 1.377725 CCAGACGCTTTGCCATCCT 60.378 57.895 0.00 0.00 0.00 3.24
3224 3695 0.250901 ACGCTTTGCCATCCTGTTCT 60.251 50.000 0.00 0.00 0.00 3.01
3239 3710 1.957877 TGTTCTTTTTAACCCTGGCCG 59.042 47.619 0.00 0.00 0.00 6.13
3265 3736 5.107913 CGTGAATAATTGTGTGCTTGTTTGG 60.108 40.000 0.00 0.00 0.00 3.28
3284 3755 2.740668 GCATGGTTGCCATTGTTCG 58.259 52.632 0.00 0.00 42.23 3.95
3285 3756 0.737019 GCATGGTTGCCATTGTTCGG 60.737 55.000 0.00 0.00 42.23 4.30
3286 3757 0.602562 CATGGTTGCCATTGTTCGGT 59.397 50.000 0.00 0.00 42.23 4.69
3289 3760 0.387565 GGTTGCCATTGTTCGGTTGT 59.612 50.000 0.00 0.00 0.00 3.32
3290 3761 1.601914 GGTTGCCATTGTTCGGTTGTC 60.602 52.381 0.00 0.00 0.00 3.18
3294 3776 1.606668 GCCATTGTTCGGTTGTCAAGA 59.393 47.619 0.00 0.00 0.00 3.02
3295 3777 2.034053 GCCATTGTTCGGTTGTCAAGAA 59.966 45.455 0.00 0.00 0.00 2.52
3308 3790 6.426937 CGGTTGTCAAGAAGAAGATTTAAGGA 59.573 38.462 0.00 0.00 0.00 3.36
3309 3791 7.041372 CGGTTGTCAAGAAGAAGATTTAAGGAA 60.041 37.037 0.00 0.00 0.00 3.36
3313 3795 9.184523 TGTCAAGAAGAAGATTTAAGGAACAAA 57.815 29.630 0.00 0.00 0.00 2.83
3348 3832 2.833794 ACGCAACGCATACCATATCTT 58.166 42.857 0.00 0.00 0.00 2.40
3352 3836 6.160684 ACGCAACGCATACCATATCTTTATA 58.839 36.000 0.00 0.00 0.00 0.98
3353 3837 6.310467 ACGCAACGCATACCATATCTTTATAG 59.690 38.462 0.00 0.00 0.00 1.31
3354 3838 6.530181 CGCAACGCATACCATATCTTTATAGA 59.470 38.462 0.00 0.00 34.21 1.98
3355 3839 7.062956 CGCAACGCATACCATATCTTTATAGAA 59.937 37.037 0.00 0.00 33.20 2.10
3374 7597 5.346181 AGAATACCAGAAAGCTACCACTC 57.654 43.478 0.00 0.00 0.00 3.51
3383 7606 1.323412 AGCTACCACTCGCTAGGATG 58.677 55.000 0.00 0.00 34.11 3.51
3393 7616 4.512944 CACTCGCTAGGATGCATAAAACAT 59.487 41.667 0.00 0.00 0.00 2.71
3394 7617 5.696270 CACTCGCTAGGATGCATAAAACATA 59.304 40.000 0.00 0.00 0.00 2.29
3395 7618 6.369890 CACTCGCTAGGATGCATAAAACATAT 59.630 38.462 0.00 0.00 0.00 1.78
3435 7658 8.175716 CCAGACTTTTGAATTTAGAATACCGAC 58.824 37.037 0.00 0.00 0.00 4.79
3438 7661 8.617290 ACTTTTGAATTTAGAATACCGACAGT 57.383 30.769 0.00 0.00 0.00 3.55
3439 7662 9.063615 ACTTTTGAATTTAGAATACCGACAGTT 57.936 29.630 0.00 0.00 0.00 3.16
3448 7671 8.610248 TTAGAATACCGACAGTTCAAATTTCA 57.390 30.769 0.00 0.00 0.00 2.69
3449 7672 7.133891 AGAATACCGACAGTTCAAATTTCAG 57.866 36.000 0.00 0.00 0.00 3.02
3451 7674 7.607991 AGAATACCGACAGTTCAAATTTCAGAT 59.392 33.333 0.00 0.00 0.00 2.90
3456 7679 7.222611 ACCGACAGTTCAAATTTCAGATTTTTG 59.777 33.333 0.00 0.00 0.00 2.44
3700 7939 1.066454 TGACAAGAAGAACGAGCGTGA 59.934 47.619 0.00 0.00 0.00 4.35
3704 7943 0.660595 AGAAGAACGAGCGTGACACG 60.661 55.000 23.43 23.43 45.88 4.49
3706 7945 0.248743 AAGAACGAGCGTGACACGAA 60.249 50.000 31.08 0.00 46.05 3.85
3717 7956 0.526739 TGACACGAACACCACACTCG 60.527 55.000 0.00 0.00 38.53 4.18
3730 7969 1.003851 ACACTCGAACAAACACCACG 58.996 50.000 0.00 0.00 0.00 4.94
3757 7996 2.548057 TCAAGCTACAACGCAAAAGAGG 59.452 45.455 0.00 0.00 0.00 3.69
3790 8029 0.249531 ATACACAACACCGCGTCACA 60.250 50.000 4.92 0.00 0.00 3.58
3792 8031 1.299562 ACACAACACCGCGTCACAAA 61.300 50.000 4.92 0.00 0.00 2.83
3793 8032 0.859788 CACAACACCGCGTCACAAAC 60.860 55.000 4.92 0.00 0.00 2.93
3802 8041 2.935955 GTCACAAACGACGCCAGG 59.064 61.111 0.00 0.00 0.00 4.45
3818 8057 2.047179 GGCACCTCCGAAGACCAC 60.047 66.667 0.00 0.00 0.00 4.16
3833 8072 5.552178 GAAGACCACCAACTTCTACAGAAT 58.448 41.667 0.00 0.00 39.25 2.40
3838 8077 4.755123 CCACCAACTTCTACAGAATTTCGT 59.245 41.667 0.00 0.00 33.01 3.85
3846 8085 7.407337 ACTTCTACAGAATTTCGTTTGTCAAC 58.593 34.615 0.00 0.00 33.01 3.18
3859 8098 1.745232 TGTCAACGCATTATCCACCC 58.255 50.000 0.00 0.00 0.00 4.61
3862 8101 1.280710 TCAACGCATTATCCACCCTGT 59.719 47.619 0.00 0.00 0.00 4.00
3864 8103 2.612212 CAACGCATTATCCACCCTGTAC 59.388 50.000 0.00 0.00 0.00 2.90
3866 8105 1.226746 GCATTATCCACCCTGTACGC 58.773 55.000 0.00 0.00 0.00 4.42
3889 8128 5.743117 CCTGAGAGAAAGTGGAAGATGAAT 58.257 41.667 0.00 0.00 0.00 2.57
3891 8130 5.494724 TGAGAGAAAGTGGAAGATGAATGG 58.505 41.667 0.00 0.00 0.00 3.16
3920 8159 2.657143 GGTCCGATCTAGGAAGACACT 58.343 52.381 0.00 0.00 42.77 3.55
3921 8160 2.359531 GGTCCGATCTAGGAAGACACTG 59.640 54.545 0.00 0.00 42.77 3.66
3944 8183 2.654877 GACACACCGACGATGGGT 59.345 61.111 0.00 0.00 36.03 4.51
3955 8195 2.470821 GACGATGGGTGTACATAGTGC 58.529 52.381 0.00 0.00 36.93 4.40
3957 8197 1.865865 GATGGGTGTACATAGTGCCG 58.134 55.000 0.00 0.00 0.00 5.69
3960 8200 1.881252 GGTGTACATAGTGCCGCGG 60.881 63.158 24.05 24.05 0.00 6.46
3961 8201 1.140161 GTGTACATAGTGCCGCGGA 59.860 57.895 33.48 11.82 0.00 5.54
3977 8217 1.740025 GCGGAGGATCAAAAAGGACAG 59.260 52.381 0.00 0.00 36.25 3.51
3979 8219 1.740025 GGAGGATCAAAAAGGACAGCG 59.260 52.381 0.00 0.00 36.25 5.18
3992 8232 0.594796 GACAGCGGCAAACACCAAAG 60.595 55.000 1.45 0.00 0.00 2.77
4011 8251 0.179051 GGAGAGCAATGAGGAGCCAG 60.179 60.000 0.00 0.00 0.00 4.85
4030 8270 0.039527 GTTGTGCCGATCCAAACACC 60.040 55.000 0.00 0.00 31.98 4.16
4031 8271 0.466372 TTGTGCCGATCCAAACACCA 60.466 50.000 0.00 0.00 31.98 4.17
4035 8275 2.490115 GTGCCGATCCAAACACCAAATA 59.510 45.455 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 2.675772 TGCCATGAATGCGGTGCA 60.676 55.556 0.00 0.00 44.86 4.57
46 47 2.202650 GTGCCATGAATGCGGTGC 60.203 61.111 0.00 0.00 0.00 5.01
47 48 2.341875 TGGTGCCATGAATGCGGTG 61.342 57.895 0.00 0.00 0.00 4.94
105 106 4.789075 TGCCGCCTTCGTCTACGC 62.789 66.667 0.00 0.00 39.60 4.42
147 151 1.068474 GTCATGTCACACGTGGCTAC 58.932 55.000 21.57 14.57 36.81 3.58
196 200 5.935789 GCGTAGTACTCCTAGATCTGAATCT 59.064 44.000 5.18 0.00 44.57 2.40
197 201 5.935789 AGCGTAGTACTCCTAGATCTGAATC 59.064 44.000 5.18 0.00 0.00 2.52
198 202 5.871834 AGCGTAGTACTCCTAGATCTGAAT 58.128 41.667 5.18 0.00 0.00 2.57
199 203 5.293319 AGCGTAGTACTCCTAGATCTGAA 57.707 43.478 5.18 0.00 0.00 3.02
200 204 4.559099 CGAGCGTAGTACTCCTAGATCTGA 60.559 50.000 5.18 0.00 0.00 3.27
202 206 3.861886 GCGAGCGTAGTACTCCTAGATCT 60.862 52.174 0.00 0.00 0.00 2.75
203 207 2.412770 GCGAGCGTAGTACTCCTAGATC 59.587 54.545 0.00 0.00 0.00 2.75
204 208 2.037511 AGCGAGCGTAGTACTCCTAGAT 59.962 50.000 0.00 0.00 0.00 1.98
205 209 1.411977 AGCGAGCGTAGTACTCCTAGA 59.588 52.381 0.00 0.00 0.00 2.43
206 210 1.868469 AGCGAGCGTAGTACTCCTAG 58.132 55.000 0.00 0.00 0.00 3.02
207 211 2.322355 AAGCGAGCGTAGTACTCCTA 57.678 50.000 0.00 0.00 0.00 2.94
208 212 1.461559 AAAGCGAGCGTAGTACTCCT 58.538 50.000 0.00 0.00 0.00 3.69
209 213 2.096496 TGTAAAGCGAGCGTAGTACTCC 59.904 50.000 0.00 0.00 0.00 3.85
210 214 3.097185 GTGTAAAGCGAGCGTAGTACTC 58.903 50.000 0.00 0.00 0.00 2.59
211 215 2.485426 TGTGTAAAGCGAGCGTAGTACT 59.515 45.455 0.00 0.00 0.00 2.73
212 216 2.855180 TGTGTAAAGCGAGCGTAGTAC 58.145 47.619 0.00 0.00 0.00 2.73
214 218 2.259618 CATGTGTAAAGCGAGCGTAGT 58.740 47.619 0.00 0.00 0.00 2.73
218 227 0.374758 ATGCATGTGTAAAGCGAGCG 59.625 50.000 0.00 0.00 0.00 5.03
237 247 4.838152 GCGCCCTTCATCGGCTCA 62.838 66.667 0.00 0.00 44.73 4.26
238 248 4.838152 TGCGCCCTTCATCGGCTC 62.838 66.667 4.18 0.00 44.73 4.70
241 251 3.499737 GTGTGCGCCCTTCATCGG 61.500 66.667 4.18 0.00 0.00 4.18
243 253 0.387239 GTTTGTGTGCGCCCTTCATC 60.387 55.000 4.18 0.00 0.00 2.92
249 259 1.153745 TTTGTGTTTGTGTGCGCCC 60.154 52.632 4.18 0.00 0.00 6.13
253 263 1.835365 CGTACGTTTGTGTTTGTGTGC 59.165 47.619 7.22 0.00 0.00 4.57
281 295 2.817423 GCCAGCATACGCAGACAGC 61.817 63.158 0.00 0.00 42.27 4.40
305 319 2.904434 AGTACTTACTGAACCCCACAGG 59.096 50.000 0.00 0.00 39.38 4.00
317 331 4.221041 GGAGTGGAAGAAGCAGTACTTACT 59.779 45.833 0.00 0.00 39.29 2.24
318 332 4.021368 TGGAGTGGAAGAAGCAGTACTTAC 60.021 45.833 0.00 0.00 39.29 2.34
319 333 4.021368 GTGGAGTGGAAGAAGCAGTACTTA 60.021 45.833 0.00 0.00 39.29 2.24
320 334 2.972713 TGGAGTGGAAGAAGCAGTACTT 59.027 45.455 0.00 0.00 42.98 2.24
321 335 2.300437 GTGGAGTGGAAGAAGCAGTACT 59.700 50.000 0.00 0.00 0.00 2.73
322 336 2.300437 AGTGGAGTGGAAGAAGCAGTAC 59.700 50.000 0.00 0.00 0.00 2.73
323 337 2.563179 GAGTGGAGTGGAAGAAGCAGTA 59.437 50.000 0.00 0.00 0.00 2.74
347 361 5.468746 CGGGTCTCAAGATAAAAAGACACAA 59.531 40.000 4.68 0.00 41.28 3.33
348 362 4.994852 CGGGTCTCAAGATAAAAAGACACA 59.005 41.667 4.68 0.00 41.28 3.72
349 363 4.392138 CCGGGTCTCAAGATAAAAAGACAC 59.608 45.833 0.00 0.00 39.90 3.67
355 369 1.631388 TGCCCGGGTCTCAAGATAAAA 59.369 47.619 24.63 0.00 0.00 1.52
356 370 1.281419 TGCCCGGGTCTCAAGATAAA 58.719 50.000 24.63 0.00 0.00 1.40
357 371 1.281419 TTGCCCGGGTCTCAAGATAA 58.719 50.000 24.63 0.00 0.00 1.75
358 372 1.281419 TTTGCCCGGGTCTCAAGATA 58.719 50.000 24.63 0.00 0.00 1.98
360 374 0.183971 TTTTTGCCCGGGTCTCAAGA 59.816 50.000 24.63 10.44 0.00 3.02
361 375 2.727103 TTTTTGCCCGGGTCTCAAG 58.273 52.632 24.63 0.00 0.00 3.02
382 396 2.900122 TACTGGCGAACGTACTACAC 57.100 50.000 0.00 0.00 0.00 2.90
383 397 3.913548 TTTACTGGCGAACGTACTACA 57.086 42.857 0.00 0.00 0.00 2.74
384 398 5.053025 CGTAATTTACTGGCGAACGTACTAC 60.053 44.000 5.11 0.00 0.00 2.73
385 399 5.027737 CGTAATTTACTGGCGAACGTACTA 58.972 41.667 5.11 0.00 0.00 1.82
386 400 3.853671 CGTAATTTACTGGCGAACGTACT 59.146 43.478 5.11 0.00 0.00 2.73
387 401 3.608073 ACGTAATTTACTGGCGAACGTAC 59.392 43.478 5.11 0.00 39.98 3.67
388 402 3.832276 ACGTAATTTACTGGCGAACGTA 58.168 40.909 5.11 0.00 39.98 3.57
389 403 2.676076 ACGTAATTTACTGGCGAACGT 58.324 42.857 5.11 0.00 37.28 3.99
390 404 4.317558 CCATACGTAATTTACTGGCGAACG 60.318 45.833 0.00 0.00 35.17 3.95
391 405 4.567959 ACCATACGTAATTTACTGGCGAAC 59.432 41.667 9.95 0.00 0.00 3.95
392 406 4.757594 ACCATACGTAATTTACTGGCGAA 58.242 39.130 9.95 0.00 0.00 4.70
393 407 4.389890 ACCATACGTAATTTACTGGCGA 57.610 40.909 9.95 0.00 0.00 5.54
394 408 5.042593 TGTACCATACGTAATTTACTGGCG 58.957 41.667 9.95 0.00 0.00 5.69
406 420 8.229253 TCTGAATATAAGTGTGTACCATACGT 57.771 34.615 0.00 0.00 30.87 3.57
407 421 8.350722 ACTCTGAATATAAGTGTGTACCATACG 58.649 37.037 0.00 0.00 30.87 3.06
410 424 8.361139 GCTACTCTGAATATAAGTGTGTACCAT 58.639 37.037 0.00 0.00 0.00 3.55
411 425 7.340999 TGCTACTCTGAATATAAGTGTGTACCA 59.659 37.037 0.00 0.00 0.00 3.25
412 426 7.713750 TGCTACTCTGAATATAAGTGTGTACC 58.286 38.462 0.00 0.00 0.00 3.34
416 430 9.926751 CAAAATGCTACTCTGAATATAAGTGTG 57.073 33.333 4.22 0.00 0.00 3.82
417 431 9.890629 TCAAAATGCTACTCTGAATATAAGTGT 57.109 29.630 0.00 0.45 0.00 3.55
421 435 8.830580 GCACTCAAAATGCTACTCTGAATATAA 58.169 33.333 0.00 0.00 40.08 0.98
422 436 7.986889 TGCACTCAAAATGCTACTCTGAATATA 59.013 33.333 0.00 0.00 43.77 0.86
423 437 6.825213 TGCACTCAAAATGCTACTCTGAATAT 59.175 34.615 0.00 0.00 43.77 1.28
425 439 5.005740 TGCACTCAAAATGCTACTCTGAAT 58.994 37.500 0.00 0.00 43.77 2.57
427 441 4.006780 TGCACTCAAAATGCTACTCTGA 57.993 40.909 0.00 0.00 43.77 3.27
428 442 4.959596 ATGCACTCAAAATGCTACTCTG 57.040 40.909 0.00 0.00 43.77 3.35
429 443 5.982356 TCTATGCACTCAAAATGCTACTCT 58.018 37.500 0.00 0.00 43.77 3.24
431 445 9.429359 GTATATCTATGCACTCAAAATGCTACT 57.571 33.333 0.00 0.00 43.77 2.57
432 446 9.429359 AGTATATCTATGCACTCAAAATGCTAC 57.571 33.333 0.00 0.00 43.77 3.58
434 448 8.781196 CAAGTATATCTATGCACTCAAAATGCT 58.219 33.333 0.00 0.00 43.77 3.79
435 449 7.536622 GCAAGTATATCTATGCACTCAAAATGC 59.463 37.037 0.00 0.00 43.68 3.56
436 450 8.562052 TGCAAGTATATCTATGCACTCAAAATG 58.438 33.333 0.00 0.00 43.32 2.32
457 511 9.539825 AGAAGTATCATCAAGTATTAGTGCAAG 57.460 33.333 0.00 0.00 0.00 4.01
473 527 2.158652 TCGTCCTCCGGAGAAGTATCAT 60.159 50.000 33.39 0.00 37.11 2.45
474 528 1.211212 TCGTCCTCCGGAGAAGTATCA 59.789 52.381 33.39 6.66 37.11 2.15
475 529 1.874872 CTCGTCCTCCGGAGAAGTATC 59.125 57.143 33.39 13.80 37.11 2.24
476 530 1.970092 CTCGTCCTCCGGAGAAGTAT 58.030 55.000 33.39 0.00 37.11 2.12
477 531 0.747283 GCTCGTCCTCCGGAGAAGTA 60.747 60.000 33.39 13.99 37.11 2.24
478 532 2.047443 GCTCGTCCTCCGGAGAAGT 61.047 63.158 33.39 0.00 37.11 3.01
479 533 2.046864 TGCTCGTCCTCCGGAGAAG 61.047 63.158 33.39 22.35 37.11 2.85
481 535 2.750637 GTGCTCGTCCTCCGGAGA 60.751 66.667 33.39 15.91 37.11 3.71
482 536 3.827898 GGTGCTCGTCCTCCGGAG 61.828 72.222 25.36 25.36 37.11 4.63
502 717 0.953471 ATAAGAGGCAAACGCGCACA 60.953 50.000 5.73 0.00 0.00 4.57
503 718 0.247695 GATAAGAGGCAAACGCGCAC 60.248 55.000 5.73 0.00 0.00 5.34
504 719 0.391130 AGATAAGAGGCAAACGCGCA 60.391 50.000 5.73 0.00 0.00 6.09
505 720 0.727398 AAGATAAGAGGCAAACGCGC 59.273 50.000 5.73 0.00 0.00 6.86
506 721 2.271800 AGAAGATAAGAGGCAAACGCG 58.728 47.619 3.53 3.53 0.00 6.01
509 729 8.956533 AGAAGATAAGAAGATAAGAGGCAAAC 57.043 34.615 0.00 0.00 0.00 2.93
539 885 0.744414 CAATGGAGGAACGGCGACAT 60.744 55.000 16.62 4.56 0.00 3.06
540 886 1.375396 CAATGGAGGAACGGCGACA 60.375 57.895 16.62 2.64 0.00 4.35
551 897 4.848357 AGGTCCTTGTAACATCAATGGAG 58.152 43.478 0.00 0.00 31.07 3.86
553 899 4.848357 AGAGGTCCTTGTAACATCAATGG 58.152 43.478 0.00 0.00 30.11 3.16
555 901 5.491982 GTGAGAGGTCCTTGTAACATCAAT 58.508 41.667 0.00 0.00 30.11 2.57
558 904 3.260884 TGGTGAGAGGTCCTTGTAACATC 59.739 47.826 0.00 0.00 0.00 3.06
561 907 3.665190 CTTGGTGAGAGGTCCTTGTAAC 58.335 50.000 0.00 0.00 0.00 2.50
562 908 2.038557 GCTTGGTGAGAGGTCCTTGTAA 59.961 50.000 0.00 0.00 0.00 2.41
563 909 1.623811 GCTTGGTGAGAGGTCCTTGTA 59.376 52.381 0.00 0.00 0.00 2.41
564 910 0.398318 GCTTGGTGAGAGGTCCTTGT 59.602 55.000 0.00 0.00 0.00 3.16
565 911 0.397941 TGCTTGGTGAGAGGTCCTTG 59.602 55.000 0.00 0.00 0.00 3.61
566 912 0.398318 GTGCTTGGTGAGAGGTCCTT 59.602 55.000 0.00 0.00 0.00 3.36
567 913 0.472734 AGTGCTTGGTGAGAGGTCCT 60.473 55.000 0.00 0.00 0.00 3.85
568 914 0.321122 CAGTGCTTGGTGAGAGGTCC 60.321 60.000 0.00 0.00 0.00 4.46
572 923 1.233285 GGCACAGTGCTTGGTGAGAG 61.233 60.000 24.75 0.00 44.28 3.20
574 925 2.263741 GGGCACAGTGCTTGGTGAG 61.264 63.158 24.75 0.00 44.28 3.51
638 989 2.299993 TAAGCATGAAGGAGACTGCG 57.700 50.000 0.00 0.00 39.80 5.18
643 994 2.184533 TCCCGTTAAGCATGAAGGAGA 58.815 47.619 0.00 0.00 0.00 3.71
651 1002 1.353022 TCCAACCTTCCCGTTAAGCAT 59.647 47.619 0.00 0.00 0.00 3.79
679 1030 6.752351 ACATCGAGACATACAGTGTTAATCAC 59.248 38.462 0.00 0.00 42.36 3.06
680 1031 6.751888 CACATCGAGACATACAGTGTTAATCA 59.248 38.462 0.00 0.00 42.36 2.57
683 1034 5.047590 ACCACATCGAGACATACAGTGTTAA 60.048 40.000 0.00 0.00 42.36 2.01
685 1036 3.258372 ACCACATCGAGACATACAGTGTT 59.742 43.478 0.00 0.00 42.36 3.32
687 1038 3.510388 ACCACATCGAGACATACAGTG 57.490 47.619 0.00 0.00 0.00 3.66
688 1039 4.014406 TGTACCACATCGAGACATACAGT 58.986 43.478 0.00 0.00 0.00 3.55
689 1040 4.335594 TCTGTACCACATCGAGACATACAG 59.664 45.833 15.31 15.31 39.46 2.74
690 1041 4.266714 TCTGTACCACATCGAGACATACA 58.733 43.478 0.00 0.00 0.00 2.29
691 1042 4.895224 TCTGTACCACATCGAGACATAC 57.105 45.455 0.00 0.00 0.00 2.39
692 1043 6.096282 TGAATTCTGTACCACATCGAGACATA 59.904 38.462 7.05 0.00 0.00 2.29
693 1044 5.105351 TGAATTCTGTACCACATCGAGACAT 60.105 40.000 7.05 0.00 0.00 3.06
694 1045 4.219725 TGAATTCTGTACCACATCGAGACA 59.780 41.667 7.05 0.00 0.00 3.41
708 1059 2.568623 AAAGGCCGTCTGAATTCTGT 57.431 45.000 7.05 0.00 0.00 3.41
735 1086 3.432749 CCCGTCATCATCCAACAGAAGAT 60.433 47.826 0.00 0.00 33.17 2.40
737 1088 2.283298 CCCGTCATCATCCAACAGAAG 58.717 52.381 0.00 0.00 0.00 2.85
780 1131 2.762459 TATGCTCTTCGGCCCCGT 60.762 61.111 6.61 0.00 40.74 5.28
781 1132 2.029666 CTATGCTCTTCGGCCCCG 59.970 66.667 0.00 0.00 41.35 5.73
785 1136 0.387202 TCTGCTCTATGCTCTTCGGC 59.613 55.000 0.00 0.00 43.37 5.54
787 1138 2.098934 ACACTCTGCTCTATGCTCTTCG 59.901 50.000 0.00 0.00 43.37 3.79
788 1139 3.799281 ACACTCTGCTCTATGCTCTTC 57.201 47.619 0.00 0.00 43.37 2.87
789 1140 5.867903 ATTACACTCTGCTCTATGCTCTT 57.132 39.130 0.00 0.00 43.37 2.85
791 1142 6.640499 CAGTTATTACACTCTGCTCTATGCTC 59.360 42.308 0.00 0.00 43.37 4.26
792 1143 6.322456 TCAGTTATTACACTCTGCTCTATGCT 59.678 38.462 0.00 0.00 43.37 3.79
793 1144 6.507900 TCAGTTATTACACTCTGCTCTATGC 58.492 40.000 0.00 0.00 43.25 3.14
794 1145 9.539825 AATTCAGTTATTACACTCTGCTCTATG 57.460 33.333 0.00 0.00 0.00 2.23
795 1146 9.757227 GAATTCAGTTATTACACTCTGCTCTAT 57.243 33.333 0.00 0.00 0.00 1.98
796 1147 7.915923 CGAATTCAGTTATTACACTCTGCTCTA 59.084 37.037 6.22 0.00 0.00 2.43
798 1149 6.019479 CCGAATTCAGTTATTACACTCTGCTC 60.019 42.308 6.22 0.00 0.00 4.26
801 1152 5.276395 CGCCGAATTCAGTTATTACACTCTG 60.276 44.000 6.22 0.00 0.00 3.35
802 1153 4.804139 CGCCGAATTCAGTTATTACACTCT 59.196 41.667 6.22 0.00 0.00 3.24
803 1154 4.802039 TCGCCGAATTCAGTTATTACACTC 59.198 41.667 6.22 0.00 0.00 3.51
804 1155 4.565564 GTCGCCGAATTCAGTTATTACACT 59.434 41.667 6.22 0.00 0.00 3.55
806 1157 3.548668 CGTCGCCGAATTCAGTTATTACA 59.451 43.478 6.22 0.00 35.63 2.41
807 1158 3.060740 CCGTCGCCGAATTCAGTTATTAC 60.061 47.826 6.22 0.00 35.63 1.89
823 1222 1.154225 CAAAATGGACAGCCGTCGC 60.154 57.895 0.00 0.00 43.61 5.19
824 1223 1.062587 GATCAAAATGGACAGCCGTCG 59.937 52.381 0.00 0.00 43.61 5.12
825 1224 1.401905 GGATCAAAATGGACAGCCGTC 59.598 52.381 0.00 0.00 41.80 4.79
832 1231 1.173043 TGCGGTGGATCAAAATGGAC 58.827 50.000 0.00 0.00 0.00 4.02
902 1306 4.275196 GTCACGAGCCAGAGTGTATATACA 59.725 45.833 11.62 11.62 39.25 2.29
903 1307 4.515944 AGTCACGAGCCAGAGTGTATATAC 59.484 45.833 5.89 5.89 39.25 1.47
904 1308 4.715713 AGTCACGAGCCAGAGTGTATATA 58.284 43.478 0.00 0.00 39.25 0.86
905 1309 3.556999 AGTCACGAGCCAGAGTGTATAT 58.443 45.455 0.00 0.00 39.25 0.86
906 1310 2.943690 GAGTCACGAGCCAGAGTGTATA 59.056 50.000 0.00 0.00 39.25 1.47
914 1318 1.214062 GGTCTGAGTCACGAGCCAG 59.786 63.158 9.36 0.00 0.00 4.85
915 1319 0.827925 AAGGTCTGAGTCACGAGCCA 60.828 55.000 14.28 0.00 0.00 4.75
923 1327 0.109039 GACGGAGCAAGGTCTGAGTC 60.109 60.000 14.44 10.12 0.00 3.36
946 1352 3.011257 AGAGGAGCTCTTGGAGAAGTACT 59.989 47.826 14.64 0.00 37.60 2.73
953 1359 1.521616 GCCAGAGGAGCTCTTGGAG 59.478 63.158 26.14 11.36 38.99 3.86
1041 1450 2.471818 CATGCATGAAGAGTCTCGGAG 58.528 52.381 22.59 0.00 0.00 4.63
1044 1457 1.859703 GAGCATGCATGAAGAGTCTCG 59.140 52.381 30.64 0.00 0.00 4.04
1065 1478 5.966742 AGCAAAGAAAAATAGGACAGGTC 57.033 39.130 0.00 0.00 0.00 3.85
1071 1484 9.260002 GTTGAATTGAAGCAAAGAAAAATAGGA 57.740 29.630 0.00 0.00 0.00 2.94
1085 1505 3.820777 AGCTCTTCGTTGAATTGAAGC 57.179 42.857 5.56 0.00 41.05 3.86
1107 1527 1.409427 ACCGATAGTGAGCAGCTAACC 59.591 52.381 6.25 0.00 0.00 2.85
1108 1528 2.544069 GGACCGATAGTGAGCAGCTAAC 60.544 54.545 0.80 0.80 0.00 2.34
1110 1530 1.319541 GGACCGATAGTGAGCAGCTA 58.680 55.000 0.00 0.00 0.00 3.32
1111 1531 1.395826 GGGACCGATAGTGAGCAGCT 61.396 60.000 0.00 0.00 0.00 4.24
1112 1532 1.068250 GGGACCGATAGTGAGCAGC 59.932 63.158 0.00 0.00 0.00 5.25
1113 1533 1.043816 ATGGGACCGATAGTGAGCAG 58.956 55.000 0.00 0.00 0.00 4.24
1115 1535 0.034059 CCATGGGACCGATAGTGAGC 59.966 60.000 2.85 0.00 0.00 4.26
1117 1537 1.119684 CACCATGGGACCGATAGTGA 58.880 55.000 18.09 0.00 0.00 3.41
1120 1540 1.609061 GCATCACCATGGGACCGATAG 60.609 57.143 18.09 8.25 0.00 2.08
1121 1541 0.396435 GCATCACCATGGGACCGATA 59.604 55.000 18.09 0.00 0.00 2.92
1124 1544 2.516930 GGCATCACCATGGGACCG 60.517 66.667 18.09 6.87 38.86 4.79
1125 1545 2.682846 TGGCATCACCATGGGACC 59.317 61.111 18.09 10.05 46.36 4.46
1221 1641 1.338337 ACCTTCATGCGGATCTCGTAG 59.662 52.381 7.74 0.00 41.72 3.51
1320 1744 3.914966 CACGTACTGCTTCTAACTGAGTG 59.085 47.826 0.00 0.00 0.00 3.51
1321 1745 3.568853 ACACGTACTGCTTCTAACTGAGT 59.431 43.478 0.00 0.00 0.00 3.41
1322 1746 4.162096 ACACGTACTGCTTCTAACTGAG 57.838 45.455 0.00 0.00 0.00 3.35
1340 1764 3.542704 CGTATCTGAGTTCGCAAGTACAC 59.457 47.826 0.00 0.00 40.44 2.90
1341 1765 3.189910 ACGTATCTGAGTTCGCAAGTACA 59.810 43.478 0.00 0.00 40.44 2.90
1350 1774 4.871993 TCGGAAGTACGTATCTGAGTTC 57.128 45.455 0.00 0.00 34.94 3.01
1482 1906 4.790861 GCCGTCGTCGTCCCTTCC 62.791 72.222 0.71 0.00 35.01 3.46
1506 1930 3.149196 CAGCACCGCCCAATCTTATAAT 58.851 45.455 0.00 0.00 0.00 1.28
1873 2298 1.973812 GTCTTTGTGAGGCAGGCCC 60.974 63.158 6.70 0.00 36.58 5.80
1874 2299 0.324943 TAGTCTTTGTGAGGCAGGCC 59.675 55.000 0.97 0.97 30.26 5.19
1875 2300 2.093235 AGATAGTCTTTGTGAGGCAGGC 60.093 50.000 0.00 0.00 30.26 4.85
1876 2301 3.902881 AGATAGTCTTTGTGAGGCAGG 57.097 47.619 0.00 0.00 30.26 4.85
1902 2327 8.134202 TCTTTACTCCATCATTCTTACAGTGA 57.866 34.615 0.00 0.00 0.00 3.41
2003 2428 1.141881 CCCGAAGATGACCACCGAG 59.858 63.158 0.00 0.00 0.00 4.63
2084 2521 4.834534 TCTACTAACCGCTTGCCATTTAA 58.165 39.130 0.00 0.00 0.00 1.52
2090 2527 3.267483 TGAAATCTACTAACCGCTTGCC 58.733 45.455 0.00 0.00 0.00 4.52
2132 2569 2.495669 CCACCCAAAAGTTGTTCACAGT 59.504 45.455 0.00 0.00 0.00 3.55
2137 2574 2.100749 CCTGACCACCCAAAAGTTGTTC 59.899 50.000 0.00 0.00 0.00 3.18
2348 2797 2.755929 GCTCTCGCCGAGTTTTGAT 58.244 52.632 14.64 0.00 41.98 2.57
2387 2836 3.561143 TGTGCTGTCCTTGTACCAAATT 58.439 40.909 0.00 0.00 0.00 1.82
2397 2846 2.226330 TGCGTATTTTGTGCTGTCCTT 58.774 42.857 0.00 0.00 0.00 3.36
2401 2850 3.073678 TCAGATGCGTATTTTGTGCTGT 58.926 40.909 0.00 0.00 0.00 4.40
2405 2854 6.545508 TCAGAATTCAGATGCGTATTTTGTG 58.454 36.000 8.44 0.00 0.00 3.33
2412 2861 3.131046 TGAGCTCAGAATTCAGATGCGTA 59.869 43.478 13.74 3.67 0.00 4.42
2413 2862 2.093816 TGAGCTCAGAATTCAGATGCGT 60.094 45.455 13.74 2.29 0.00 5.24
2414 2863 2.547826 TGAGCTCAGAATTCAGATGCG 58.452 47.619 13.74 0.00 0.00 4.73
2415 2864 3.242349 CGTTGAGCTCAGAATTCAGATGC 60.242 47.826 17.43 10.45 0.00 3.91
2416 2865 3.309138 CCGTTGAGCTCAGAATTCAGATG 59.691 47.826 17.43 4.81 0.00 2.90
2417 2866 3.196469 TCCGTTGAGCTCAGAATTCAGAT 59.804 43.478 17.43 0.00 0.00 2.90
2418 2867 2.562738 TCCGTTGAGCTCAGAATTCAGA 59.437 45.455 17.43 4.12 0.00 3.27
2419 2868 2.964740 TCCGTTGAGCTCAGAATTCAG 58.035 47.619 17.43 0.00 0.00 3.02
2422 2871 2.012673 GCATCCGTTGAGCTCAGAATT 58.987 47.619 17.43 0.00 0.00 2.17
2423 2872 1.209019 AGCATCCGTTGAGCTCAGAAT 59.791 47.619 17.43 6.46 32.05 2.40
2424 2873 0.610174 AGCATCCGTTGAGCTCAGAA 59.390 50.000 17.43 0.00 32.05 3.02
2451 2917 6.002062 AGTTAAGAAGCAAAATGAGAACGG 57.998 37.500 0.00 0.00 0.00 4.44
2536 3002 2.126618 GTCATGACGGACGCGACA 60.127 61.111 15.93 5.11 0.00 4.35
2538 3004 4.470170 CGGTCATGACGGACGCGA 62.470 66.667 24.81 0.00 38.70 5.87
2587 3053 1.065410 ATTGTGGTGGTGGTGGGAGA 61.065 55.000 0.00 0.00 0.00 3.71
2588 3054 0.178964 AATTGTGGTGGTGGTGGGAG 60.179 55.000 0.00 0.00 0.00 4.30
2592 3058 0.318614 GCGAAATTGTGGTGGTGGTG 60.319 55.000 0.00 0.00 0.00 4.17
2599 3065 1.161843 CGGGTTAGCGAAATTGTGGT 58.838 50.000 0.00 0.00 0.00 4.16
2600 3066 0.179174 GCGGGTTAGCGAAATTGTGG 60.179 55.000 0.00 0.00 0.00 4.17
2602 3068 1.400494 GATGCGGGTTAGCGAAATTGT 59.600 47.619 0.00 0.00 40.67 2.71
2603 3069 1.594518 CGATGCGGGTTAGCGAAATTG 60.595 52.381 0.00 0.00 40.67 2.32
2604 3070 0.655733 CGATGCGGGTTAGCGAAATT 59.344 50.000 0.00 0.00 40.67 1.82
2605 3071 0.461339 ACGATGCGGGTTAGCGAAAT 60.461 50.000 0.00 0.00 40.67 2.17
2606 3072 1.079681 ACGATGCGGGTTAGCGAAA 60.080 52.632 0.00 0.00 40.67 3.46
2609 3075 3.320078 CGACGATGCGGGTTAGCG 61.320 66.667 0.00 0.00 40.67 4.26
2610 3076 0.874607 AATCGACGATGCGGGTTAGC 60.875 55.000 11.83 0.00 37.71 3.09
2611 3077 1.567504 AAATCGACGATGCGGGTTAG 58.432 50.000 11.83 0.00 0.00 2.34
2612 3078 1.928503 GAAAATCGACGATGCGGGTTA 59.071 47.619 11.83 0.00 0.00 2.85
2613 3079 0.725117 GAAAATCGACGATGCGGGTT 59.275 50.000 11.83 0.00 0.00 4.11
2614 3080 1.418342 CGAAAATCGACGATGCGGGT 61.418 55.000 11.83 0.00 43.74 5.28
2615 3081 1.143373 TCGAAAATCGACGATGCGGG 61.143 55.000 11.83 2.20 44.82 6.13
2616 3082 2.284203 TCGAAAATCGACGATGCGG 58.716 52.632 11.83 1.84 44.82 5.69
2625 3091 2.534939 GCCGTGTTCTCATCGAAAATCG 60.535 50.000 0.00 0.00 42.10 3.34
2626 3092 2.223044 GGCCGTGTTCTCATCGAAAATC 60.223 50.000 0.00 0.00 32.41 2.17
2627 3093 1.737793 GGCCGTGTTCTCATCGAAAAT 59.262 47.619 0.00 0.00 32.41 1.82
2628 3094 1.153353 GGCCGTGTTCTCATCGAAAA 58.847 50.000 0.00 0.00 32.41 2.29
2629 3095 0.034198 TGGCCGTGTTCTCATCGAAA 59.966 50.000 0.00 0.00 32.41 3.46
2630 3096 0.249120 ATGGCCGTGTTCTCATCGAA 59.751 50.000 0.00 0.00 0.00 3.71
2631 3097 0.249120 AATGGCCGTGTTCTCATCGA 59.751 50.000 0.00 0.00 0.00 3.59
2636 3102 3.206150 ACATATGAATGGCCGTGTTCTC 58.794 45.455 10.38 0.00 37.43 2.87
2638 3104 3.128589 ACAACATATGAATGGCCGTGTTC 59.871 43.478 10.38 3.07 37.43 3.18
2654 3120 1.311859 CCACACAGACAGCACAACAT 58.688 50.000 0.00 0.00 0.00 2.71
2656 3122 1.356624 GCCACACAGACAGCACAAC 59.643 57.895 0.00 0.00 0.00 3.32
2657 3123 1.077858 TGCCACACAGACAGCACAA 60.078 52.632 0.00 0.00 0.00 3.33
2658 3124 2.588989 TGCCACACAGACAGCACA 59.411 55.556 0.00 0.00 0.00 4.57
2666 3132 1.679977 CCATTCCCCTGCCACACAG 60.680 63.158 0.00 0.00 46.77 3.66
2704 3173 1.219393 GCTTCCCGTCCTTCTCCAG 59.781 63.158 0.00 0.00 0.00 3.86
2834 3303 6.634837 CGAGATATCATATCATACGACCTTGC 59.365 42.308 7.43 0.00 0.00 4.01
2842 3311 7.918033 CAGAACCCACGAGATATCATATCATAC 59.082 40.741 7.43 0.00 0.00 2.39
2910 3379 2.414559 GCATCCATCCACACAAAAGACG 60.415 50.000 0.00 0.00 0.00 4.18
2913 3382 2.094390 CCTGCATCCATCCACACAAAAG 60.094 50.000 0.00 0.00 0.00 2.27
2966 3435 1.635817 TTATCTCCTGCAGGCCCACC 61.636 60.000 28.91 0.00 34.44 4.61
3050 3519 1.285641 CATGGTTTTTCACGCCGCT 59.714 52.632 0.00 0.00 0.00 5.52
3052 3521 1.080839 CCCATGGTTTTTCACGCCG 60.081 57.895 11.73 0.00 0.00 6.46
3061 3530 1.001860 CCAACATTTCGCCCATGGTTT 59.998 47.619 11.73 0.00 0.00 3.27
3064 3533 0.173255 GACCAACATTTCGCCCATGG 59.827 55.000 4.14 4.14 0.00 3.66
3071 3540 0.609131 AGCCCTGGACCAACATTTCG 60.609 55.000 0.00 0.00 0.00 3.46
3100 3571 2.505866 CAACAGTTTTATTCGCTCGCC 58.494 47.619 0.00 0.00 0.00 5.54
3105 3576 5.332280 GGAAACAAGCAACAGTTTTATTCGC 60.332 40.000 0.00 0.00 38.01 4.70
3162 3633 3.411446 CTTCCATGTTCTAGCAACACCA 58.589 45.455 9.11 0.00 32.37 4.17
3163 3634 2.162408 GCTTCCATGTTCTAGCAACACC 59.838 50.000 9.11 0.00 33.88 4.16
3203 3674 0.250901 AACAGGATGGCAAAGCGTCT 60.251 50.000 0.00 0.00 43.62 4.18
3219 3690 1.957877 CGGCCAGGGTTAAAAAGAACA 59.042 47.619 2.24 0.00 0.00 3.18
3224 3695 0.179023 ACGACGGCCAGGGTTAAAAA 60.179 50.000 2.24 0.00 0.00 1.94
3239 3710 4.783242 ACAAGCACACAATTATTCACGAC 58.217 39.130 0.00 0.00 0.00 4.34
3279 3750 4.131649 TCTTCTTCTTGACAACCGAACA 57.868 40.909 0.00 0.00 0.00 3.18
3280 3751 5.674933 AATCTTCTTCTTGACAACCGAAC 57.325 39.130 0.00 0.00 0.00 3.95
3281 3752 7.041372 CCTTAAATCTTCTTCTTGACAACCGAA 60.041 37.037 0.00 0.00 0.00 4.30
3282 3753 6.426937 CCTTAAATCTTCTTCTTGACAACCGA 59.573 38.462 0.00 0.00 0.00 4.69
3283 3754 6.426937 TCCTTAAATCTTCTTCTTGACAACCG 59.573 38.462 0.00 0.00 0.00 4.44
3284 3755 7.745620 TCCTTAAATCTTCTTCTTGACAACC 57.254 36.000 0.00 0.00 0.00 3.77
3285 3756 8.621286 TGTTCCTTAAATCTTCTTCTTGACAAC 58.379 33.333 0.00 0.00 0.00 3.32
3286 3757 8.746052 TGTTCCTTAAATCTTCTTCTTGACAA 57.254 30.769 0.00 0.00 0.00 3.18
3322 3804 6.647481 AGATATGGTATGCGTTGCGTATTTAA 59.353 34.615 0.00 0.00 33.75 1.52
3323 3805 6.160684 AGATATGGTATGCGTTGCGTATTTA 58.839 36.000 0.00 0.00 33.75 1.40
3325 3807 4.566004 AGATATGGTATGCGTTGCGTATT 58.434 39.130 0.00 0.00 33.75 1.89
3327 3809 3.653539 AGATATGGTATGCGTTGCGTA 57.346 42.857 0.00 0.00 0.00 4.42
3328 3810 2.526304 AGATATGGTATGCGTTGCGT 57.474 45.000 0.00 0.00 0.00 5.24
3329 3811 3.878086 AAAGATATGGTATGCGTTGCG 57.122 42.857 0.00 0.00 0.00 4.85
3330 3812 7.827819 TCTATAAAGATATGGTATGCGTTGC 57.172 36.000 0.00 0.00 0.00 4.17
3348 3832 8.548880 AGTGGTAGCTTTCTGGTATTCTATAA 57.451 34.615 0.00 0.00 0.00 0.98
3352 3836 4.142138 CGAGTGGTAGCTTTCTGGTATTCT 60.142 45.833 0.00 0.00 0.00 2.40
3353 3837 4.113354 CGAGTGGTAGCTTTCTGGTATTC 58.887 47.826 0.00 0.00 0.00 1.75
3354 3838 3.679083 GCGAGTGGTAGCTTTCTGGTATT 60.679 47.826 0.00 0.00 0.00 1.89
3355 3839 2.159085 GCGAGTGGTAGCTTTCTGGTAT 60.159 50.000 0.00 0.00 0.00 2.73
3359 7582 2.480416 CCTAGCGAGTGGTAGCTTTCTG 60.480 54.545 0.00 0.00 43.34 3.02
3366 7589 1.032794 TGCATCCTAGCGAGTGGTAG 58.967 55.000 0.00 0.00 44.10 3.18
3374 7597 8.801715 AAAAATATGTTTTATGCATCCTAGCG 57.198 30.769 0.19 0.00 36.55 4.26
3410 7633 8.717821 TGTCGGTATTCTAAATTCAAAAGTCTG 58.282 33.333 0.00 0.00 0.00 3.51
3432 7655 8.118893 ACAAAAATCTGAAATTTGAACTGTCG 57.881 30.769 19.16 0.00 37.46 4.35
3447 7670 8.600449 TTTTGCAGGGTTATAACAAAAATCTG 57.400 30.769 17.16 13.27 37.30 2.90
3536 7759 7.338800 ACTAAGAGTTGGCCATTCATAAATG 57.661 36.000 6.09 0.00 41.69 2.32
3543 7766 4.636206 CCTTGTACTAAGAGTTGGCCATTC 59.364 45.833 6.09 8.10 0.00 2.67
3631 7869 8.840321 CATCCTACAATTTCATTACGGAATTCT 58.160 33.333 5.23 0.00 0.00 2.40
3700 7939 0.173935 TTCGAGTGTGGTGTTCGTGT 59.826 50.000 0.00 0.00 35.90 4.49
3704 7943 2.417239 TGTTTGTTCGAGTGTGGTGTTC 59.583 45.455 0.00 0.00 0.00 3.18
3706 7945 1.735571 GTGTTTGTTCGAGTGTGGTGT 59.264 47.619 0.00 0.00 0.00 4.16
3717 7956 4.022464 TGATTTGACGTGGTGTTTGTTC 57.978 40.909 0.00 0.00 0.00 3.18
3730 7969 3.536158 TGCGTTGTAGCTTGATTTGAC 57.464 42.857 0.00 0.00 38.13 3.18
3757 7996 5.463724 GTGTTGTGTATCAGCTTAGGATAGC 59.536 44.000 0.00 0.00 41.53 2.97
3790 8029 4.250305 AGGTGCCTGGCGTCGTTT 62.250 61.111 14.98 0.00 0.00 3.60
3802 8041 2.047179 GGTGGTCTTCGGAGGTGC 60.047 66.667 0.00 0.00 0.00 5.01
3818 8057 6.725246 ACAAACGAAATTCTGTAGAAGTTGG 58.275 36.000 11.49 12.27 41.62 3.77
3838 8077 2.490115 GGGTGGATAATGCGTTGACAAA 59.510 45.455 0.08 0.00 0.00 2.83
3846 8085 1.497991 CGTACAGGGTGGATAATGCG 58.502 55.000 0.00 0.00 0.00 4.73
3850 8089 0.828022 CAGGCGTACAGGGTGGATAA 59.172 55.000 0.00 0.00 0.00 1.75
3855 8094 0.965866 TCTCTCAGGCGTACAGGGTG 60.966 60.000 0.00 0.00 0.00 4.61
3859 8098 2.600731 CACTTTCTCTCAGGCGTACAG 58.399 52.381 0.00 0.00 0.00 2.74
3862 8101 1.919240 TCCACTTTCTCTCAGGCGTA 58.081 50.000 0.00 0.00 0.00 4.42
3864 8103 1.273606 TCTTCCACTTTCTCTCAGGCG 59.726 52.381 0.00 0.00 0.00 5.52
3866 8105 4.815533 TCATCTTCCACTTTCTCTCAGG 57.184 45.455 0.00 0.00 0.00 3.86
3920 8159 1.066752 CGTCGGTGTGTCCAAGACA 59.933 57.895 0.00 0.00 40.50 3.41
3921 8160 0.038526 ATCGTCGGTGTGTCCAAGAC 60.039 55.000 0.00 0.00 35.57 3.01
3944 8183 1.435925 CTCCGCGGCACTATGTACA 59.564 57.895 23.51 0.00 0.00 2.90
3955 8195 0.392461 TCCTTTTTGATCCTCCGCGG 60.392 55.000 22.12 22.12 0.00 6.46
3957 8197 1.740025 CTGTCCTTTTTGATCCTCCGC 59.260 52.381 0.00 0.00 0.00 5.54
3960 8200 1.740025 CCGCTGTCCTTTTTGATCCTC 59.260 52.381 0.00 0.00 0.00 3.71
3961 8201 1.826385 CCGCTGTCCTTTTTGATCCT 58.174 50.000 0.00 0.00 0.00 3.24
3977 8217 1.007387 CTCCTTTGGTGTTTGCCGC 60.007 57.895 0.00 0.00 0.00 6.53
3979 8219 0.315251 GCTCTCCTTTGGTGTTTGCC 59.685 55.000 0.00 0.00 0.00 4.52
3992 8232 0.179051 CTGGCTCCTCATTGCTCTCC 60.179 60.000 0.00 0.00 0.00 3.71
4011 8251 0.039527 GGTGTTTGGATCGGCACAAC 60.040 55.000 8.89 0.94 33.88 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.