Multiple sequence alignment - TraesCS4D01G303200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G303200 chr4D 100.000 2596 0 0 1 2596 471230387 471227792 0.000000e+00 4795.0
1 TraesCS4D01G303200 chr4D 88.748 1422 94 21 1075 2464 471216799 471215412 0.000000e+00 1679.0
2 TraesCS4D01G303200 chr4D 83.385 963 65 42 800 1706 471261876 471260953 0.000000e+00 804.0
3 TraesCS4D01G303200 chr4D 85.604 646 72 13 1075 1708 471212666 471212030 0.000000e+00 658.0
4 TraesCS4D01G303200 chr4D 83.752 597 44 30 894 1454 470857027 470856448 1.380000e-142 516.0
5 TraesCS4D01G303200 chr4D 83.573 487 65 12 1 480 339455559 339456037 2.370000e-120 442.0
6 TraesCS4D01G303200 chr4D 78.947 665 106 25 1 641 403300178 403300832 3.090000e-114 422.0
7 TraesCS4D01G303200 chr4D 78.443 668 119 19 1 649 324201047 324201708 1.860000e-111 412.0
8 TraesCS4D01G303200 chr4D 78.374 652 111 25 1 641 8133759 8133127 1.870000e-106 396.0
9 TraesCS4D01G303200 chr4D 84.018 438 40 11 1049 1481 471153997 471153585 6.730000e-106 394.0
10 TraesCS4D01G303200 chr4D 84.810 158 23 1 1874 2030 471211849 471211692 9.620000e-35 158.0
11 TraesCS4D01G303200 chr4D 76.923 195 36 7 453 641 8941577 8941386 4.570000e-18 102.0
12 TraesCS4D01G303200 chr4D 90.541 74 6 1 397 469 23340165 23340092 2.130000e-16 97.1
13 TraesCS4D01G303200 chr4B 90.265 1736 80 25 776 2464 593200666 593198973 0.000000e+00 2187.0
14 TraesCS4D01G303200 chr4B 82.486 1239 110 53 798 1954 593343028 593341815 0.000000e+00 987.0
15 TraesCS4D01G303200 chr4B 82.317 820 101 29 894 1692 593156199 593155403 0.000000e+00 671.0
16 TraesCS4D01G303200 chr4B 91.169 419 35 1 1075 1491 593197694 593197276 3.750000e-158 568.0
17 TraesCS4D01G303200 chr4B 84.066 546 60 8 1075 1610 593135973 593135445 3.860000e-138 501.0
18 TraesCS4D01G303200 chr4B 78.740 762 109 31 1 758 593214294 593213582 6.550000e-126 460.0
19 TraesCS4D01G303200 chr4B 88.654 379 31 4 1076 1454 593116735 593116369 3.940000e-123 451.0
20 TraesCS4D01G303200 chr4B 85.912 362 39 8 2054 2407 593341282 593340925 2.440000e-100 375.0
21 TraesCS4D01G303200 chr4B 78.833 600 77 29 1877 2464 593196407 593195846 2.460000e-95 359.0
22 TraesCS4D01G303200 chr4A 85.089 1234 91 48 798 1978 678376876 678375683 0.000000e+00 1173.0
23 TraesCS4D01G303200 chr4A 86.059 954 52 28 800 1708 678405231 678404314 0.000000e+00 950.0
24 TraesCS4D01G303200 chr4A 83.751 837 94 26 898 1699 678373965 678373136 0.000000e+00 754.0
25 TraesCS4D01G303200 chr4A 83.689 515 55 17 1961 2464 678375664 678375168 2.350000e-125 459.0
26 TraesCS4D01G303200 chr4A 81.883 563 46 36 925 1460 678341112 678340579 8.590000e-115 424.0
27 TraesCS4D01G303200 chr4A 85.287 401 51 8 2066 2464 678384862 678384468 8.650000e-110 407.0
28 TraesCS4D01G303200 chr4A 85.897 156 21 1 1876 2030 678372934 678372779 5.750000e-37 165.0
29 TraesCS4D01G303200 chr4A 86.275 102 14 0 445 546 550463688 550463789 7.590000e-21 111.0
30 TraesCS4D01G303200 chr4A 100.000 31 0 0 737 767 678405357 678405327 1.000000e-04 58.4
31 TraesCS4D01G303200 chr7A 80.993 584 99 11 1 575 252191718 252192298 1.100000e-123 453.0
32 TraesCS4D01G303200 chr3D 79.846 650 106 17 1 641 550250244 550250877 3.940000e-123 451.0
33 TraesCS4D01G303200 chr3D 80.546 586 97 12 1 580 169793209 169793783 3.970000e-118 435.0
34 TraesCS4D01G303200 chr3D 76.994 652 120 23 1 641 576318660 576319292 1.910000e-91 346.0
35 TraesCS4D01G303200 chr3D 86.260 131 17 1 2467 2596 121320357 121320487 9.690000e-30 141.0
36 TraesCS4D01G303200 chr1A 81.076 539 83 13 1 533 464944186 464944711 1.860000e-111 412.0
37 TraesCS4D01G303200 chr1B 80.443 542 90 12 1 533 684343005 684342471 1.450000e-107 399.0
38 TraesCS4D01G303200 chr2B 85.053 281 37 5 1 279 727232237 727231960 5.470000e-72 281.0
39 TraesCS4D01G303200 chr2B 79.221 154 31 1 398 551 163430076 163430228 3.530000e-19 106.0
40 TraesCS4D01G303200 chr2B 81.609 87 14 2 509 594 777300384 777300469 1.290000e-08 71.3
41 TraesCS4D01G303200 chr5A 74.958 591 116 22 1 584 481682882 481682317 2.580000e-60 243.0
42 TraesCS4D01G303200 chr5B 90.000 130 13 0 2467 2596 416015307 416015436 4.440000e-38 169.0
43 TraesCS4D01G303200 chr6D 78.218 202 38 6 441 641 386895315 386895119 9.750000e-25 124.0
44 TraesCS4D01G303200 chr6D 82.353 136 24 0 445 580 82562245 82562380 4.540000e-23 119.0
45 TraesCS4D01G303200 chr7B 77.368 190 38 5 408 595 74484351 74484165 9.820000e-20 108.0
46 TraesCS4D01G303200 chr2D 75.566 221 44 10 2126 2339 189855005 189854788 1.640000e-17 100.0
47 TraesCS4D01G303200 chr6A 89.474 76 8 0 397 472 189886673 189886748 2.130000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G303200 chr4D 471227792 471230387 2595 True 4795.000000 4795 100.000000 1 2596 1 chr4D.!!$R6 2595
1 TraesCS4D01G303200 chr4D 471211692 471216799 5107 True 831.666667 1679 86.387333 1075 2464 3 chr4D.!!$R8 1389
2 TraesCS4D01G303200 chr4D 471260953 471261876 923 True 804.000000 804 83.385000 800 1706 1 chr4D.!!$R7 906
3 TraesCS4D01G303200 chr4D 470856448 470857027 579 True 516.000000 516 83.752000 894 1454 1 chr4D.!!$R4 560
4 TraesCS4D01G303200 chr4D 403300178 403300832 654 False 422.000000 422 78.947000 1 641 1 chr4D.!!$F3 640
5 TraesCS4D01G303200 chr4D 324201047 324201708 661 False 412.000000 412 78.443000 1 649 1 chr4D.!!$F1 648
6 TraesCS4D01G303200 chr4D 8133127 8133759 632 True 396.000000 396 78.374000 1 641 1 chr4D.!!$R1 640
7 TraesCS4D01G303200 chr4B 593195846 593200666 4820 True 1038.000000 2187 86.755667 776 2464 3 chr4B.!!$R5 1688
8 TraesCS4D01G303200 chr4B 593340925 593343028 2103 True 681.000000 987 84.199000 798 2407 2 chr4B.!!$R6 1609
9 TraesCS4D01G303200 chr4B 593155403 593156199 796 True 671.000000 671 82.317000 894 1692 1 chr4B.!!$R3 798
10 TraesCS4D01G303200 chr4B 593135445 593135973 528 True 501.000000 501 84.066000 1075 1610 1 chr4B.!!$R2 535
11 TraesCS4D01G303200 chr4B 593213582 593214294 712 True 460.000000 460 78.740000 1 758 1 chr4B.!!$R4 757
12 TraesCS4D01G303200 chr4A 678372779 678376876 4097 True 637.750000 1173 84.606500 798 2464 4 chr4A.!!$R3 1666
13 TraesCS4D01G303200 chr4A 678404314 678405357 1043 True 504.200000 950 93.029500 737 1708 2 chr4A.!!$R4 971
14 TraesCS4D01G303200 chr4A 678340579 678341112 533 True 424.000000 424 81.883000 925 1460 1 chr4A.!!$R1 535
15 TraesCS4D01G303200 chr7A 252191718 252192298 580 False 453.000000 453 80.993000 1 575 1 chr7A.!!$F1 574
16 TraesCS4D01G303200 chr3D 550250244 550250877 633 False 451.000000 451 79.846000 1 641 1 chr3D.!!$F3 640
17 TraesCS4D01G303200 chr3D 169793209 169793783 574 False 435.000000 435 80.546000 1 580 1 chr3D.!!$F2 579
18 TraesCS4D01G303200 chr3D 576318660 576319292 632 False 346.000000 346 76.994000 1 641 1 chr3D.!!$F4 640
19 TraesCS4D01G303200 chr1A 464944186 464944711 525 False 412.000000 412 81.076000 1 533 1 chr1A.!!$F1 532
20 TraesCS4D01G303200 chr1B 684342471 684343005 534 True 399.000000 399 80.443000 1 533 1 chr1B.!!$R1 532
21 TraesCS4D01G303200 chr5A 481682317 481682882 565 True 243.000000 243 74.958000 1 584 1 chr5A.!!$R1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 161 0.178068 TTGAGCCGACCTTATGGAGC 59.822 55.0 0.81 1.77 37.04 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2061 9878 2.10175 TGGAGAAGCGGCGAATATACAA 59.898 45.455 12.98 0.0 0.0 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 137 2.683465 GCCCCAGAGGATCCAAGCA 61.683 63.158 15.82 0.00 38.24 3.91
145 153 2.579201 CATCCGTTGAGCCGACCT 59.421 61.111 0.00 0.00 0.00 3.85
153 161 0.178068 TTGAGCCGACCTTATGGAGC 59.822 55.000 0.81 1.77 37.04 4.70
267 276 2.093106 AGATGACACCCTAGTCGACAC 58.907 52.381 19.50 0.00 41.41 3.67
349 361 1.756538 CAAAGTTGAGCTTGGGTGGTT 59.243 47.619 0.00 0.00 37.52 3.67
354 366 0.843309 TGAGCTTGGGTGGTTGAAGA 59.157 50.000 0.00 0.00 0.00 2.87
355 367 1.425066 TGAGCTTGGGTGGTTGAAGAT 59.575 47.619 0.00 0.00 0.00 2.40
357 369 0.804989 GCTTGGGTGGTTGAAGATCG 59.195 55.000 0.00 0.00 0.00 3.69
358 370 0.804989 CTTGGGTGGTTGAAGATCGC 59.195 55.000 0.00 0.00 0.00 4.58
359 371 0.608035 TTGGGTGGTTGAAGATCGCC 60.608 55.000 0.00 0.00 0.00 5.54
361 373 0.608035 GGGTGGTTGAAGATCGCCAA 60.608 55.000 0.00 0.00 32.26 4.52
364 376 1.880027 GTGGTTGAAGATCGCCAAAGT 59.120 47.619 4.73 0.00 32.26 2.66
366 378 2.293122 TGGTTGAAGATCGCCAAAGTTG 59.707 45.455 4.73 0.00 0.00 3.16
367 379 2.552315 GGTTGAAGATCGCCAAAGTTGA 59.448 45.455 4.73 0.00 0.00 3.18
369 381 1.806542 TGAAGATCGCCAAAGTTGAGC 59.193 47.619 0.00 0.00 0.00 4.26
370 382 2.079925 GAAGATCGCCAAAGTTGAGCT 58.920 47.619 0.00 0.00 0.00 4.09
371 383 2.191128 AGATCGCCAAAGTTGAGCTT 57.809 45.000 0.00 0.00 39.52 3.74
388 400 3.436056 TTGGGTGGTGGAGGGGAGT 62.436 63.158 0.00 0.00 0.00 3.85
391 431 1.846124 GGTGGTGGAGGGGAGTGAA 60.846 63.158 0.00 0.00 0.00 3.18
393 433 1.128188 GTGGTGGAGGGGAGTGAAGT 61.128 60.000 0.00 0.00 0.00 3.01
394 434 0.401395 TGGTGGAGGGGAGTGAAGTT 60.401 55.000 0.00 0.00 0.00 2.66
425 466 2.505819 AGGAATATATGTGGGATCGGGC 59.494 50.000 0.00 0.00 0.00 6.13
484 548 2.542907 GGCGTGCCCATATCAACCG 61.543 63.158 0.00 0.00 0.00 4.44
502 566 5.761165 AACCGCATATTTGGGTTGTATAC 57.239 39.130 7.79 0.00 42.23 1.47
541 605 0.603439 GGGCGTTTGAGACCCGTTTA 60.603 55.000 0.00 0.00 32.92 2.01
547 611 1.886886 TTGAGACCCGTTTAAGGCAC 58.113 50.000 0.00 0.00 0.00 5.01
552 616 0.536460 ACCCGTTTAAGGCACCTGTG 60.536 55.000 0.00 0.00 0.00 3.66
580 644 4.882427 TCAAAATTTTGTGACCGGTCAGTA 59.118 37.500 37.04 25.37 40.75 2.74
584 648 9.700024 CAAAATTTTGTGACCGGTCAGTAACCA 62.700 40.741 37.04 26.63 40.75 3.67
600 664 2.362369 CCAGGCAGTCCGTCCAGAT 61.362 63.158 0.00 0.00 37.47 2.90
607 671 3.531538 GCAGTCCGTCCAGATATTTGAA 58.468 45.455 0.00 0.00 0.00 2.69
609 673 4.759782 CAGTCCGTCCAGATATTTGAAGT 58.240 43.478 0.00 0.00 0.00 3.01
614 678 4.261801 CGTCCAGATATTTGAAGTGGGTT 58.738 43.478 0.00 0.00 0.00 4.11
615 679 4.700213 CGTCCAGATATTTGAAGTGGGTTT 59.300 41.667 0.00 0.00 0.00 3.27
616 680 5.391950 CGTCCAGATATTTGAAGTGGGTTTG 60.392 44.000 0.00 0.00 0.00 2.93
617 681 5.016173 TCCAGATATTTGAAGTGGGTTTGG 58.984 41.667 0.00 0.00 0.00 3.28
618 682 4.160252 CCAGATATTTGAAGTGGGTTTGGG 59.840 45.833 0.00 0.00 0.00 4.12
619 683 5.016173 CAGATATTTGAAGTGGGTTTGGGA 58.984 41.667 0.00 0.00 0.00 4.37
620 684 5.126061 CAGATATTTGAAGTGGGTTTGGGAG 59.874 44.000 0.00 0.00 0.00 4.30
621 685 2.080654 TTTGAAGTGGGTTTGGGAGG 57.919 50.000 0.00 0.00 0.00 4.30
622 686 0.930726 TTGAAGTGGGTTTGGGAGGT 59.069 50.000 0.00 0.00 0.00 3.85
623 687 0.184933 TGAAGTGGGTTTGGGAGGTG 59.815 55.000 0.00 0.00 0.00 4.00
624 688 1.152546 AAGTGGGTTTGGGAGGTGC 60.153 57.895 0.00 0.00 0.00 5.01
625 689 2.976494 AAGTGGGTTTGGGAGGTGCG 62.976 60.000 0.00 0.00 0.00 5.34
626 690 4.278513 TGGGTTTGGGAGGTGCGG 62.279 66.667 0.00 0.00 0.00 5.69
628 692 4.660938 GGTTTGGGAGGTGCGGCT 62.661 66.667 0.00 0.00 0.00 5.52
650 714 5.586243 GCTGGTATATGCTCTCAAGTCAAAA 59.414 40.000 0.00 0.00 0.00 2.44
659 723 7.377766 TGCTCTCAAGTCAAAATTATACACC 57.622 36.000 0.00 0.00 0.00 4.16
663 727 8.322906 TCTCAAGTCAAAATTATACACCACTG 57.677 34.615 0.00 0.00 0.00 3.66
686 750 4.506654 GGTGACTTGCCACTATATAACACG 59.493 45.833 0.00 0.00 37.24 4.49
687 751 5.107133 GTGACTTGCCACTATATAACACGT 58.893 41.667 0.00 0.00 34.38 4.49
688 752 5.005394 GTGACTTGCCACTATATAACACGTG 59.995 44.000 15.48 15.48 34.38 4.49
689 753 3.869246 ACTTGCCACTATATAACACGTGC 59.131 43.478 17.22 0.00 0.00 5.34
697 761 2.823196 TATAACACGTGCAATGCAGC 57.177 45.000 17.22 2.79 40.08 5.25
705 769 0.795735 GTGCAATGCAGCAGCTAACG 60.796 55.000 8.73 0.00 46.69 3.18
709 773 1.298157 AATGCAGCAGCTAACGCGAA 61.298 50.000 15.93 0.00 42.74 4.70
723 787 0.736325 CGCGAAGTCTCCGTGGAAAT 60.736 55.000 0.00 0.00 34.30 2.17
726 790 2.603560 GCGAAGTCTCCGTGGAAATAAG 59.396 50.000 0.00 0.00 0.00 1.73
731 795 6.183360 CGAAGTCTCCGTGGAAATAAGTACTA 60.183 42.308 0.00 0.00 0.00 1.82
732 796 7.472334 AAGTCTCCGTGGAAATAAGTACTAA 57.528 36.000 0.00 0.00 0.00 2.24
777 871 3.973206 TCCACCACGTGATTAGTGATT 57.027 42.857 19.30 0.00 41.83 2.57
778 872 4.280436 TCCACCACGTGATTAGTGATTT 57.720 40.909 19.30 0.00 41.83 2.17
1111 1327 2.404789 GTGGTCGCCGCAATCATG 59.595 61.111 4.81 0.00 33.65 3.07
1502 5929 9.996554 TGTCTATACAGTTTCATTCTTTCTGAA 57.003 29.630 0.00 0.00 39.24 3.02
1542 8807 3.678548 GGAGGAAAGATTACACACGACAC 59.321 47.826 0.00 0.00 0.00 3.67
1746 9081 2.804527 GACTTGTACCGAGTGGGAAAAC 59.195 50.000 0.00 0.00 40.75 2.43
1768 9106 4.345257 ACCCAGCATCAACGACTATAGAAT 59.655 41.667 6.78 0.00 0.00 2.40
1890 9236 4.092968 ACTCACGATAAAAGAAATGCCGAC 59.907 41.667 0.00 0.00 0.00 4.79
1925 9272 5.222337 ACAGAATGAGGGGTGAAAATACCTT 60.222 40.000 0.00 0.00 39.69 3.50
2018 9835 5.055642 ACAAAATTCTAAAGCTTACGCCC 57.944 39.130 0.00 0.00 36.60 6.13
2022 9839 3.359695 TTCTAAAGCTTACGCCCCAAT 57.640 42.857 0.00 0.00 36.60 3.16
2038 9855 3.934579 CCCCAATTTAAATTGAGCTGTGC 59.065 43.478 32.84 0.00 46.72 4.57
2044 9861 0.238289 AAATTGAGCTGTGCGTTCCG 59.762 50.000 0.00 0.00 0.00 4.30
2045 9862 0.884704 AATTGAGCTGTGCGTTCCGT 60.885 50.000 0.00 0.00 0.00 4.69
2046 9863 0.037697 ATTGAGCTGTGCGTTCCGTA 60.038 50.000 0.00 0.00 0.00 4.02
2047 9864 0.942410 TTGAGCTGTGCGTTCCGTAC 60.942 55.000 0.00 0.00 42.37 3.67
2060 9877 5.868258 TGCGTTCCGTACAAAATAATCTACA 59.132 36.000 0.00 0.00 0.00 2.74
2061 9878 6.535865 TGCGTTCCGTACAAAATAATCTACAT 59.464 34.615 0.00 0.00 0.00 2.29
2063 9880 7.372396 GCGTTCCGTACAAAATAATCTACATTG 59.628 37.037 0.00 0.00 0.00 2.82
2104 9921 3.393687 ACATCTTAGTTGCCCCCTCATA 58.606 45.455 0.00 0.00 0.00 2.15
2190 10008 6.341316 TCTCAAAATGATCTTCTAGTTCCGG 58.659 40.000 0.00 0.00 0.00 5.14
2248 10066 3.774734 AGGGGGTGTTTCCTGTATTTTC 58.225 45.455 0.00 0.00 36.25 2.29
2413 10238 4.275196 TCTTCCCTACTCATTATCGACACG 59.725 45.833 0.00 0.00 0.00 4.49
2451 10279 4.094294 GCGATAAAGACTGCCACAAATGTA 59.906 41.667 0.00 0.00 0.00 2.29
2464 10292 5.625197 GCCACAAATGTATTGCTCCTCAATT 60.625 40.000 0.00 0.00 42.48 2.32
2465 10293 6.405731 GCCACAAATGTATTGCTCCTCAATTA 60.406 38.462 0.00 0.00 42.48 1.40
2466 10294 7.685155 GCCACAAATGTATTGCTCCTCAATTAT 60.685 37.037 0.00 0.00 42.48 1.28
2467 10295 8.199449 CCACAAATGTATTGCTCCTCAATTATT 58.801 33.333 0.00 0.00 42.48 1.40
2474 10302 9.208022 TGTATTGCTCCTCAATTATTATTCTCG 57.792 33.333 0.00 0.00 42.48 4.04
2475 10303 9.424319 GTATTGCTCCTCAATTATTATTCTCGA 57.576 33.333 0.00 0.00 42.48 4.04
2476 10304 7.953158 TTGCTCCTCAATTATTATTCTCGAG 57.047 36.000 5.93 5.93 0.00 4.04
2477 10305 7.290110 TGCTCCTCAATTATTATTCTCGAGA 57.710 36.000 12.08 12.08 0.00 4.04
2479 10307 7.014711 TGCTCCTCAATTATTATTCTCGAGAGT 59.985 37.037 15.94 15.59 0.00 3.24
2480 10308 8.516234 GCTCCTCAATTATTATTCTCGAGAGTA 58.484 37.037 15.94 14.45 0.00 2.59
2481 10309 9.834628 CTCCTCAATTATTATTCTCGAGAGTAC 57.165 37.037 16.40 0.00 0.00 2.73
2483 10311 7.271653 CCTCAATTATTATTCTCGAGAGTACGC 59.728 40.741 16.40 0.00 0.00 4.42
2484 10312 7.872881 TCAATTATTATTCTCGAGAGTACGCT 58.127 34.615 16.40 0.00 0.00 5.07
2485 10313 8.996271 TCAATTATTATTCTCGAGAGTACGCTA 58.004 33.333 16.40 3.61 0.00 4.26
2486 10314 9.608617 CAATTATTATTCTCGAGAGTACGCTAA 57.391 33.333 16.40 13.90 0.00 3.09
2488 10316 9.776158 ATTATTATTCTCGAGAGTACGCTAATG 57.224 33.333 16.40 0.00 0.00 1.90
2489 10317 3.965292 TTCTCGAGAGTACGCTAATGG 57.035 47.619 15.94 0.00 0.00 3.16
2490 10318 1.602851 TCTCGAGAGTACGCTAATGGC 59.397 52.381 12.08 0.00 37.64 4.40
2501 10329 2.719426 GCTAATGGCGTACCGTATCT 57.281 50.000 0.00 0.00 39.70 1.98
2506 12960 5.061808 GCTAATGGCGTACCGTATCTTTATG 59.938 44.000 0.00 0.00 39.70 1.90
2507 12961 3.374220 TGGCGTACCGTATCTTTATGG 57.626 47.619 0.00 0.00 39.96 2.74
2510 12964 3.985925 GGCGTACCGTATCTTTATGGAAG 59.014 47.826 0.00 0.00 37.83 3.46
2512 12966 4.553323 CGTACCGTATCTTTATGGAAGGG 58.447 47.826 0.00 0.00 37.83 3.95
2514 12968 4.957684 ACCGTATCTTTATGGAAGGGAG 57.042 45.455 0.00 0.00 37.83 4.30
2516 12970 4.966805 ACCGTATCTTTATGGAAGGGAGAA 59.033 41.667 0.00 0.00 37.83 2.87
2518 12972 6.069847 ACCGTATCTTTATGGAAGGGAGAAAA 60.070 38.462 0.00 0.00 37.83 2.29
2521 12975 7.335924 CGTATCTTTATGGAAGGGAGAAAACAA 59.664 37.037 0.00 0.00 35.98 2.83
2522 12976 9.190317 GTATCTTTATGGAAGGGAGAAAACAAT 57.810 33.333 0.00 0.00 35.98 2.71
2529 12983 7.049799 TGGAAGGGAGAAAACAATTTACAAG 57.950 36.000 0.00 0.00 0.00 3.16
2534 12988 7.593825 AGGGAGAAAACAATTTACAAGATTCG 58.406 34.615 0.00 0.00 0.00 3.34
2535 12989 7.230712 AGGGAGAAAACAATTTACAAGATTCGT 59.769 33.333 0.00 0.00 0.00 3.85
2536 12990 7.326063 GGGAGAAAACAATTTACAAGATTCGTG 59.674 37.037 0.00 0.00 0.00 4.35
2537 12991 7.148967 GGAGAAAACAATTTACAAGATTCGTGC 60.149 37.037 0.00 0.00 0.00 5.34
2539 12993 4.078363 ACAATTTACAAGATTCGTGCGG 57.922 40.909 0.00 0.00 0.00 5.69
2541 12995 4.088648 CAATTTACAAGATTCGTGCGGTC 58.911 43.478 0.00 0.00 0.00 4.79
2543 12997 0.522626 TACAAGATTCGTGCGGTCGA 59.477 50.000 0.00 0.00 38.08 4.20
2544 12998 0.108804 ACAAGATTCGTGCGGTCGAT 60.109 50.000 0.00 0.00 39.57 3.59
2545 12999 0.298707 CAAGATTCGTGCGGTCGATG 59.701 55.000 0.00 0.00 39.57 3.84
2547 13001 3.197569 GATTCGTGCGGTCGATGCG 62.198 63.158 7.91 0.50 39.57 4.73
2548 13002 3.693382 ATTCGTGCGGTCGATGCGA 62.693 57.895 7.91 2.67 39.57 5.10
2550 13004 4.191485 CGTGCGGTCGATGCGAAC 62.191 66.667 7.91 0.00 40.50 3.95
2551 13005 3.109547 GTGCGGTCGATGCGAACA 61.110 61.111 5.68 0.00 44.54 3.18
2553 13007 2.164663 TGCGGTCGATGCGAACATC 61.165 57.895 5.68 0.00 44.54 3.06
2563 13017 0.036858 TGCGAACATCAATCACCCGA 60.037 50.000 0.00 0.00 0.00 5.14
2564 13018 0.652592 GCGAACATCAATCACCCGAG 59.347 55.000 0.00 0.00 0.00 4.63
2566 13020 1.737838 GAACATCAATCACCCGAGCA 58.262 50.000 0.00 0.00 0.00 4.26
2567 13021 1.398390 GAACATCAATCACCCGAGCAC 59.602 52.381 0.00 0.00 0.00 4.40
2568 13022 0.392998 ACATCAATCACCCGAGCACC 60.393 55.000 0.00 0.00 0.00 5.01
2569 13023 1.097547 CATCAATCACCCGAGCACCC 61.098 60.000 0.00 0.00 0.00 4.61
2570 13024 1.561769 ATCAATCACCCGAGCACCCA 61.562 55.000 0.00 0.00 0.00 4.51
2571 13025 2.040544 CAATCACCCGAGCACCCAC 61.041 63.158 0.00 0.00 0.00 4.61
2572 13026 2.224159 AATCACCCGAGCACCCACT 61.224 57.895 0.00 0.00 0.00 4.00
2573 13027 2.185310 AATCACCCGAGCACCCACTC 62.185 60.000 0.00 0.00 0.00 3.51
2575 13029 3.626924 ACCCGAGCACCCACTCAC 61.627 66.667 0.00 0.00 36.42 3.51
2576 13030 3.625897 CCCGAGCACCCACTCACA 61.626 66.667 0.00 0.00 36.42 3.58
2577 13031 2.357517 CCGAGCACCCACTCACAC 60.358 66.667 0.00 0.00 36.42 3.82
2578 13032 2.357517 CGAGCACCCACTCACACC 60.358 66.667 0.00 0.00 36.42 4.16
2579 13033 2.872388 CGAGCACCCACTCACACCT 61.872 63.158 0.00 0.00 36.42 4.00
2580 13034 1.532604 CGAGCACCCACTCACACCTA 61.533 60.000 0.00 0.00 36.42 3.08
2582 13036 0.762842 AGCACCCACTCACACCTACA 60.763 55.000 0.00 0.00 0.00 2.74
2583 13037 0.107831 GCACCCACTCACACCTACAA 59.892 55.000 0.00 0.00 0.00 2.41
2587 13041 2.248248 CCCACTCACACCTACAAGAGA 58.752 52.381 0.00 0.00 32.59 3.10
2589 13043 3.261897 CCCACTCACACCTACAAGAGAAT 59.738 47.826 0.00 0.00 32.59 2.40
2590 13044 4.499183 CCACTCACACCTACAAGAGAATC 58.501 47.826 0.00 0.00 32.59 2.52
2591 13045 4.021104 CCACTCACACCTACAAGAGAATCA 60.021 45.833 0.00 0.00 37.82 2.57
2592 13046 5.511373 CCACTCACACCTACAAGAGAATCAA 60.511 44.000 0.00 0.00 37.82 2.57
2593 13047 5.991606 CACTCACACCTACAAGAGAATCAAA 59.008 40.000 0.00 0.00 37.82 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 53 1.371183 CCATCACCGGTCGGCATAT 59.629 57.895 2.59 0.00 39.32 1.78
129 137 1.120530 ATAAGGTCGGCTCAACGGAT 58.879 50.000 0.00 0.00 0.00 4.18
165 173 2.432300 CCCGGCCGACAGTAGGATT 61.432 63.158 30.73 0.00 0.00 3.01
309 318 1.818363 CGATCTCCGGTCGTCTCCA 60.818 63.158 0.00 0.00 34.56 3.86
349 361 1.806542 GCTCAACTTTGGCGATCTTCA 59.193 47.619 0.00 0.00 0.00 3.02
354 366 0.883833 CCAAGCTCAACTTTGGCGAT 59.116 50.000 0.00 0.00 36.04 4.58
355 367 1.172180 CCCAAGCTCAACTTTGGCGA 61.172 55.000 0.00 0.00 34.62 5.54
357 369 0.032540 CACCCAAGCTCAACTTTGGC 59.967 55.000 0.00 0.00 43.58 4.52
358 370 0.675633 CCACCCAAGCTCAACTTTGG 59.324 55.000 0.00 0.00 44.96 3.28
359 371 1.067516 CACCACCCAAGCTCAACTTTG 59.932 52.381 0.00 0.00 36.04 2.77
361 373 0.468029 CCACCACCCAAGCTCAACTT 60.468 55.000 0.00 0.00 40.05 2.66
364 376 1.455849 CTCCACCACCCAAGCTCAA 59.544 57.895 0.00 0.00 0.00 3.02
366 378 2.352805 CCTCCACCACCCAAGCTC 59.647 66.667 0.00 0.00 0.00 4.09
367 379 3.260100 CCCTCCACCACCCAAGCT 61.260 66.667 0.00 0.00 0.00 3.74
369 381 2.531685 TCCCCTCCACCACCCAAG 60.532 66.667 0.00 0.00 0.00 3.61
370 382 2.531685 CTCCCCTCCACCACCCAA 60.532 66.667 0.00 0.00 0.00 4.12
371 383 3.869934 ACTCCCCTCCACCACCCA 61.870 66.667 0.00 0.00 0.00 4.51
374 386 1.128188 ACTTCACTCCCCTCCACCAC 61.128 60.000 0.00 0.00 0.00 4.16
375 387 0.401395 AACTTCACTCCCCTCCACCA 60.401 55.000 0.00 0.00 0.00 4.17
376 388 0.771755 AAACTTCACTCCCCTCCACC 59.228 55.000 0.00 0.00 0.00 4.61
388 400 1.753903 TCCTCCCCATCCAAACTTCA 58.246 50.000 0.00 0.00 0.00 3.02
391 431 5.616986 ACATATATTCCTCCCCATCCAAACT 59.383 40.000 0.00 0.00 0.00 2.66
393 433 5.222316 CCACATATATTCCTCCCCATCCAAA 60.222 44.000 0.00 0.00 0.00 3.28
394 434 4.292041 CCACATATATTCCTCCCCATCCAA 59.708 45.833 0.00 0.00 0.00 3.53
470 525 2.877097 ATATGCGGTTGATATGGGCA 57.123 45.000 0.00 0.00 38.09 5.36
480 544 4.273969 CGTATACAACCCAAATATGCGGTT 59.726 41.667 3.32 0.00 39.32 4.44
484 548 6.426937 ACTCATCGTATACAACCCAAATATGC 59.573 38.462 3.32 0.00 0.00 3.14
502 566 2.887568 GCTGACCGGCACTCATCG 60.888 66.667 0.00 0.00 0.00 3.84
541 605 2.363306 TTGATTCACACAGGTGCCTT 57.637 45.000 0.00 0.00 44.87 4.35
547 611 6.018832 GGTCACAAAATTTTGATTCACACAGG 60.019 38.462 32.20 6.45 40.55 4.00
552 616 5.047188 ACCGGTCACAAAATTTTGATTCAC 58.953 37.500 32.20 21.24 40.55 3.18
580 644 2.847234 TGGACGGACTGCCTGGTT 60.847 61.111 0.00 0.00 0.00 3.67
584 648 1.794714 AATATCTGGACGGACTGCCT 58.205 50.000 0.00 0.00 0.00 4.75
600 664 3.141272 ACCTCCCAAACCCACTTCAAATA 59.859 43.478 0.00 0.00 0.00 1.40
607 671 2.520968 GCACCTCCCAAACCCACT 59.479 61.111 0.00 0.00 0.00 4.00
609 673 4.278513 CCGCACCTCCCAAACCCA 62.279 66.667 0.00 0.00 0.00 4.51
615 679 2.882403 TATACCAGCCGCACCTCCCA 62.882 60.000 0.00 0.00 0.00 4.37
616 680 1.481056 ATATACCAGCCGCACCTCCC 61.481 60.000 0.00 0.00 0.00 4.30
617 681 0.320771 CATATACCAGCCGCACCTCC 60.321 60.000 0.00 0.00 0.00 4.30
618 682 0.951040 GCATATACCAGCCGCACCTC 60.951 60.000 0.00 0.00 0.00 3.85
619 683 1.071471 GCATATACCAGCCGCACCT 59.929 57.895 0.00 0.00 0.00 4.00
620 684 0.951040 GAGCATATACCAGCCGCACC 60.951 60.000 0.00 0.00 0.00 5.01
621 685 0.034059 AGAGCATATACCAGCCGCAC 59.966 55.000 0.00 0.00 0.00 5.34
622 686 0.318441 GAGAGCATATACCAGCCGCA 59.682 55.000 0.00 0.00 0.00 5.69
623 687 0.318441 TGAGAGCATATACCAGCCGC 59.682 55.000 0.00 0.00 0.00 6.53
624 688 2.036475 ACTTGAGAGCATATACCAGCCG 59.964 50.000 0.00 0.00 0.00 5.52
625 689 3.070159 TGACTTGAGAGCATATACCAGCC 59.930 47.826 0.00 0.00 0.00 4.85
626 690 4.327982 TGACTTGAGAGCATATACCAGC 57.672 45.455 0.00 0.00 0.00 4.85
627 691 7.798596 ATTTTGACTTGAGAGCATATACCAG 57.201 36.000 0.00 0.00 0.00 4.00
628 692 9.851686 ATAATTTTGACTTGAGAGCATATACCA 57.148 29.630 0.00 0.00 0.00 3.25
659 723 2.479566 ATAGTGGCAAGTCACCAGTG 57.520 50.000 0.47 0.00 41.07 3.66
663 727 4.506654 CGTGTTATATAGTGGCAAGTCACC 59.493 45.833 0.47 0.00 38.34 4.02
673 737 5.402464 TGCATTGCACGTGTTATATAGTG 57.598 39.130 18.38 6.45 37.63 2.74
686 750 0.795735 CGTTAGCTGCTGCATTGCAC 60.796 55.000 18.42 5.81 42.74 4.57
687 751 1.503091 CGTTAGCTGCTGCATTGCA 59.497 52.632 18.42 11.50 42.74 4.08
688 752 1.870901 GCGTTAGCTGCTGCATTGC 60.871 57.895 18.42 11.64 42.74 3.56
689 753 1.581912 CGCGTTAGCTGCTGCATTG 60.582 57.895 18.42 5.65 42.74 2.82
697 761 1.134530 CGGAGACTTCGCGTTAGCTG 61.135 60.000 5.77 0.00 42.32 4.24
705 769 2.288961 TATTTCCACGGAGACTTCGC 57.711 50.000 2.13 0.00 0.00 4.70
709 773 6.662663 AGTTAGTACTTATTTCCACGGAGACT 59.337 38.462 0.00 0.00 0.00 3.24
723 787 6.744537 GCGTCAAGATTTCGAGTTAGTACTTA 59.255 38.462 0.00 0.00 33.84 2.24
726 790 4.028670 CGCGTCAAGATTTCGAGTTAGTAC 60.029 45.833 0.00 0.00 0.00 2.73
731 795 1.779569 ACGCGTCAAGATTTCGAGTT 58.220 45.000 5.58 0.00 34.46 3.01
732 796 1.719780 GAACGCGTCAAGATTTCGAGT 59.280 47.619 14.44 0.00 38.97 4.18
777 871 0.342665 TCCTGGGATTACGGGGGTAA 59.657 55.000 0.00 0.00 37.50 2.85
778 872 0.398948 GTCCTGGGATTACGGGGGTA 60.399 60.000 0.00 0.00 37.50 3.69
809 903 1.000843 TGGATATGGATGTCTTCGCGG 59.999 52.381 6.13 0.00 0.00 6.46
812 906 3.070159 ACAGGTGGATATGGATGTCTTCG 59.930 47.826 0.00 0.00 0.00 3.79
817 911 2.630098 CGAGACAGGTGGATATGGATGT 59.370 50.000 0.00 0.00 0.00 3.06
818 912 2.611473 GCGAGACAGGTGGATATGGATG 60.611 54.545 0.00 0.00 0.00 3.51
1249 1465 2.849162 GGGGGAGATGCCATCGGA 60.849 66.667 0.00 0.00 38.95 4.55
1542 8807 5.034797 TCTCGTAACAAGATTACATCGCAG 58.965 41.667 0.00 0.00 0.00 5.18
1746 9081 4.322080 TTCTATAGTCGTTGATGCTGGG 57.678 45.455 0.00 0.00 0.00 4.45
1768 9106 6.182507 TCTAAAAACTGCCAGTTTCCTCTA 57.817 37.500 22.20 10.93 46.78 2.43
1796 9134 6.183360 ACAGGATACGCATATTTGAGTTTTGG 60.183 38.462 0.00 0.00 46.39 3.28
1809 9147 5.705609 AAAACTTTTCACAGGATACGCAT 57.294 34.783 0.00 0.00 46.39 4.73
1834 9172 4.038042 TGGTTCTTTGACAAACACACACAA 59.962 37.500 0.00 0.00 0.00 3.33
1890 9236 3.443037 CCTCATTCTGTAGTTGAGCTCG 58.557 50.000 9.64 0.00 36.41 5.03
1925 9272 3.222173 AGTGGCATGAGTAACAAACCA 57.778 42.857 0.00 0.00 35.92 3.67
2018 9835 4.236935 ACGCACAGCTCAATTTAAATTGG 58.763 39.130 30.96 23.98 44.51 3.16
2022 9839 3.896122 GGAACGCACAGCTCAATTTAAA 58.104 40.909 0.00 0.00 0.00 1.52
2049 9866 8.388103 GCGGCGAATATACAATGTAGATTATTT 58.612 33.333 12.98 0.00 0.00 1.40
2050 9867 7.764443 AGCGGCGAATATACAATGTAGATTATT 59.236 33.333 12.98 5.54 0.00 1.40
2051 9868 7.265673 AGCGGCGAATATACAATGTAGATTAT 58.734 34.615 12.98 0.00 0.00 1.28
2052 9869 6.627243 AGCGGCGAATATACAATGTAGATTA 58.373 36.000 12.98 0.00 0.00 1.75
2060 9877 3.244078 TGGAGAAGCGGCGAATATACAAT 60.244 43.478 12.98 0.00 0.00 2.71
2061 9878 2.101750 TGGAGAAGCGGCGAATATACAA 59.898 45.455 12.98 0.00 0.00 2.41
2063 9880 2.433868 TGGAGAAGCGGCGAATATAC 57.566 50.000 12.98 0.00 0.00 1.47
2190 10008 7.017254 TGGAAATGGGTATCTACTAATTCTCCC 59.983 40.741 0.00 0.00 34.77 4.30
2222 10040 1.573857 ACAGGAAACACCCCCTTCTTT 59.426 47.619 0.00 0.00 40.05 2.52
2413 10238 6.786103 GTCTTTATCGCGCTTTCATGTATTAC 59.214 38.462 5.56 0.00 0.00 1.89
2464 10292 7.625817 GCCATTAGCGTACTCTCGAGAATAATA 60.626 40.741 17.36 4.09 0.00 0.98
2465 10293 6.613233 CCATTAGCGTACTCTCGAGAATAAT 58.387 40.000 17.36 10.62 0.00 1.28
2466 10294 5.562307 GCCATTAGCGTACTCTCGAGAATAA 60.562 44.000 17.36 8.95 0.00 1.40
2467 10295 4.083431 GCCATTAGCGTACTCTCGAGAATA 60.083 45.833 17.36 8.24 0.00 1.75
2468 10296 3.304794 GCCATTAGCGTACTCTCGAGAAT 60.305 47.826 17.36 9.47 0.00 2.40
2469 10297 2.033049 GCCATTAGCGTACTCTCGAGAA 59.967 50.000 17.36 0.00 0.00 2.87
2471 10299 2.039327 GCCATTAGCGTACTCTCGAG 57.961 55.000 5.93 5.93 0.00 4.04
2492 10320 5.708544 TCTCCCTTCCATAAAGATACGGTA 58.291 41.667 0.00 0.00 37.12 4.02
2494 10322 5.546621 TTCTCCCTTCCATAAAGATACGG 57.453 43.478 0.00 0.00 37.12 4.02
2495 10323 6.821665 TGTTTTCTCCCTTCCATAAAGATACG 59.178 38.462 0.00 0.00 37.12 3.06
2496 10324 8.575649 TTGTTTTCTCCCTTCCATAAAGATAC 57.424 34.615 0.00 0.00 37.12 2.24
2497 10325 9.768215 AATTGTTTTCTCCCTTCCATAAAGATA 57.232 29.630 0.00 0.00 37.12 1.98
2499 10327 8.491045 AAATTGTTTTCTCCCTTCCATAAAGA 57.509 30.769 0.00 0.00 37.12 2.52
2501 10329 9.148879 TGTAAATTGTTTTCTCCCTTCCATAAA 57.851 29.630 0.00 0.00 0.00 1.40
2506 12960 7.284919 TCTTGTAAATTGTTTTCTCCCTTCC 57.715 36.000 0.00 0.00 0.00 3.46
2507 12961 9.411801 GAATCTTGTAAATTGTTTTCTCCCTTC 57.588 33.333 0.00 0.00 0.00 3.46
2510 12964 7.326063 CACGAATCTTGTAAATTGTTTTCTCCC 59.674 37.037 0.00 0.00 0.00 4.30
2512 12966 7.408290 CGCACGAATCTTGTAAATTGTTTTCTC 60.408 37.037 0.00 0.00 0.00 2.87
2514 12968 6.398517 CCGCACGAATCTTGTAAATTGTTTTC 60.399 38.462 0.00 0.00 0.00 2.29
2516 12970 4.915085 CCGCACGAATCTTGTAAATTGTTT 59.085 37.500 0.00 0.00 0.00 2.83
2518 12972 3.500680 ACCGCACGAATCTTGTAAATTGT 59.499 39.130 0.00 0.00 0.00 2.71
2521 12975 2.347452 CGACCGCACGAATCTTGTAAAT 59.653 45.455 0.00 0.00 35.09 1.40
2522 12976 1.722464 CGACCGCACGAATCTTGTAAA 59.278 47.619 0.00 0.00 35.09 2.01
2529 12983 2.621000 GCATCGACCGCACGAATC 59.379 61.111 3.85 0.00 45.16 2.52
2534 12988 2.348140 GATGTTCGCATCGACCGCAC 62.348 60.000 9.15 6.35 43.72 5.34
2535 12989 2.125713 ATGTTCGCATCGACCGCA 60.126 55.556 9.15 0.82 34.89 5.69
2536 12990 2.621000 GATGTTCGCATCGACCGC 59.379 61.111 2.68 0.66 43.72 5.68
2543 12997 1.016627 CGGGTGATTGATGTTCGCAT 58.983 50.000 0.00 0.00 41.22 4.73
2544 12998 0.036858 TCGGGTGATTGATGTTCGCA 60.037 50.000 0.00 0.00 0.00 5.10
2545 12999 0.652592 CTCGGGTGATTGATGTTCGC 59.347 55.000 0.00 0.00 0.00 4.70
2547 13001 1.398390 GTGCTCGGGTGATTGATGTTC 59.602 52.381 0.00 0.00 0.00 3.18
2548 13002 1.453155 GTGCTCGGGTGATTGATGTT 58.547 50.000 0.00 0.00 0.00 2.71
2550 13004 1.097547 GGGTGCTCGGGTGATTGATG 61.098 60.000 0.00 0.00 0.00 3.07
2551 13005 1.224592 GGGTGCTCGGGTGATTGAT 59.775 57.895 0.00 0.00 0.00 2.57
2553 13007 2.040544 GTGGGTGCTCGGGTGATTG 61.041 63.158 0.00 0.00 0.00 2.67
2555 13009 2.607750 AGTGGGTGCTCGGGTGAT 60.608 61.111 0.00 0.00 0.00 3.06
2557 13011 3.625897 TGAGTGGGTGCTCGGGTG 61.626 66.667 0.00 0.00 38.28 4.61
2558 13012 3.626924 GTGAGTGGGTGCTCGGGT 61.627 66.667 0.00 0.00 38.28 5.28
2559 13013 3.625897 TGTGAGTGGGTGCTCGGG 61.626 66.667 0.00 0.00 38.28 5.14
2560 13014 2.357517 GTGTGAGTGGGTGCTCGG 60.358 66.667 0.00 0.00 38.28 4.63
2563 13017 0.762842 TGTAGGTGTGAGTGGGTGCT 60.763 55.000 0.00 0.00 0.00 4.40
2564 13018 0.107831 TTGTAGGTGTGAGTGGGTGC 59.892 55.000 0.00 0.00 0.00 5.01
2566 13020 1.971357 CTCTTGTAGGTGTGAGTGGGT 59.029 52.381 0.00 0.00 0.00 4.51
2567 13021 2.248248 TCTCTTGTAGGTGTGAGTGGG 58.752 52.381 0.00 0.00 0.00 4.61
2568 13022 4.021104 TGATTCTCTTGTAGGTGTGAGTGG 60.021 45.833 0.00 0.00 0.00 4.00
2569 13023 5.139435 TGATTCTCTTGTAGGTGTGAGTG 57.861 43.478 0.00 0.00 0.00 3.51
2570 13024 5.808366 TTGATTCTCTTGTAGGTGTGAGT 57.192 39.130 0.00 0.00 0.00 3.41
2571 13025 5.119279 CGTTTGATTCTCTTGTAGGTGTGAG 59.881 44.000 0.00 0.00 0.00 3.51
2572 13026 4.988540 CGTTTGATTCTCTTGTAGGTGTGA 59.011 41.667 0.00 0.00 0.00 3.58
2573 13027 5.269459 CGTTTGATTCTCTTGTAGGTGTG 57.731 43.478 0.00 0.00 0.00 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.