Multiple sequence alignment - TraesCS4D01G302900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G302900 chr4D 100.000 2571 0 0 1 2571 471146977 471149547 0.000000e+00 4748
1 TraesCS4D01G302900 chr4D 97.023 739 21 1 1834 2571 328543275 328544013 0.000000e+00 1242
2 TraesCS4D01G302900 chr4B 91.125 1307 65 15 430 1709 593133727 593135009 0.000000e+00 1724
3 TraesCS4D01G302900 chr4B 89.908 109 10 1 333 441 593129253 593129360 3.450000e-29 139
4 TraesCS4D01G302900 chr4A 91.541 1064 52 14 681 1722 678367411 678368458 0.000000e+00 1432
5 TraesCS4D01G302900 chr2D 97.117 763 22 0 1809 2571 9666908 9667670 0.000000e+00 1288
6 TraesCS4D01G302900 chr2D 97.094 757 21 1 1815 2571 605775052 605775807 0.000000e+00 1275
7 TraesCS4D01G302900 chr2D 92.857 126 8 1 1 126 131291921 131292045 5.650000e-42 182
8 TraesCS4D01G302900 chr5D 97.226 757 21 0 1815 2571 482340301 482339545 0.000000e+00 1282
9 TraesCS4D01G302900 chr5D 96.042 758 28 2 1815 2571 23890910 23891666 0.000000e+00 1232
10 TraesCS4D01G302900 chr5D 95.894 755 31 0 1815 2569 23848331 23849085 0.000000e+00 1223
11 TraesCS4D01G302900 chr5D 93.701 127 8 0 1 127 493133477 493133351 9.390000e-45 191
12 TraesCS4D01G302900 chr5D 91.339 127 11 0 1 127 549792690 549792564 9.460000e-40 174
13 TraesCS4D01G302900 chr6D 97.094 757 21 1 1815 2571 445492553 445491798 0.000000e+00 1275
14 TraesCS4D01G302900 chr6D 96.697 757 23 1 1815 2571 61575942 61575188 0.000000e+00 1258
15 TraesCS4D01G302900 chr1D 93.536 758 45 4 1815 2571 11401676 11402430 0.000000e+00 1125
16 TraesCS4D01G302900 chr6A 92.913 127 8 1 1 127 62919663 62919538 1.570000e-42 183
17 TraesCS4D01G302900 chr2A 91.667 132 10 1 3 133 551483997 551484128 5.650000e-42 182
18 TraesCS4D01G302900 chrUn 92.188 128 9 1 1 127 67932313 67932186 2.030000e-41 180
19 TraesCS4D01G302900 chr2B 92.000 125 10 0 3 127 61336533 61336409 2.630000e-40 176
20 TraesCS4D01G302900 chr2B 92.000 125 9 1 3 127 541048481 541048604 9.460000e-40 174
21 TraesCS4D01G302900 chr1B 91.200 125 11 0 3 127 681059939 681060063 1.220000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G302900 chr4D 471146977 471149547 2570 False 4748 4748 100.000 1 2571 1 chr4D.!!$F2 2570
1 TraesCS4D01G302900 chr4D 328543275 328544013 738 False 1242 1242 97.023 1834 2571 1 chr4D.!!$F1 737
2 TraesCS4D01G302900 chr4B 593133727 593135009 1282 False 1724 1724 91.125 430 1709 1 chr4B.!!$F2 1279
3 TraesCS4D01G302900 chr4A 678367411 678368458 1047 False 1432 1432 91.541 681 1722 1 chr4A.!!$F1 1041
4 TraesCS4D01G302900 chr2D 9666908 9667670 762 False 1288 1288 97.117 1809 2571 1 chr2D.!!$F1 762
5 TraesCS4D01G302900 chr2D 605775052 605775807 755 False 1275 1275 97.094 1815 2571 1 chr2D.!!$F3 756
6 TraesCS4D01G302900 chr5D 482339545 482340301 756 True 1282 1282 97.226 1815 2571 1 chr5D.!!$R1 756
7 TraesCS4D01G302900 chr5D 23890910 23891666 756 False 1232 1232 96.042 1815 2571 1 chr5D.!!$F2 756
8 TraesCS4D01G302900 chr5D 23848331 23849085 754 False 1223 1223 95.894 1815 2569 1 chr5D.!!$F1 754
9 TraesCS4D01G302900 chr6D 445491798 445492553 755 True 1275 1275 97.094 1815 2571 1 chr6D.!!$R2 756
10 TraesCS4D01G302900 chr6D 61575188 61575942 754 True 1258 1258 96.697 1815 2571 1 chr6D.!!$R1 756
11 TraesCS4D01G302900 chr1D 11401676 11402430 754 False 1125 1125 93.536 1815 2571 1 chr1D.!!$F1 756

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.036164 TGCACGCCACCTGTTATCTT 59.964 50.0 0.0 0.0 0.0 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1742 1781 0.170339 GCTAGCCGCGTCCAAATTTT 59.83 50.0 2.29 0.0 0.0 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.209097 GTGTGCACGCCACCTGTT 61.209 61.111 19.81 0.00 44.01 3.16
18 19 1.890041 GTGTGCACGCCACCTGTTA 60.890 57.895 19.81 0.00 44.01 2.41
19 20 1.072332 TGTGCACGCCACCTGTTAT 59.928 52.632 13.13 0.00 44.01 1.89
20 21 0.953471 TGTGCACGCCACCTGTTATC 60.953 55.000 13.13 0.00 44.01 1.75
21 22 0.673644 GTGCACGCCACCTGTTATCT 60.674 55.000 0.00 0.00 38.55 1.98
22 23 0.036164 TGCACGCCACCTGTTATCTT 59.964 50.000 0.00 0.00 0.00 2.40
23 24 1.165270 GCACGCCACCTGTTATCTTT 58.835 50.000 0.00 0.00 0.00 2.52
24 25 1.130561 GCACGCCACCTGTTATCTTTC 59.869 52.381 0.00 0.00 0.00 2.62
25 26 2.422597 CACGCCACCTGTTATCTTTCA 58.577 47.619 0.00 0.00 0.00 2.69
26 27 2.416547 CACGCCACCTGTTATCTTTCAG 59.583 50.000 0.00 0.00 0.00 3.02
27 28 2.038557 ACGCCACCTGTTATCTTTCAGT 59.961 45.455 0.00 0.00 0.00 3.41
28 29 3.074412 CGCCACCTGTTATCTTTCAGTT 58.926 45.455 0.00 0.00 0.00 3.16
29 30 3.502211 CGCCACCTGTTATCTTTCAGTTT 59.498 43.478 0.00 0.00 0.00 2.66
30 31 4.023193 CGCCACCTGTTATCTTTCAGTTTT 60.023 41.667 0.00 0.00 0.00 2.43
31 32 5.507315 CGCCACCTGTTATCTTTCAGTTTTT 60.507 40.000 0.00 0.00 0.00 1.94
32 33 5.920840 GCCACCTGTTATCTTTCAGTTTTTC 59.079 40.000 0.00 0.00 0.00 2.29
33 34 6.239036 GCCACCTGTTATCTTTCAGTTTTTCT 60.239 38.462 0.00 0.00 0.00 2.52
34 35 7.684428 GCCACCTGTTATCTTTCAGTTTTTCTT 60.684 37.037 0.00 0.00 0.00 2.52
35 36 7.862873 CCACCTGTTATCTTTCAGTTTTTCTTC 59.137 37.037 0.00 0.00 0.00 2.87
36 37 8.405531 CACCTGTTATCTTTCAGTTTTTCTTCA 58.594 33.333 0.00 0.00 0.00 3.02
37 38 8.966868 ACCTGTTATCTTTCAGTTTTTCTTCAA 58.033 29.630 0.00 0.00 0.00 2.69
38 39 9.455847 CCTGTTATCTTTCAGTTTTTCTTCAAG 57.544 33.333 0.00 0.00 0.00 3.02
39 40 8.856490 TGTTATCTTTCAGTTTTTCTTCAAGC 57.144 30.769 0.00 0.00 0.00 4.01
40 41 8.686334 TGTTATCTTTCAGTTTTTCTTCAAGCT 58.314 29.630 0.00 0.00 0.00 3.74
41 42 9.521503 GTTATCTTTCAGTTTTTCTTCAAGCTT 57.478 29.630 0.00 0.00 0.00 3.74
43 44 8.640091 ATCTTTCAGTTTTTCTTCAAGCTTTC 57.360 30.769 0.00 0.00 0.00 2.62
44 45 6.747280 TCTTTCAGTTTTTCTTCAAGCTTTCG 59.253 34.615 0.00 0.00 0.00 3.46
45 46 4.351192 TCAGTTTTTCTTCAAGCTTTCGC 58.649 39.130 0.00 0.00 0.00 4.70
46 47 3.487207 CAGTTTTTCTTCAAGCTTTCGCC 59.513 43.478 0.00 0.00 36.60 5.54
47 48 3.381590 AGTTTTTCTTCAAGCTTTCGCCT 59.618 39.130 0.00 0.00 36.60 5.52
48 49 4.112634 GTTTTTCTTCAAGCTTTCGCCTT 58.887 39.130 0.00 0.00 36.60 4.35
49 50 4.385358 TTTTCTTCAAGCTTTCGCCTTT 57.615 36.364 0.00 0.00 36.60 3.11
50 51 3.354089 TTCTTCAAGCTTTCGCCTTTG 57.646 42.857 0.00 0.00 36.60 2.77
51 52 2.297701 TCTTCAAGCTTTCGCCTTTGT 58.702 42.857 0.00 0.00 36.60 2.83
52 53 3.472652 TCTTCAAGCTTTCGCCTTTGTA 58.527 40.909 0.00 0.00 36.60 2.41
53 54 4.072131 TCTTCAAGCTTTCGCCTTTGTAT 58.928 39.130 0.00 0.00 36.60 2.29
54 55 4.154195 TCTTCAAGCTTTCGCCTTTGTATC 59.846 41.667 0.00 0.00 36.60 2.24
55 56 3.407698 TCAAGCTTTCGCCTTTGTATCA 58.592 40.909 0.00 0.00 36.60 2.15
56 57 3.436704 TCAAGCTTTCGCCTTTGTATCAG 59.563 43.478 0.00 0.00 36.60 2.90
57 58 3.059352 AGCTTTCGCCTTTGTATCAGT 57.941 42.857 0.00 0.00 36.60 3.41
58 59 4.202245 AGCTTTCGCCTTTGTATCAGTA 57.798 40.909 0.00 0.00 36.60 2.74
59 60 3.933332 AGCTTTCGCCTTTGTATCAGTAC 59.067 43.478 0.00 0.00 36.60 2.73
60 61 3.933332 GCTTTCGCCTTTGTATCAGTACT 59.067 43.478 0.00 0.00 0.00 2.73
61 62 4.201724 GCTTTCGCCTTTGTATCAGTACTG 60.202 45.833 17.17 17.17 0.00 2.74
62 63 4.530710 TTCGCCTTTGTATCAGTACTGT 57.469 40.909 21.99 12.12 0.00 3.55
63 64 4.530710 TCGCCTTTGTATCAGTACTGTT 57.469 40.909 21.99 16.36 0.00 3.16
64 65 4.242475 TCGCCTTTGTATCAGTACTGTTG 58.758 43.478 21.99 0.00 0.00 3.33
65 66 3.994392 CGCCTTTGTATCAGTACTGTTGT 59.006 43.478 21.99 12.04 0.00 3.32
66 67 5.047872 TCGCCTTTGTATCAGTACTGTTGTA 60.048 40.000 21.99 11.12 0.00 2.41
67 68 5.810587 CGCCTTTGTATCAGTACTGTTGTAT 59.189 40.000 21.99 10.92 0.00 2.29
68 69 6.019801 CGCCTTTGTATCAGTACTGTTGTATC 60.020 42.308 21.99 8.91 0.00 2.24
69 70 6.258068 GCCTTTGTATCAGTACTGTTGTATCC 59.742 42.308 21.99 0.68 0.00 2.59
70 71 7.556844 CCTTTGTATCAGTACTGTTGTATCCT 58.443 38.462 21.99 1.99 0.00 3.24
71 72 8.692710 CCTTTGTATCAGTACTGTTGTATCCTA 58.307 37.037 21.99 0.05 0.00 2.94
72 73 9.737427 CTTTGTATCAGTACTGTTGTATCCTAG 57.263 37.037 21.99 6.90 0.00 3.02
73 74 7.273320 TGTATCAGTACTGTTGTATCCTAGC 57.727 40.000 21.99 3.31 0.00 3.42
74 75 7.061054 TGTATCAGTACTGTTGTATCCTAGCT 58.939 38.462 21.99 0.00 0.00 3.32
75 76 5.836821 TCAGTACTGTTGTATCCTAGCTG 57.163 43.478 21.99 0.00 0.00 4.24
76 77 4.645136 TCAGTACTGTTGTATCCTAGCTGG 59.355 45.833 21.99 0.00 37.10 4.85
77 78 4.402793 CAGTACTGTTGTATCCTAGCTGGT 59.597 45.833 15.06 0.00 37.07 4.00
78 79 5.024118 AGTACTGTTGTATCCTAGCTGGTT 58.976 41.667 0.00 0.00 37.07 3.67
79 80 4.207891 ACTGTTGTATCCTAGCTGGTTG 57.792 45.455 0.00 0.00 37.07 3.77
80 81 3.838317 ACTGTTGTATCCTAGCTGGTTGA 59.162 43.478 0.00 0.00 37.07 3.18
81 82 4.471386 ACTGTTGTATCCTAGCTGGTTGAT 59.529 41.667 0.00 0.00 37.07 2.57
82 83 4.769688 TGTTGTATCCTAGCTGGTTGATG 58.230 43.478 0.00 0.00 37.07 3.07
83 84 4.130118 GTTGTATCCTAGCTGGTTGATGG 58.870 47.826 0.00 0.00 37.07 3.51
84 85 2.104792 TGTATCCTAGCTGGTTGATGGC 59.895 50.000 0.00 0.00 37.07 4.40
85 86 1.516110 ATCCTAGCTGGTTGATGGCT 58.484 50.000 0.00 0.00 39.74 4.75
86 87 1.289160 TCCTAGCTGGTTGATGGCTT 58.711 50.000 0.00 0.00 37.50 4.35
87 88 1.210478 TCCTAGCTGGTTGATGGCTTC 59.790 52.381 0.00 0.00 37.50 3.86
88 89 1.065199 CCTAGCTGGTTGATGGCTTCA 60.065 52.381 0.00 0.00 37.50 3.02
89 90 2.422519 CCTAGCTGGTTGATGGCTTCAT 60.423 50.000 3.72 0.00 37.50 2.57
90 91 2.226962 AGCTGGTTGATGGCTTCATT 57.773 45.000 3.72 0.00 33.34 2.57
91 92 3.370840 AGCTGGTTGATGGCTTCATTA 57.629 42.857 3.72 0.00 33.34 1.90
92 93 3.700538 AGCTGGTTGATGGCTTCATTAA 58.299 40.909 3.72 0.00 33.34 1.40
93 94 4.284178 AGCTGGTTGATGGCTTCATTAAT 58.716 39.130 3.72 0.00 33.34 1.40
94 95 4.713321 AGCTGGTTGATGGCTTCATTAATT 59.287 37.500 3.72 0.00 33.34 1.40
95 96 5.188359 AGCTGGTTGATGGCTTCATTAATTT 59.812 36.000 3.72 0.00 33.34 1.82
96 97 6.380846 AGCTGGTTGATGGCTTCATTAATTTA 59.619 34.615 3.72 0.00 33.34 1.40
97 98 7.041107 GCTGGTTGATGGCTTCATTAATTTAA 58.959 34.615 3.72 0.00 33.34 1.52
98 99 7.548780 GCTGGTTGATGGCTTCATTAATTTAAA 59.451 33.333 3.72 0.00 33.34 1.52
99 100 9.090692 CTGGTTGATGGCTTCATTAATTTAAAG 57.909 33.333 3.72 0.00 33.34 1.85
100 101 8.592809 TGGTTGATGGCTTCATTAATTTAAAGT 58.407 29.630 3.72 0.00 33.34 2.66
101 102 9.087424 GGTTGATGGCTTCATTAATTTAAAGTC 57.913 33.333 3.72 0.00 33.34 3.01
102 103 9.638239 GTTGATGGCTTCATTAATTTAAAGTCA 57.362 29.630 3.72 10.19 37.70 3.41
103 104 9.859427 TTGATGGCTTCATTAATTTAAAGTCAG 57.141 29.630 3.72 0.00 36.84 3.51
104 105 8.469200 TGATGGCTTCATTAATTTAAAGTCAGG 58.531 33.333 12.32 0.00 36.84 3.86
105 106 6.630071 TGGCTTCATTAATTTAAAGTCAGGC 58.370 36.000 0.00 10.26 30.43 4.85
106 107 6.437162 TGGCTTCATTAATTTAAAGTCAGGCT 59.563 34.615 14.58 0.00 30.43 4.58
107 108 7.039082 TGGCTTCATTAATTTAAAGTCAGGCTT 60.039 33.333 14.58 0.00 39.52 4.35
109 110 9.855021 GCTTCATTAATTTAAAGTCAGGCTTTA 57.145 29.630 2.89 2.89 44.90 1.85
118 119 9.914131 ATTTAAAGTCAGGCTTTATGTCTTTTC 57.086 29.630 8.07 0.00 45.77 2.29
119 120 8.691661 TTAAAGTCAGGCTTTATGTCTTTTCT 57.308 30.769 8.07 0.00 45.77 2.52
120 121 6.809630 AAGTCAGGCTTTATGTCTTTTCTC 57.190 37.500 0.00 0.00 32.57 2.87
121 122 6.120507 AGTCAGGCTTTATGTCTTTTCTCT 57.879 37.500 0.00 0.00 0.00 3.10
122 123 7.246171 AGTCAGGCTTTATGTCTTTTCTCTA 57.754 36.000 0.00 0.00 0.00 2.43
123 124 7.680730 AGTCAGGCTTTATGTCTTTTCTCTAA 58.319 34.615 0.00 0.00 0.00 2.10
124 125 8.157476 AGTCAGGCTTTATGTCTTTTCTCTAAA 58.843 33.333 0.00 0.00 0.00 1.85
125 126 8.784043 GTCAGGCTTTATGTCTTTTCTCTAAAA 58.216 33.333 0.00 0.00 33.58 1.52
126 127 9.349713 TCAGGCTTTATGTCTTTTCTCTAAAAA 57.650 29.630 0.00 0.00 34.26 1.94
127 128 9.617975 CAGGCTTTATGTCTTTTCTCTAAAAAG 57.382 33.333 4.30 4.30 38.30 2.27
128 129 9.574516 AGGCTTTATGTCTTTTCTCTAAAAAGA 57.425 29.630 8.48 8.48 42.15 2.52
141 142 8.553459 TTCTCTAAAAAGATCAATGACTCACC 57.447 34.615 0.00 0.00 0.00 4.02
142 143 6.813649 TCTCTAAAAAGATCAATGACTCACCG 59.186 38.462 0.00 0.00 0.00 4.94
143 144 6.464222 TCTAAAAAGATCAATGACTCACCGT 58.536 36.000 0.00 0.00 0.00 4.83
144 145 7.608153 TCTAAAAAGATCAATGACTCACCGTA 58.392 34.615 0.00 0.00 0.00 4.02
145 146 6.481954 AAAAAGATCAATGACTCACCGTAC 57.518 37.500 0.00 0.00 0.00 3.67
146 147 3.422417 AGATCAATGACTCACCGTACG 57.578 47.619 8.69 8.69 0.00 3.67
147 148 1.852895 GATCAATGACTCACCGTACGC 59.147 52.381 10.49 0.00 0.00 4.42
148 149 0.108992 TCAATGACTCACCGTACGCC 60.109 55.000 10.49 0.00 0.00 5.68
149 150 1.082117 CAATGACTCACCGTACGCCC 61.082 60.000 10.49 0.00 0.00 6.13
150 151 2.234913 AATGACTCACCGTACGCCCC 62.235 60.000 10.49 0.00 0.00 5.80
151 152 3.376078 GACTCACCGTACGCCCCA 61.376 66.667 10.49 0.00 0.00 4.96
152 153 2.918802 ACTCACCGTACGCCCCAA 60.919 61.111 10.49 0.00 0.00 4.12
153 154 2.125673 CTCACCGTACGCCCCAAG 60.126 66.667 10.49 0.00 0.00 3.61
154 155 2.918802 TCACCGTACGCCCCAAGT 60.919 61.111 10.49 0.00 0.00 3.16
155 156 2.031465 CACCGTACGCCCCAAGTT 59.969 61.111 10.49 0.00 0.00 2.66
156 157 1.598685 CACCGTACGCCCCAAGTTT 60.599 57.895 10.49 0.00 0.00 2.66
157 158 1.148949 ACCGTACGCCCCAAGTTTT 59.851 52.632 10.49 0.00 0.00 2.43
158 159 0.396060 ACCGTACGCCCCAAGTTTTA 59.604 50.000 10.49 0.00 0.00 1.52
159 160 0.798159 CCGTACGCCCCAAGTTTTAC 59.202 55.000 10.49 0.00 0.00 2.01
160 161 0.798159 CGTACGCCCCAAGTTTTACC 59.202 55.000 0.52 0.00 0.00 2.85
161 162 1.608801 CGTACGCCCCAAGTTTTACCT 60.609 52.381 0.52 0.00 0.00 3.08
162 163 2.507484 GTACGCCCCAAGTTTTACCTT 58.493 47.619 0.00 0.00 0.00 3.50
163 164 1.324383 ACGCCCCAAGTTTTACCTTG 58.676 50.000 0.00 0.00 41.21 3.61
164 165 0.038618 CGCCCCAAGTTTTACCTTGC 60.039 55.000 0.00 0.00 40.40 4.01
165 166 1.338107 GCCCCAAGTTTTACCTTGCT 58.662 50.000 0.00 0.00 40.40 3.91
166 167 2.521126 GCCCCAAGTTTTACCTTGCTA 58.479 47.619 0.00 0.00 40.40 3.49
167 168 2.492088 GCCCCAAGTTTTACCTTGCTAG 59.508 50.000 0.00 0.00 40.40 3.42
168 169 2.492088 CCCCAAGTTTTACCTTGCTAGC 59.508 50.000 8.10 8.10 40.40 3.42
169 170 3.153919 CCCAAGTTTTACCTTGCTAGCA 58.846 45.455 14.93 14.93 40.40 3.49
170 171 3.057526 CCCAAGTTTTACCTTGCTAGCAC 60.058 47.826 19.17 2.93 40.40 4.40
171 172 3.057526 CCAAGTTTTACCTTGCTAGCACC 60.058 47.826 19.17 0.00 40.40 5.01
172 173 3.790089 AGTTTTACCTTGCTAGCACCT 57.210 42.857 19.17 5.01 0.00 4.00
173 174 4.100279 AGTTTTACCTTGCTAGCACCTT 57.900 40.909 19.17 6.65 0.00 3.50
174 175 4.072839 AGTTTTACCTTGCTAGCACCTTC 58.927 43.478 19.17 3.12 0.00 3.46
175 176 3.780804 TTTACCTTGCTAGCACCTTCA 57.219 42.857 19.17 0.53 0.00 3.02
176 177 4.301072 TTTACCTTGCTAGCACCTTCAT 57.699 40.909 19.17 2.63 0.00 2.57
177 178 2.119801 ACCTTGCTAGCACCTTCATG 57.880 50.000 19.17 1.77 0.00 3.07
178 179 0.737219 CCTTGCTAGCACCTTCATGC 59.263 55.000 19.17 0.00 46.50 4.06
188 189 3.961182 GCACCTTCATGCAATATGACTG 58.039 45.455 0.00 0.00 45.39 3.51
189 190 3.794475 GCACCTTCATGCAATATGACTGC 60.794 47.826 0.00 0.00 45.39 4.40
196 197 3.745332 TGCAATATGACTGCACTTTCG 57.255 42.857 0.00 0.00 44.67 3.46
197 198 2.419673 TGCAATATGACTGCACTTTCGG 59.580 45.455 0.00 0.00 44.67 4.30
198 199 2.420022 GCAATATGACTGCACTTTCGGT 59.580 45.455 0.00 0.00 39.69 4.69
199 200 3.621268 GCAATATGACTGCACTTTCGGTA 59.379 43.478 0.00 0.00 39.69 4.02
200 201 4.260375 GCAATATGACTGCACTTTCGGTAG 60.260 45.833 0.00 0.00 39.69 3.18
201 202 5.109210 CAATATGACTGCACTTTCGGTAGA 58.891 41.667 0.00 0.00 0.00 2.59
202 203 3.895232 ATGACTGCACTTTCGGTAGAT 57.105 42.857 0.00 0.00 0.00 1.98
203 204 2.959516 TGACTGCACTTTCGGTAGATG 58.040 47.619 0.00 0.00 0.00 2.90
204 205 2.271800 GACTGCACTTTCGGTAGATGG 58.728 52.381 0.00 0.00 0.00 3.51
205 206 1.899814 ACTGCACTTTCGGTAGATGGA 59.100 47.619 0.00 0.00 0.00 3.41
206 207 2.501723 ACTGCACTTTCGGTAGATGGAT 59.498 45.455 0.00 0.00 0.00 3.41
207 208 3.126831 CTGCACTTTCGGTAGATGGATC 58.873 50.000 0.00 0.00 0.00 3.36
208 209 2.158957 TGCACTTTCGGTAGATGGATCC 60.159 50.000 4.20 4.20 0.00 3.36
209 210 2.103263 GCACTTTCGGTAGATGGATCCT 59.897 50.000 14.23 0.00 0.00 3.24
210 211 3.432326 GCACTTTCGGTAGATGGATCCTT 60.432 47.826 14.23 6.57 0.00 3.36
211 212 4.770795 CACTTTCGGTAGATGGATCCTTT 58.229 43.478 14.23 0.00 0.00 3.11
212 213 5.684030 GCACTTTCGGTAGATGGATCCTTTA 60.684 44.000 14.23 0.00 0.00 1.85
213 214 5.753921 CACTTTCGGTAGATGGATCCTTTAC 59.246 44.000 14.23 11.95 0.00 2.01
214 215 4.579454 TTCGGTAGATGGATCCTTTACG 57.421 45.455 14.23 10.13 0.00 3.18
215 216 2.889045 TCGGTAGATGGATCCTTTACGG 59.111 50.000 14.23 15.17 0.00 4.02
225 226 1.946984 TCCTTTACGGAGGGTGATGT 58.053 50.000 2.49 0.00 36.69 3.06
226 227 1.829222 TCCTTTACGGAGGGTGATGTC 59.171 52.381 2.49 0.00 36.69 3.06
227 228 1.553248 CCTTTACGGAGGGTGATGTCA 59.447 52.381 0.00 0.00 32.94 3.58
228 229 2.618053 CTTTACGGAGGGTGATGTCAC 58.382 52.381 4.58 4.58 45.72 3.67
236 237 4.388499 GTGATGTCACGGGGCGGT 62.388 66.667 0.00 0.00 37.10 5.68
237 238 3.632080 TGATGTCACGGGGCGGTT 61.632 61.111 0.00 0.00 0.00 4.44
238 239 3.124921 GATGTCACGGGGCGGTTG 61.125 66.667 0.00 0.00 0.00 3.77
239 240 4.715523 ATGTCACGGGGCGGTTGG 62.716 66.667 0.00 0.00 0.00 3.77
246 247 4.815108 GGGGCGGTTGGGATGTCC 62.815 72.222 0.00 0.00 0.00 4.02
247 248 3.728373 GGGCGGTTGGGATGTCCT 61.728 66.667 0.00 0.00 36.20 3.85
248 249 2.372074 GGGCGGTTGGGATGTCCTA 61.372 63.158 0.00 0.00 36.20 2.94
249 250 1.153229 GGCGGTTGGGATGTCCTAC 60.153 63.158 0.00 0.00 39.95 3.18
250 251 1.520787 GCGGTTGGGATGTCCTACG 60.521 63.158 0.00 0.00 41.28 3.51
251 252 1.952102 GCGGTTGGGATGTCCTACGA 61.952 60.000 0.00 0.00 41.28 3.43
252 253 0.179119 CGGTTGGGATGTCCTACGAC 60.179 60.000 0.00 0.00 41.28 4.34
253 254 0.179119 GGTTGGGATGTCCTACGACG 60.179 60.000 0.00 0.00 42.37 5.12
254 255 0.813184 GTTGGGATGTCCTACGACGA 59.187 55.000 0.00 0.00 42.37 4.20
255 256 0.813184 TTGGGATGTCCTACGACGAC 59.187 55.000 0.00 0.00 42.37 4.34
256 257 0.322726 TGGGATGTCCTACGACGACA 60.323 55.000 0.00 0.00 44.00 4.35
261 262 2.844122 TGTCCTACGACGACATGATG 57.156 50.000 0.00 0.00 42.37 3.07
262 263 1.404035 TGTCCTACGACGACATGATGG 59.596 52.381 0.00 0.00 42.37 3.51
263 264 1.404391 GTCCTACGACGACATGATGGT 59.596 52.381 0.00 0.00 0.00 3.55
264 265 2.097036 TCCTACGACGACATGATGGTT 58.903 47.619 0.00 0.00 0.00 3.67
265 266 2.098607 TCCTACGACGACATGATGGTTC 59.901 50.000 0.00 0.00 0.00 3.62
266 267 2.159296 CCTACGACGACATGATGGTTCA 60.159 50.000 0.00 0.00 36.00 3.18
267 268 1.996292 ACGACGACATGATGGTTCAG 58.004 50.000 0.00 0.00 34.73 3.02
268 269 1.272490 ACGACGACATGATGGTTCAGT 59.728 47.619 0.00 0.00 34.73 3.41
269 270 1.920574 CGACGACATGATGGTTCAGTC 59.079 52.381 0.00 0.00 34.73 3.51
270 271 2.671070 CGACGACATGATGGTTCAGTCA 60.671 50.000 0.00 0.00 34.73 3.41
271 272 3.525537 GACGACATGATGGTTCAGTCAT 58.474 45.455 0.00 0.00 34.73 3.06
272 273 3.935203 GACGACATGATGGTTCAGTCATT 59.065 43.478 0.00 0.00 34.73 2.57
273 274 4.326826 ACGACATGATGGTTCAGTCATTT 58.673 39.130 0.00 0.00 34.73 2.32
274 275 4.761739 ACGACATGATGGTTCAGTCATTTT 59.238 37.500 0.00 0.00 34.73 1.82
275 276 5.106555 ACGACATGATGGTTCAGTCATTTTC 60.107 40.000 0.00 0.00 34.73 2.29
276 277 5.122869 CGACATGATGGTTCAGTCATTTTCT 59.877 40.000 0.00 0.00 34.73 2.52
277 278 6.506500 ACATGATGGTTCAGTCATTTTCTC 57.493 37.500 0.00 0.00 34.73 2.87
278 279 5.122869 ACATGATGGTTCAGTCATTTTCTCG 59.877 40.000 0.00 0.00 34.73 4.04
279 280 4.002982 TGATGGTTCAGTCATTTTCTCGG 58.997 43.478 0.00 0.00 0.00 4.63
280 281 2.151202 TGGTTCAGTCATTTTCTCGGC 58.849 47.619 0.00 0.00 0.00 5.54
281 282 1.128692 GGTTCAGTCATTTTCTCGGCG 59.871 52.381 0.00 0.00 0.00 6.46
282 283 1.798813 GTTCAGTCATTTTCTCGGCGT 59.201 47.619 6.85 0.00 0.00 5.68
283 284 2.991190 GTTCAGTCATTTTCTCGGCGTA 59.009 45.455 6.85 0.00 0.00 4.42
284 285 3.520290 TCAGTCATTTTCTCGGCGTAT 57.480 42.857 6.85 0.00 0.00 3.06
285 286 3.444916 TCAGTCATTTTCTCGGCGTATC 58.555 45.455 6.85 0.00 0.00 2.24
286 287 2.216488 CAGTCATTTTCTCGGCGTATCG 59.784 50.000 6.85 0.00 0.00 2.92
304 305 6.231365 CGTATCGCTATTTATTTAACTGCGG 58.769 40.000 0.00 0.00 39.60 5.69
305 306 6.129009 CGTATCGCTATTTATTTAACTGCGGT 60.129 38.462 0.00 0.00 39.60 5.68
306 307 5.398176 TCGCTATTTATTTAACTGCGGTG 57.602 39.130 0.00 0.00 39.60 4.94
307 308 5.110598 TCGCTATTTATTTAACTGCGGTGA 58.889 37.500 0.00 0.00 39.60 4.02
308 309 5.005971 TCGCTATTTATTTAACTGCGGTGAC 59.994 40.000 0.00 0.00 39.60 3.67
321 322 3.114558 GGTGACGCTCTTGAGACAG 57.885 57.895 1.30 0.00 0.00 3.51
322 323 0.598562 GGTGACGCTCTTGAGACAGA 59.401 55.000 1.30 0.00 0.00 3.41
323 324 1.402194 GGTGACGCTCTTGAGACAGAG 60.402 57.143 1.30 0.00 43.02 3.35
324 325 1.537638 GTGACGCTCTTGAGACAGAGA 59.462 52.381 1.30 0.00 42.81 3.10
325 326 2.163412 GTGACGCTCTTGAGACAGAGAT 59.837 50.000 1.30 0.00 42.81 2.75
326 327 2.822561 TGACGCTCTTGAGACAGAGATT 59.177 45.455 1.30 0.00 42.81 2.40
327 328 3.119673 TGACGCTCTTGAGACAGAGATTC 60.120 47.826 1.30 0.00 42.81 2.52
328 329 2.822561 ACGCTCTTGAGACAGAGATTCA 59.177 45.455 1.30 0.00 42.81 2.57
329 330 3.446873 ACGCTCTTGAGACAGAGATTCAT 59.553 43.478 1.30 0.00 42.81 2.57
330 331 3.797796 CGCTCTTGAGACAGAGATTCATG 59.202 47.826 1.30 0.00 42.81 3.07
331 332 3.556775 GCTCTTGAGACAGAGATTCATGC 59.443 47.826 1.30 0.00 42.81 4.06
332 333 4.756502 CTCTTGAGACAGAGATTCATGCA 58.243 43.478 0.00 0.00 42.81 3.96
333 334 5.354842 TCTTGAGACAGAGATTCATGCAT 57.645 39.130 0.00 0.00 0.00 3.96
334 335 5.742063 TCTTGAGACAGAGATTCATGCATT 58.258 37.500 0.00 0.00 0.00 3.56
335 336 5.585047 TCTTGAGACAGAGATTCATGCATTG 59.415 40.000 0.00 0.00 0.00 2.82
336 337 5.093849 TGAGACAGAGATTCATGCATTGA 57.906 39.130 0.00 0.00 0.00 2.57
337 338 5.681639 TGAGACAGAGATTCATGCATTGAT 58.318 37.500 0.00 0.00 33.34 2.57
338 339 5.527582 TGAGACAGAGATTCATGCATTGATG 59.472 40.000 0.00 0.00 33.34 3.07
339 340 5.681639 AGACAGAGATTCATGCATTGATGA 58.318 37.500 0.00 0.00 33.34 2.92
340 341 6.299922 AGACAGAGATTCATGCATTGATGAT 58.700 36.000 0.00 0.00 33.34 2.45
341 342 6.773200 AGACAGAGATTCATGCATTGATGATT 59.227 34.615 0.00 0.00 33.34 2.57
342 343 6.739112 ACAGAGATTCATGCATTGATGATTG 58.261 36.000 0.00 0.00 33.34 2.67
343 344 6.152379 CAGAGATTCATGCATTGATGATTGG 58.848 40.000 0.00 0.00 33.34 3.16
344 345 5.833667 AGAGATTCATGCATTGATGATTGGT 59.166 36.000 0.00 0.00 33.34 3.67
345 346 7.002276 AGAGATTCATGCATTGATGATTGGTA 58.998 34.615 0.00 0.00 33.34 3.25
346 347 6.978338 AGATTCATGCATTGATGATTGGTAC 58.022 36.000 0.00 0.00 33.34 3.34
347 348 6.548251 AGATTCATGCATTGATGATTGGTACA 59.452 34.615 0.00 0.00 33.34 2.90
348 349 5.761165 TCATGCATTGATGATTGGTACAG 57.239 39.130 0.00 0.00 42.39 2.74
349 350 4.037089 TCATGCATTGATGATTGGTACAGC 59.963 41.667 0.00 0.00 42.39 4.40
350 351 3.354467 TGCATTGATGATTGGTACAGCA 58.646 40.909 0.00 0.00 42.39 4.41
351 352 3.129113 TGCATTGATGATTGGTACAGCAC 59.871 43.478 0.00 0.00 42.39 4.40
352 353 3.379372 GCATTGATGATTGGTACAGCACT 59.621 43.478 0.00 0.00 42.39 4.40
353 354 4.142315 GCATTGATGATTGGTACAGCACTT 60.142 41.667 0.00 0.00 42.39 3.16
354 355 5.066375 GCATTGATGATTGGTACAGCACTTA 59.934 40.000 0.00 0.00 42.39 2.24
355 356 6.489675 CATTGATGATTGGTACAGCACTTAC 58.510 40.000 0.00 0.00 42.39 2.34
356 357 5.420725 TGATGATTGGTACAGCACTTACT 57.579 39.130 0.00 0.00 42.39 2.24
357 358 5.419542 TGATGATTGGTACAGCACTTACTC 58.580 41.667 0.00 0.00 42.39 2.59
358 359 3.845178 TGATTGGTACAGCACTTACTCG 58.155 45.455 0.00 0.00 42.39 4.18
359 360 3.257375 TGATTGGTACAGCACTTACTCGT 59.743 43.478 0.00 0.00 42.39 4.18
360 361 3.293311 TTGGTACAGCACTTACTCGTC 57.707 47.619 0.00 0.00 42.39 4.20
361 362 2.232399 TGGTACAGCACTTACTCGTCA 58.768 47.619 0.00 0.00 0.00 4.35
362 363 2.624364 TGGTACAGCACTTACTCGTCAA 59.376 45.455 0.00 0.00 0.00 3.18
363 364 2.985139 GGTACAGCACTTACTCGTCAAC 59.015 50.000 0.00 0.00 0.00 3.18
364 365 2.882927 ACAGCACTTACTCGTCAACA 57.117 45.000 0.00 0.00 0.00 3.33
365 366 3.386768 ACAGCACTTACTCGTCAACAT 57.613 42.857 0.00 0.00 0.00 2.71
366 367 4.514781 ACAGCACTTACTCGTCAACATA 57.485 40.909 0.00 0.00 0.00 2.29
367 368 4.235360 ACAGCACTTACTCGTCAACATAC 58.765 43.478 0.00 0.00 0.00 2.39
368 369 4.234574 CAGCACTTACTCGTCAACATACA 58.765 43.478 0.00 0.00 0.00 2.29
369 370 4.324669 CAGCACTTACTCGTCAACATACAG 59.675 45.833 0.00 0.00 0.00 2.74
370 371 4.217767 AGCACTTACTCGTCAACATACAGA 59.782 41.667 0.00 0.00 0.00 3.41
371 372 4.559251 GCACTTACTCGTCAACATACAGAG 59.441 45.833 0.00 0.00 35.28 3.35
372 373 4.559251 CACTTACTCGTCAACATACAGAGC 59.441 45.833 0.00 0.00 32.60 4.09
373 374 4.459685 ACTTACTCGTCAACATACAGAGCT 59.540 41.667 0.00 0.00 32.60 4.09
374 375 3.495670 ACTCGTCAACATACAGAGCTC 57.504 47.619 5.27 5.27 32.60 4.09
375 376 2.164624 ACTCGTCAACATACAGAGCTCC 59.835 50.000 10.93 0.00 32.60 4.70
376 377 2.425312 CTCGTCAACATACAGAGCTCCT 59.575 50.000 10.93 0.00 0.00 3.69
377 378 3.617284 TCGTCAACATACAGAGCTCCTA 58.383 45.455 10.93 0.04 0.00 2.94
378 379 3.628032 TCGTCAACATACAGAGCTCCTAG 59.372 47.826 10.93 3.28 0.00 3.02
379 380 3.378742 CGTCAACATACAGAGCTCCTAGT 59.621 47.826 10.93 9.65 0.00 2.57
380 381 4.142359 CGTCAACATACAGAGCTCCTAGTT 60.142 45.833 10.93 5.99 0.00 2.24
381 382 5.066117 CGTCAACATACAGAGCTCCTAGTTA 59.934 44.000 10.93 0.00 0.00 2.24
382 383 6.238786 CGTCAACATACAGAGCTCCTAGTTAT 60.239 42.308 10.93 0.00 0.00 1.89
383 384 6.920758 GTCAACATACAGAGCTCCTAGTTATG 59.079 42.308 10.93 12.02 0.00 1.90
384 385 6.607600 TCAACATACAGAGCTCCTAGTTATGT 59.392 38.462 10.93 12.61 35.19 2.29
385 386 7.124298 TCAACATACAGAGCTCCTAGTTATGTT 59.876 37.037 19.90 19.90 36.23 2.71
386 387 7.425224 ACATACAGAGCTCCTAGTTATGTTT 57.575 36.000 10.93 0.00 33.13 2.83
387 388 7.493367 ACATACAGAGCTCCTAGTTATGTTTC 58.507 38.462 10.93 0.00 33.13 2.78
388 389 7.124298 ACATACAGAGCTCCTAGTTATGTTTCA 59.876 37.037 10.93 0.00 33.13 2.69
389 390 5.971763 ACAGAGCTCCTAGTTATGTTTCAG 58.028 41.667 10.93 0.00 26.09 3.02
390 391 5.482175 ACAGAGCTCCTAGTTATGTTTCAGT 59.518 40.000 10.93 0.00 26.09 3.41
391 392 6.663953 ACAGAGCTCCTAGTTATGTTTCAGTA 59.336 38.462 10.93 0.00 26.09 2.74
392 393 7.343316 ACAGAGCTCCTAGTTATGTTTCAGTAT 59.657 37.037 10.93 0.00 26.09 2.12
393 394 7.651304 CAGAGCTCCTAGTTATGTTTCAGTATG 59.349 40.741 10.93 0.00 37.54 2.39
417 418 9.606631 ATGATTCTTCCACTACTTTATCTTGTC 57.393 33.333 0.00 0.00 0.00 3.18
418 419 8.816894 TGATTCTTCCACTACTTTATCTTGTCT 58.183 33.333 0.00 0.00 0.00 3.41
419 420 9.660180 GATTCTTCCACTACTTTATCTTGTCTT 57.340 33.333 0.00 0.00 0.00 3.01
421 422 9.490379 TTCTTCCACTACTTTATCTTGTCTTTC 57.510 33.333 0.00 0.00 0.00 2.62
422 423 8.871125 TCTTCCACTACTTTATCTTGTCTTTCT 58.129 33.333 0.00 0.00 0.00 2.52
425 426 9.310449 TCCACTACTTTATCTTGTCTTTCTAGT 57.690 33.333 0.00 0.00 0.00 2.57
426 427 9.930693 CCACTACTTTATCTTGTCTTTCTAGTT 57.069 33.333 0.00 0.00 0.00 2.24
453 454 6.338937 AGTTTAGATAGATCGGTTTGTGGTC 58.661 40.000 0.00 0.00 0.00 4.02
484 485 4.472833 AGCTGAAGTCAAGTCCCTTATGAT 59.527 41.667 0.00 0.00 0.00 2.45
489 490 8.089625 TGAAGTCAAGTCCCTTATGATGATAA 57.910 34.615 0.00 0.00 0.00 1.75
495 496 8.328758 TCAAGTCCCTTATGATGATAAAGTGTT 58.671 33.333 0.00 0.00 0.00 3.32
505 506 7.880160 TGATGATAAAGTGTTTATTCCCCAG 57.120 36.000 0.00 0.00 36.04 4.45
509 510 6.661805 TGATAAAGTGTTTATTCCCCAGAACC 59.338 38.462 0.00 0.00 36.04 3.62
528 529 8.646004 CCAGAACCTTCATAGATCTCAGAATAA 58.354 37.037 0.00 0.00 0.00 1.40
533 534 9.132923 ACCTTCATAGATCTCAGAATAACGTTA 57.867 33.333 11.02 11.02 0.00 3.18
540 541 8.864069 AGATCTCAGAATAACGTTACAGATTG 57.136 34.615 10.81 5.61 0.00 2.67
557 558 2.710096 TTGGCTGGCAAGGTATAGTC 57.290 50.000 13.06 0.00 0.00 2.59
569 570 2.621055 AGGTATAGTCGCTCTGAGCAAG 59.379 50.000 27.46 13.56 42.58 4.01
571 572 1.110442 ATAGTCGCTCTGAGCAAGCT 58.890 50.000 27.46 21.73 42.58 3.74
596 597 2.887568 CGTGGCTCGGCAGATGAC 60.888 66.667 0.13 0.00 35.71 3.06
601 602 4.227134 CTCGGCAGATGACCCCCG 62.227 72.222 0.00 0.00 41.97 5.73
607 608 0.249911 GCAGATGACCCCCGTGTATC 60.250 60.000 0.00 0.00 0.00 2.24
613 614 1.732417 GACCCCCGTGTATCGAGGAC 61.732 65.000 0.00 0.00 39.89 3.85
622 623 0.389757 GTATCGAGGACCTCTTGCCC 59.610 60.000 19.39 0.14 0.00 5.36
630 631 2.239907 AGGACCTCTTGCCCAAAGATAC 59.760 50.000 0.00 0.00 44.02 2.24
632 633 3.274288 GACCTCTTGCCCAAAGATACTG 58.726 50.000 0.00 0.00 44.02 2.74
751 760 3.059352 ACTTGAACGAATTAGCCTGCT 57.941 42.857 0.00 0.00 0.00 4.24
752 761 3.412386 ACTTGAACGAATTAGCCTGCTT 58.588 40.909 0.00 0.00 0.00 3.91
791 800 0.808125 ACGTGCTTTCTGTTGTGCAA 59.192 45.000 0.00 0.00 37.17 4.08
879 888 3.057596 CACGAATTACAGGTTGCCATGTT 60.058 43.478 0.00 0.00 0.00 2.71
961 970 0.185901 AGCAAAGCCTCCACCTTTCA 59.814 50.000 0.00 0.00 30.52 2.69
970 979 1.981495 CTCCACCTTTCACTTCCTCCT 59.019 52.381 0.00 0.00 0.00 3.69
1040 1057 2.511452 CCCCAGCCCCACTATCGAG 61.511 68.421 0.00 0.00 0.00 4.04
1048 1065 2.421529 GCCCCACTATCGAGACCATTTT 60.422 50.000 0.00 0.00 0.00 1.82
1056 1073 2.214347 TCGAGACCATTTTTCGTTGCA 58.786 42.857 0.00 0.00 35.90 4.08
1125 1144 1.198713 AGATCGTGCTCAAGGTGGAT 58.801 50.000 0.00 0.00 0.00 3.41
1207 1226 4.556501 CGCATAAACTTGCAGAAACCAAGA 60.557 41.667 8.01 0.00 42.91 3.02
1224 1243 7.513371 AACCAAGAACCGTGTATTTATTTGA 57.487 32.000 0.00 0.00 0.00 2.69
1440 1477 4.572571 TGAAACGCCCAAGCCGGT 62.573 61.111 1.90 0.00 34.57 5.28
1482 1519 4.215742 CGGCCCTGGCAATGCATG 62.216 66.667 7.79 0.00 44.11 4.06
1483 1520 3.078836 GGCCCTGGCAATGCATGT 61.079 61.111 7.79 0.00 44.11 3.21
1660 1698 9.191995 CTTTTTGTCGGTTATTTTTATGAAGCT 57.808 29.630 0.00 0.00 0.00 3.74
1722 1761 2.271800 GTTTCTCTAGGGTGTGATGCG 58.728 52.381 0.00 0.00 0.00 4.73
1723 1762 0.175760 TTCTCTAGGGTGTGATGCGC 59.824 55.000 0.00 0.00 0.00 6.09
1724 1763 0.684479 TCTCTAGGGTGTGATGCGCT 60.684 55.000 9.73 0.00 0.00 5.92
1725 1764 0.176680 CTCTAGGGTGTGATGCGCTT 59.823 55.000 9.73 0.55 0.00 4.68
1726 1765 0.108186 TCTAGGGTGTGATGCGCTTG 60.108 55.000 9.73 0.00 0.00 4.01
1727 1766 0.391661 CTAGGGTGTGATGCGCTTGT 60.392 55.000 9.73 0.00 0.00 3.16
1728 1767 0.899019 TAGGGTGTGATGCGCTTGTA 59.101 50.000 9.73 0.00 0.00 2.41
1729 1768 0.673644 AGGGTGTGATGCGCTTGTAC 60.674 55.000 9.73 4.66 0.00 2.90
1730 1769 0.953471 GGGTGTGATGCGCTTGTACA 60.953 55.000 9.73 7.40 0.00 2.90
1731 1770 1.086696 GGTGTGATGCGCTTGTACAT 58.913 50.000 9.73 0.00 0.00 2.29
1732 1771 1.468520 GGTGTGATGCGCTTGTACATT 59.531 47.619 9.73 0.00 0.00 2.71
1733 1772 2.095263 GGTGTGATGCGCTTGTACATTT 60.095 45.455 9.73 0.00 0.00 2.32
1734 1773 2.910482 GTGTGATGCGCTTGTACATTTG 59.090 45.455 9.73 0.00 0.00 2.32
1735 1774 2.810852 TGTGATGCGCTTGTACATTTGA 59.189 40.909 9.73 0.00 0.00 2.69
1736 1775 3.439825 TGTGATGCGCTTGTACATTTGAT 59.560 39.130 9.73 0.00 0.00 2.57
1737 1776 4.031028 GTGATGCGCTTGTACATTTGATC 58.969 43.478 9.73 0.00 0.00 2.92
1738 1777 3.940852 TGATGCGCTTGTACATTTGATCT 59.059 39.130 9.73 0.00 0.00 2.75
1739 1778 4.034394 TGATGCGCTTGTACATTTGATCTC 59.966 41.667 9.73 0.00 0.00 2.75
1740 1779 3.333804 TGCGCTTGTACATTTGATCTCA 58.666 40.909 9.73 0.00 0.00 3.27
1741 1780 3.750652 TGCGCTTGTACATTTGATCTCAA 59.249 39.130 9.73 0.00 0.00 3.02
1760 1799 2.629639 AAAAATTTGGACGCGGCTAG 57.370 45.000 13.91 0.00 0.00 3.42
1761 1800 0.170339 AAAATTTGGACGCGGCTAGC 59.830 50.000 13.91 6.04 43.95 3.42
1762 1801 0.676782 AAATTTGGACGCGGCTAGCT 60.677 50.000 13.91 0.00 45.59 3.32
1763 1802 0.177141 AATTTGGACGCGGCTAGCTA 59.823 50.000 13.91 0.00 45.59 3.32
1764 1803 0.249489 ATTTGGACGCGGCTAGCTAG 60.249 55.000 13.91 16.84 45.59 3.42
1777 1816 3.959573 CTAGCTAGCATGTTTCCAAGC 57.040 47.619 18.83 0.00 35.56 4.01
1778 1817 2.503895 AGCTAGCATGTTTCCAAGCT 57.496 45.000 18.83 0.00 46.58 3.74
1779 1818 3.634397 AGCTAGCATGTTTCCAAGCTA 57.366 42.857 18.83 0.00 43.40 3.32
1783 1822 3.710209 AGCATGTTTCCAAGCTAGTCT 57.290 42.857 0.00 0.00 43.40 3.24
1784 1823 4.026356 AGCATGTTTCCAAGCTAGTCTT 57.974 40.909 0.00 0.00 43.40 3.01
1785 1824 4.006319 AGCATGTTTCCAAGCTAGTCTTC 58.994 43.478 0.00 0.00 43.40 2.87
1786 1825 3.127721 GCATGTTTCCAAGCTAGTCTTCC 59.872 47.826 0.00 0.00 32.65 3.46
1787 1826 4.583871 CATGTTTCCAAGCTAGTCTTCCT 58.416 43.478 0.00 0.00 31.27 3.36
1788 1827 4.273148 TGTTTCCAAGCTAGTCTTCCTC 57.727 45.455 0.00 0.00 31.27 3.71
1789 1828 3.254892 GTTTCCAAGCTAGTCTTCCTCG 58.745 50.000 0.00 0.00 31.27 4.63
1790 1829 2.509166 TCCAAGCTAGTCTTCCTCGA 57.491 50.000 0.00 0.00 31.27 4.04
1791 1830 2.093106 TCCAAGCTAGTCTTCCTCGAC 58.907 52.381 0.00 0.00 31.27 4.20
1792 1831 1.819288 CCAAGCTAGTCTTCCTCGACA 59.181 52.381 0.00 0.00 36.38 4.35
1793 1832 2.416162 CCAAGCTAGTCTTCCTCGACAC 60.416 54.545 0.00 0.00 36.38 3.67
1794 1833 2.201921 AGCTAGTCTTCCTCGACACA 57.798 50.000 0.00 0.00 36.38 3.72
1795 1834 1.813786 AGCTAGTCTTCCTCGACACAC 59.186 52.381 0.00 0.00 36.38 3.82
1796 1835 1.540267 GCTAGTCTTCCTCGACACACA 59.460 52.381 0.00 0.00 36.38 3.72
1797 1836 2.668834 GCTAGTCTTCCTCGACACACAC 60.669 54.545 0.00 0.00 36.38 3.82
1798 1837 1.399714 AGTCTTCCTCGACACACACA 58.600 50.000 0.00 0.00 36.38 3.72
1799 1838 1.067212 AGTCTTCCTCGACACACACAC 59.933 52.381 0.00 0.00 36.38 3.82
1800 1839 0.387929 TCTTCCTCGACACACACACC 59.612 55.000 0.00 0.00 0.00 4.16
1801 1840 0.389391 CTTCCTCGACACACACACCT 59.611 55.000 0.00 0.00 0.00 4.00
1802 1841 1.611977 CTTCCTCGACACACACACCTA 59.388 52.381 0.00 0.00 0.00 3.08
1803 1842 1.694844 TCCTCGACACACACACCTAA 58.305 50.000 0.00 0.00 0.00 2.69
1804 1843 1.611977 TCCTCGACACACACACCTAAG 59.388 52.381 0.00 0.00 0.00 2.18
1805 1844 1.611977 CCTCGACACACACACCTAAGA 59.388 52.381 0.00 0.00 0.00 2.10
1806 1845 2.351835 CCTCGACACACACACCTAAGAG 60.352 54.545 0.00 0.00 0.00 2.85
1807 1846 1.000607 TCGACACACACACCTAAGAGC 60.001 52.381 0.00 0.00 0.00 4.09
1810 1849 2.544267 GACACACACACCTAAGAGCAAC 59.456 50.000 0.00 0.00 0.00 4.17
1813 1852 2.434336 ACACACACCTAAGAGCAACTCA 59.566 45.455 0.00 0.00 32.06 3.41
2018 2059 1.000955 CTTCACGGTGTAGAAGTGGCT 59.999 52.381 8.90 0.00 37.16 4.75
2047 2088 2.418334 CCCTAGCCAAAACGTAGACCTC 60.418 54.545 0.00 0.00 0.00 3.85
2060 2101 1.298488 GACCTCGCGAAGACGATCC 60.298 63.158 12.53 0.00 42.02 3.36
2073 2114 0.459237 ACGATCCTGAGCTTGCTTCG 60.459 55.000 10.77 10.77 0.00 3.79
2276 2317 2.730382 TGAACCGAGTCTACTATGGCA 58.270 47.619 0.00 0.00 0.00 4.92
2402 2443 4.617959 CATCCTCCGTGACGTTACATATT 58.382 43.478 11.32 0.00 0.00 1.28
2561 2605 2.360475 GGGCCCTGACACAGCTTC 60.360 66.667 17.04 0.00 0.00 3.86
2562 2606 2.753029 GGCCCTGACACAGCTTCT 59.247 61.111 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.234615 ATAACAGGTGGCGTGCACAC 61.235 55.000 18.64 7.05 38.10 3.82
2 3 0.673644 AGATAACAGGTGGCGTGCAC 60.674 55.000 6.82 6.82 0.00 4.57
4 5 1.130561 GAAAGATAACAGGTGGCGTGC 59.869 52.381 0.00 0.00 0.00 5.34
6 7 2.038557 ACTGAAAGATAACAGGTGGCGT 59.961 45.455 0.00 0.00 38.30 5.68
7 8 2.699954 ACTGAAAGATAACAGGTGGCG 58.300 47.619 0.00 0.00 38.30 5.69
8 9 5.453567 AAAACTGAAAGATAACAGGTGGC 57.546 39.130 0.00 0.00 38.30 5.01
9 10 7.277174 AGAAAAACTGAAAGATAACAGGTGG 57.723 36.000 0.00 0.00 38.30 4.61
10 11 8.405531 TGAAGAAAAACTGAAAGATAACAGGTG 58.594 33.333 0.00 0.00 38.30 4.00
11 12 8.519799 TGAAGAAAAACTGAAAGATAACAGGT 57.480 30.769 0.00 0.00 38.30 4.00
12 13 9.455847 CTTGAAGAAAAACTGAAAGATAACAGG 57.544 33.333 0.00 0.00 38.30 4.00
13 14 8.962111 GCTTGAAGAAAAACTGAAAGATAACAG 58.038 33.333 0.00 0.00 37.43 3.16
14 15 8.686334 AGCTTGAAGAAAAACTGAAAGATAACA 58.314 29.630 0.00 0.00 37.43 2.41
15 16 9.521503 AAGCTTGAAGAAAAACTGAAAGATAAC 57.478 29.630 0.00 0.00 37.43 1.89
17 18 9.736023 GAAAGCTTGAAGAAAAACTGAAAGATA 57.264 29.630 0.00 0.00 37.43 1.98
18 19 7.433425 CGAAAGCTTGAAGAAAAACTGAAAGAT 59.567 33.333 0.00 0.00 37.43 2.40
19 20 6.747280 CGAAAGCTTGAAGAAAAACTGAAAGA 59.253 34.615 0.00 0.00 37.43 2.52
20 21 6.915996 CGAAAGCTTGAAGAAAAACTGAAAG 58.084 36.000 0.00 0.00 42.29 2.62
21 22 6.869421 CGAAAGCTTGAAGAAAAACTGAAA 57.131 33.333 0.00 0.00 0.00 2.69
34 35 9.827422 AGTACTGATACAAAGGCGAAAGCTTGA 62.827 40.741 0.00 0.00 45.11 3.02
35 36 7.778256 AGTACTGATACAAAGGCGAAAGCTTG 61.778 42.308 0.00 0.00 45.11 4.01
36 37 5.800239 AGTACTGATACAAAGGCGAAAGCTT 60.800 40.000 0.00 0.00 45.11 3.74
37 38 4.322801 AGTACTGATACAAAGGCGAAAGCT 60.323 41.667 0.00 0.00 45.11 3.74
38 39 3.933332 AGTACTGATACAAAGGCGAAAGC 59.067 43.478 0.00 0.00 45.07 3.51
39 40 4.929808 ACAGTACTGATACAAAGGCGAAAG 59.070 41.667 29.30 0.00 33.30 2.62
40 41 4.890088 ACAGTACTGATACAAAGGCGAAA 58.110 39.130 29.30 0.00 33.30 3.46
41 42 4.530710 ACAGTACTGATACAAAGGCGAA 57.469 40.909 29.30 0.00 33.30 4.70
42 43 4.242475 CAACAGTACTGATACAAAGGCGA 58.758 43.478 29.30 0.00 33.30 5.54
43 44 3.994392 ACAACAGTACTGATACAAAGGCG 59.006 43.478 29.30 5.66 33.30 5.52
44 45 6.258068 GGATACAACAGTACTGATACAAAGGC 59.742 42.308 29.30 9.25 33.30 4.35
45 46 7.556844 AGGATACAACAGTACTGATACAAAGG 58.443 38.462 29.30 7.08 41.41 3.11
46 47 9.737427 CTAGGATACAACAGTACTGATACAAAG 57.263 37.037 29.30 10.29 41.41 2.77
47 48 8.195436 GCTAGGATACAACAGTACTGATACAAA 58.805 37.037 29.30 9.47 41.41 2.83
48 49 7.560262 AGCTAGGATACAACAGTACTGATACAA 59.440 37.037 29.30 10.49 41.41 2.41
49 50 7.013369 CAGCTAGGATACAACAGTACTGATACA 59.987 40.741 29.30 11.54 41.41 2.29
50 51 7.364200 CAGCTAGGATACAACAGTACTGATAC 58.636 42.308 29.30 12.70 41.41 2.24
51 52 6.490381 CCAGCTAGGATACAACAGTACTGATA 59.510 42.308 29.30 17.15 41.22 2.15
52 53 5.303078 CCAGCTAGGATACAACAGTACTGAT 59.697 44.000 29.30 15.34 41.22 2.90
53 54 4.645136 CCAGCTAGGATACAACAGTACTGA 59.355 45.833 29.30 7.19 41.22 3.41
54 55 4.402793 ACCAGCTAGGATACAACAGTACTG 59.597 45.833 21.44 21.44 41.22 2.74
55 56 4.611367 ACCAGCTAGGATACAACAGTACT 58.389 43.478 8.91 0.00 41.22 2.73
56 57 5.105473 TCAACCAGCTAGGATACAACAGTAC 60.105 44.000 8.91 0.00 41.22 2.73
57 58 5.020795 TCAACCAGCTAGGATACAACAGTA 58.979 41.667 8.91 0.00 41.22 2.74
58 59 3.838317 TCAACCAGCTAGGATACAACAGT 59.162 43.478 8.91 0.00 41.22 3.55
59 60 4.471904 TCAACCAGCTAGGATACAACAG 57.528 45.455 8.91 0.00 41.22 3.16
60 61 4.384098 CCATCAACCAGCTAGGATACAACA 60.384 45.833 8.91 0.00 41.22 3.33
61 62 4.130118 CCATCAACCAGCTAGGATACAAC 58.870 47.826 8.91 0.00 41.22 3.32
62 63 3.433598 GCCATCAACCAGCTAGGATACAA 60.434 47.826 8.91 0.00 41.22 2.41
63 64 2.104792 GCCATCAACCAGCTAGGATACA 59.895 50.000 8.91 0.00 41.22 2.29
64 65 2.370189 AGCCATCAACCAGCTAGGATAC 59.630 50.000 8.91 0.00 41.22 2.24
65 66 2.694397 AGCCATCAACCAGCTAGGATA 58.306 47.619 8.91 0.00 41.22 2.59
66 67 1.516110 AGCCATCAACCAGCTAGGAT 58.484 50.000 8.91 0.00 41.22 3.24
67 68 1.210478 GAAGCCATCAACCAGCTAGGA 59.790 52.381 8.91 0.00 41.22 2.94
68 69 1.065199 TGAAGCCATCAACCAGCTAGG 60.065 52.381 0.00 0.00 35.30 3.02
69 70 2.408271 TGAAGCCATCAACCAGCTAG 57.592 50.000 0.00 0.00 35.30 3.42
70 71 3.370840 AATGAAGCCATCAACCAGCTA 57.629 42.857 0.00 0.00 42.54 3.32
71 72 2.226962 AATGAAGCCATCAACCAGCT 57.773 45.000 0.00 0.00 42.54 4.24
72 73 4.660789 ATTAATGAAGCCATCAACCAGC 57.339 40.909 0.00 0.00 42.54 4.85
73 74 9.090692 CTTTAAATTAATGAAGCCATCAACCAG 57.909 33.333 0.00 0.00 42.54 4.00
74 75 8.592809 ACTTTAAATTAATGAAGCCATCAACCA 58.407 29.630 5.76 0.00 42.54 3.67
75 76 9.087424 GACTTTAAATTAATGAAGCCATCAACC 57.913 33.333 5.76 0.00 42.54 3.77
76 77 9.638239 TGACTTTAAATTAATGAAGCCATCAAC 57.362 29.630 5.76 0.00 42.54 3.18
77 78 9.859427 CTGACTTTAAATTAATGAAGCCATCAA 57.141 29.630 5.76 0.00 42.54 2.57
78 79 8.469200 CCTGACTTTAAATTAATGAAGCCATCA 58.531 33.333 5.76 0.00 43.67 3.07
79 80 7.436376 GCCTGACTTTAAATTAATGAAGCCATC 59.564 37.037 5.76 0.00 31.40 3.51
80 81 7.124750 AGCCTGACTTTAAATTAATGAAGCCAT 59.875 33.333 5.76 0.00 33.66 4.40
81 82 6.437162 AGCCTGACTTTAAATTAATGAAGCCA 59.563 34.615 5.76 0.00 0.00 4.75
82 83 6.867550 AGCCTGACTTTAAATTAATGAAGCC 58.132 36.000 5.76 0.00 0.00 4.35
83 84 8.763049 AAAGCCTGACTTTAAATTAATGAAGC 57.237 30.769 5.76 3.49 46.95 3.86
97 98 6.538263 AGAGAAAAGACATAAAGCCTGACTT 58.462 36.000 0.00 0.00 41.70 3.01
98 99 6.120507 AGAGAAAAGACATAAAGCCTGACT 57.879 37.500 0.00 0.00 0.00 3.41
99 100 7.907214 TTAGAGAAAAGACATAAAGCCTGAC 57.093 36.000 0.00 0.00 0.00 3.51
100 101 8.918202 TTTTAGAGAAAAGACATAAAGCCTGA 57.082 30.769 0.00 0.00 30.89 3.86
101 102 9.617975 CTTTTTAGAGAAAAGACATAAAGCCTG 57.382 33.333 5.54 0.00 39.04 4.85
102 103 9.574516 TCTTTTTAGAGAAAAGACATAAAGCCT 57.425 29.630 9.24 0.00 40.25 4.58
115 116 9.003658 GGTGAGTCATTGATCTTTTTAGAGAAA 57.996 33.333 0.00 0.00 0.00 2.52
116 117 7.331934 CGGTGAGTCATTGATCTTTTTAGAGAA 59.668 37.037 0.00 0.00 0.00 2.87
117 118 6.813649 CGGTGAGTCATTGATCTTTTTAGAGA 59.186 38.462 0.00 0.00 0.00 3.10
118 119 6.591834 ACGGTGAGTCATTGATCTTTTTAGAG 59.408 38.462 0.00 0.00 0.00 2.43
119 120 6.464222 ACGGTGAGTCATTGATCTTTTTAGA 58.536 36.000 0.00 0.00 0.00 2.10
120 121 6.727824 ACGGTGAGTCATTGATCTTTTTAG 57.272 37.500 0.00 0.00 0.00 1.85
121 122 6.309494 CGTACGGTGAGTCATTGATCTTTTTA 59.691 38.462 7.57 0.00 0.00 1.52
122 123 5.120208 CGTACGGTGAGTCATTGATCTTTTT 59.880 40.000 7.57 0.00 0.00 1.94
123 124 4.625742 CGTACGGTGAGTCATTGATCTTTT 59.374 41.667 7.57 0.00 0.00 2.27
124 125 4.174009 CGTACGGTGAGTCATTGATCTTT 58.826 43.478 7.57 0.00 0.00 2.52
125 126 3.770666 CGTACGGTGAGTCATTGATCTT 58.229 45.455 7.57 0.00 0.00 2.40
126 127 2.479730 GCGTACGGTGAGTCATTGATCT 60.480 50.000 18.39 0.00 0.00 2.75
127 128 1.852895 GCGTACGGTGAGTCATTGATC 59.147 52.381 18.39 0.00 0.00 2.92
128 129 1.470979 GGCGTACGGTGAGTCATTGAT 60.471 52.381 18.39 0.00 0.00 2.57
129 130 0.108992 GGCGTACGGTGAGTCATTGA 60.109 55.000 18.39 0.00 0.00 2.57
130 131 1.082117 GGGCGTACGGTGAGTCATTG 61.082 60.000 18.39 0.00 0.00 2.82
131 132 1.217244 GGGCGTACGGTGAGTCATT 59.783 57.895 18.39 0.00 0.00 2.57
132 133 2.718073 GGGGCGTACGGTGAGTCAT 61.718 63.158 18.39 0.00 0.00 3.06
133 134 3.376078 GGGGCGTACGGTGAGTCA 61.376 66.667 18.39 0.00 0.00 3.41
134 135 2.830704 CTTGGGGCGTACGGTGAGTC 62.831 65.000 18.39 0.00 0.00 3.36
135 136 2.918802 TTGGGGCGTACGGTGAGT 60.919 61.111 18.39 0.00 0.00 3.41
136 137 2.125673 CTTGGGGCGTACGGTGAG 60.126 66.667 18.39 0.00 0.00 3.51
137 138 2.042404 AAACTTGGGGCGTACGGTGA 62.042 55.000 18.39 0.00 0.00 4.02
138 139 1.167781 AAAACTTGGGGCGTACGGTG 61.168 55.000 18.39 0.00 0.00 4.94
139 140 0.396060 TAAAACTTGGGGCGTACGGT 59.604 50.000 18.39 1.73 0.00 4.83
140 141 0.798159 GTAAAACTTGGGGCGTACGG 59.202 55.000 18.39 1.02 0.00 4.02
141 142 0.798159 GGTAAAACTTGGGGCGTACG 59.202 55.000 11.84 11.84 0.00 3.67
142 143 2.189594 AGGTAAAACTTGGGGCGTAC 57.810 50.000 0.00 0.00 0.00 3.67
143 144 2.506444 CAAGGTAAAACTTGGGGCGTA 58.494 47.619 0.00 0.00 43.14 4.42
144 145 1.324383 CAAGGTAAAACTTGGGGCGT 58.676 50.000 0.00 0.00 43.14 5.68
145 146 0.038618 GCAAGGTAAAACTTGGGGCG 60.039 55.000 9.67 0.00 46.10 6.13
146 147 1.338107 AGCAAGGTAAAACTTGGGGC 58.662 50.000 9.67 0.00 46.10 5.80
147 148 2.492088 GCTAGCAAGGTAAAACTTGGGG 59.508 50.000 10.63 0.00 46.10 4.96
148 149 3.057526 GTGCTAGCAAGGTAAAACTTGGG 60.058 47.826 21.29 0.00 46.10 4.12
149 150 3.057526 GGTGCTAGCAAGGTAAAACTTGG 60.058 47.826 21.29 0.00 46.10 3.61
151 152 4.100279 AGGTGCTAGCAAGGTAAAACTT 57.900 40.909 21.29 0.00 0.00 2.66
152 153 3.790089 AGGTGCTAGCAAGGTAAAACT 57.210 42.857 21.29 0.00 0.00 2.66
153 154 3.818773 TGAAGGTGCTAGCAAGGTAAAAC 59.181 43.478 21.29 3.87 0.00 2.43
154 155 4.093472 TGAAGGTGCTAGCAAGGTAAAA 57.907 40.909 21.29 0.00 0.00 1.52
155 156 3.780804 TGAAGGTGCTAGCAAGGTAAA 57.219 42.857 21.29 0.74 0.00 2.01
156 157 3.609853 CATGAAGGTGCTAGCAAGGTAA 58.390 45.455 21.29 6.04 0.00 2.85
157 158 2.680805 GCATGAAGGTGCTAGCAAGGTA 60.681 50.000 21.29 5.69 41.82 3.08
158 159 1.952367 GCATGAAGGTGCTAGCAAGGT 60.952 52.381 21.29 7.02 41.82 3.50
159 160 0.737219 GCATGAAGGTGCTAGCAAGG 59.263 55.000 21.29 6.29 41.82 3.61
160 161 1.456296 TGCATGAAGGTGCTAGCAAG 58.544 50.000 21.29 4.80 45.27 4.01
161 162 1.908344 TTGCATGAAGGTGCTAGCAA 58.092 45.000 21.29 3.23 45.27 3.91
162 163 2.133281 ATTGCATGAAGGTGCTAGCA 57.867 45.000 14.93 14.93 45.27 3.49
163 164 3.817084 TCATATTGCATGAAGGTGCTAGC 59.183 43.478 8.10 8.10 45.27 3.42
164 165 5.049612 CAGTCATATTGCATGAAGGTGCTAG 60.050 44.000 0.00 0.00 45.27 3.42
165 166 4.818005 CAGTCATATTGCATGAAGGTGCTA 59.182 41.667 0.00 0.00 45.27 3.49
166 167 3.630769 CAGTCATATTGCATGAAGGTGCT 59.369 43.478 0.00 0.00 45.27 4.40
167 168 3.794475 GCAGTCATATTGCATGAAGGTGC 60.794 47.826 0.00 0.00 45.25 5.01
168 169 3.379057 TGCAGTCATATTGCATGAAGGTG 59.621 43.478 0.00 0.00 45.89 4.00
169 170 3.623703 TGCAGTCATATTGCATGAAGGT 58.376 40.909 0.00 0.00 45.89 3.50
177 178 2.420022 ACCGAAAGTGCAGTCATATTGC 59.580 45.455 0.00 0.00 41.86 3.56
178 179 5.109210 TCTACCGAAAGTGCAGTCATATTG 58.891 41.667 0.00 0.00 0.00 1.90
179 180 5.339008 TCTACCGAAAGTGCAGTCATATT 57.661 39.130 0.00 0.00 0.00 1.28
180 181 5.292765 CATCTACCGAAAGTGCAGTCATAT 58.707 41.667 0.00 0.00 0.00 1.78
181 182 4.441495 CCATCTACCGAAAGTGCAGTCATA 60.441 45.833 0.00 0.00 0.00 2.15
182 183 3.525537 CATCTACCGAAAGTGCAGTCAT 58.474 45.455 0.00 0.00 0.00 3.06
183 184 2.353704 CCATCTACCGAAAGTGCAGTCA 60.354 50.000 0.00 0.00 0.00 3.41
184 185 2.094182 TCCATCTACCGAAAGTGCAGTC 60.094 50.000 0.00 0.00 0.00 3.51
185 186 1.899814 TCCATCTACCGAAAGTGCAGT 59.100 47.619 0.00 0.00 0.00 4.40
186 187 2.672961 TCCATCTACCGAAAGTGCAG 57.327 50.000 0.00 0.00 0.00 4.41
187 188 2.158957 GGATCCATCTACCGAAAGTGCA 60.159 50.000 6.95 0.00 0.00 4.57
188 189 2.103263 AGGATCCATCTACCGAAAGTGC 59.897 50.000 15.82 0.00 0.00 4.40
189 190 4.408182 AAGGATCCATCTACCGAAAGTG 57.592 45.455 15.82 0.00 0.00 3.16
190 191 5.451520 CGTAAAGGATCCATCTACCGAAAGT 60.452 44.000 15.82 0.00 0.00 2.66
191 192 4.982916 CGTAAAGGATCCATCTACCGAAAG 59.017 45.833 15.82 0.00 0.00 2.62
192 193 4.202182 CCGTAAAGGATCCATCTACCGAAA 60.202 45.833 15.82 0.00 45.00 3.46
193 194 3.319972 CCGTAAAGGATCCATCTACCGAA 59.680 47.826 15.82 0.00 45.00 4.30
194 195 2.889045 CCGTAAAGGATCCATCTACCGA 59.111 50.000 15.82 0.00 45.00 4.69
195 196 2.889045 TCCGTAAAGGATCCATCTACCG 59.111 50.000 15.82 7.95 45.98 4.02
204 205 7.914079 GTGACATCACCCTCCGTAAAGGATC 62.914 52.000 0.18 0.00 43.72 3.36
205 206 6.195141 GTGACATCACCCTCCGTAAAGGAT 62.195 50.000 0.18 0.00 43.72 3.24
206 207 4.939474 GTGACATCACCCTCCGTAAAGGA 61.939 52.174 0.18 0.00 43.08 3.36
207 208 1.553248 TGACATCACCCTCCGTAAAGG 59.447 52.381 0.00 0.00 42.97 3.11
208 209 2.618053 GTGACATCACCCTCCGTAAAG 58.382 52.381 0.18 0.00 40.85 1.85
209 210 1.067425 CGTGACATCACCCTCCGTAAA 60.067 52.381 6.44 0.00 43.66 2.01
210 211 0.528924 CGTGACATCACCCTCCGTAA 59.471 55.000 6.44 0.00 43.66 3.18
211 212 1.317431 CCGTGACATCACCCTCCGTA 61.317 60.000 6.44 0.00 43.66 4.02
212 213 2.646175 CCGTGACATCACCCTCCGT 61.646 63.158 6.44 0.00 43.66 4.69
213 214 2.184322 CCGTGACATCACCCTCCG 59.816 66.667 6.44 0.00 43.66 4.63
214 215 2.584608 CCCGTGACATCACCCTCC 59.415 66.667 6.44 0.00 43.66 4.30
215 216 2.584608 CCCCGTGACATCACCCTC 59.415 66.667 6.44 0.00 43.66 4.30
216 217 3.717294 GCCCCGTGACATCACCCT 61.717 66.667 6.44 0.00 43.66 4.34
219 220 3.894547 AACCGCCCCGTGACATCAC 62.895 63.158 1.70 1.70 43.15 3.06
220 221 3.632080 AACCGCCCCGTGACATCA 61.632 61.111 0.00 0.00 0.00 3.07
221 222 3.124921 CAACCGCCCCGTGACATC 61.125 66.667 0.00 0.00 0.00 3.06
222 223 4.715523 CCAACCGCCCCGTGACAT 62.716 66.667 0.00 0.00 0.00 3.06
229 230 4.815108 GGACATCCCAACCGCCCC 62.815 72.222 0.00 0.00 34.14 5.80
230 231 2.372074 TAGGACATCCCAACCGCCC 61.372 63.158 0.00 0.00 37.41 6.13
231 232 1.153229 GTAGGACATCCCAACCGCC 60.153 63.158 0.00 0.00 37.41 6.13
232 233 1.520787 CGTAGGACATCCCAACCGC 60.521 63.158 0.00 0.00 37.41 5.68
233 234 0.179119 GTCGTAGGACATCCCAACCG 60.179 60.000 10.63 0.00 42.91 4.44
234 235 0.179119 CGTCGTAGGACATCCCAACC 60.179 60.000 15.36 0.00 43.61 3.77
235 236 0.813184 TCGTCGTAGGACATCCCAAC 59.187 55.000 15.36 0.00 43.61 3.77
236 237 0.813184 GTCGTCGTAGGACATCCCAA 59.187 55.000 15.36 0.00 43.61 4.12
237 238 0.322726 TGTCGTCGTAGGACATCCCA 60.323 55.000 15.36 3.48 43.61 4.37
238 239 1.030457 ATGTCGTCGTAGGACATCCC 58.970 55.000 15.36 1.11 46.94 3.85
239 240 1.674441 TCATGTCGTCGTAGGACATCC 59.326 52.381 15.36 3.34 46.94 3.51
240 241 3.300857 CATCATGTCGTCGTAGGACATC 58.699 50.000 15.36 7.92 46.94 3.06
242 243 1.404035 CCATCATGTCGTCGTAGGACA 59.596 52.381 15.36 11.05 45.47 4.02
243 244 1.404391 ACCATCATGTCGTCGTAGGAC 59.596 52.381 5.47 5.47 39.89 3.85
244 245 1.758936 ACCATCATGTCGTCGTAGGA 58.241 50.000 0.00 0.00 0.00 2.94
245 246 2.159296 TGAACCATCATGTCGTCGTAGG 60.159 50.000 0.00 0.00 0.00 3.18
246 247 3.108881 CTGAACCATCATGTCGTCGTAG 58.891 50.000 0.00 0.00 34.37 3.51
247 248 2.490509 ACTGAACCATCATGTCGTCGTA 59.509 45.455 0.00 0.00 34.37 3.43
248 249 1.272490 ACTGAACCATCATGTCGTCGT 59.728 47.619 0.00 0.00 34.37 4.34
249 250 1.920574 GACTGAACCATCATGTCGTCG 59.079 52.381 0.00 0.00 34.37 5.12
250 251 2.959516 TGACTGAACCATCATGTCGTC 58.040 47.619 0.00 0.00 36.93 4.20
251 252 3.616956 ATGACTGAACCATCATGTCGT 57.383 42.857 0.00 0.00 36.93 4.34
252 253 4.952262 AAATGACTGAACCATCATGTCG 57.048 40.909 0.00 0.00 36.93 4.35
253 254 6.506500 AGAAAATGACTGAACCATCATGTC 57.493 37.500 0.00 0.00 35.71 3.06
254 255 5.122869 CGAGAAAATGACTGAACCATCATGT 59.877 40.000 0.00 0.00 35.71 3.21
255 256 5.448225 CCGAGAAAATGACTGAACCATCATG 60.448 44.000 0.00 0.00 35.71 3.07
256 257 4.637534 CCGAGAAAATGACTGAACCATCAT 59.362 41.667 0.00 0.00 37.14 2.45
257 258 4.002982 CCGAGAAAATGACTGAACCATCA 58.997 43.478 0.00 0.00 0.00 3.07
258 259 3.181506 GCCGAGAAAATGACTGAACCATC 60.182 47.826 0.00 0.00 0.00 3.51
259 260 2.749621 GCCGAGAAAATGACTGAACCAT 59.250 45.455 0.00 0.00 0.00 3.55
260 261 2.151202 GCCGAGAAAATGACTGAACCA 58.849 47.619 0.00 0.00 0.00 3.67
261 262 1.128692 CGCCGAGAAAATGACTGAACC 59.871 52.381 0.00 0.00 0.00 3.62
262 263 1.798813 ACGCCGAGAAAATGACTGAAC 59.201 47.619 0.00 0.00 0.00 3.18
263 264 2.163818 ACGCCGAGAAAATGACTGAA 57.836 45.000 0.00 0.00 0.00 3.02
264 265 3.444916 GATACGCCGAGAAAATGACTGA 58.555 45.455 0.00 0.00 0.00 3.41
265 266 2.216488 CGATACGCCGAGAAAATGACTG 59.784 50.000 0.00 0.00 0.00 3.51
266 267 2.460918 CGATACGCCGAGAAAATGACT 58.539 47.619 0.00 0.00 0.00 3.41
267 268 2.905260 CGATACGCCGAGAAAATGAC 57.095 50.000 0.00 0.00 0.00 3.06
280 281 6.129009 ACCGCAGTTAAATAAATAGCGATACG 60.129 38.462 14.29 0.00 45.78 3.06
281 282 7.007697 CACCGCAGTTAAATAAATAGCGATAC 58.992 38.462 14.29 0.00 45.78 2.24
282 283 6.924612 TCACCGCAGTTAAATAAATAGCGATA 59.075 34.615 14.29 0.00 45.78 2.92
283 284 5.756347 TCACCGCAGTTAAATAAATAGCGAT 59.244 36.000 14.29 0.00 45.78 4.58
284 285 5.005971 GTCACCGCAGTTAAATAAATAGCGA 59.994 40.000 14.29 0.00 45.78 4.93
285 286 5.195379 GTCACCGCAGTTAAATAAATAGCG 58.805 41.667 0.00 0.00 42.93 4.26
286 287 5.195379 CGTCACCGCAGTTAAATAAATAGC 58.805 41.667 0.00 0.00 0.00 2.97
302 303 0.730834 CTGTCTCAAGAGCGTCACCG 60.731 60.000 0.00 0.00 37.07 4.94
303 304 0.598562 TCTGTCTCAAGAGCGTCACC 59.401 55.000 0.00 0.00 0.00 4.02
304 305 1.537638 TCTCTGTCTCAAGAGCGTCAC 59.462 52.381 0.00 0.00 42.95 3.67
305 306 1.897560 TCTCTGTCTCAAGAGCGTCA 58.102 50.000 0.00 0.00 42.95 4.35
306 307 3.119673 TGAATCTCTGTCTCAAGAGCGTC 60.120 47.826 0.00 0.00 42.95 5.19
307 308 2.822561 TGAATCTCTGTCTCAAGAGCGT 59.177 45.455 0.00 0.00 42.95 5.07
308 309 3.500558 TGAATCTCTGTCTCAAGAGCG 57.499 47.619 0.00 0.00 42.95 5.03
309 310 3.556775 GCATGAATCTCTGTCTCAAGAGC 59.443 47.826 0.00 0.00 42.95 4.09
310 311 4.756502 TGCATGAATCTCTGTCTCAAGAG 58.243 43.478 0.00 0.00 44.34 2.85
311 312 4.813750 TGCATGAATCTCTGTCTCAAGA 57.186 40.909 0.00 0.00 0.00 3.02
312 313 5.585047 TCAATGCATGAATCTCTGTCTCAAG 59.415 40.000 0.00 0.00 34.30 3.02
313 314 5.493809 TCAATGCATGAATCTCTGTCTCAA 58.506 37.500 0.00 0.00 34.30 3.02
314 315 5.093849 TCAATGCATGAATCTCTGTCTCA 57.906 39.130 0.00 0.00 34.30 3.27
315 316 5.758784 TCATCAATGCATGAATCTCTGTCTC 59.241 40.000 0.00 0.00 42.54 3.36
316 317 5.681639 TCATCAATGCATGAATCTCTGTCT 58.318 37.500 0.00 0.00 42.54 3.41
317 318 6.561737 ATCATCAATGCATGAATCTCTGTC 57.438 37.500 0.00 0.00 42.54 3.51
318 319 6.239036 CCAATCATCAATGCATGAATCTCTGT 60.239 38.462 0.00 0.00 42.54 3.41
319 320 6.152379 CCAATCATCAATGCATGAATCTCTG 58.848 40.000 0.00 0.00 42.54 3.35
320 321 5.833667 ACCAATCATCAATGCATGAATCTCT 59.166 36.000 0.00 0.00 42.54 3.10
321 322 6.085555 ACCAATCATCAATGCATGAATCTC 57.914 37.500 0.00 0.00 42.54 2.75
322 323 6.548251 TGTACCAATCATCAATGCATGAATCT 59.452 34.615 0.00 0.00 42.54 2.40
323 324 6.741109 TGTACCAATCATCAATGCATGAATC 58.259 36.000 0.00 0.00 42.54 2.52
324 325 6.718522 TGTACCAATCATCAATGCATGAAT 57.281 33.333 0.00 0.00 42.54 2.57
325 326 5.450826 GCTGTACCAATCATCAATGCATGAA 60.451 40.000 0.00 0.00 42.54 2.57
326 327 4.037089 GCTGTACCAATCATCAATGCATGA 59.963 41.667 0.00 0.03 43.67 3.07
327 328 4.202070 TGCTGTACCAATCATCAATGCATG 60.202 41.667 0.00 0.00 0.00 4.06
328 329 3.955551 TGCTGTACCAATCATCAATGCAT 59.044 39.130 0.00 0.00 0.00 3.96
329 330 3.129113 GTGCTGTACCAATCATCAATGCA 59.871 43.478 0.00 0.00 0.00 3.96
330 331 3.379372 AGTGCTGTACCAATCATCAATGC 59.621 43.478 0.00 0.00 0.00 3.56
331 332 5.571784 AAGTGCTGTACCAATCATCAATG 57.428 39.130 0.00 0.00 0.00 2.82
332 333 6.418101 AGTAAGTGCTGTACCAATCATCAAT 58.582 36.000 0.00 0.00 0.00 2.57
333 334 5.804639 AGTAAGTGCTGTACCAATCATCAA 58.195 37.500 0.00 0.00 0.00 2.57
334 335 5.419542 GAGTAAGTGCTGTACCAATCATCA 58.580 41.667 0.00 0.00 0.00 3.07
335 336 4.504461 CGAGTAAGTGCTGTACCAATCATC 59.496 45.833 0.00 0.00 0.00 2.92
336 337 4.081642 ACGAGTAAGTGCTGTACCAATCAT 60.082 41.667 0.00 0.00 0.00 2.45
337 338 3.257375 ACGAGTAAGTGCTGTACCAATCA 59.743 43.478 0.00 0.00 0.00 2.57
338 339 3.846360 ACGAGTAAGTGCTGTACCAATC 58.154 45.455 0.00 0.00 0.00 2.67
339 340 3.257375 TGACGAGTAAGTGCTGTACCAAT 59.743 43.478 0.00 0.00 0.00 3.16
340 341 2.624364 TGACGAGTAAGTGCTGTACCAA 59.376 45.455 0.00 0.00 0.00 3.67
341 342 2.232399 TGACGAGTAAGTGCTGTACCA 58.768 47.619 0.00 0.00 0.00 3.25
342 343 2.985139 GTTGACGAGTAAGTGCTGTACC 59.015 50.000 0.00 0.00 0.00 3.34
343 344 3.635331 TGTTGACGAGTAAGTGCTGTAC 58.365 45.455 0.00 0.00 0.00 2.90
344 345 3.994204 TGTTGACGAGTAAGTGCTGTA 57.006 42.857 0.00 0.00 0.00 2.74
345 346 2.882927 TGTTGACGAGTAAGTGCTGT 57.117 45.000 0.00 0.00 0.00 4.40
346 347 4.234574 TGTATGTTGACGAGTAAGTGCTG 58.765 43.478 0.00 0.00 0.00 4.41
347 348 4.217767 TCTGTATGTTGACGAGTAAGTGCT 59.782 41.667 0.00 0.00 0.00 4.40
348 349 4.482386 TCTGTATGTTGACGAGTAAGTGC 58.518 43.478 0.00 0.00 0.00 4.40
349 350 4.559251 GCTCTGTATGTTGACGAGTAAGTG 59.441 45.833 0.00 0.00 0.00 3.16
350 351 4.459685 AGCTCTGTATGTTGACGAGTAAGT 59.540 41.667 0.00 0.00 0.00 2.24
351 352 4.987832 AGCTCTGTATGTTGACGAGTAAG 58.012 43.478 0.00 0.00 0.00 2.34
352 353 4.142447 GGAGCTCTGTATGTTGACGAGTAA 60.142 45.833 14.64 0.00 0.00 2.24
353 354 3.377485 GGAGCTCTGTATGTTGACGAGTA 59.623 47.826 14.64 0.00 0.00 2.59
354 355 2.164624 GGAGCTCTGTATGTTGACGAGT 59.835 50.000 14.64 0.00 0.00 4.18
355 356 2.425312 AGGAGCTCTGTATGTTGACGAG 59.575 50.000 14.64 0.00 0.00 4.18
356 357 2.447443 AGGAGCTCTGTATGTTGACGA 58.553 47.619 14.64 0.00 0.00 4.20
357 358 2.949451 AGGAGCTCTGTATGTTGACG 57.051 50.000 14.64 0.00 0.00 4.35
358 359 4.993029 ACTAGGAGCTCTGTATGTTGAC 57.007 45.455 14.64 0.00 0.00 3.18
359 360 6.607600 ACATAACTAGGAGCTCTGTATGTTGA 59.392 38.462 14.64 3.15 31.26 3.18
360 361 6.810911 ACATAACTAGGAGCTCTGTATGTTG 58.189 40.000 14.64 7.31 31.26 3.33
361 362 7.425224 AACATAACTAGGAGCTCTGTATGTT 57.575 36.000 21.62 21.62 36.07 2.71
362 363 7.124298 TGAAACATAACTAGGAGCTCTGTATGT 59.876 37.037 14.64 15.46 34.05 2.29
363 364 7.492524 TGAAACATAACTAGGAGCTCTGTATG 58.507 38.462 14.64 14.91 0.00 2.39
364 365 7.343316 ACTGAAACATAACTAGGAGCTCTGTAT 59.657 37.037 14.64 1.97 0.00 2.29
365 366 6.663953 ACTGAAACATAACTAGGAGCTCTGTA 59.336 38.462 14.64 4.97 0.00 2.74
366 367 5.482175 ACTGAAACATAACTAGGAGCTCTGT 59.518 40.000 14.64 5.13 0.00 3.41
367 368 5.971763 ACTGAAACATAACTAGGAGCTCTG 58.028 41.667 14.64 4.43 0.00 3.35
368 369 7.561722 TCATACTGAAACATAACTAGGAGCTCT 59.438 37.037 14.64 2.18 0.00 4.09
369 370 7.717568 TCATACTGAAACATAACTAGGAGCTC 58.282 38.462 4.71 4.71 0.00 4.09
370 371 7.661536 TCATACTGAAACATAACTAGGAGCT 57.338 36.000 0.00 0.00 0.00 4.09
371 372 8.894768 AATCATACTGAAACATAACTAGGAGC 57.105 34.615 0.00 0.00 0.00 4.70
377 378 9.167311 GTGGAAGAATCATACTGAAACATAACT 57.833 33.333 0.00 0.00 0.00 2.24
378 379 9.167311 AGTGGAAGAATCATACTGAAACATAAC 57.833 33.333 0.00 0.00 0.00 1.89
380 381 9.817809 GTAGTGGAAGAATCATACTGAAACATA 57.182 33.333 0.00 0.00 0.00 2.29
381 382 8.543774 AGTAGTGGAAGAATCATACTGAAACAT 58.456 33.333 0.00 0.00 0.00 2.71
382 383 7.907389 AGTAGTGGAAGAATCATACTGAAACA 58.093 34.615 0.00 0.00 0.00 2.83
383 384 8.779354 AAGTAGTGGAAGAATCATACTGAAAC 57.221 34.615 0.00 0.00 0.00 2.78
391 392 9.606631 GACAAGATAAAGTAGTGGAAGAATCAT 57.393 33.333 0.00 0.00 0.00 2.45
392 393 8.816894 AGACAAGATAAAGTAGTGGAAGAATCA 58.183 33.333 0.00 0.00 0.00 2.57
393 394 9.660180 AAGACAAGATAAAGTAGTGGAAGAATC 57.340 33.333 0.00 0.00 0.00 2.52
395 396 9.490379 GAAAGACAAGATAAAGTAGTGGAAGAA 57.510 33.333 0.00 0.00 0.00 2.52
396 397 8.871125 AGAAAGACAAGATAAAGTAGTGGAAGA 58.129 33.333 0.00 0.00 0.00 2.87
399 400 9.310449 ACTAGAAAGACAAGATAAAGTAGTGGA 57.690 33.333 0.00 0.00 0.00 4.02
400 401 9.930693 AACTAGAAAGACAAGATAAAGTAGTGG 57.069 33.333 0.00 0.00 0.00 4.00
423 424 8.968969 ACAAACCGATCTATCTAAACTAGAACT 58.031 33.333 0.00 0.00 38.50 3.01
424 425 9.021863 CACAAACCGATCTATCTAAACTAGAAC 57.978 37.037 0.00 0.00 38.50 3.01
425 426 8.195436 CCACAAACCGATCTATCTAAACTAGAA 58.805 37.037 0.00 0.00 38.50 2.10
426 427 7.341256 ACCACAAACCGATCTATCTAAACTAGA 59.659 37.037 0.00 0.00 39.50 2.43
427 428 7.490000 ACCACAAACCGATCTATCTAAACTAG 58.510 38.462 0.00 0.00 0.00 2.57
428 429 7.123098 TGACCACAAACCGATCTATCTAAACTA 59.877 37.037 0.00 0.00 0.00 2.24
441 442 3.998341 GCTACTAAATGACCACAAACCGA 59.002 43.478 0.00 0.00 0.00 4.69
448 449 5.479306 TGACTTCAGCTACTAAATGACCAC 58.521 41.667 0.00 0.00 0.00 4.16
453 454 5.582665 GGGACTTGACTTCAGCTACTAAATG 59.417 44.000 0.00 0.00 0.00 2.32
484 485 6.661805 GGTTCTGGGGAATAAACACTTTATCA 59.338 38.462 0.00 0.00 34.88 2.15
489 490 4.741928 AGGTTCTGGGGAATAAACACTT 57.258 40.909 0.00 0.00 33.71 3.16
495 496 6.851836 AGATCTATGAAGGTTCTGGGGAATAA 59.148 38.462 0.00 0.00 33.71 1.40
502 503 6.477053 TTCTGAGATCTATGAAGGTTCTGG 57.523 41.667 0.00 0.00 0.00 3.86
505 506 8.138712 ACGTTATTCTGAGATCTATGAAGGTTC 58.861 37.037 13.17 5.73 0.00 3.62
509 510 9.952188 TGTAACGTTATTCTGAGATCTATGAAG 57.048 33.333 11.86 3.00 0.00 3.02
528 529 0.036164 TGCCAGCCAATCTGTAACGT 59.964 50.000 0.00 0.00 41.25 3.99
533 534 0.698238 TACCTTGCCAGCCAATCTGT 59.302 50.000 0.00 0.00 41.25 3.41
540 541 0.880718 GCGACTATACCTTGCCAGCC 60.881 60.000 0.00 0.00 0.00 4.85
557 558 1.136872 GTCGTAGCTTGCTCAGAGCG 61.137 60.000 17.81 5.45 46.26 5.03
586 587 4.838152 CACGGGGGTCATCTGCCG 62.838 72.222 0.00 0.00 0.00 5.69
590 591 0.106369 TCGATACACGGGGGTCATCT 60.106 55.000 0.00 0.00 42.82 2.90
601 602 1.202428 GGCAAGAGGTCCTCGATACAC 60.202 57.143 13.41 1.61 35.36 2.90
607 608 0.674895 CTTTGGGCAAGAGGTCCTCG 60.675 60.000 13.41 1.28 43.75 4.63
613 614 3.274288 GTCAGTATCTTTGGGCAAGAGG 58.726 50.000 0.00 0.00 45.11 3.69
622 623 8.511604 AGTTTATCCCATTGTCAGTATCTTTG 57.488 34.615 0.00 0.00 0.00 2.77
630 631 9.784531 ATCAATAGTAGTTTATCCCATTGTCAG 57.215 33.333 0.00 0.00 0.00 3.51
751 760 4.609559 CGTTTTCCATTTCGTCATGTCGAA 60.610 41.667 21.11 21.11 45.87 3.71
752 761 3.120820 CGTTTTCCATTTCGTCATGTCGA 60.121 43.478 11.02 11.02 38.08 4.20
879 888 4.398044 TCGTCACACTAGCATTATGAGTCA 59.602 41.667 0.00 0.00 0.00 3.41
970 979 5.747342 TGGTGATGAACTGATCAATGATCA 58.253 37.500 22.84 22.84 45.35 2.92
983 1000 3.129287 GGACATGGTGATTGGTGATGAAC 59.871 47.826 0.00 0.00 0.00 3.18
984 1001 3.245193 TGGACATGGTGATTGGTGATGAA 60.245 43.478 0.00 0.00 0.00 2.57
985 1002 2.308275 TGGACATGGTGATTGGTGATGA 59.692 45.455 0.00 0.00 0.00 2.92
986 1003 2.725637 TGGACATGGTGATTGGTGATG 58.274 47.619 0.00 0.00 0.00 3.07
987 1004 3.359033 CTTGGACATGGTGATTGGTGAT 58.641 45.455 0.00 0.00 0.00 3.06
988 1005 2.555006 CCTTGGACATGGTGATTGGTGA 60.555 50.000 0.00 0.00 0.00 4.02
989 1006 1.820519 CCTTGGACATGGTGATTGGTG 59.179 52.381 0.00 0.00 0.00 4.17
990 1007 1.428912 ACCTTGGACATGGTGATTGGT 59.571 47.619 8.86 0.00 37.45 3.67
1040 1057 6.640907 AGAGTTATTTGCAACGAAAAATGGTC 59.359 34.615 0.00 0.00 33.50 4.02
1048 1065 8.564574 AGTTAAATCAGAGTTATTTGCAACGAA 58.435 29.630 0.00 0.00 33.50 3.85
1082 1101 4.037923 TCTGCAAAAGAAACCAGATGAACC 59.962 41.667 0.00 0.00 30.00 3.62
1207 1226 7.588488 CACGAACTTTCAAATAAATACACGGTT 59.412 33.333 0.00 0.00 0.00 4.44
1264 1283 4.221422 CCGTCCACCGCCATCGAT 62.221 66.667 0.00 0.00 38.10 3.59
1392 1411 2.660064 GGCTCGGGCTTCTTCTCCA 61.660 63.158 7.48 0.00 38.73 3.86
1414 1451 0.889186 TGGGCGTTTCAGGCTTCTTC 60.889 55.000 0.00 0.00 36.85 2.87
1478 1515 3.443045 CCGGGGACAGCAACATGC 61.443 66.667 0.00 0.00 45.46 4.06
1479 1516 3.443045 GCCGGGGACAGCAACATG 61.443 66.667 2.18 0.00 0.00 3.21
1480 1517 4.740822 GGCCGGGGACAGCAACAT 62.741 66.667 2.18 0.00 0.00 2.71
1623 1660 9.458374 AATAACCGACAAAAAGTGAATACAAAG 57.542 29.630 0.00 0.00 0.00 2.77
1741 1780 1.402325 GCTAGCCGCGTCCAAATTTTT 60.402 47.619 2.29 0.00 0.00 1.94
1742 1781 0.170339 GCTAGCCGCGTCCAAATTTT 59.830 50.000 2.29 0.00 0.00 1.82
1743 1782 0.676782 AGCTAGCCGCGTCCAAATTT 60.677 50.000 12.13 0.00 45.59 1.82
1744 1783 0.177141 TAGCTAGCCGCGTCCAAATT 59.823 50.000 12.13 0.00 45.59 1.82
1745 1784 0.249489 CTAGCTAGCCGCGTCCAAAT 60.249 55.000 12.13 0.00 45.59 2.32
1746 1785 1.141019 CTAGCTAGCCGCGTCCAAA 59.859 57.895 12.13 0.00 45.59 3.28
1747 1786 2.805546 CTAGCTAGCCGCGTCCAA 59.194 61.111 12.13 0.00 45.59 3.53
1748 1787 3.900892 GCTAGCTAGCCGCGTCCA 61.901 66.667 31.67 0.00 45.59 4.02
1754 1793 1.473257 TGGAAACATGCTAGCTAGCCG 60.473 52.381 36.45 29.61 41.79 5.52
1755 1794 2.332063 TGGAAACATGCTAGCTAGCC 57.668 50.000 36.45 22.36 41.79 3.93
1756 1795 3.959573 CTTGGAAACATGCTAGCTAGC 57.040 47.619 34.20 34.20 42.79 3.42
1765 1804 4.583871 AGGAAGACTAGCTTGGAAACATG 58.416 43.478 0.00 0.00 42.32 3.21
1766 1805 4.621747 CGAGGAAGACTAGCTTGGAAACAT 60.622 45.833 0.00 0.00 42.32 2.71
1767 1806 3.306088 CGAGGAAGACTAGCTTGGAAACA 60.306 47.826 0.00 0.00 36.83 2.83
1768 1807 3.056749 TCGAGGAAGACTAGCTTGGAAAC 60.057 47.826 0.00 0.00 36.83 2.78
1769 1808 3.056749 GTCGAGGAAGACTAGCTTGGAAA 60.057 47.826 0.00 0.00 36.83 3.13
1770 1809 2.492484 GTCGAGGAAGACTAGCTTGGAA 59.508 50.000 0.00 0.00 36.83 3.53
1771 1810 2.093106 GTCGAGGAAGACTAGCTTGGA 58.907 52.381 0.00 0.00 36.83 3.53
1772 1811 1.819288 TGTCGAGGAAGACTAGCTTGG 59.181 52.381 0.00 0.00 41.47 3.61
1773 1812 2.229062 TGTGTCGAGGAAGACTAGCTTG 59.771 50.000 0.00 0.00 41.47 4.01
1774 1813 2.229302 GTGTGTCGAGGAAGACTAGCTT 59.771 50.000 0.00 0.00 41.47 3.74
1775 1814 1.813786 GTGTGTCGAGGAAGACTAGCT 59.186 52.381 0.00 0.00 41.47 3.32
1776 1815 1.540267 TGTGTGTCGAGGAAGACTAGC 59.460 52.381 0.00 0.00 41.47 3.42
1777 1816 2.552743 TGTGTGTGTCGAGGAAGACTAG 59.447 50.000 0.00 0.00 41.47 2.57
1778 1817 2.292569 GTGTGTGTGTCGAGGAAGACTA 59.707 50.000 0.00 0.00 41.47 2.59
1779 1818 1.067212 GTGTGTGTGTCGAGGAAGACT 59.933 52.381 0.00 0.00 41.47 3.24
1780 1819 1.488527 GTGTGTGTGTCGAGGAAGAC 58.511 55.000 0.00 0.00 41.30 3.01
1781 1820 0.387929 GGTGTGTGTGTCGAGGAAGA 59.612 55.000 0.00 0.00 0.00 2.87
1782 1821 0.389391 AGGTGTGTGTGTCGAGGAAG 59.611 55.000 0.00 0.00 0.00 3.46
1783 1822 1.694844 TAGGTGTGTGTGTCGAGGAA 58.305 50.000 0.00 0.00 0.00 3.36
1784 1823 1.611977 CTTAGGTGTGTGTGTCGAGGA 59.388 52.381 0.00 0.00 0.00 3.71
1785 1824 1.611977 TCTTAGGTGTGTGTGTCGAGG 59.388 52.381 0.00 0.00 0.00 4.63
1786 1825 2.922758 GCTCTTAGGTGTGTGTGTCGAG 60.923 54.545 0.00 0.00 0.00 4.04
1787 1826 1.000607 GCTCTTAGGTGTGTGTGTCGA 60.001 52.381 0.00 0.00 0.00 4.20
1788 1827 1.269569 TGCTCTTAGGTGTGTGTGTCG 60.270 52.381 0.00 0.00 0.00 4.35
1789 1828 2.526304 TGCTCTTAGGTGTGTGTGTC 57.474 50.000 0.00 0.00 0.00 3.67
1790 1829 2.170607 AGTTGCTCTTAGGTGTGTGTGT 59.829 45.455 0.00 0.00 0.00 3.72
1791 1830 2.802816 GAGTTGCTCTTAGGTGTGTGTG 59.197 50.000 0.00 0.00 0.00 3.82
1792 1831 2.434336 TGAGTTGCTCTTAGGTGTGTGT 59.566 45.455 0.00 0.00 0.00 3.72
1793 1832 3.111853 TGAGTTGCTCTTAGGTGTGTG 57.888 47.619 0.00 0.00 0.00 3.82
1794 1833 3.118408 TGTTGAGTTGCTCTTAGGTGTGT 60.118 43.478 0.00 0.00 0.00 3.72
1795 1834 3.466836 TGTTGAGTTGCTCTTAGGTGTG 58.533 45.455 0.00 0.00 0.00 3.82
1796 1835 3.838244 TGTTGAGTTGCTCTTAGGTGT 57.162 42.857 0.00 0.00 0.00 4.16
1797 1836 4.130118 AGTTGTTGAGTTGCTCTTAGGTG 58.870 43.478 0.00 0.00 0.00 4.00
1798 1837 4.423625 AGTTGTTGAGTTGCTCTTAGGT 57.576 40.909 0.00 0.00 0.00 3.08
1799 1838 5.409826 CCTAAGTTGTTGAGTTGCTCTTAGG 59.590 44.000 11.78 11.78 43.12 2.69
1800 1839 5.106908 GCCTAAGTTGTTGAGTTGCTCTTAG 60.107 44.000 0.00 0.00 35.27 2.18
1801 1840 4.755123 GCCTAAGTTGTTGAGTTGCTCTTA 59.245 41.667 0.00 0.00 0.00 2.10
1802 1841 3.565902 GCCTAAGTTGTTGAGTTGCTCTT 59.434 43.478 0.00 0.00 0.00 2.85
1803 1842 3.142174 GCCTAAGTTGTTGAGTTGCTCT 58.858 45.455 0.00 0.00 0.00 4.09
1804 1843 2.878406 TGCCTAAGTTGTTGAGTTGCTC 59.122 45.455 0.00 0.00 0.00 4.26
1805 1844 2.880890 CTGCCTAAGTTGTTGAGTTGCT 59.119 45.455 0.00 0.00 0.00 3.91
1806 1845 2.605580 GCTGCCTAAGTTGTTGAGTTGC 60.606 50.000 0.00 0.00 0.00 4.17
1807 1846 2.349817 CGCTGCCTAAGTTGTTGAGTTG 60.350 50.000 0.00 0.00 0.00 3.16
1810 1849 1.512926 ACGCTGCCTAAGTTGTTGAG 58.487 50.000 0.00 0.00 0.00 3.02
1813 1852 2.841215 TGTTACGCTGCCTAAGTTGTT 58.159 42.857 0.00 0.00 0.00 2.83
2047 2088 1.941734 GCTCAGGATCGTCTTCGCG 60.942 63.158 0.00 0.00 36.96 5.87
2060 2101 1.462670 GAGAAACCGAAGCAAGCTCAG 59.537 52.381 0.00 0.00 0.00 3.35
2092 2133 3.692406 GGAGTCCGTTGGCGAGGT 61.692 66.667 0.00 0.00 41.33 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.