Multiple sequence alignment - TraesCS4D01G302200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G302200 chr4D 100.000 3167 0 0 1 3167 470149602 470146436 0.000000e+00 5849.0
1 TraesCS4D01G302200 chr4D 90.750 1146 97 4 1031 2167 470130302 470129157 0.000000e+00 1520.0
2 TraesCS4D01G302200 chr4D 88.493 1234 117 15 956 2171 470121883 470120657 0.000000e+00 1469.0
3 TraesCS4D01G302200 chr4D 87.023 524 21 5 2674 3167 225989245 225988739 5.970000e-152 547.0
4 TraesCS4D01G302200 chr4A 93.232 2113 105 16 170 2250 678041217 678039111 0.000000e+00 3075.0
5 TraesCS4D01G302200 chr4A 90.167 1261 115 3 999 2250 677988869 677987609 0.000000e+00 1633.0
6 TraesCS4D01G302200 chr4A 89.167 1200 115 9 987 2171 677958537 677957338 0.000000e+00 1482.0
7 TraesCS4D01G302200 chr4A 91.713 181 11 3 2428 2604 677981628 677981448 6.780000e-62 248.0
8 TraesCS4D01G302200 chr4A 86.486 148 17 3 2244 2389 678039081 678038935 3.270000e-35 159.0
9 TraesCS4D01G302200 chr4A 89.831 118 9 3 2244 2359 677987579 677987463 7.080000e-32 148.0
10 TraesCS4D01G302200 chr4A 83.333 84 6 3 1 84 678041307 678041232 1.580000e-08 71.3
11 TraesCS4D01G302200 chr4B 95.728 1662 57 6 602 2250 592195253 592193593 0.000000e+00 2663.0
12 TraesCS4D01G302200 chr4B 88.535 1509 126 13 999 2472 592188049 592186553 0.000000e+00 1784.0
13 TraesCS4D01G302200 chr4B 88.469 1509 128 15 999 2472 592079602 592078105 0.000000e+00 1781.0
14 TraesCS4D01G302200 chr4B 89.304 1178 116 4 999 2167 591955058 591953882 0.000000e+00 1469.0
15 TraesCS4D01G302200 chr4B 88.088 1234 135 9 956 2180 591909390 591908160 0.000000e+00 1454.0
16 TraesCS4D01G302200 chr4B 92.241 348 20 5 175 516 592195646 592195300 1.320000e-133 486.0
17 TraesCS4D01G302200 chr4B 83.951 162 19 4 2247 2402 592193560 592193400 7.080000e-32 148.0
18 TraesCS4D01G302200 chr5D 95.030 503 21 4 2667 3167 532007539 532007039 0.000000e+00 787.0
19 TraesCS4D01G302200 chr6D 94.024 502 26 3 2667 3167 119459293 119458795 0.000000e+00 758.0
20 TraesCS4D01G302200 chr2D 93.737 495 23 4 2674 3167 512891554 512892041 0.000000e+00 736.0
21 TraesCS4D01G302200 chr2D 86.417 508 36 16 2662 3167 9528799 9529275 2.800000e-145 525.0
22 TraesCS4D01G302200 chr3D 92.495 493 30 5 2675 3166 545834674 545834188 0.000000e+00 699.0
23 TraesCS4D01G302200 chr3D 90.253 513 20 14 2674 3167 2276005 2276506 0.000000e+00 643.0
24 TraesCS4D01G302200 chr1D 92.308 494 21 4 2674 3167 194216738 194216262 0.000000e+00 686.0
25 TraesCS4D01G302200 chr1D 95.495 333 14 1 2668 3000 48469668 48469337 6.010000e-147 531.0
26 TraesCS4D01G302200 chr5A 88.224 501 37 7 2667 3167 652969962 652970440 2.120000e-161 579.0
27 TraesCS4D01G302200 chr2B 89.914 347 30 4 2668 3012 408274604 408274947 2.900000e-120 442.0
28 TraesCS4D01G302200 chr1B 89.306 346 30 5 2667 3010 324873809 324873469 8.120000e-116 427.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G302200 chr4D 470146436 470149602 3166 True 5849.000000 5849 100.000000 1 3167 1 chr4D.!!$R4 3166
1 TraesCS4D01G302200 chr4D 470129157 470130302 1145 True 1520.000000 1520 90.750000 1031 2167 1 chr4D.!!$R3 1136
2 TraesCS4D01G302200 chr4D 470120657 470121883 1226 True 1469.000000 1469 88.493000 956 2171 1 chr4D.!!$R2 1215
3 TraesCS4D01G302200 chr4D 225988739 225989245 506 True 547.000000 547 87.023000 2674 3167 1 chr4D.!!$R1 493
4 TraesCS4D01G302200 chr4A 677957338 677958537 1199 True 1482.000000 1482 89.167000 987 2171 1 chr4A.!!$R1 1184
5 TraesCS4D01G302200 chr4A 678038935 678041307 2372 True 1101.766667 3075 87.683667 1 2389 3 chr4A.!!$R4 2388
6 TraesCS4D01G302200 chr4A 677987463 677988869 1406 True 890.500000 1633 89.999000 999 2359 2 chr4A.!!$R3 1360
7 TraesCS4D01G302200 chr4B 592186553 592188049 1496 True 1784.000000 1784 88.535000 999 2472 1 chr4B.!!$R4 1473
8 TraesCS4D01G302200 chr4B 592078105 592079602 1497 True 1781.000000 1781 88.469000 999 2472 1 chr4B.!!$R3 1473
9 TraesCS4D01G302200 chr4B 591953882 591955058 1176 True 1469.000000 1469 89.304000 999 2167 1 chr4B.!!$R2 1168
10 TraesCS4D01G302200 chr4B 591908160 591909390 1230 True 1454.000000 1454 88.088000 956 2180 1 chr4B.!!$R1 1224
11 TraesCS4D01G302200 chr4B 592193400 592195646 2246 True 1099.000000 2663 90.640000 175 2402 3 chr4B.!!$R5 2227
12 TraesCS4D01G302200 chr5D 532007039 532007539 500 True 787.000000 787 95.030000 2667 3167 1 chr5D.!!$R1 500
13 TraesCS4D01G302200 chr3D 2276005 2276506 501 False 643.000000 643 90.253000 2674 3167 1 chr3D.!!$F1 493

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
152 153 0.027716 CGACGTGGAGTAGATCGGTG 59.972 60.0 0.0 0.0 0.0 4.94 F
919 949 0.179018 AACACAAGCTCTCACCACCC 60.179 55.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1399 1451 1.070786 GCAAGGACGAGGTGGACAA 59.929 57.895 0.0 0.0 0.00 3.18 R
2653 2769 0.037303 AATAGCCCAGATGGATGCCG 59.963 55.000 0.0 0.0 37.39 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.221924 TCTCCCTAAACAATCATCACGTCA 59.778 41.667 0.00 0.00 0.00 4.35
31 32 4.250464 TCCCTAAACAATCATCACGTCAC 58.750 43.478 0.00 0.00 0.00 3.67
32 33 3.062099 CCCTAAACAATCATCACGTCACG 59.938 47.826 0.00 0.00 0.00 4.35
33 34 3.678072 CCTAAACAATCATCACGTCACGT 59.322 43.478 0.00 0.00 42.36 4.49
34 35 3.788434 AAACAATCATCACGTCACGTC 57.212 42.857 0.00 0.00 38.32 4.34
35 36 2.724977 ACAATCATCACGTCACGTCT 57.275 45.000 0.00 0.00 38.32 4.18
36 37 3.842732 ACAATCATCACGTCACGTCTA 57.157 42.857 0.00 0.00 38.32 2.59
37 38 3.499048 ACAATCATCACGTCACGTCTAC 58.501 45.455 0.00 0.00 38.32 2.59
84 85 9.210329 TGAATTATTAGACAAGCTTTCGTTGTA 57.790 29.630 0.00 0.00 38.26 2.41
87 88 9.821662 ATTATTAGACAAGCTTTCGTTGTAAAC 57.178 29.630 0.00 0.00 45.31 2.01
88 89 6.913873 TTAGACAAGCTTTCGTTGTAAACT 57.086 33.333 0.00 0.00 46.99 2.66
89 90 5.813080 AGACAAGCTTTCGTTGTAAACTT 57.187 34.783 0.00 0.00 46.99 2.66
93 94 6.844254 ACAAGCTTTCGTTGTAAACTTGTAA 58.156 32.000 0.00 0.00 46.99 2.41
94 95 7.477494 ACAAGCTTTCGTTGTAAACTTGTAAT 58.523 30.769 0.00 0.00 46.99 1.89
95 96 8.614346 ACAAGCTTTCGTTGTAAACTTGTAATA 58.386 29.630 0.00 0.00 46.99 0.98
97 98 9.659830 AAGCTTTCGTTGTAAACTTGTAATAAG 57.340 29.630 0.00 0.00 46.99 1.73
98 99 9.048446 AGCTTTCGTTGTAAACTTGTAATAAGA 57.952 29.630 0.00 0.00 46.99 2.10
99 100 9.099820 GCTTTCGTTGTAAACTTGTAATAAGAC 57.900 33.333 0.00 0.00 46.99 3.01
110 111 8.785184 AACTTGTAATAAGACTAGATAGGGCT 57.215 34.615 0.00 0.00 0.00 5.19
111 112 9.878737 AACTTGTAATAAGACTAGATAGGGCTA 57.121 33.333 0.00 0.00 0.00 3.93
112 113 9.523168 ACTTGTAATAAGACTAGATAGGGCTAG 57.477 37.037 0.00 0.00 42.77 3.42
113 114 7.941431 TGTAATAAGACTAGATAGGGCTAGC 57.059 40.000 6.04 6.04 41.21 3.42
114 115 7.467650 TGTAATAAGACTAGATAGGGCTAGCA 58.532 38.462 18.24 0.00 41.21 3.49
115 116 6.844097 AATAAGACTAGATAGGGCTAGCAC 57.156 41.667 18.24 14.32 41.21 4.40
116 117 4.463050 AAGACTAGATAGGGCTAGCACT 57.537 45.455 25.50 25.50 41.21 4.40
117 118 4.028993 AGACTAGATAGGGCTAGCACTC 57.971 50.000 26.01 10.86 41.21 3.51
118 119 2.745281 GACTAGATAGGGCTAGCACTCG 59.255 54.545 26.01 10.44 41.21 4.18
119 120 2.106857 ACTAGATAGGGCTAGCACTCGT 59.893 50.000 26.01 14.12 41.21 4.18
120 121 2.953284 AGATAGGGCTAGCACTCGTA 57.047 50.000 26.01 6.57 0.00 3.43
121 122 3.443145 AGATAGGGCTAGCACTCGTAT 57.557 47.619 26.01 12.19 0.00 3.06
122 123 3.768878 AGATAGGGCTAGCACTCGTATT 58.231 45.455 26.01 4.27 0.00 1.89
123 124 3.759618 AGATAGGGCTAGCACTCGTATTC 59.240 47.826 26.01 13.45 0.00 1.75
124 125 2.074729 AGGGCTAGCACTCGTATTCT 57.925 50.000 15.55 0.00 0.00 2.40
125 126 3.225177 AGGGCTAGCACTCGTATTCTA 57.775 47.619 15.55 0.00 0.00 2.10
126 127 2.885894 AGGGCTAGCACTCGTATTCTAC 59.114 50.000 15.55 0.00 0.00 2.59
127 128 2.885894 GGGCTAGCACTCGTATTCTACT 59.114 50.000 18.24 0.00 0.00 2.57
128 129 3.304794 GGGCTAGCACTCGTATTCTACTG 60.305 52.174 18.24 0.00 0.00 2.74
129 130 3.304794 GGCTAGCACTCGTATTCTACTGG 60.305 52.174 18.24 0.00 0.00 4.00
130 131 3.315749 GCTAGCACTCGTATTCTACTGGT 59.684 47.826 10.63 0.00 0.00 4.00
131 132 3.784701 AGCACTCGTATTCTACTGGTG 57.215 47.619 0.00 0.00 34.41 4.17
132 133 2.159226 AGCACTCGTATTCTACTGGTGC 60.159 50.000 16.37 16.37 45.69 5.01
133 134 2.810650 CACTCGTATTCTACTGGTGCC 58.189 52.381 0.00 0.00 0.00 5.01
134 135 1.404391 ACTCGTATTCTACTGGTGCCG 59.596 52.381 0.00 0.00 0.00 5.69
135 136 1.674441 CTCGTATTCTACTGGTGCCGA 59.326 52.381 0.00 0.00 0.00 5.54
136 137 1.402968 TCGTATTCTACTGGTGCCGAC 59.597 52.381 0.00 0.00 0.00 4.79
137 138 1.836383 GTATTCTACTGGTGCCGACG 58.164 55.000 0.00 0.00 0.00 5.12
138 139 1.133790 GTATTCTACTGGTGCCGACGT 59.866 52.381 0.00 0.00 0.00 4.34
139 140 0.108804 ATTCTACTGGTGCCGACGTG 60.109 55.000 0.00 0.00 0.00 4.49
140 141 2.126071 CTACTGGTGCCGACGTGG 60.126 66.667 0.00 0.00 42.50 4.94
141 142 2.598099 TACTGGTGCCGACGTGGA 60.598 61.111 0.00 0.00 42.00 4.02
142 143 2.543687 CTACTGGTGCCGACGTGGAG 62.544 65.000 0.00 0.00 42.00 3.86
143 144 3.991051 CTGGTGCCGACGTGGAGT 61.991 66.667 0.00 0.00 42.00 3.85
144 145 2.598099 TGGTGCCGACGTGGAGTA 60.598 61.111 0.00 0.00 42.00 2.59
145 146 2.181021 GGTGCCGACGTGGAGTAG 59.819 66.667 0.00 0.00 42.00 2.57
146 147 2.338015 GGTGCCGACGTGGAGTAGA 61.338 63.158 0.00 0.00 42.00 2.59
147 148 1.664321 GGTGCCGACGTGGAGTAGAT 61.664 60.000 0.00 0.00 42.00 1.98
148 149 0.248539 GTGCCGACGTGGAGTAGATC 60.249 60.000 0.00 0.00 42.00 2.75
149 150 1.009900 GCCGACGTGGAGTAGATCG 60.010 63.158 0.00 0.00 42.00 3.69
150 151 1.647629 CCGACGTGGAGTAGATCGG 59.352 63.158 0.00 0.00 45.61 4.18
151 152 1.094073 CCGACGTGGAGTAGATCGGT 61.094 60.000 0.00 0.00 45.73 4.69
152 153 0.027716 CGACGTGGAGTAGATCGGTG 59.972 60.000 0.00 0.00 0.00 4.94
153 154 1.376543 GACGTGGAGTAGATCGGTGA 58.623 55.000 0.00 0.00 0.00 4.02
154 155 1.948145 GACGTGGAGTAGATCGGTGAT 59.052 52.381 0.00 0.00 0.00 3.06
155 156 3.136763 GACGTGGAGTAGATCGGTGATA 58.863 50.000 0.00 0.00 0.00 2.15
156 157 3.139850 ACGTGGAGTAGATCGGTGATAG 58.860 50.000 0.00 0.00 0.00 2.08
157 158 2.095668 CGTGGAGTAGATCGGTGATAGC 60.096 54.545 0.00 0.00 0.00 2.97
158 159 3.150767 GTGGAGTAGATCGGTGATAGCT 58.849 50.000 0.00 0.00 0.00 3.32
159 160 3.189702 GTGGAGTAGATCGGTGATAGCTC 59.810 52.174 0.00 0.00 0.00 4.09
160 161 3.181443 TGGAGTAGATCGGTGATAGCTCA 60.181 47.826 0.00 0.00 0.00 4.26
161 162 3.438781 GGAGTAGATCGGTGATAGCTCAG 59.561 52.174 0.00 0.00 30.18 3.35
162 163 2.817258 AGTAGATCGGTGATAGCTCAGC 59.183 50.000 0.00 0.00 44.64 4.26
163 164 1.993956 AGATCGGTGATAGCTCAGCT 58.006 50.000 3.60 3.60 45.65 4.24
164 165 1.612950 AGATCGGTGATAGCTCAGCTG 59.387 52.381 10.31 7.63 45.65 4.24
165 166 1.339610 GATCGGTGATAGCTCAGCTGT 59.660 52.381 10.31 0.89 45.65 4.40
166 167 1.186200 TCGGTGATAGCTCAGCTGTT 58.814 50.000 10.31 0.00 45.65 3.16
167 168 1.134995 TCGGTGATAGCTCAGCTGTTG 60.135 52.381 10.31 9.26 45.65 3.33
168 169 1.661341 GGTGATAGCTCAGCTGTTGG 58.339 55.000 10.31 6.67 44.67 3.77
177 178 2.741228 GCTCAGCTGTTGGTATGGAGAG 60.741 54.545 14.67 0.00 0.00 3.20
192 193 1.518903 GAGAGCTGGTGGTTGTTGGC 61.519 60.000 0.00 0.00 0.00 4.52
333 334 0.958091 CGCCCTGGTCAATGAACAAA 59.042 50.000 1.49 0.00 0.00 2.83
426 435 5.832539 AGGATATGGGATGTTTGTCTAGG 57.167 43.478 0.00 0.00 0.00 3.02
428 437 6.094302 AGGATATGGGATGTTTGTCTAGGAT 58.906 40.000 0.00 0.00 0.00 3.24
430 439 7.181125 AGGATATGGGATGTTTGTCTAGGATAC 59.819 40.741 0.00 0.00 0.00 2.24
496 509 7.062749 ACAGTTTCTGTGGAGTTCATAACTA 57.937 36.000 1.44 0.00 43.63 2.24
503 525 5.891451 TGTGGAGTTCATAACTATGACTCG 58.109 41.667 15.44 0.00 43.03 4.18
516 538 4.634883 ACTATGACTCGGTGTACAGTACTG 59.365 45.833 21.44 21.44 0.00 2.74
534 556 7.761704 ACAGTACTGATGAGTGTGATTTATGAC 59.238 37.037 29.30 0.00 33.21 3.06
539 561 6.939622 TGATGAGTGTGATTTATGACTGAGT 58.060 36.000 0.00 0.00 0.00 3.41
543 565 3.375299 GTGTGATTTATGACTGAGTGGCC 59.625 47.826 0.00 0.00 0.00 5.36
552 574 1.071471 CTGAGTGGCCGAAACCAGT 59.929 57.895 0.00 0.00 46.35 4.00
557 579 1.527380 TGGCCGAAACCAGTGGAAC 60.527 57.895 18.40 5.58 33.75 3.62
574 596 4.731480 GTGGAACATTGTACGTCAAACAAC 59.269 41.667 4.58 0.00 44.52 3.32
663 690 5.903810 CACAAGTGGAATAGTAGGAGTACC 58.096 45.833 0.00 0.00 0.00 3.34
677 704 8.276453 AGTAGGAGTACCTTATTGGCATTATT 57.724 34.615 0.00 0.00 45.36 1.40
681 708 8.058847 AGGAGTACCTTATTGGCATTATTTTGA 58.941 33.333 0.00 0.00 45.36 2.69
857 887 2.125912 CTGGGGTCGAGCTTCACG 60.126 66.667 15.18 4.60 0.00 4.35
914 944 3.321497 CCTGTCTAACACAAGCTCTCAC 58.679 50.000 0.00 0.00 33.31 3.51
919 949 0.179018 AACACAAGCTCTCACCACCC 60.179 55.000 0.00 0.00 0.00 4.61
920 950 1.669115 CACAAGCTCTCACCACCCG 60.669 63.158 0.00 0.00 0.00 5.28
921 951 2.140792 ACAAGCTCTCACCACCCGT 61.141 57.895 0.00 0.00 0.00 5.28
922 952 1.669115 CAAGCTCTCACCACCCGTG 60.669 63.158 0.00 0.00 44.50 4.94
923 953 2.140792 AAGCTCTCACCACCCGTGT 61.141 57.895 0.00 0.00 43.51 4.49
924 954 2.357517 GCTCTCACCACCCGTGTG 60.358 66.667 0.00 0.00 43.51 3.82
925 955 2.867855 GCTCTCACCACCCGTGTGA 61.868 63.158 0.00 0.00 45.76 3.58
1383 1435 2.507547 TTCGTGTACGCGATGGGC 60.508 61.111 29.98 0.00 40.76 5.36
1428 1480 4.704833 TCCTTGCTGCTGGCGACC 62.705 66.667 0.00 0.00 45.43 4.79
1896 1948 1.073897 GCAGCTTCTCAACCTGGGT 59.926 57.895 0.00 0.00 0.00 4.51
2200 2270 4.877323 TCTCTATGCGTGTAGTGTAGTG 57.123 45.455 0.00 0.00 0.00 2.74
2337 2448 8.826710 TCTTGCAATAAGTGTAGTACAATATGC 58.173 33.333 20.25 20.25 0.00 3.14
2362 2475 4.942761 TTGCTGCTTCTTCAGGAATTTT 57.057 36.364 0.00 0.00 39.06 1.82
2413 2529 2.174060 GCGGGAAGCTTTTATTGACG 57.826 50.000 0.00 0.00 44.04 4.35
2434 2550 3.608474 CGTCAAACGGGGATTCAAAAGAC 60.608 47.826 0.00 0.00 38.08 3.01
2472 2588 6.664816 TCATTGGAAAAGATGGCAGAAGTTAT 59.335 34.615 0.00 0.00 0.00 1.89
2473 2589 5.902613 TGGAAAAGATGGCAGAAGTTATG 57.097 39.130 0.00 0.00 0.00 1.90
2474 2590 4.706476 TGGAAAAGATGGCAGAAGTTATGG 59.294 41.667 0.00 0.00 0.00 2.74
2475 2591 4.098501 GGAAAAGATGGCAGAAGTTATGGG 59.901 45.833 0.00 0.00 0.00 4.00
2476 2592 4.591321 AAAGATGGCAGAAGTTATGGGA 57.409 40.909 0.00 0.00 0.00 4.37
2477 2593 3.853355 AGATGGCAGAAGTTATGGGAG 57.147 47.619 0.00 0.00 0.00 4.30
2478 2594 2.441001 AGATGGCAGAAGTTATGGGAGG 59.559 50.000 0.00 0.00 0.00 4.30
2479 2595 0.918983 TGGCAGAAGTTATGGGAGGG 59.081 55.000 0.00 0.00 0.00 4.30
2480 2596 1.213296 GGCAGAAGTTATGGGAGGGA 58.787 55.000 0.00 0.00 0.00 4.20
2481 2597 1.564348 GGCAGAAGTTATGGGAGGGAA 59.436 52.381 0.00 0.00 0.00 3.97
2482 2598 2.025321 GGCAGAAGTTATGGGAGGGAAA 60.025 50.000 0.00 0.00 0.00 3.13
2483 2599 3.563479 GGCAGAAGTTATGGGAGGGAAAA 60.563 47.826 0.00 0.00 0.00 2.29
2484 2600 3.696548 GCAGAAGTTATGGGAGGGAAAAG 59.303 47.826 0.00 0.00 0.00 2.27
2485 2601 4.273318 CAGAAGTTATGGGAGGGAAAAGG 58.727 47.826 0.00 0.00 0.00 3.11
2486 2602 3.923425 AGAAGTTATGGGAGGGAAAAGGT 59.077 43.478 0.00 0.00 0.00 3.50
2487 2603 5.045140 CAGAAGTTATGGGAGGGAAAAGGTA 60.045 44.000 0.00 0.00 0.00 3.08
2488 2604 5.191921 AGAAGTTATGGGAGGGAAAAGGTAG 59.808 44.000 0.00 0.00 0.00 3.18
2489 2605 3.202373 AGTTATGGGAGGGAAAAGGTAGC 59.798 47.826 0.00 0.00 0.00 3.58
2490 2606 1.681229 ATGGGAGGGAAAAGGTAGCA 58.319 50.000 0.00 0.00 0.00 3.49
2491 2607 1.451449 TGGGAGGGAAAAGGTAGCAA 58.549 50.000 0.00 0.00 0.00 3.91
2492 2608 1.783979 TGGGAGGGAAAAGGTAGCAAA 59.216 47.619 0.00 0.00 0.00 3.68
2493 2609 2.168496 GGGAGGGAAAAGGTAGCAAAC 58.832 52.381 0.00 0.00 0.00 2.93
2494 2610 1.810755 GGAGGGAAAAGGTAGCAAACG 59.189 52.381 0.00 0.00 0.00 3.60
2495 2611 2.501261 GAGGGAAAAGGTAGCAAACGT 58.499 47.619 0.00 0.00 0.00 3.99
2496 2612 2.882761 GAGGGAAAAGGTAGCAAACGTT 59.117 45.455 0.00 0.00 37.79 3.99
2497 2613 4.067192 GAGGGAAAAGGTAGCAAACGTTA 58.933 43.478 0.00 0.00 35.18 3.18
2498 2614 4.659115 AGGGAAAAGGTAGCAAACGTTAT 58.341 39.130 0.00 0.00 35.18 1.89
2499 2615 4.457949 AGGGAAAAGGTAGCAAACGTTATG 59.542 41.667 0.00 3.64 35.18 1.90
2500 2616 4.216902 GGGAAAAGGTAGCAAACGTTATGT 59.783 41.667 0.00 0.00 35.18 2.29
2501 2617 5.278610 GGGAAAAGGTAGCAAACGTTATGTT 60.279 40.000 0.00 3.27 44.59 2.71
2502 2618 5.627780 GGAAAAGGTAGCAAACGTTATGTTG 59.372 40.000 0.00 0.00 40.84 3.33
2503 2619 6.380095 AAAAGGTAGCAAACGTTATGTTGA 57.620 33.333 0.00 0.00 40.84 3.18
2504 2620 5.607119 AAGGTAGCAAACGTTATGTTGAG 57.393 39.130 0.00 0.00 40.84 3.02
2505 2621 4.638304 AGGTAGCAAACGTTATGTTGAGT 58.362 39.130 0.00 0.00 40.84 3.41
2506 2622 5.786311 AGGTAGCAAACGTTATGTTGAGTA 58.214 37.500 0.00 0.00 40.84 2.59
2507 2623 5.636543 AGGTAGCAAACGTTATGTTGAGTAC 59.363 40.000 0.00 2.17 40.84 2.73
2508 2624 5.406175 GGTAGCAAACGTTATGTTGAGTACA 59.594 40.000 0.00 0.00 40.84 2.90
2509 2625 5.338614 AGCAAACGTTATGTTGAGTACAC 57.661 39.130 0.00 0.00 40.84 2.90
2510 2626 5.054477 AGCAAACGTTATGTTGAGTACACT 58.946 37.500 0.00 0.00 40.84 3.55
2511 2627 6.218019 AGCAAACGTTATGTTGAGTACACTA 58.782 36.000 0.00 0.00 40.84 2.74
2512 2628 6.145048 AGCAAACGTTATGTTGAGTACACTAC 59.855 38.462 0.00 0.00 40.84 2.73
2513 2629 6.617105 GCAAACGTTATGTTGAGTACACTACC 60.617 42.308 0.00 0.00 40.84 3.18
2514 2630 4.726416 ACGTTATGTTGAGTACACTACCG 58.274 43.478 0.00 0.00 40.19 4.02
2515 2631 4.216257 ACGTTATGTTGAGTACACTACCGT 59.784 41.667 0.00 0.00 40.19 4.83
2516 2632 4.790140 CGTTATGTTGAGTACACTACCGTC 59.210 45.833 0.00 0.00 40.19 4.79
2517 2633 2.975410 TGTTGAGTACACTACCGTCG 57.025 50.000 0.00 0.00 0.00 5.12
2518 2634 1.069022 TGTTGAGTACACTACCGTCGC 60.069 52.381 0.00 0.00 0.00 5.19
2519 2635 1.069022 GTTGAGTACACTACCGTCGCA 60.069 52.381 0.00 0.00 0.00 5.10
2520 2636 1.237533 TGAGTACACTACCGTCGCAA 58.762 50.000 0.00 0.00 0.00 4.85
2521 2637 1.608109 TGAGTACACTACCGTCGCAAA 59.392 47.619 0.00 0.00 0.00 3.68
2522 2638 2.034432 TGAGTACACTACCGTCGCAAAA 59.966 45.455 0.00 0.00 0.00 2.44
2523 2639 3.248266 GAGTACACTACCGTCGCAAAAT 58.752 45.455 0.00 0.00 0.00 1.82
2524 2640 4.082841 TGAGTACACTACCGTCGCAAAATA 60.083 41.667 0.00 0.00 0.00 1.40
2525 2641 4.168760 AGTACACTACCGTCGCAAAATAC 58.831 43.478 0.00 0.00 0.00 1.89
2526 2642 3.029320 ACACTACCGTCGCAAAATACA 57.971 42.857 0.00 0.00 0.00 2.29
2527 2643 3.391965 ACACTACCGTCGCAAAATACAA 58.608 40.909 0.00 0.00 0.00 2.41
2528 2644 3.808726 ACACTACCGTCGCAAAATACAAA 59.191 39.130 0.00 0.00 0.00 2.83
2529 2645 4.084223 ACACTACCGTCGCAAAATACAAAG 60.084 41.667 0.00 0.00 0.00 2.77
2530 2646 2.981400 ACCGTCGCAAAATACAAAGG 57.019 45.000 0.00 0.00 0.00 3.11
2531 2647 2.223745 ACCGTCGCAAAATACAAAGGT 58.776 42.857 0.00 0.00 0.00 3.50
2532 2648 2.031508 ACCGTCGCAAAATACAAAGGTG 60.032 45.455 0.00 0.00 0.00 4.00
2533 2649 2.224549 CCGTCGCAAAATACAAAGGTGA 59.775 45.455 0.00 0.00 0.00 4.02
2534 2650 3.479006 CGTCGCAAAATACAAAGGTGAG 58.521 45.455 0.00 0.00 0.00 3.51
2535 2651 3.666902 CGTCGCAAAATACAAAGGTGAGG 60.667 47.826 0.00 0.00 0.00 3.86
2536 2652 3.500680 GTCGCAAAATACAAAGGTGAGGA 59.499 43.478 0.00 0.00 0.00 3.71
2537 2653 3.500680 TCGCAAAATACAAAGGTGAGGAC 59.499 43.478 0.00 0.00 0.00 3.85
2538 2654 3.252215 CGCAAAATACAAAGGTGAGGACA 59.748 43.478 0.00 0.00 0.00 4.02
2539 2655 4.546570 GCAAAATACAAAGGTGAGGACAC 58.453 43.478 0.00 0.00 45.27 3.67
2549 2665 2.957491 GTGAGGACACCAGAGATGAG 57.043 55.000 0.00 0.00 40.74 2.90
2550 2666 2.451490 GTGAGGACACCAGAGATGAGA 58.549 52.381 0.00 0.00 40.74 3.27
2551 2667 2.828520 GTGAGGACACCAGAGATGAGAA 59.171 50.000 0.00 0.00 40.74 2.87
2552 2668 3.450457 GTGAGGACACCAGAGATGAGAAT 59.550 47.826 0.00 0.00 40.74 2.40
2553 2669 3.450096 TGAGGACACCAGAGATGAGAATG 59.550 47.826 0.00 0.00 0.00 2.67
2554 2670 3.703556 GAGGACACCAGAGATGAGAATGA 59.296 47.826 0.00 0.00 0.00 2.57
2555 2671 4.296912 AGGACACCAGAGATGAGAATGAT 58.703 43.478 0.00 0.00 0.00 2.45
2556 2672 5.462240 AGGACACCAGAGATGAGAATGATA 58.538 41.667 0.00 0.00 0.00 2.15
2557 2673 6.083383 AGGACACCAGAGATGAGAATGATAT 58.917 40.000 0.00 0.00 0.00 1.63
2558 2674 6.558014 AGGACACCAGAGATGAGAATGATATT 59.442 38.462 0.00 0.00 0.00 1.28
2559 2675 6.873076 GGACACCAGAGATGAGAATGATATTC 59.127 42.308 0.00 0.00 0.00 1.75
2560 2676 7.256261 GGACACCAGAGATGAGAATGATATTCT 60.256 40.741 3.86 3.86 0.00 2.40
2561 2677 8.718158 ACACCAGAGATGAGAATGATATTCTA 57.282 34.615 4.19 0.00 0.00 2.10
2562 2678 8.584157 ACACCAGAGATGAGAATGATATTCTAC 58.416 37.037 4.19 1.01 0.00 2.59
2563 2679 8.034215 CACCAGAGATGAGAATGATATTCTACC 58.966 40.741 4.19 0.00 0.00 3.18
2564 2680 7.732140 ACCAGAGATGAGAATGATATTCTACCA 59.268 37.037 4.19 0.80 0.00 3.25
2565 2681 8.760735 CCAGAGATGAGAATGATATTCTACCAT 58.239 37.037 4.19 5.12 0.00 3.55
2570 2686 9.828039 GATGAGAATGATATTCTACCATATGCA 57.172 33.333 4.19 0.00 0.00 3.96
2571 2687 9.610705 ATGAGAATGATATTCTACCATATGCAC 57.389 33.333 4.19 0.00 0.00 4.57
2572 2688 8.043113 TGAGAATGATATTCTACCATATGCACC 58.957 37.037 4.19 0.00 0.00 5.01
2573 2689 7.044181 AGAATGATATTCTACCATATGCACCG 58.956 38.462 2.39 0.00 0.00 4.94
2574 2690 5.738619 TGATATTCTACCATATGCACCGT 57.261 39.130 0.00 0.00 0.00 4.83
2575 2691 5.478407 TGATATTCTACCATATGCACCGTG 58.522 41.667 0.00 0.00 0.00 4.94
2576 2692 1.948104 TTCTACCATATGCACCGTGC 58.052 50.000 16.93 16.93 45.29 5.34
2585 2701 2.438254 GCACCGTGCATGGATCCA 60.438 61.111 31.74 18.88 44.26 3.41
2586 2702 2.764314 GCACCGTGCATGGATCCAC 61.764 63.158 31.74 5.93 44.26 4.02
2587 2703 1.078214 CACCGTGCATGGATCCACT 60.078 57.895 31.74 4.64 0.00 4.00
2588 2704 1.078214 ACCGTGCATGGATCCACTG 60.078 57.895 31.74 16.94 0.00 3.66
2589 2705 1.078214 CCGTGCATGGATCCACTGT 60.078 57.895 21.08 0.00 0.00 3.55
2590 2706 1.091771 CCGTGCATGGATCCACTGTC 61.092 60.000 21.08 12.47 0.00 3.51
2591 2707 1.091771 CGTGCATGGATCCACTGTCC 61.092 60.000 18.99 9.97 36.26 4.02
2598 2714 3.912496 TGGATCCACTGTCCATAGTTG 57.088 47.619 11.44 0.00 40.72 3.16
2599 2715 2.092968 TGGATCCACTGTCCATAGTTGC 60.093 50.000 11.44 0.00 40.72 4.17
2600 2716 2.171448 GGATCCACTGTCCATAGTTGCT 59.829 50.000 6.95 0.00 35.76 3.91
2601 2717 3.370953 GGATCCACTGTCCATAGTTGCTT 60.371 47.826 6.95 0.00 35.76 3.91
2602 2718 3.788227 TCCACTGTCCATAGTTGCTTT 57.212 42.857 0.00 0.00 0.00 3.51
2603 2719 4.098914 TCCACTGTCCATAGTTGCTTTT 57.901 40.909 0.00 0.00 0.00 2.27
2604 2720 4.072131 TCCACTGTCCATAGTTGCTTTTC 58.928 43.478 0.00 0.00 0.00 2.29
2605 2721 3.820467 CCACTGTCCATAGTTGCTTTTCA 59.180 43.478 0.00 0.00 0.00 2.69
2606 2722 4.278170 CCACTGTCCATAGTTGCTTTTCAA 59.722 41.667 0.00 0.00 0.00 2.69
2607 2723 5.047802 CCACTGTCCATAGTTGCTTTTCAAT 60.048 40.000 0.00 0.00 36.99 2.57
2608 2724 6.088824 CACTGTCCATAGTTGCTTTTCAATC 58.911 40.000 0.00 0.00 36.99 2.67
2609 2725 5.106555 ACTGTCCATAGTTGCTTTTCAATCG 60.107 40.000 0.00 0.00 36.99 3.34
2610 2726 4.759693 TGTCCATAGTTGCTTTTCAATCGT 59.240 37.500 0.00 0.00 36.99 3.73
2611 2727 5.106712 TGTCCATAGTTGCTTTTCAATCGTC 60.107 40.000 0.00 0.00 36.99 4.20
2612 2728 4.394920 TCCATAGTTGCTTTTCAATCGTCC 59.605 41.667 0.00 0.00 36.99 4.79
2613 2729 4.396166 CCATAGTTGCTTTTCAATCGTCCT 59.604 41.667 0.00 0.00 36.99 3.85
2614 2730 5.584649 CCATAGTTGCTTTTCAATCGTCCTA 59.415 40.000 0.00 0.00 36.99 2.94
2615 2731 6.238211 CCATAGTTGCTTTTCAATCGTCCTAG 60.238 42.308 0.00 0.00 36.99 3.02
2616 2732 3.437049 AGTTGCTTTTCAATCGTCCTAGC 59.563 43.478 0.00 0.00 36.99 3.42
2617 2733 3.052455 TGCTTTTCAATCGTCCTAGCA 57.948 42.857 0.00 0.00 35.05 3.49
2618 2734 3.407698 TGCTTTTCAATCGTCCTAGCAA 58.592 40.909 0.00 0.00 34.55 3.91
2619 2735 3.818210 TGCTTTTCAATCGTCCTAGCAAA 59.182 39.130 0.00 0.00 34.55 3.68
2620 2736 4.458989 TGCTTTTCAATCGTCCTAGCAAAT 59.541 37.500 0.00 0.00 34.55 2.32
2621 2737 5.048083 TGCTTTTCAATCGTCCTAGCAAATT 60.048 36.000 0.00 0.00 34.55 1.82
2622 2738 5.863935 GCTTTTCAATCGTCCTAGCAAATTT 59.136 36.000 0.00 0.00 0.00 1.82
2623 2739 6.366061 GCTTTTCAATCGTCCTAGCAAATTTT 59.634 34.615 0.00 0.00 0.00 1.82
2624 2740 7.619982 GCTTTTCAATCGTCCTAGCAAATTTTG 60.620 37.037 4.72 4.72 0.00 2.44
2625 2741 5.957842 TCAATCGTCCTAGCAAATTTTGT 57.042 34.783 10.65 1.20 0.00 2.83
2626 2742 6.325919 TCAATCGTCCTAGCAAATTTTGTT 57.674 33.333 10.65 7.30 0.00 2.83
2627 2743 6.744112 TCAATCGTCCTAGCAAATTTTGTTT 58.256 32.000 10.65 2.93 0.00 2.83
2628 2744 6.640499 TCAATCGTCCTAGCAAATTTTGTTTG 59.360 34.615 10.65 5.84 0.00 2.93
2629 2745 5.508200 TCGTCCTAGCAAATTTTGTTTGT 57.492 34.783 10.65 0.00 0.00 2.83
2630 2746 5.897050 TCGTCCTAGCAAATTTTGTTTGTT 58.103 33.333 10.65 0.00 0.00 2.83
2631 2747 5.974751 TCGTCCTAGCAAATTTTGTTTGTTC 59.025 36.000 10.65 1.63 0.00 3.18
2632 2748 5.174943 CGTCCTAGCAAATTTTGTTTGTTCC 59.825 40.000 10.65 0.00 0.00 3.62
2633 2749 6.045955 GTCCTAGCAAATTTTGTTTGTTCCA 58.954 36.000 10.65 0.00 0.00 3.53
2634 2750 6.200854 GTCCTAGCAAATTTTGTTTGTTCCAG 59.799 38.462 10.65 0.00 0.00 3.86
2635 2751 6.097554 TCCTAGCAAATTTTGTTTGTTCCAGA 59.902 34.615 10.65 0.00 0.00 3.86
2636 2752 6.200854 CCTAGCAAATTTTGTTTGTTCCAGAC 59.799 38.462 10.65 0.00 0.00 3.51
2637 2753 5.733676 AGCAAATTTTGTTTGTTCCAGACT 58.266 33.333 10.65 0.00 0.00 3.24
2638 2754 5.581874 AGCAAATTTTGTTTGTTCCAGACTG 59.418 36.000 10.65 0.00 0.00 3.51
2639 2755 5.351189 GCAAATTTTGTTTGTTCCAGACTGT 59.649 36.000 10.65 0.00 0.00 3.55
2640 2756 6.128309 GCAAATTTTGTTTGTTCCAGACTGTT 60.128 34.615 10.65 0.00 0.00 3.16
2641 2757 6.966435 AATTTTGTTTGTTCCAGACTGTTG 57.034 33.333 0.93 0.00 0.00 3.33
2642 2758 3.502191 TTGTTTGTTCCAGACTGTTGC 57.498 42.857 0.93 0.00 0.00 4.17
2643 2759 2.441410 TGTTTGTTCCAGACTGTTGCA 58.559 42.857 0.93 0.00 0.00 4.08
2644 2760 3.023119 TGTTTGTTCCAGACTGTTGCAT 58.977 40.909 0.93 0.00 0.00 3.96
2645 2761 3.066621 TGTTTGTTCCAGACTGTTGCATC 59.933 43.478 0.93 0.00 0.00 3.91
2646 2762 1.896220 TGTTCCAGACTGTTGCATCC 58.104 50.000 0.93 0.00 0.00 3.51
2647 2763 1.168714 GTTCCAGACTGTTGCATCCC 58.831 55.000 0.93 0.00 0.00 3.85
2648 2764 1.067295 TTCCAGACTGTTGCATCCCT 58.933 50.000 0.93 0.00 0.00 4.20
2649 2765 1.067295 TCCAGACTGTTGCATCCCTT 58.933 50.000 0.93 0.00 0.00 3.95
2650 2766 1.003580 TCCAGACTGTTGCATCCCTTC 59.996 52.381 0.93 0.00 0.00 3.46
2651 2767 1.081892 CAGACTGTTGCATCCCTTCG 58.918 55.000 0.00 0.00 0.00 3.79
2652 2768 0.036010 AGACTGTTGCATCCCTTCGG 60.036 55.000 0.00 0.00 0.00 4.30
2653 2769 1.648467 GACTGTTGCATCCCTTCGGC 61.648 60.000 0.00 0.00 0.00 5.54
2654 2770 2.745884 TGTTGCATCCCTTCGGCG 60.746 61.111 0.00 0.00 0.00 6.46
2655 2771 3.508840 GTTGCATCCCTTCGGCGG 61.509 66.667 7.21 0.00 0.00 6.13
2659 2775 2.974698 CATCCCTTCGGCGGCATC 60.975 66.667 10.53 0.00 0.00 3.91
2660 2776 4.256180 ATCCCTTCGGCGGCATCC 62.256 66.667 10.53 0.00 0.00 3.51
2662 2778 4.569180 CCCTTCGGCGGCATCCAT 62.569 66.667 10.53 0.00 0.00 3.41
2663 2779 2.974698 CCTTCGGCGGCATCCATC 60.975 66.667 10.53 0.00 0.00 3.51
2664 2780 2.109799 CTTCGGCGGCATCCATCT 59.890 61.111 10.53 0.00 0.00 2.90
2665 2781 2.203056 TTCGGCGGCATCCATCTG 60.203 61.111 10.53 0.00 0.00 2.90
2671 2787 1.681666 CGGCATCCATCTGGGCTAT 59.318 57.895 0.00 0.00 36.21 2.97
2759 2875 0.831966 AATAATACACCGTCGGCCCA 59.168 50.000 12.28 0.00 0.00 5.36
2787 2903 1.380112 GACTGGTCCTAGTCGGCCT 60.380 63.158 0.00 0.00 37.88 5.19
2900 3036 4.008933 GTCCAGTCGGCCTGCTGT 62.009 66.667 18.19 0.00 40.06 4.40
2901 3037 4.007644 TCCAGTCGGCCTGCTGTG 62.008 66.667 18.19 11.73 40.06 3.66
2911 3047 2.046023 CTGCTGTGGGCCGATTGA 60.046 61.111 0.00 0.00 40.92 2.57
2969 3134 2.425592 CTGTTGTGGGCCGACTGA 59.574 61.111 19.42 4.97 0.00 3.41
3067 3233 2.600470 GCGCAACCCTTTCCCCTT 60.600 61.111 0.30 0.00 0.00 3.95
3106 3272 2.627839 TTTCCCGCCACCCGTTTCTT 62.628 55.000 0.00 0.00 34.38 2.52
3113 3279 1.365699 CCACCCGTTTCTTATCCACG 58.634 55.000 0.00 0.00 0.00 4.94
3148 3314 1.710996 TTCCCGCCAACTCTTTCCCA 61.711 55.000 0.00 0.00 0.00 4.37
3152 3318 0.609131 CGCCAACTCTTTCCCACCAT 60.609 55.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.678072 ACGTGACGTGATGATTGTTTAGG 59.322 43.478 10.91 0.00 39.18 2.69
39 40 1.749063 CAGACAGGGATGCGTGTAGTA 59.251 52.381 12.75 0.00 0.00 1.82
40 41 0.532573 CAGACAGGGATGCGTGTAGT 59.467 55.000 12.75 0.71 0.00 2.73
41 42 0.817654 TCAGACAGGGATGCGTGTAG 59.182 55.000 12.75 8.79 0.00 2.74
42 43 1.262417 TTCAGACAGGGATGCGTGTA 58.738 50.000 12.75 0.00 0.00 2.90
43 44 0.615331 ATTCAGACAGGGATGCGTGT 59.385 50.000 12.62 12.62 0.00 4.49
44 45 1.742761 AATTCAGACAGGGATGCGTG 58.257 50.000 5.28 5.28 0.00 5.34
45 46 3.845781 ATAATTCAGACAGGGATGCGT 57.154 42.857 0.00 0.00 0.00 5.24
46 47 5.406780 GTCTAATAATTCAGACAGGGATGCG 59.593 44.000 8.96 0.00 40.74 4.73
47 48 6.291377 TGTCTAATAATTCAGACAGGGATGC 58.709 40.000 11.45 0.00 44.70 3.91
84 85 9.214962 AGCCCTATCTAGTCTTATTACAAGTTT 57.785 33.333 0.00 0.00 0.00 2.66
86 87 9.523168 CTAGCCCTATCTAGTCTTATTACAAGT 57.477 37.037 0.00 0.00 33.19 3.16
87 88 8.463607 GCTAGCCCTATCTAGTCTTATTACAAG 58.536 40.741 2.29 0.00 38.58 3.16
88 89 7.948447 TGCTAGCCCTATCTAGTCTTATTACAA 59.052 37.037 13.29 0.00 38.58 2.41
89 90 7.393796 GTGCTAGCCCTATCTAGTCTTATTACA 59.606 40.741 13.29 0.00 38.58 2.41
93 94 6.147437 AGTGCTAGCCCTATCTAGTCTTAT 57.853 41.667 13.29 0.00 38.58 1.73
94 95 5.562635 GAGTGCTAGCCCTATCTAGTCTTA 58.437 45.833 13.29 0.00 38.58 2.10
95 96 4.403734 GAGTGCTAGCCCTATCTAGTCTT 58.596 47.826 13.29 0.00 38.58 3.01
97 98 2.745281 CGAGTGCTAGCCCTATCTAGTC 59.255 54.545 13.29 3.04 38.58 2.59
98 99 2.106857 ACGAGTGCTAGCCCTATCTAGT 59.893 50.000 13.29 6.59 38.58 2.57
99 100 2.785562 ACGAGTGCTAGCCCTATCTAG 58.214 52.381 13.29 6.01 39.17 2.43
100 101 2.953284 ACGAGTGCTAGCCCTATCTA 57.047 50.000 13.29 0.00 0.00 1.98
101 102 2.953284 TACGAGTGCTAGCCCTATCT 57.047 50.000 13.29 2.83 0.00 1.98
102 103 3.759618 AGAATACGAGTGCTAGCCCTATC 59.240 47.826 13.29 3.97 0.00 2.08
103 104 3.768878 AGAATACGAGTGCTAGCCCTAT 58.231 45.455 13.29 0.18 0.00 2.57
104 105 3.225177 AGAATACGAGTGCTAGCCCTA 57.775 47.619 13.29 0.00 0.00 3.53
105 106 2.074729 AGAATACGAGTGCTAGCCCT 57.925 50.000 13.29 5.64 0.00 5.19
106 107 3.285816 GTAGAATACGAGTGCTAGCCC 57.714 52.381 13.29 0.00 0.00 5.19
118 119 1.133790 ACGTCGGCACCAGTAGAATAC 59.866 52.381 0.00 0.00 43.47 1.89
119 120 1.133598 CACGTCGGCACCAGTAGAATA 59.866 52.381 0.00 0.00 0.00 1.75
120 121 0.108804 CACGTCGGCACCAGTAGAAT 60.109 55.000 0.00 0.00 0.00 2.40
121 122 1.287815 CACGTCGGCACCAGTAGAA 59.712 57.895 0.00 0.00 0.00 2.10
122 123 2.632544 CCACGTCGGCACCAGTAGA 61.633 63.158 0.00 0.00 0.00 2.59
123 124 2.126071 CCACGTCGGCACCAGTAG 60.126 66.667 0.00 0.00 0.00 2.57
124 125 2.598099 TCCACGTCGGCACCAGTA 60.598 61.111 0.00 0.00 33.14 2.74
125 126 3.991051 CTCCACGTCGGCACCAGT 61.991 66.667 0.00 0.00 33.14 4.00
126 127 2.543687 CTACTCCACGTCGGCACCAG 62.544 65.000 0.00 0.00 33.14 4.00
127 128 2.598099 TACTCCACGTCGGCACCA 60.598 61.111 0.00 0.00 33.14 4.17
128 129 1.664321 ATCTACTCCACGTCGGCACC 61.664 60.000 0.00 0.00 33.14 5.01
129 130 0.248539 GATCTACTCCACGTCGGCAC 60.249 60.000 0.00 0.00 33.14 5.01
130 131 1.712018 CGATCTACTCCACGTCGGCA 61.712 60.000 0.00 0.00 33.14 5.69
131 132 1.009900 CGATCTACTCCACGTCGGC 60.010 63.158 0.00 0.00 33.14 5.54
132 133 1.647629 CCGATCTACTCCACGTCGG 59.352 63.158 0.00 0.00 44.72 4.79
133 134 0.027716 CACCGATCTACTCCACGTCG 59.972 60.000 0.00 0.00 0.00 5.12
134 135 1.376543 TCACCGATCTACTCCACGTC 58.623 55.000 0.00 0.00 0.00 4.34
135 136 2.054232 ATCACCGATCTACTCCACGT 57.946 50.000 0.00 0.00 0.00 4.49
136 137 2.095668 GCTATCACCGATCTACTCCACG 60.096 54.545 0.00 0.00 0.00 4.94
137 138 3.150767 AGCTATCACCGATCTACTCCAC 58.849 50.000 0.00 0.00 0.00 4.02
138 139 3.181443 TGAGCTATCACCGATCTACTCCA 60.181 47.826 0.00 0.00 0.00 3.86
139 140 3.413327 TGAGCTATCACCGATCTACTCC 58.587 50.000 0.00 0.00 0.00 3.85
140 141 3.119990 GCTGAGCTATCACCGATCTACTC 60.120 52.174 0.00 0.00 0.00 2.59
141 142 2.817258 GCTGAGCTATCACCGATCTACT 59.183 50.000 0.00 0.00 0.00 2.57
142 143 2.817258 AGCTGAGCTATCACCGATCTAC 59.183 50.000 4.49 0.00 36.99 2.59
143 144 2.816672 CAGCTGAGCTATCACCGATCTA 59.183 50.000 8.42 0.00 36.40 1.98
144 145 1.612950 CAGCTGAGCTATCACCGATCT 59.387 52.381 8.42 0.00 36.40 2.75
145 146 1.339610 ACAGCTGAGCTATCACCGATC 59.660 52.381 23.35 0.00 36.40 3.69
146 147 1.407936 ACAGCTGAGCTATCACCGAT 58.592 50.000 23.35 0.00 36.40 4.18
147 148 1.134995 CAACAGCTGAGCTATCACCGA 60.135 52.381 23.35 0.00 36.40 4.69
148 149 1.284657 CAACAGCTGAGCTATCACCG 58.715 55.000 23.35 0.00 36.40 4.94
149 150 1.065854 ACCAACAGCTGAGCTATCACC 60.066 52.381 23.35 0.00 36.40 4.02
150 151 2.393271 ACCAACAGCTGAGCTATCAC 57.607 50.000 23.35 0.00 36.40 3.06
151 152 3.181462 CCATACCAACAGCTGAGCTATCA 60.181 47.826 23.35 0.00 36.40 2.15
152 153 3.070159 TCCATACCAACAGCTGAGCTATC 59.930 47.826 23.35 0.00 36.40 2.08
153 154 3.041211 TCCATACCAACAGCTGAGCTAT 58.959 45.455 23.35 6.81 36.40 2.97
154 155 2.432146 CTCCATACCAACAGCTGAGCTA 59.568 50.000 23.35 4.62 36.40 3.32
155 156 1.209019 CTCCATACCAACAGCTGAGCT 59.791 52.381 23.35 0.00 40.77 4.09
156 157 1.208052 TCTCCATACCAACAGCTGAGC 59.792 52.381 23.35 0.00 0.00 4.26
157 158 2.741228 GCTCTCCATACCAACAGCTGAG 60.741 54.545 23.35 12.34 0.00 3.35
158 159 1.208052 GCTCTCCATACCAACAGCTGA 59.792 52.381 23.35 0.00 0.00 4.26
159 160 1.209019 AGCTCTCCATACCAACAGCTG 59.791 52.381 13.48 13.48 35.88 4.24
160 161 1.209019 CAGCTCTCCATACCAACAGCT 59.791 52.381 0.00 0.00 37.72 4.24
161 162 1.661341 CAGCTCTCCATACCAACAGC 58.339 55.000 0.00 0.00 0.00 4.40
162 163 1.556911 ACCAGCTCTCCATACCAACAG 59.443 52.381 0.00 0.00 0.00 3.16
163 164 1.278985 CACCAGCTCTCCATACCAACA 59.721 52.381 0.00 0.00 0.00 3.33
164 165 1.407437 CCACCAGCTCTCCATACCAAC 60.407 57.143 0.00 0.00 0.00 3.77
165 166 0.911769 CCACCAGCTCTCCATACCAA 59.088 55.000 0.00 0.00 0.00 3.67
166 167 0.252696 ACCACCAGCTCTCCATACCA 60.253 55.000 0.00 0.00 0.00 3.25
167 168 0.912486 AACCACCAGCTCTCCATACC 59.088 55.000 0.00 0.00 0.00 2.73
168 169 1.279271 ACAACCACCAGCTCTCCATAC 59.721 52.381 0.00 0.00 0.00 2.39
177 178 2.730094 CAGCCAACAACCACCAGC 59.270 61.111 0.00 0.00 0.00 4.85
192 193 1.227263 CTCCCGCGTCCATAACCAG 60.227 63.158 4.92 0.00 0.00 4.00
333 334 1.115467 GACCGAGTCCAGGATGTCAT 58.885 55.000 0.00 0.00 0.00 3.06
411 420 6.980416 ACTAGTATCCTAGACAAACATCCC 57.020 41.667 0.00 0.00 42.90 3.85
482 495 4.954202 ACCGAGTCATAGTTATGAACTCCA 59.046 41.667 16.87 0.00 43.65 3.86
496 509 3.682696 TCAGTACTGTACACCGAGTCAT 58.317 45.455 21.99 0.00 0.00 3.06
503 525 4.217767 TCACACTCATCAGTACTGTACACC 59.782 45.833 21.99 0.00 0.00 4.16
516 538 6.257411 CCACTCAGTCATAAATCACACTCATC 59.743 42.308 0.00 0.00 0.00 2.92
534 556 1.071471 ACTGGTTTCGGCCACTCAG 59.929 57.895 2.24 5.30 34.36 3.35
539 561 1.527380 GTTCCACTGGTTTCGGCCA 60.527 57.895 2.24 0.00 36.97 5.36
543 565 3.363575 CGTACAATGTTCCACTGGTTTCG 60.364 47.826 0.00 0.00 0.00 3.46
552 574 4.636648 AGTTGTTTGACGTACAATGTTCCA 59.363 37.500 5.72 0.00 37.77 3.53
654 681 9.349713 CAAAATAATGCCAATAAGGTACTCCTA 57.650 33.333 0.00 0.00 44.35 2.94
663 690 8.984891 TTGTCACTCAAAATAATGCCAATAAG 57.015 30.769 0.00 0.00 32.64 1.73
681 708 6.647067 GTCTGCTTGTTCTACTATTTGTCACT 59.353 38.462 0.00 0.00 0.00 3.41
857 887 5.544562 AGGGTTTATATAGGAGCAGGAAGAC 59.455 44.000 0.00 0.00 0.00 3.01
914 944 1.137086 CTAATCCTCTCACACGGGTGG 59.863 57.143 19.60 9.03 45.32 4.61
919 949 2.621055 CCCTCTCTAATCCTCTCACACG 59.379 54.545 0.00 0.00 0.00 4.49
920 950 2.364002 GCCCTCTCTAATCCTCTCACAC 59.636 54.545 0.00 0.00 0.00 3.82
921 951 2.023984 TGCCCTCTCTAATCCTCTCACA 60.024 50.000 0.00 0.00 0.00 3.58
922 952 2.672098 TGCCCTCTCTAATCCTCTCAC 58.328 52.381 0.00 0.00 0.00 3.51
923 953 3.505386 GATGCCCTCTCTAATCCTCTCA 58.495 50.000 0.00 0.00 0.00 3.27
924 954 2.831526 GGATGCCCTCTCTAATCCTCTC 59.168 54.545 0.00 0.00 36.46 3.20
925 955 2.180973 TGGATGCCCTCTCTAATCCTCT 59.819 50.000 0.00 0.00 39.51 3.69
1338 1390 1.616865 ACAGCGTACAAACTGCCTAGA 59.383 47.619 7.30 0.00 37.42 2.43
1399 1451 1.070786 GCAAGGACGAGGTGGACAA 59.929 57.895 0.00 0.00 0.00 3.18
1638 1690 4.719369 GCGACCTCAACGAGCGGT 62.719 66.667 0.00 0.00 0.00 5.68
1806 1858 4.856801 AATGCCGCCGCCTCGATT 62.857 61.111 0.00 0.00 0.00 3.34
1896 1948 3.986006 GTGACGAGCCCCACGACA 61.986 66.667 0.00 0.00 33.94 4.35
2223 2293 5.422214 ACCCTACTCTTGTATTTCCTGTG 57.578 43.478 0.00 0.00 0.00 3.66
2230 2300 6.952358 TCTCTGTGTTACCCTACTCTTGTATT 59.048 38.462 0.00 0.00 0.00 1.89
2337 2448 5.769484 ATTCCTGAAGAAGCAGCAATATG 57.231 39.130 0.00 0.00 38.07 1.78
2389 2505 4.385748 GTCAATAAAAGCTTCCCGCAAAAG 59.614 41.667 0.00 0.00 42.61 2.27
2413 2529 3.568430 AGTCTTTTGAATCCCCGTTTGAC 59.432 43.478 0.00 0.00 0.00 3.18
2452 2568 4.098501 CCCATAACTTCTGCCATCTTTTCC 59.901 45.833 0.00 0.00 0.00 3.13
2472 2588 1.451449 TTGCTACCTTTTCCCTCCCA 58.549 50.000 0.00 0.00 0.00 4.37
2473 2589 2.168496 GTTTGCTACCTTTTCCCTCCC 58.832 52.381 0.00 0.00 0.00 4.30
2474 2590 1.810755 CGTTTGCTACCTTTTCCCTCC 59.189 52.381 0.00 0.00 0.00 4.30
2475 2591 2.501261 ACGTTTGCTACCTTTTCCCTC 58.499 47.619 0.00 0.00 0.00 4.30
2476 2592 2.651382 ACGTTTGCTACCTTTTCCCT 57.349 45.000 0.00 0.00 0.00 4.20
2477 2593 4.216902 ACATAACGTTTGCTACCTTTTCCC 59.783 41.667 5.91 0.00 0.00 3.97
2478 2594 5.366829 ACATAACGTTTGCTACCTTTTCC 57.633 39.130 5.91 0.00 0.00 3.13
2479 2595 6.432107 TCAACATAACGTTTGCTACCTTTTC 58.568 36.000 5.91 0.00 34.86 2.29
2480 2596 6.038936 ACTCAACATAACGTTTGCTACCTTTT 59.961 34.615 5.91 0.00 34.86 2.27
2481 2597 5.529800 ACTCAACATAACGTTTGCTACCTTT 59.470 36.000 5.91 0.00 34.86 3.11
2482 2598 5.061179 ACTCAACATAACGTTTGCTACCTT 58.939 37.500 5.91 0.00 34.86 3.50
2483 2599 4.638304 ACTCAACATAACGTTTGCTACCT 58.362 39.130 5.91 0.00 34.86 3.08
2484 2600 5.406175 TGTACTCAACATAACGTTTGCTACC 59.594 40.000 5.91 0.00 34.86 3.18
2485 2601 6.145048 AGTGTACTCAACATAACGTTTGCTAC 59.855 38.462 5.91 2.81 41.10 3.58
2486 2602 6.218019 AGTGTACTCAACATAACGTTTGCTA 58.782 36.000 5.91 0.00 41.10 3.49
2487 2603 5.054477 AGTGTACTCAACATAACGTTTGCT 58.946 37.500 5.91 0.00 41.10 3.91
2488 2604 5.338614 AGTGTACTCAACATAACGTTTGC 57.661 39.130 5.91 0.00 41.10 3.68
2489 2605 6.399249 CGGTAGTGTACTCAACATAACGTTTG 60.399 42.308 5.91 7.50 41.10 2.93
2490 2606 5.630680 CGGTAGTGTACTCAACATAACGTTT 59.369 40.000 5.91 0.00 41.10 3.60
2491 2607 5.156355 CGGTAGTGTACTCAACATAACGTT 58.844 41.667 5.88 5.88 41.10 3.99
2492 2608 4.216257 ACGGTAGTGTACTCAACATAACGT 59.784 41.667 0.00 0.00 41.10 3.99
2493 2609 4.726416 ACGGTAGTGTACTCAACATAACG 58.274 43.478 0.00 0.00 41.10 3.18
2494 2610 4.790140 CGACGGTAGTGTACTCAACATAAC 59.210 45.833 0.00 0.00 41.10 1.89
2495 2611 4.672542 GCGACGGTAGTGTACTCAACATAA 60.673 45.833 0.00 0.00 41.10 1.90
2496 2612 3.181507 GCGACGGTAGTGTACTCAACATA 60.182 47.826 0.00 0.00 41.10 2.29
2497 2613 2.415090 GCGACGGTAGTGTACTCAACAT 60.415 50.000 0.00 0.00 41.10 2.71
2498 2614 1.069022 GCGACGGTAGTGTACTCAACA 60.069 52.381 0.00 0.00 35.06 3.33
2499 2615 1.069022 TGCGACGGTAGTGTACTCAAC 60.069 52.381 0.00 0.00 0.00 3.18
2500 2616 1.237533 TGCGACGGTAGTGTACTCAA 58.762 50.000 0.00 0.00 0.00 3.02
2501 2617 1.237533 TTGCGACGGTAGTGTACTCA 58.762 50.000 0.00 0.00 0.00 3.41
2502 2618 2.336554 TTTGCGACGGTAGTGTACTC 57.663 50.000 0.00 0.00 0.00 2.59
2503 2619 2.798976 TTTTGCGACGGTAGTGTACT 57.201 45.000 0.00 0.00 0.00 2.73
2504 2620 3.919804 TGTATTTTGCGACGGTAGTGTAC 59.080 43.478 0.00 0.00 0.00 2.90
2505 2621 4.171663 TGTATTTTGCGACGGTAGTGTA 57.828 40.909 0.00 0.00 0.00 2.90
2506 2622 3.029320 TGTATTTTGCGACGGTAGTGT 57.971 42.857 0.00 0.00 0.00 3.55
2507 2623 4.391358 CTTTGTATTTTGCGACGGTAGTG 58.609 43.478 0.00 0.00 0.00 2.74
2508 2624 3.434299 CCTTTGTATTTTGCGACGGTAGT 59.566 43.478 0.00 0.00 0.00 2.73
2509 2625 3.434299 ACCTTTGTATTTTGCGACGGTAG 59.566 43.478 0.00 0.00 0.00 3.18
2510 2626 3.186817 CACCTTTGTATTTTGCGACGGTA 59.813 43.478 0.00 0.00 0.00 4.02
2511 2627 2.031508 CACCTTTGTATTTTGCGACGGT 60.032 45.455 0.00 0.00 0.00 4.83
2512 2628 2.224549 TCACCTTTGTATTTTGCGACGG 59.775 45.455 0.00 0.00 0.00 4.79
2513 2629 3.479006 CTCACCTTTGTATTTTGCGACG 58.521 45.455 0.00 0.00 0.00 5.12
2514 2630 3.500680 TCCTCACCTTTGTATTTTGCGAC 59.499 43.478 0.00 0.00 0.00 5.19
2515 2631 3.500680 GTCCTCACCTTTGTATTTTGCGA 59.499 43.478 0.00 0.00 0.00 5.10
2516 2632 3.252215 TGTCCTCACCTTTGTATTTTGCG 59.748 43.478 0.00 0.00 0.00 4.85
2517 2633 4.546570 GTGTCCTCACCTTTGTATTTTGC 58.453 43.478 0.00 0.00 38.51 3.68
2530 2646 2.451490 TCTCATCTCTGGTGTCCTCAC 58.549 52.381 0.00 0.00 43.19 3.51
2531 2647 2.907458 TCTCATCTCTGGTGTCCTCA 57.093 50.000 0.00 0.00 0.00 3.86
2532 2648 3.703556 TCATTCTCATCTCTGGTGTCCTC 59.296 47.826 0.00 0.00 0.00 3.71
2533 2649 3.717576 TCATTCTCATCTCTGGTGTCCT 58.282 45.455 0.00 0.00 0.00 3.85
2534 2650 4.686191 ATCATTCTCATCTCTGGTGTCC 57.314 45.455 0.00 0.00 0.00 4.02
2535 2651 7.669427 AGAATATCATTCTCATCTCTGGTGTC 58.331 38.462 0.00 0.00 0.00 3.67
2536 2652 7.615039 AGAATATCATTCTCATCTCTGGTGT 57.385 36.000 0.00 0.00 0.00 4.16
2537 2653 8.034215 GGTAGAATATCATTCTCATCTCTGGTG 58.966 40.741 4.73 0.00 0.00 4.17
2538 2654 7.732140 TGGTAGAATATCATTCTCATCTCTGGT 59.268 37.037 4.73 0.00 0.00 4.00
2539 2655 8.131847 TGGTAGAATATCATTCTCATCTCTGG 57.868 38.462 4.73 0.00 0.00 3.86
2544 2660 9.828039 TGCATATGGTAGAATATCATTCTCATC 57.172 33.333 4.56 0.00 40.05 2.92
2545 2661 9.610705 GTGCATATGGTAGAATATCATTCTCAT 57.389 33.333 4.56 6.53 40.05 2.90
2546 2662 8.043113 GGTGCATATGGTAGAATATCATTCTCA 58.957 37.037 4.56 0.00 40.05 3.27
2547 2663 7.223582 CGGTGCATATGGTAGAATATCATTCTC 59.776 40.741 4.56 0.00 40.05 2.87
2548 2664 7.044181 CGGTGCATATGGTAGAATATCATTCT 58.956 38.462 4.56 6.64 40.05 2.40
2549 2665 6.818644 ACGGTGCATATGGTAGAATATCATTC 59.181 38.462 4.56 0.00 40.05 2.67
2550 2666 6.595326 CACGGTGCATATGGTAGAATATCATT 59.405 38.462 4.56 0.00 40.05 2.57
2551 2667 6.108687 CACGGTGCATATGGTAGAATATCAT 58.891 40.000 4.56 0.00 46.01 2.45
2552 2668 5.478407 CACGGTGCATATGGTAGAATATCA 58.522 41.667 4.56 0.00 35.27 2.15
2553 2669 4.330074 GCACGGTGCATATGGTAGAATATC 59.670 45.833 27.10 0.00 44.26 1.63
2554 2670 4.253685 GCACGGTGCATATGGTAGAATAT 58.746 43.478 27.10 0.00 44.26 1.28
2555 2671 3.659786 GCACGGTGCATATGGTAGAATA 58.340 45.455 27.10 0.00 44.26 1.75
2556 2672 2.494059 GCACGGTGCATATGGTAGAAT 58.506 47.619 27.10 0.00 44.26 2.40
2557 2673 1.948104 GCACGGTGCATATGGTAGAA 58.052 50.000 27.10 0.00 44.26 2.10
2558 2674 3.678921 GCACGGTGCATATGGTAGA 57.321 52.632 27.10 0.00 44.26 2.59
2568 2684 2.438254 TGGATCCATGCACGGTGC 60.438 61.111 25.55 25.55 45.29 5.01
2569 2685 3.501396 GTGGATCCATGCACGGTG 58.499 61.111 19.62 3.15 39.29 4.94
2574 2690 2.385777 TGGACAGTGGATCCATGCA 58.614 52.632 19.62 11.03 41.47 3.96
2579 2695 2.171448 AGCAACTATGGACAGTGGATCC 59.829 50.000 4.20 4.20 36.70 3.36
2580 2696 3.550437 AGCAACTATGGACAGTGGATC 57.450 47.619 0.00 0.00 0.00 3.36
2581 2697 4.307032 AAAGCAACTATGGACAGTGGAT 57.693 40.909 0.00 0.00 0.00 3.41
2582 2698 3.788227 AAAGCAACTATGGACAGTGGA 57.212 42.857 0.00 0.00 0.00 4.02
2583 2699 3.820467 TGAAAAGCAACTATGGACAGTGG 59.180 43.478 0.00 0.00 0.00 4.00
2584 2700 5.437289 TTGAAAAGCAACTATGGACAGTG 57.563 39.130 0.00 0.00 0.00 3.66
2585 2701 5.106555 CGATTGAAAAGCAACTATGGACAGT 60.107 40.000 0.00 0.00 39.78 3.55
2586 2702 5.106555 ACGATTGAAAAGCAACTATGGACAG 60.107 40.000 0.00 0.00 39.78 3.51
2587 2703 4.759693 ACGATTGAAAAGCAACTATGGACA 59.240 37.500 0.00 0.00 39.78 4.02
2588 2704 5.296813 ACGATTGAAAAGCAACTATGGAC 57.703 39.130 0.00 0.00 39.78 4.02
2589 2705 4.394920 GGACGATTGAAAAGCAACTATGGA 59.605 41.667 0.00 0.00 39.78 3.41
2590 2706 4.396166 AGGACGATTGAAAAGCAACTATGG 59.604 41.667 0.00 0.00 39.78 2.74
2591 2707 5.551760 AGGACGATTGAAAAGCAACTATG 57.448 39.130 0.00 0.00 39.78 2.23
2592 2708 5.294552 GCTAGGACGATTGAAAAGCAACTAT 59.705 40.000 0.00 0.00 39.78 2.12
2593 2709 4.630069 GCTAGGACGATTGAAAAGCAACTA 59.370 41.667 0.00 0.00 39.78 2.24
2594 2710 3.437049 GCTAGGACGATTGAAAAGCAACT 59.563 43.478 0.00 0.00 39.78 3.16
2595 2711 3.188460 TGCTAGGACGATTGAAAAGCAAC 59.812 43.478 0.00 0.00 39.78 4.17
2596 2712 3.407698 TGCTAGGACGATTGAAAAGCAA 58.592 40.909 0.00 0.00 41.53 3.91
2597 2713 3.052455 TGCTAGGACGATTGAAAAGCA 57.948 42.857 0.00 0.00 36.23 3.91
2598 2714 4.419522 TTTGCTAGGACGATTGAAAAGC 57.580 40.909 0.00 0.00 0.00 3.51
2599 2715 7.382218 ACAAAATTTGCTAGGACGATTGAAAAG 59.618 33.333 5.52 0.00 0.00 2.27
2600 2716 7.206687 ACAAAATTTGCTAGGACGATTGAAAA 58.793 30.769 5.52 0.00 0.00 2.29
2601 2717 6.744112 ACAAAATTTGCTAGGACGATTGAAA 58.256 32.000 5.52 0.00 0.00 2.69
2602 2718 6.325919 ACAAAATTTGCTAGGACGATTGAA 57.674 33.333 5.52 0.00 0.00 2.69
2603 2719 5.957842 ACAAAATTTGCTAGGACGATTGA 57.042 34.783 5.52 0.00 0.00 2.57
2604 2720 6.420604 ACAAACAAAATTTGCTAGGACGATTG 59.579 34.615 5.52 1.31 32.93 2.67
2605 2721 6.512297 ACAAACAAAATTTGCTAGGACGATT 58.488 32.000 5.52 0.00 32.93 3.34
2606 2722 6.084326 ACAAACAAAATTTGCTAGGACGAT 57.916 33.333 5.52 0.00 32.93 3.73
2607 2723 5.508200 ACAAACAAAATTTGCTAGGACGA 57.492 34.783 5.52 0.00 32.93 4.20
2608 2724 5.174943 GGAACAAACAAAATTTGCTAGGACG 59.825 40.000 5.52 0.00 32.93 4.79
2609 2725 6.045955 TGGAACAAACAAAATTTGCTAGGAC 58.954 36.000 5.52 0.00 31.92 3.85
2610 2726 6.097554 TCTGGAACAAACAAAATTTGCTAGGA 59.902 34.615 5.52 0.00 38.70 2.94
2611 2727 6.200854 GTCTGGAACAAACAAAATTTGCTAGG 59.799 38.462 5.52 0.00 38.70 3.02
2612 2728 6.980397 AGTCTGGAACAAACAAAATTTGCTAG 59.020 34.615 5.52 0.00 38.70 3.42
2613 2729 6.756074 CAGTCTGGAACAAACAAAATTTGCTA 59.244 34.615 5.52 0.00 38.70 3.49
2614 2730 5.581874 CAGTCTGGAACAAACAAAATTTGCT 59.418 36.000 5.52 0.00 38.70 3.91
2615 2731 5.351189 ACAGTCTGGAACAAACAAAATTTGC 59.649 36.000 5.52 0.00 38.70 3.68
2616 2732 6.966435 ACAGTCTGGAACAAACAAAATTTG 57.034 33.333 3.89 3.89 38.70 2.32
2617 2733 6.128309 GCAACAGTCTGGAACAAACAAAATTT 60.128 34.615 4.53 0.00 38.70 1.82
2618 2734 5.351189 GCAACAGTCTGGAACAAACAAAATT 59.649 36.000 4.53 0.00 38.70 1.82
2619 2735 4.869861 GCAACAGTCTGGAACAAACAAAAT 59.130 37.500 4.53 0.00 38.70 1.82
2620 2736 4.241681 GCAACAGTCTGGAACAAACAAAA 58.758 39.130 4.53 0.00 38.70 2.44
2621 2737 3.256879 TGCAACAGTCTGGAACAAACAAA 59.743 39.130 4.53 0.00 38.70 2.83
2622 2738 2.822561 TGCAACAGTCTGGAACAAACAA 59.177 40.909 4.53 0.00 38.70 2.83
2623 2739 2.441410 TGCAACAGTCTGGAACAAACA 58.559 42.857 4.53 0.00 38.70 2.83
2624 2740 3.550842 GGATGCAACAGTCTGGAACAAAC 60.551 47.826 4.53 0.00 38.70 2.93
2625 2741 2.622942 GGATGCAACAGTCTGGAACAAA 59.377 45.455 4.53 0.00 38.70 2.83
2626 2742 2.229792 GGATGCAACAGTCTGGAACAA 58.770 47.619 4.53 0.00 38.70 2.83
2627 2743 1.545428 GGGATGCAACAGTCTGGAACA 60.545 52.381 4.53 0.00 0.00 3.18
2628 2744 1.168714 GGGATGCAACAGTCTGGAAC 58.831 55.000 4.53 0.00 0.00 3.62
2629 2745 1.067295 AGGGATGCAACAGTCTGGAA 58.933 50.000 4.53 0.00 0.00 3.53
2630 2746 1.003580 GAAGGGATGCAACAGTCTGGA 59.996 52.381 4.53 0.00 0.00 3.86
2631 2747 1.457346 GAAGGGATGCAACAGTCTGG 58.543 55.000 4.53 0.00 0.00 3.86
2632 2748 1.081892 CGAAGGGATGCAACAGTCTG 58.918 55.000 0.00 0.00 0.00 3.51
2633 2749 3.540211 CGAAGGGATGCAACAGTCT 57.460 52.632 0.00 0.00 0.00 3.24
2647 2763 2.109799 AGATGGATGCCGCCGAAG 59.890 61.111 0.00 0.00 0.00 3.79
2648 2764 2.203056 CAGATGGATGCCGCCGAA 60.203 61.111 0.00 0.00 0.00 4.30
2649 2765 4.240103 CCAGATGGATGCCGCCGA 62.240 66.667 0.00 0.00 37.39 5.54
2652 2768 2.475371 ATAGCCCAGATGGATGCCGC 62.475 60.000 0.00 0.00 37.39 6.53
2653 2769 0.037303 AATAGCCCAGATGGATGCCG 59.963 55.000 0.00 0.00 37.39 5.69
2654 2770 2.299326 AAATAGCCCAGATGGATGCC 57.701 50.000 0.00 0.00 37.39 4.40
2759 2875 4.008933 GACCAGTCGGCCTGCTGT 62.009 66.667 18.19 9.33 40.06 4.40
2787 2903 3.390521 CCCAGTCGGCCTGCTGTA 61.391 66.667 18.19 0.00 40.06 2.74
2898 3034 2.570415 TTAGTTTCAATCGGCCCACA 57.430 45.000 0.00 0.00 0.00 4.17
2900 3036 2.757868 CCAATTAGTTTCAATCGGCCCA 59.242 45.455 0.00 0.00 0.00 5.36
2901 3037 2.481276 GCCAATTAGTTTCAATCGGCCC 60.481 50.000 0.00 0.00 32.74 5.80
2908 3044 3.005684 CACAGCAGGCCAATTAGTTTCAA 59.994 43.478 5.01 0.00 0.00 2.69
2911 3047 1.895131 CCACAGCAGGCCAATTAGTTT 59.105 47.619 5.01 0.00 0.00 2.66
2955 3120 2.359850 GCATCAGTCGGCCCACAA 60.360 61.111 2.46 0.00 0.00 3.33
2969 3134 7.949690 AATCTGTAATATGGTATGCATGCAT 57.050 32.000 33.92 33.92 40.19 3.96
3029 3195 4.431471 CGCGAAAATACGTCGTAGTTTTGA 60.431 41.667 33.53 6.93 38.78 2.69
3038 3204 0.850391 GGTTGCGCGAAAATACGTCG 60.850 55.000 12.10 0.00 41.46 5.12
3067 3233 5.358725 GGAAAGAGTTGGCGGGAAAATATTA 59.641 40.000 0.00 0.00 0.00 0.98
3148 3314 1.691219 ATGGCAGGAAACGGATGGT 59.309 52.632 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.