Multiple sequence alignment - TraesCS4D01G301900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G301900 chr4D 100.000 4122 0 0 1 4122 470111467 470115588 0.000000e+00 7613.0
1 TraesCS4D01G301900 chr4A 91.027 2151 95 29 530 2635 677934589 677936686 0.000000e+00 2813.0
2 TraesCS4D01G301900 chr4A 93.778 1109 46 8 2624 3719 677936780 677937878 0.000000e+00 1644.0
3 TraesCS4D01G301900 chr4A 90.616 341 23 2 1386 1726 699840785 699841116 1.050000e-120 444.0
4 TraesCS4D01G301900 chr4A 90.964 166 9 4 3748 3911 677938016 677938177 6.940000e-53 219.0
5 TraesCS4D01G301900 chr4A 92.647 136 4 1 3904 4033 677938211 677938346 1.510000e-44 191.0
6 TraesCS4D01G301900 chr4A 95.745 94 4 0 4029 4122 677939553 677939646 7.140000e-33 152.0
7 TraesCS4D01G301900 chr4A 97.500 40 0 1 3714 3753 677937887 677937925 2.660000e-07 67.6
8 TraesCS4D01G301900 chr4B 90.162 1047 60 14 2663 3668 591499007 591500051 0.000000e+00 1323.0
9 TraesCS4D01G301900 chr4B 91.954 870 45 12 1041 1899 591497438 591498293 0.000000e+00 1195.0
10 TraesCS4D01G301900 chr4B 95.382 563 21 4 2055 2614 591498443 591499003 0.000000e+00 891.0
11 TraesCS4D01G301900 chr4B 77.986 427 35 22 450 820 591494861 591495284 3.230000e-51 213.0
12 TraesCS4D01G301900 chr4B 92.481 133 10 0 1932 2064 591498293 591498425 1.510000e-44 191.0
13 TraesCS4D01G301900 chr2D 88.871 638 40 5 1091 1726 640949039 640948431 0.000000e+00 756.0
14 TraesCS4D01G301900 chr2D 95.935 369 15 0 1 369 276936044 276935676 2.120000e-167 599.0
15 TraesCS4D01G301900 chr2D 93.883 376 19 4 1 376 425744110 425743739 7.740000e-157 564.0
16 TraesCS4D01G301900 chr2D 94.309 369 20 1 1 369 488561013 488561380 7.740000e-157 564.0
17 TraesCS4D01G301900 chr2D 93.369 377 23 2 2 377 566485568 566485193 1.290000e-154 556.0
18 TraesCS4D01G301900 chr2D 79.070 602 83 22 3147 3727 632468898 632469477 1.400000e-99 374.0
19 TraesCS4D01G301900 chr7D 95.924 368 15 0 1 368 21002108 21001741 7.630000e-167 597.0
20 TraesCS4D01G301900 chr7D 93.817 372 21 2 1 370 145919345 145918974 3.600000e-155 558.0
21 TraesCS4D01G301900 chr7D 92.746 386 24 3 1 384 127739583 127739966 4.660000e-154 555.0
22 TraesCS4D01G301900 chr6D 94.459 379 20 1 1 378 446133425 446133047 2.140000e-162 582.0
23 TraesCS4D01G301900 chr6B 94.038 369 21 1 1 369 626809546 626809179 3.600000e-155 558.0
24 TraesCS4D01G301900 chr1B 86.432 398 30 5 1095 1490 212225754 212226129 8.240000e-112 414.0
25 TraesCS4D01G301900 chr5B 90.093 323 23 2 1404 1726 34585527 34585214 1.070000e-110 411.0
26 TraesCS4D01G301900 chr2B 79.454 623 84 23 3152 3753 775843104 775843703 6.420000e-108 401.0
27 TraesCS4D01G301900 chr3B 95.798 119 5 0 4004 4122 767860832 767860950 4.210000e-45 193.0
28 TraesCS4D01G301900 chr3B 95.798 119 5 0 4004 4122 767898805 767898923 4.210000e-45 193.0
29 TraesCS4D01G301900 chr3B 95.798 119 5 0 4004 4122 767975322 767975440 4.210000e-45 193.0
30 TraesCS4D01G301900 chr3B 95.041 121 6 0 4002 4122 768079667 768079787 1.510000e-44 191.0
31 TraesCS4D01G301900 chr3B 94.958 119 6 0 4004 4122 768174334 768174452 1.960000e-43 187.0
32 TraesCS4D01G301900 chr6A 94.215 121 7 0 4002 4122 479632907 479632787 7.040000e-43 185.0
33 TraesCS4D01G301900 chr3D 91.935 124 9 1 4000 4122 298048384 298048507 5.480000e-39 172.0
34 TraesCS4D01G301900 chr3D 100.000 28 0 0 2633 2660 311678785 311678758 7.000000e-03 52.8
35 TraesCS4D01G301900 chr7B 96.875 64 2 0 1663 1726 18364310 18364247 1.570000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G301900 chr4D 470111467 470115588 4121 False 7613.000000 7613 100.000000 1 4122 1 chr4D.!!$F1 4121
1 TraesCS4D01G301900 chr4A 677934589 677939646 5057 False 847.766667 2813 93.610167 530 4122 6 chr4A.!!$F2 3592
2 TraesCS4D01G301900 chr4B 591494861 591500051 5190 False 762.600000 1323 89.593000 450 3668 5 chr4B.!!$F1 3218
3 TraesCS4D01G301900 chr2D 640948431 640949039 608 True 756.000000 756 88.871000 1091 1726 1 chr2D.!!$R4 635
4 TraesCS4D01G301900 chr2D 632468898 632469477 579 False 374.000000 374 79.070000 3147 3727 1 chr2D.!!$F2 580
5 TraesCS4D01G301900 chr2B 775843104 775843703 599 False 401.000000 401 79.454000 3152 3753 1 chr2B.!!$F1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
369 370 0.035739 ATGGGCGTTAGTGTTTCCGT 59.964 50.0 0.00 0.00 0.00 4.69 F
474 476 0.037590 TGTTGGGATTTCAGGGTCCG 59.962 55.0 0.00 0.00 35.28 4.79 F
514 516 0.319211 TCCAACCGTTAGTGTGCGAG 60.319 55.0 0.00 0.00 0.00 5.03 F
602 625 0.516322 CAGACATTAACGCGTGCACG 60.516 55.0 34.01 34.01 43.27 5.34 F
924 2657 0.521242 GCAAGCAAATCGTACGCCAG 60.521 55.0 11.24 1.38 0.00 4.85 F
1368 3401 0.549902 TGGGGAAGATGGGCAAGAGA 60.550 55.0 0.00 0.00 0.00 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1677 3712 0.034756 GCCCACCAAAATCCCAACAC 59.965 55.000 0.00 0.00 0.00 3.32 R
2070 4141 4.520111 AGAGCTCTGCACTATGATAGTCTG 59.480 45.833 17.42 3.09 36.76 3.51 R
2085 4156 4.915158 TCATGTCATACTGAGAGCTCTG 57.085 45.455 23.91 10.55 35.10 3.35 R
2414 4485 5.151454 TCATTTTTGTCCCCAACCTTGTAT 58.849 37.500 0.00 0.00 0.00 2.29 R
2653 4829 3.395607 TGTTCATTCCATATCCCTCCCTG 59.604 47.826 0.00 0.00 0.00 4.45 R
3222 5430 1.792367 TCAAAGTGACACGAATCGCAG 59.208 47.619 1.15 0.00 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.717452 AAAAAGAGAGAGCTGCCATCT 57.283 42.857 0.00 4.08 0.00 2.90
23 24 2.695127 AAAGAGAGAGCTGCCATCTG 57.305 50.000 8.74 0.00 0.00 2.90
24 25 0.178533 AAGAGAGAGCTGCCATCTGC 59.821 55.000 8.74 2.28 41.77 4.26
26 27 0.178533 GAGAGAGCTGCCATCTGCTT 59.821 55.000 8.74 0.00 45.71 3.91
27 28 0.107606 AGAGAGCTGCCATCTGCTTG 60.108 55.000 0.00 0.00 45.71 4.01
28 29 1.716826 GAGAGCTGCCATCTGCTTGC 61.717 60.000 0.00 0.00 45.71 4.01
29 30 2.035155 AGCTGCCATCTGCTTGCA 59.965 55.556 0.00 0.00 43.70 4.08
30 31 1.592400 GAGCTGCCATCTGCTTGCAA 61.592 55.000 0.00 0.00 45.71 4.08
31 32 1.153823 GCTGCCATCTGCTTGCAAG 60.154 57.895 22.44 22.44 42.00 4.01
42 43 1.878775 CTTGCAAGCACACTAGGGC 59.121 57.895 14.65 0.00 0.00 5.19
43 44 0.890542 CTTGCAAGCACACTAGGGCA 60.891 55.000 14.65 0.00 0.00 5.36
44 45 0.890542 TTGCAAGCACACTAGGGCAG 60.891 55.000 0.00 0.00 31.73 4.85
45 46 1.302832 GCAAGCACACTAGGGCAGT 60.303 57.895 0.00 0.00 38.32 4.40
46 47 0.890996 GCAAGCACACTAGGGCAGTT 60.891 55.000 0.00 0.00 34.26 3.16
47 48 0.877071 CAAGCACACTAGGGCAGTTG 59.123 55.000 0.00 0.00 34.26 3.16
48 49 0.890996 AAGCACACTAGGGCAGTTGC 60.891 55.000 0.00 0.00 39.53 4.17
60 61 0.109597 GCAGTTGCCATGTACACTGC 60.110 55.000 18.99 18.99 42.64 4.40
61 62 1.237533 CAGTTGCCATGTACACTGCA 58.762 50.000 15.16 15.16 0.00 4.41
62 63 1.608109 CAGTTGCCATGTACACTGCAA 59.392 47.619 23.00 23.00 41.08 4.08
63 64 2.034432 CAGTTGCCATGTACACTGCAAA 59.966 45.455 26.49 13.82 44.44 3.68
64 65 2.692557 AGTTGCCATGTACACTGCAAAA 59.307 40.909 26.49 10.76 44.44 2.44
65 66 2.791383 TGCCATGTACACTGCAAAAC 57.209 45.000 16.42 0.00 0.00 2.43
66 67 1.001924 TGCCATGTACACTGCAAAACG 60.002 47.619 16.42 0.00 0.00 3.60
67 68 1.685302 CCATGTACACTGCAAAACGC 58.315 50.000 0.00 0.00 42.89 4.84
76 77 4.341827 GCAAAACGCATGGCAACT 57.658 50.000 0.00 0.00 41.79 3.16
77 78 1.854664 GCAAAACGCATGGCAACTG 59.145 52.632 0.00 0.00 41.79 3.16
78 79 1.559149 GCAAAACGCATGGCAACTGG 61.559 55.000 0.00 0.00 41.79 4.00
79 80 1.300853 AAAACGCATGGCAACTGGC 60.301 52.632 0.00 0.00 43.74 4.85
86 87 2.913578 TGGCAACTGGCAGCTTGG 60.914 61.111 15.89 2.55 46.12 3.61
88 89 2.914097 GCAACTGGCAGCTTGGGT 60.914 61.111 15.89 0.00 43.97 4.51
89 90 3.045142 CAACTGGCAGCTTGGGTG 58.955 61.111 15.89 0.00 0.00 4.61
90 91 1.829533 CAACTGGCAGCTTGGGTGT 60.830 57.895 15.89 0.00 33.19 4.16
91 92 1.829533 AACTGGCAGCTTGGGTGTG 60.830 57.895 15.89 0.00 33.19 3.82
92 93 2.987547 CTGGCAGCTTGGGTGTGG 60.988 66.667 0.00 0.00 33.19 4.17
93 94 4.601794 TGGCAGCTTGGGTGTGGG 62.602 66.667 0.00 0.00 33.19 4.61
94 95 4.284550 GGCAGCTTGGGTGTGGGA 62.285 66.667 0.00 0.00 33.19 4.37
95 96 2.674380 GCAGCTTGGGTGTGGGAG 60.674 66.667 0.00 0.00 33.19 4.30
96 97 3.160585 CAGCTTGGGTGTGGGAGA 58.839 61.111 0.00 0.00 0.00 3.71
97 98 1.455849 CAGCTTGGGTGTGGGAGAA 59.544 57.895 0.00 0.00 0.00 2.87
98 99 0.607489 CAGCTTGGGTGTGGGAGAAG 60.607 60.000 0.00 0.00 0.00 2.85
99 100 0.768221 AGCTTGGGTGTGGGAGAAGA 60.768 55.000 0.00 0.00 0.00 2.87
100 101 0.322008 GCTTGGGTGTGGGAGAAGAG 60.322 60.000 0.00 0.00 0.00 2.85
101 102 1.352083 CTTGGGTGTGGGAGAAGAGA 58.648 55.000 0.00 0.00 0.00 3.10
102 103 1.002544 CTTGGGTGTGGGAGAAGAGAC 59.997 57.143 0.00 0.00 0.00 3.36
103 104 1.185618 TGGGTGTGGGAGAAGAGACG 61.186 60.000 0.00 0.00 0.00 4.18
104 105 1.592223 GGTGTGGGAGAAGAGACGG 59.408 63.158 0.00 0.00 0.00 4.79
105 106 1.592223 GTGTGGGAGAAGAGACGGG 59.408 63.158 0.00 0.00 0.00 5.28
106 107 1.155390 TGTGGGAGAAGAGACGGGT 59.845 57.895 0.00 0.00 0.00 5.28
107 108 1.185618 TGTGGGAGAAGAGACGGGTG 61.186 60.000 0.00 0.00 0.00 4.61
108 109 1.155390 TGGGAGAAGAGACGGGTGT 59.845 57.895 0.00 0.00 0.00 4.16
109 110 1.185618 TGGGAGAAGAGACGGGTGTG 61.186 60.000 0.00 0.00 0.00 3.82
110 111 1.186267 GGGAGAAGAGACGGGTGTGT 61.186 60.000 0.00 0.00 0.00 3.72
111 112 0.038159 GGAGAAGAGACGGGTGTGTG 60.038 60.000 0.00 0.00 0.00 3.82
112 113 0.038159 GAGAAGAGACGGGTGTGTGG 60.038 60.000 0.00 0.00 0.00 4.17
113 114 1.004918 GAAGAGACGGGTGTGTGGG 60.005 63.158 0.00 0.00 0.00 4.61
114 115 3.178540 AAGAGACGGGTGTGTGGGC 62.179 63.158 0.00 0.00 0.00 5.36
119 120 4.082523 CGGGTGTGTGGGCGAGAT 62.083 66.667 0.00 0.00 0.00 2.75
120 121 2.436646 GGGTGTGTGGGCGAGATG 60.437 66.667 0.00 0.00 0.00 2.90
121 122 2.436646 GGTGTGTGGGCGAGATGG 60.437 66.667 0.00 0.00 0.00 3.51
122 123 3.127533 GTGTGTGGGCGAGATGGC 61.128 66.667 0.00 0.00 43.88 4.40
138 139 3.136750 GCAAATGCCCACACACCA 58.863 55.556 0.00 0.00 34.31 4.17
139 140 1.005867 GCAAATGCCCACACACCAG 60.006 57.895 0.00 0.00 34.31 4.00
140 141 1.005867 CAAATGCCCACACACCAGC 60.006 57.895 0.00 0.00 0.00 4.85
141 142 2.209315 AAATGCCCACACACCAGCC 61.209 57.895 0.00 0.00 0.00 4.85
142 143 4.684134 ATGCCCACACACCAGCCC 62.684 66.667 0.00 0.00 0.00 5.19
144 145 4.603535 GCCCACACACCAGCCCTT 62.604 66.667 0.00 0.00 0.00 3.95
145 146 3.166434 CCCACACACCAGCCCTTA 58.834 61.111 0.00 0.00 0.00 2.69
146 147 1.691219 CCCACACACCAGCCCTTAT 59.309 57.895 0.00 0.00 0.00 1.73
147 148 0.916086 CCCACACACCAGCCCTTATA 59.084 55.000 0.00 0.00 0.00 0.98
148 149 1.408266 CCCACACACCAGCCCTTATAC 60.408 57.143 0.00 0.00 0.00 1.47
149 150 1.651987 CACACACCAGCCCTTATACG 58.348 55.000 0.00 0.00 0.00 3.06
150 151 1.066430 CACACACCAGCCCTTATACGT 60.066 52.381 0.00 0.00 0.00 3.57
151 152 1.066430 ACACACCAGCCCTTATACGTG 60.066 52.381 0.00 0.00 0.00 4.49
152 153 1.206132 CACACCAGCCCTTATACGTGA 59.794 52.381 0.00 0.00 0.00 4.35
153 154 1.480954 ACACCAGCCCTTATACGTGAG 59.519 52.381 0.00 0.00 0.00 3.51
168 169 3.531538 ACGTGAGTGAAAACTGATGTGT 58.468 40.909 0.00 0.00 46.97 3.72
169 170 3.309682 ACGTGAGTGAAAACTGATGTGTG 59.690 43.478 0.00 0.00 46.97 3.82
170 171 3.303329 CGTGAGTGAAAACTGATGTGTGG 60.303 47.826 0.00 0.00 0.00 4.17
171 172 3.003689 GTGAGTGAAAACTGATGTGTGGG 59.996 47.826 0.00 0.00 0.00 4.61
172 173 1.956477 AGTGAAAACTGATGTGTGGGC 59.044 47.619 0.00 0.00 0.00 5.36
173 174 0.950836 TGAAAACTGATGTGTGGGCG 59.049 50.000 0.00 0.00 0.00 6.13
174 175 1.234821 GAAAACTGATGTGTGGGCGA 58.765 50.000 0.00 0.00 0.00 5.54
175 176 1.606668 GAAAACTGATGTGTGGGCGAA 59.393 47.619 0.00 0.00 0.00 4.70
176 177 0.951558 AAACTGATGTGTGGGCGAAC 59.048 50.000 0.00 0.00 0.00 3.95
177 178 0.108585 AACTGATGTGTGGGCGAACT 59.891 50.000 0.00 0.00 0.00 3.01
178 179 0.603707 ACTGATGTGTGGGCGAACTG 60.604 55.000 0.00 0.00 0.00 3.16
179 180 1.915614 CTGATGTGTGGGCGAACTGC 61.916 60.000 0.00 0.00 45.38 4.40
180 181 1.672356 GATGTGTGGGCGAACTGCT 60.672 57.895 0.00 0.00 45.43 4.24
181 182 0.391130 GATGTGTGGGCGAACTGCTA 60.391 55.000 0.00 0.00 45.43 3.49
182 183 0.036164 ATGTGTGGGCGAACTGCTAA 59.964 50.000 0.00 0.00 45.43 3.09
183 184 0.179043 TGTGTGGGCGAACTGCTAAA 60.179 50.000 0.00 0.00 45.43 1.85
184 185 0.237498 GTGTGGGCGAACTGCTAAAC 59.763 55.000 0.00 0.00 45.43 2.01
185 186 1.225376 TGTGGGCGAACTGCTAAACG 61.225 55.000 0.00 0.00 45.43 3.60
188 189 2.479198 GCGAACTGCTAAACGCCC 59.521 61.111 0.00 0.00 44.27 6.13
189 190 2.322081 GCGAACTGCTAAACGCCCA 61.322 57.895 0.00 0.00 44.27 5.36
190 191 1.495951 CGAACTGCTAAACGCCCAC 59.504 57.895 0.00 0.00 38.05 4.61
191 192 1.225376 CGAACTGCTAAACGCCCACA 61.225 55.000 0.00 0.00 38.05 4.17
192 193 0.237498 GAACTGCTAAACGCCCACAC 59.763 55.000 0.00 0.00 38.05 3.82
193 194 0.464735 AACTGCTAAACGCCCACACA 60.465 50.000 0.00 0.00 38.05 3.72
194 195 1.164041 ACTGCTAAACGCCCACACAC 61.164 55.000 0.00 0.00 38.05 3.82
195 196 1.153147 TGCTAAACGCCCACACACA 60.153 52.632 0.00 0.00 38.05 3.72
196 197 1.163420 TGCTAAACGCCCACACACAG 61.163 55.000 0.00 0.00 38.05 3.66
197 198 1.852067 GCTAAACGCCCACACACAGG 61.852 60.000 0.00 0.00 0.00 4.00
198 199 1.852067 CTAAACGCCCACACACAGGC 61.852 60.000 0.00 0.00 46.17 4.85
203 204 4.351054 CCCACACACAGGCCCCTC 62.351 72.222 0.00 0.00 0.00 4.30
204 205 4.351054 CCACACACAGGCCCCTCC 62.351 72.222 0.00 0.00 0.00 4.30
205 206 4.704833 CACACACAGGCCCCTCCG 62.705 72.222 0.00 0.00 40.77 4.63
215 216 4.323477 CCCCTCCGCGTGGTGAAA 62.323 66.667 18.30 0.00 36.30 2.69
216 217 3.047877 CCCTCCGCGTGGTGAAAC 61.048 66.667 18.30 0.00 36.30 2.78
217 218 3.411351 CCTCCGCGTGGTGAAACG 61.411 66.667 18.30 0.00 46.30 3.60
218 219 3.411351 CTCCGCGTGGTGAAACGG 61.411 66.667 16.01 0.58 46.97 4.44
221 222 4.054455 CGCGTGGTGAAACGGACG 62.054 66.667 0.00 0.00 43.63 4.79
222 223 2.963320 GCGTGGTGAAACGGACGT 60.963 61.111 0.00 0.00 42.99 4.34
223 224 2.925352 CGTGGTGAAACGGACGTG 59.075 61.111 0.00 0.00 38.22 4.49
224 225 1.879430 CGTGGTGAAACGGACGTGT 60.879 57.895 0.00 0.00 38.22 4.49
225 226 1.639534 GTGGTGAAACGGACGTGTG 59.360 57.895 0.00 0.00 38.12 3.82
226 227 1.521906 TGGTGAAACGGACGTGTGG 60.522 57.895 0.00 0.00 38.12 4.17
227 228 2.248835 GGTGAAACGGACGTGTGGG 61.249 63.158 0.00 0.00 38.12 4.61
228 229 2.589442 TGAAACGGACGTGTGGGC 60.589 61.111 0.00 0.00 0.00 5.36
229 230 3.708734 GAAACGGACGTGTGGGCG 61.709 66.667 0.00 0.00 37.94 6.13
230 231 4.224274 AAACGGACGTGTGGGCGA 62.224 61.111 0.00 0.00 35.59 5.54
231 232 4.955774 AACGGACGTGTGGGCGAC 62.956 66.667 0.00 0.00 35.59 5.19
251 252 3.284449 GGTGAACGCCCACACACC 61.284 66.667 9.52 0.00 44.23 4.16
252 253 2.515057 GTGAACGCCCACACACCA 60.515 61.111 3.27 0.00 37.04 4.17
253 254 2.203139 TGAACGCCCACACACCAG 60.203 61.111 0.00 0.00 0.00 4.00
254 255 3.660111 GAACGCCCACACACCAGC 61.660 66.667 0.00 0.00 0.00 4.85
257 258 4.015406 CGCCCACACACCAGCCTA 62.015 66.667 0.00 0.00 0.00 3.93
258 259 2.045926 GCCCACACACCAGCCTAG 60.046 66.667 0.00 0.00 0.00 3.02
259 260 2.895424 GCCCACACACCAGCCTAGT 61.895 63.158 0.00 0.00 0.00 2.57
260 261 1.296715 CCCACACACCAGCCTAGTC 59.703 63.158 0.00 0.00 0.00 2.59
261 262 1.296715 CCACACACCAGCCTAGTCC 59.703 63.158 0.00 0.00 0.00 3.85
262 263 1.194781 CCACACACCAGCCTAGTCCT 61.195 60.000 0.00 0.00 0.00 3.85
263 264 1.557099 CACACACCAGCCTAGTCCTA 58.443 55.000 0.00 0.00 0.00 2.94
264 265 2.111384 CACACACCAGCCTAGTCCTAT 58.889 52.381 0.00 0.00 0.00 2.57
265 266 2.111384 ACACACCAGCCTAGTCCTATG 58.889 52.381 0.00 0.00 0.00 2.23
266 267 2.111384 CACACCAGCCTAGTCCTATGT 58.889 52.381 0.00 0.00 0.00 2.29
267 268 2.111384 ACACCAGCCTAGTCCTATGTG 58.889 52.381 0.00 0.00 0.00 3.21
268 269 1.414181 CACCAGCCTAGTCCTATGTGG 59.586 57.143 0.00 0.00 37.10 4.17
269 270 0.394565 CCAGCCTAGTCCTATGTGGC 59.605 60.000 0.00 0.00 43.52 5.01
270 271 1.123077 CAGCCTAGTCCTATGTGGCA 58.877 55.000 0.00 0.00 45.42 4.92
271 272 1.123928 AGCCTAGTCCTATGTGGCAC 58.876 55.000 11.55 11.55 45.42 5.01
272 273 0.106894 GCCTAGTCCTATGTGGCACC 59.893 60.000 16.26 0.00 42.79 5.01
273 274 1.496060 CCTAGTCCTATGTGGCACCA 58.504 55.000 16.26 3.56 35.26 4.17
274 275 1.139058 CCTAGTCCTATGTGGCACCAC 59.861 57.143 16.26 13.03 46.33 4.16
282 283 4.341827 GTGGCACCACAAACATGC 57.658 55.556 14.97 0.00 45.53 4.06
286 287 2.903284 GCACCACAAACATGCCAAG 58.097 52.632 0.00 0.00 33.06 3.61
287 288 0.388659 GCACCACAAACATGCCAAGA 59.611 50.000 0.00 0.00 33.06 3.02
288 289 1.001181 GCACCACAAACATGCCAAGAT 59.999 47.619 0.00 0.00 33.06 2.40
289 290 2.548493 GCACCACAAACATGCCAAGATT 60.548 45.455 0.00 0.00 33.06 2.40
290 291 3.319755 CACCACAAACATGCCAAGATTC 58.680 45.455 0.00 0.00 0.00 2.52
291 292 2.030007 ACCACAAACATGCCAAGATTCG 60.030 45.455 0.00 0.00 0.00 3.34
292 293 2.030007 CCACAAACATGCCAAGATTCGT 60.030 45.455 0.00 0.00 0.00 3.85
293 294 2.981805 CACAAACATGCCAAGATTCGTG 59.018 45.455 0.00 0.00 0.00 4.35
294 295 1.987770 CAAACATGCCAAGATTCGTGC 59.012 47.619 0.00 0.00 0.00 5.34
295 296 1.246649 AACATGCCAAGATTCGTGCA 58.753 45.000 0.00 0.00 38.23 4.57
296 297 0.523072 ACATGCCAAGATTCGTGCAC 59.477 50.000 6.82 6.82 36.41 4.57
297 298 0.179156 CATGCCAAGATTCGTGCACC 60.179 55.000 12.15 0.00 36.41 5.01
298 299 1.315257 ATGCCAAGATTCGTGCACCC 61.315 55.000 12.15 0.00 36.41 4.61
299 300 1.971167 GCCAAGATTCGTGCACCCA 60.971 57.895 12.15 0.00 0.00 4.51
300 301 1.875963 CCAAGATTCGTGCACCCAC 59.124 57.895 12.15 0.49 38.62 4.61
301 302 0.888736 CCAAGATTCGTGCACCCACA 60.889 55.000 12.15 0.00 42.17 4.17
302 303 0.950836 CAAGATTCGTGCACCCACAA 59.049 50.000 12.15 0.00 42.17 3.33
303 304 1.336440 CAAGATTCGTGCACCCACAAA 59.664 47.619 12.15 0.00 42.17 2.83
304 305 0.951558 AGATTCGTGCACCCACAAAC 59.048 50.000 12.15 0.00 42.17 2.93
305 306 0.385473 GATTCGTGCACCCACAAACG 60.385 55.000 12.15 0.00 42.17 3.60
306 307 1.791103 ATTCGTGCACCCACAAACGG 61.791 55.000 12.15 0.00 42.17 4.44
307 308 2.871216 TTCGTGCACCCACAAACGGA 62.871 55.000 12.15 0.00 42.17 4.69
308 309 2.719354 GTGCACCCACAAACGGAC 59.281 61.111 5.22 0.00 41.67 4.79
309 310 2.897846 TGCACCCACAAACGGACG 60.898 61.111 0.00 0.00 0.00 4.79
310 311 4.322385 GCACCCACAAACGGACGC 62.322 66.667 0.00 0.00 0.00 5.19
311 312 4.007940 CACCCACAAACGGACGCG 62.008 66.667 3.53 3.53 0.00 6.01
313 314 4.973055 CCCACAAACGGACGCGGA 62.973 66.667 12.47 0.00 0.00 5.54
314 315 2.740826 CCACAAACGGACGCGGAT 60.741 61.111 12.47 0.00 0.00 4.18
315 316 2.736682 CCACAAACGGACGCGGATC 61.737 63.158 12.47 0.00 0.00 3.36
316 317 2.433664 ACAAACGGACGCGGATCC 60.434 61.111 12.47 8.60 35.16 3.36
317 318 2.433491 CAAACGGACGCGGATCCA 60.433 61.111 12.47 0.00 38.87 3.41
318 319 2.433664 AAACGGACGCGGATCCAC 60.434 61.111 12.47 0.00 38.87 4.02
319 320 4.789075 AACGGACGCGGATCCACG 62.789 66.667 20.32 20.32 38.87 4.94
344 345 3.430862 GCGAGATGCAAACGCCCA 61.431 61.111 19.47 0.00 45.35 5.36
345 346 2.480555 CGAGATGCAAACGCCCAC 59.519 61.111 0.00 0.00 0.00 4.61
346 347 2.324330 CGAGATGCAAACGCCCACA 61.324 57.895 0.00 0.00 0.00 4.17
347 348 1.210155 GAGATGCAAACGCCCACAC 59.790 57.895 0.00 0.00 0.00 3.82
348 349 2.126888 GATGCAAACGCCCACACG 60.127 61.111 0.00 0.00 39.50 4.49
359 360 4.915298 CCACACGTATGGGCGTTA 57.085 55.556 4.49 0.00 43.83 3.18
360 361 2.673074 CCACACGTATGGGCGTTAG 58.327 57.895 4.49 0.00 43.83 2.34
361 362 0.108520 CCACACGTATGGGCGTTAGT 60.109 55.000 4.49 0.00 43.83 2.24
362 363 0.996462 CACACGTATGGGCGTTAGTG 59.004 55.000 0.00 0.00 43.83 2.74
363 364 0.604578 ACACGTATGGGCGTTAGTGT 59.395 50.000 0.00 0.00 43.83 3.55
364 365 1.001181 ACACGTATGGGCGTTAGTGTT 59.999 47.619 0.00 0.00 43.83 3.32
365 366 2.070783 CACGTATGGGCGTTAGTGTTT 58.929 47.619 0.00 0.00 43.83 2.83
366 367 2.093152 CACGTATGGGCGTTAGTGTTTC 59.907 50.000 0.00 0.00 43.83 2.78
367 368 1.662122 CGTATGGGCGTTAGTGTTTCC 59.338 52.381 0.00 0.00 0.00 3.13
368 369 1.662122 GTATGGGCGTTAGTGTTTCCG 59.338 52.381 0.00 0.00 0.00 4.30
369 370 0.035739 ATGGGCGTTAGTGTTTCCGT 59.964 50.000 0.00 0.00 0.00 4.69
370 371 0.678395 TGGGCGTTAGTGTTTCCGTA 59.322 50.000 0.00 0.00 0.00 4.02
371 372 1.337074 TGGGCGTTAGTGTTTCCGTAG 60.337 52.381 0.00 0.00 0.00 3.51
372 373 1.337167 GGGCGTTAGTGTTTCCGTAGT 60.337 52.381 0.00 0.00 0.00 2.73
373 374 2.407090 GGCGTTAGTGTTTCCGTAGTT 58.593 47.619 0.00 0.00 0.00 2.24
374 375 3.574614 GGCGTTAGTGTTTCCGTAGTTA 58.425 45.455 0.00 0.00 0.00 2.24
375 376 4.176271 GGCGTTAGTGTTTCCGTAGTTAT 58.824 43.478 0.00 0.00 0.00 1.89
376 377 5.339990 GGCGTTAGTGTTTCCGTAGTTATA 58.660 41.667 0.00 0.00 0.00 0.98
377 378 5.979517 GGCGTTAGTGTTTCCGTAGTTATAT 59.020 40.000 0.00 0.00 0.00 0.86
378 379 6.142958 GGCGTTAGTGTTTCCGTAGTTATATC 59.857 42.308 0.00 0.00 0.00 1.63
379 380 6.142958 GCGTTAGTGTTTCCGTAGTTATATCC 59.857 42.308 0.00 0.00 0.00 2.59
380 381 6.638468 CGTTAGTGTTTCCGTAGTTATATCCC 59.362 42.308 0.00 0.00 0.00 3.85
381 382 7.469181 CGTTAGTGTTTCCGTAGTTATATCCCT 60.469 40.741 0.00 0.00 0.00 4.20
382 383 6.803366 AGTGTTTCCGTAGTTATATCCCTT 57.197 37.500 0.00 0.00 0.00 3.95
383 384 7.191593 AGTGTTTCCGTAGTTATATCCCTTT 57.808 36.000 0.00 0.00 0.00 3.11
384 385 7.046033 AGTGTTTCCGTAGTTATATCCCTTTG 58.954 38.462 0.00 0.00 0.00 2.77
385 386 7.043565 GTGTTTCCGTAGTTATATCCCTTTGA 58.956 38.462 0.00 0.00 0.00 2.69
386 387 7.550196 GTGTTTCCGTAGTTATATCCCTTTGAA 59.450 37.037 0.00 0.00 0.00 2.69
387 388 7.550196 TGTTTCCGTAGTTATATCCCTTTGAAC 59.450 37.037 0.00 0.00 0.00 3.18
388 389 6.165700 TCCGTAGTTATATCCCTTTGAACC 57.834 41.667 0.00 0.00 0.00 3.62
389 390 5.901276 TCCGTAGTTATATCCCTTTGAACCT 59.099 40.000 0.00 0.00 0.00 3.50
390 391 6.384886 TCCGTAGTTATATCCCTTTGAACCTT 59.615 38.462 0.00 0.00 0.00 3.50
391 392 6.482308 CCGTAGTTATATCCCTTTGAACCTTG 59.518 42.308 0.00 0.00 0.00 3.61
392 393 7.046033 CGTAGTTATATCCCTTTGAACCTTGT 58.954 38.462 0.00 0.00 0.00 3.16
393 394 7.224167 CGTAGTTATATCCCTTTGAACCTTGTC 59.776 40.741 0.00 0.00 0.00 3.18
394 395 7.027874 AGTTATATCCCTTTGAACCTTGTCA 57.972 36.000 0.00 0.00 0.00 3.58
395 396 6.884836 AGTTATATCCCTTTGAACCTTGTCAC 59.115 38.462 0.00 0.00 0.00 3.67
396 397 3.884037 ATCCCTTTGAACCTTGTCACT 57.116 42.857 0.00 0.00 0.00 3.41
397 398 4.993705 ATCCCTTTGAACCTTGTCACTA 57.006 40.909 0.00 0.00 0.00 2.74
398 399 4.781775 TCCCTTTGAACCTTGTCACTAA 57.218 40.909 0.00 0.00 0.00 2.24
399 400 5.319043 TCCCTTTGAACCTTGTCACTAAT 57.681 39.130 0.00 0.00 0.00 1.73
400 401 5.313712 TCCCTTTGAACCTTGTCACTAATC 58.686 41.667 0.00 0.00 0.00 1.75
401 402 5.070001 CCCTTTGAACCTTGTCACTAATCA 58.930 41.667 0.00 0.00 0.00 2.57
402 403 5.534654 CCCTTTGAACCTTGTCACTAATCAA 59.465 40.000 0.00 0.00 0.00 2.57
403 404 6.209391 CCCTTTGAACCTTGTCACTAATCAAT 59.791 38.462 0.00 0.00 0.00 2.57
404 405 7.393234 CCCTTTGAACCTTGTCACTAATCAATA 59.607 37.037 0.00 0.00 0.00 1.90
405 406 8.792633 CCTTTGAACCTTGTCACTAATCAATAA 58.207 33.333 0.00 0.00 0.00 1.40
408 409 7.816640 TGAACCTTGTCACTAATCAATAAAGC 58.183 34.615 0.00 0.00 0.00 3.51
409 410 6.422776 ACCTTGTCACTAATCAATAAAGCG 57.577 37.500 0.00 0.00 0.00 4.68
410 411 6.170506 ACCTTGTCACTAATCAATAAAGCGA 58.829 36.000 0.00 0.00 0.00 4.93
411 412 6.313905 ACCTTGTCACTAATCAATAAAGCGAG 59.686 38.462 0.00 0.00 0.00 5.03
412 413 6.313905 CCTTGTCACTAATCAATAAAGCGAGT 59.686 38.462 0.00 0.00 0.00 4.18
413 414 6.647212 TGTCACTAATCAATAAAGCGAGTG 57.353 37.500 0.00 0.00 35.30 3.51
414 415 6.163476 TGTCACTAATCAATAAAGCGAGTGT 58.837 36.000 0.00 0.00 35.46 3.55
415 416 6.090763 TGTCACTAATCAATAAAGCGAGTGTG 59.909 38.462 0.00 0.00 35.46 3.82
416 417 6.090898 GTCACTAATCAATAAAGCGAGTGTGT 59.909 38.462 0.00 0.00 35.46 3.72
417 418 6.649141 TCACTAATCAATAAAGCGAGTGTGTT 59.351 34.615 0.00 0.00 35.46 3.32
418 419 7.172532 TCACTAATCAATAAAGCGAGTGTGTTT 59.827 33.333 0.00 0.00 35.46 2.83
419 420 7.803189 CACTAATCAATAAAGCGAGTGTGTTTT 59.197 33.333 0.00 0.00 0.00 2.43
420 421 8.349983 ACTAATCAATAAAGCGAGTGTGTTTTT 58.650 29.630 0.00 0.00 0.00 1.94
447 448 6.685527 CCTAAAAGAAAGGTTAGGCAGATC 57.314 41.667 0.00 0.00 39.88 2.75
448 449 5.590663 CCTAAAAGAAAGGTTAGGCAGATCC 59.409 44.000 0.00 0.00 39.88 3.36
451 452 2.507471 AGAAAGGTTAGGCAGATCCCAG 59.493 50.000 0.00 0.00 34.51 4.45
460 461 1.273327 GGCAGATCCCAGTTTTGTTGG 59.727 52.381 0.00 0.00 35.41 3.77
474 476 0.037590 TGTTGGGATTTCAGGGTCCG 59.962 55.000 0.00 0.00 35.28 4.79
511 513 3.332034 ACTAATCCAACCGTTAGTGTGC 58.668 45.455 0.00 0.00 39.11 4.57
512 514 1.153353 AATCCAACCGTTAGTGTGCG 58.847 50.000 0.00 0.00 0.00 5.34
514 516 0.319211 TCCAACCGTTAGTGTGCGAG 60.319 55.000 0.00 0.00 0.00 5.03
515 517 0.319211 CCAACCGTTAGTGTGCGAGA 60.319 55.000 0.00 0.00 0.00 4.04
528 535 4.238385 CGAGAAGCAACGGTTCGA 57.762 55.556 0.00 0.00 43.68 3.71
535 542 2.386661 AGCAACGGTTCGATCAGATT 57.613 45.000 0.46 0.00 0.00 2.40
565 572 2.928731 GCTGCAACTAGAGGACAGACAC 60.929 54.545 0.00 0.00 0.00 3.67
566 573 1.269723 TGCAACTAGAGGACAGACACG 59.730 52.381 0.00 0.00 0.00 4.49
583 590 2.401766 CGCAACATGCTGGACCTCC 61.402 63.158 0.00 0.00 42.25 4.30
602 625 0.516322 CAGACATTAACGCGTGCACG 60.516 55.000 34.01 34.01 43.27 5.34
638 664 1.587054 CACGACTGGACCTCAGACC 59.413 63.158 0.00 0.00 46.18 3.85
710 747 1.325355 GCTGATATTGTGGCTGCCAT 58.675 50.000 26.22 11.83 35.28 4.40
777 838 1.444383 GCTGAGCGATGACGTCACA 60.444 57.895 22.71 12.93 41.98 3.58
792 853 5.134202 ACGTCACAGTGTTATTCAGATGA 57.866 39.130 0.00 0.00 0.00 2.92
796 857 5.877012 GTCACAGTGTTATTCAGATGACCAT 59.123 40.000 0.00 0.00 32.12 3.55
799 860 5.188434 CAGTGTTATTCAGATGACCATGGT 58.812 41.667 19.89 19.89 0.00 3.55
805 866 7.121168 TGTTATTCAGATGACCATGGTTTTCTC 59.879 37.037 20.85 13.03 0.00 2.87
840 901 2.298163 AGAGACCGCTCCTCGTTAAAAA 59.702 45.455 0.00 0.00 42.30 1.94
863 2596 3.305403 CCCCGAAGAAAAAGAGAAAAGGC 60.305 47.826 0.00 0.00 0.00 4.35
924 2657 0.521242 GCAAGCAAATCGTACGCCAG 60.521 55.000 11.24 1.38 0.00 4.85
1233 3262 3.244700 CCAAGAGTGAGTCCCAAATCTGT 60.245 47.826 0.00 0.00 0.00 3.41
1237 3266 1.351017 GTGAGTCCCAAATCTGTCCCA 59.649 52.381 0.00 0.00 0.00 4.37
1368 3401 0.549902 TGGGGAAGATGGGCAAGAGA 60.550 55.000 0.00 0.00 0.00 3.10
1525 3559 1.238439 TGCTTTTGGACTGCACTAGC 58.762 50.000 0.00 0.00 42.57 3.42
1613 3647 4.141251 GGTGGGATTGTTGGACCAGTATAT 60.141 45.833 0.00 0.00 32.84 0.86
1677 3712 3.120199 CCACTGGATTTCGTTAGTGCTTG 60.120 47.826 0.00 0.00 39.27 4.01
1738 3773 2.676463 GCTGCTCTTCAGTTGGGAGTAG 60.676 54.545 12.59 12.59 44.66 2.57
1805 3849 7.358066 GTGATAGAATATGATTTGTGCTGTGG 58.642 38.462 0.00 0.00 0.00 4.17
1918 3962 8.466798 AGTGAATATTAGGTAAATTGTGCCAAC 58.533 33.333 0.00 0.00 33.55 3.77
2070 4141 0.788391 GCATGCTTGCTTTGTTGAGC 59.212 50.000 16.80 0.00 45.77 4.26
2085 4156 4.686972 TGTTGAGCAGACTATCATAGTGC 58.313 43.478 0.70 0.23 39.59 4.40
2414 4485 3.580895 TCTGTAGTGATAACCCACTTGCA 59.419 43.478 1.71 0.00 44.32 4.08
2478 4549 8.840321 AGGTACTTCATGTTATTCACATATTGC 58.160 33.333 0.00 0.00 39.32 3.56
2486 4557 8.849168 CATGTTATTCACATATTGCCTAGGAAA 58.151 33.333 14.75 9.43 45.06 3.13
2582 4655 9.857656 TTAATTTCATCTAAATCAGGAGCTCAT 57.142 29.630 17.19 5.25 36.76 2.90
2618 4691 6.995686 TGAAAGAAAACATGCTAACTACTCCA 59.004 34.615 0.00 0.00 0.00 3.86
2627 4700 3.767673 TGCTAACTACTCCATCCGTTTCT 59.232 43.478 0.00 0.00 0.00 2.52
2636 4709 9.584008 ACTACTCCATCCGTTTCTAAATATAGA 57.416 33.333 0.00 0.00 36.36 1.98
2637 4710 9.843334 CTACTCCATCCGTTTCTAAATATAGAC 57.157 37.037 0.00 0.00 37.88 2.59
2660 4836 6.784031 ACTTATATTTAGGAATGCAGGGAGG 58.216 40.000 0.00 0.00 0.00 4.30
2661 4837 4.664688 ATATTTAGGAATGCAGGGAGGG 57.335 45.455 0.00 0.00 0.00 4.30
2712 4895 9.814507 TTATTATTGTCATGTAACGTGTTGAAC 57.185 29.630 0.00 0.00 0.00 3.18
2742 4925 5.677091 GCTGATGCATCGTTTAATCTGGTTT 60.677 40.000 21.34 0.00 39.41 3.27
2844 5040 6.860023 GCAATGACATTTGCTGATATTAGTCC 59.140 38.462 0.00 0.00 46.66 3.85
2847 5043 6.811954 TGACATTTGCTGATATTAGTCCGTA 58.188 36.000 0.00 0.00 0.00 4.02
2857 5053 7.254795 GCTGATATTAGTCCGTAACTTGCAAAT 60.255 37.037 0.00 0.00 39.55 2.32
2861 5057 4.223320 AGTCCGTAACTTGCAAATGTTG 57.777 40.909 12.87 0.00 33.03 3.33
3173 5381 5.525745 CAGTTGTGGTATACTTTGTGTGTCA 59.474 40.000 2.25 0.00 0.00 3.58
3222 5430 3.889196 TTGATAGGTGTTGTCGTTTGC 57.111 42.857 0.00 0.00 0.00 3.68
3246 5454 3.787826 CGATTCGTGTCACTTTGAACTG 58.212 45.455 0.65 0.00 0.00 3.16
3258 5466 5.126384 TCACTTTGAACTGGGTTTTTCGATT 59.874 36.000 0.00 0.00 0.00 3.34
3302 5510 5.034152 GTCATGTTCGTTCAATGTGTTGTT 58.966 37.500 0.00 0.00 36.69 2.83
3398 5614 1.209019 AGTAGGCTGATTGCAGGTGAG 59.791 52.381 0.00 0.00 45.15 3.51
3465 5686 0.109179 GATTGGCGACATTTGCTGCA 60.109 50.000 0.00 0.00 42.32 4.41
3471 5692 1.000233 CGACATTTGCTGCAGTGCAC 61.000 55.000 15.37 9.40 43.20 4.57
3485 5706 2.079158 AGTGCACATCATCTTGAACCG 58.921 47.619 21.04 0.00 0.00 4.44
3502 5723 1.874019 CGCTCGTTCGATCTGTGGG 60.874 63.158 0.00 0.00 0.00 4.61
3515 5736 4.020751 CGATCTGTGGGTTCATATCCATCT 60.021 45.833 0.00 0.00 35.28 2.90
3705 5936 1.893137 AGAGACGTGCCTTGTGTATCA 59.107 47.619 0.00 0.00 0.00 2.15
3754 6094 5.839517 AAATAGAGGGAGATCATTCCAGG 57.160 43.478 3.60 0.00 39.09 4.45
3782 6122 7.095017 ACCGTTGATTGTTTTTGTTTGACAAAT 60.095 29.630 3.49 0.00 46.17 2.32
3784 6124 9.746711 CGTTGATTGTTTTTGTTTGACAAATTA 57.253 25.926 3.49 0.00 46.17 1.40
3820 6160 2.350522 GGTCATTGTAGTCCTGCACTG 58.649 52.381 0.00 0.00 36.43 3.66
3839 6179 0.391130 GTTCATGCTGCTACCGGTGA 60.391 55.000 19.93 0.00 0.00 4.02
3840 6180 0.323302 TTCATGCTGCTACCGGTGAA 59.677 50.000 19.93 6.56 0.00 3.18
3842 6182 0.447801 CATGCTGCTACCGGTGAAAC 59.552 55.000 19.93 4.04 0.00 2.78
3849 6189 1.343506 CTACCGGTGAAACACGTAGC 58.656 55.000 19.93 0.00 39.98 3.58
3886 6226 0.250513 GTCTTGACAGGTAGGCCCAG 59.749 60.000 0.00 0.00 34.66 4.45
3954 6342 1.668101 AAGGATCGCAGACTCGGACC 61.668 60.000 0.00 0.00 42.51 4.46
3980 6368 3.537206 AAGAAGCAACCTCCGCGCT 62.537 57.895 5.56 0.00 37.68 5.92
4017 6405 3.198409 TCGAATCATCCTTCACATGGG 57.802 47.619 0.00 0.00 0.00 4.00
4068 7667 6.500589 TCAAGAGGGGTAATATTTGGAGAG 57.499 41.667 0.00 0.00 0.00 3.20
4077 7676 6.289064 GGTAATATTTGGAGAGTGGGTACAG 58.711 44.000 0.00 0.00 0.00 2.74
4105 7704 8.607441 TCTCAAATAAATATCTGGAATGACCG 57.393 34.615 0.00 0.00 42.61 4.79
4109 7708 7.928307 AATAAATATCTGGAATGACCGATGG 57.072 36.000 0.00 0.00 42.61 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.345414 CAGATGGCAGCTCTCTCTTTTT 58.655 45.455 0.27 0.00 0.00 1.94
3 4 2.940527 GCAGATGGCAGCTCTCTCTTTT 60.941 50.000 0.27 0.00 43.97 2.27
4 5 1.407162 GCAGATGGCAGCTCTCTCTTT 60.407 52.381 0.27 0.00 43.97 2.52
5 6 0.178533 GCAGATGGCAGCTCTCTCTT 59.821 55.000 0.27 0.00 43.97 2.85
6 7 1.824658 GCAGATGGCAGCTCTCTCT 59.175 57.895 0.27 0.00 43.97 3.10
7 8 4.442018 GCAGATGGCAGCTCTCTC 57.558 61.111 0.27 0.00 43.97 3.20
24 25 0.890542 TGCCCTAGTGTGCTTGCAAG 60.891 55.000 22.44 22.44 0.00 4.01
25 26 0.890542 CTGCCCTAGTGTGCTTGCAA 60.891 55.000 0.00 0.00 0.00 4.08
26 27 1.302752 CTGCCCTAGTGTGCTTGCA 60.303 57.895 0.00 0.00 0.00 4.08
27 28 0.890996 AACTGCCCTAGTGTGCTTGC 60.891 55.000 0.00 0.00 40.26 4.01
28 29 0.877071 CAACTGCCCTAGTGTGCTTG 59.123 55.000 0.00 0.00 40.26 4.01
29 30 0.890996 GCAACTGCCCTAGTGTGCTT 60.891 55.000 0.00 0.00 40.26 3.91
30 31 1.302832 GCAACTGCCCTAGTGTGCT 60.303 57.895 0.00 0.00 40.26 4.40
31 32 3.267974 GCAACTGCCCTAGTGTGC 58.732 61.111 0.00 0.00 40.26 4.57
41 42 0.109597 GCAGTGTACATGGCAACTGC 60.110 55.000 24.01 24.01 42.64 4.40
42 43 1.237533 TGCAGTGTACATGGCAACTG 58.762 50.000 18.49 15.65 32.54 3.16
43 44 1.979855 TTGCAGTGTACATGGCAACT 58.020 45.000 24.54 4.62 40.94 3.16
44 45 2.791383 TTTGCAGTGTACATGGCAAC 57.209 45.000 26.78 4.07 44.99 4.17
45 46 2.542618 CGTTTTGCAGTGTACATGGCAA 60.543 45.455 24.54 24.54 43.79 4.52
46 47 1.001924 CGTTTTGCAGTGTACATGGCA 60.002 47.619 17.30 17.30 0.00 4.92
47 48 1.685302 CGTTTTGCAGTGTACATGGC 58.315 50.000 13.09 13.09 0.00 4.40
48 49 1.685302 GCGTTTTGCAGTGTACATGG 58.315 50.000 0.00 0.00 45.45 3.66
59 60 1.559149 CCAGTTGCCATGCGTTTTGC 61.559 55.000 0.00 0.00 46.70 3.68
60 61 1.559149 GCCAGTTGCCATGCGTTTTG 61.559 55.000 0.00 0.00 0.00 2.44
61 62 1.300853 GCCAGTTGCCATGCGTTTT 60.301 52.632 0.00 0.00 0.00 2.43
62 63 2.339712 GCCAGTTGCCATGCGTTT 59.660 55.556 0.00 0.00 0.00 3.60
63 64 2.911509 TGCCAGTTGCCATGCGTT 60.912 55.556 0.00 0.00 40.16 4.84
64 65 3.367743 CTGCCAGTTGCCATGCGT 61.368 61.111 0.00 0.00 40.16 5.24
65 66 4.789075 GCTGCCAGTTGCCATGCG 62.789 66.667 0.00 0.00 40.16 4.73
66 67 2.939261 AAGCTGCCAGTTGCCATGC 61.939 57.895 0.00 0.00 40.16 4.06
67 68 1.080093 CAAGCTGCCAGTTGCCATG 60.080 57.895 0.00 0.00 40.16 3.66
68 69 2.280552 CCAAGCTGCCAGTTGCCAT 61.281 57.895 0.00 0.00 40.16 4.40
69 70 2.913578 CCAAGCTGCCAGTTGCCA 60.914 61.111 0.00 0.00 40.16 4.92
70 71 3.688159 CCCAAGCTGCCAGTTGCC 61.688 66.667 0.00 0.00 40.16 4.52
71 72 2.914097 ACCCAAGCTGCCAGTTGC 60.914 61.111 0.00 0.00 41.77 4.17
72 73 1.829533 ACACCCAAGCTGCCAGTTG 60.830 57.895 0.00 0.00 0.00 3.16
73 74 1.829533 CACACCCAAGCTGCCAGTT 60.830 57.895 0.00 0.00 0.00 3.16
74 75 2.203394 CACACCCAAGCTGCCAGT 60.203 61.111 0.00 0.00 0.00 4.00
75 76 2.987547 CCACACCCAAGCTGCCAG 60.988 66.667 0.00 0.00 0.00 4.85
76 77 4.601794 CCCACACCCAAGCTGCCA 62.602 66.667 0.00 0.00 0.00 4.92
77 78 4.284550 TCCCACACCCAAGCTGCC 62.285 66.667 0.00 0.00 0.00 4.85
78 79 2.674380 CTCCCACACCCAAGCTGC 60.674 66.667 0.00 0.00 0.00 5.25
79 80 0.607489 CTTCTCCCACACCCAAGCTG 60.607 60.000 0.00 0.00 0.00 4.24
80 81 0.768221 TCTTCTCCCACACCCAAGCT 60.768 55.000 0.00 0.00 0.00 3.74
81 82 0.322008 CTCTTCTCCCACACCCAAGC 60.322 60.000 0.00 0.00 0.00 4.01
82 83 1.002544 GTCTCTTCTCCCACACCCAAG 59.997 57.143 0.00 0.00 0.00 3.61
83 84 1.056660 GTCTCTTCTCCCACACCCAA 58.943 55.000 0.00 0.00 0.00 4.12
84 85 1.185618 CGTCTCTTCTCCCACACCCA 61.186 60.000 0.00 0.00 0.00 4.51
85 86 1.592223 CGTCTCTTCTCCCACACCC 59.408 63.158 0.00 0.00 0.00 4.61
86 87 1.592223 CCGTCTCTTCTCCCACACC 59.408 63.158 0.00 0.00 0.00 4.16
87 88 1.186267 ACCCGTCTCTTCTCCCACAC 61.186 60.000 0.00 0.00 0.00 3.82
88 89 1.155390 ACCCGTCTCTTCTCCCACA 59.845 57.895 0.00 0.00 0.00 4.17
89 90 1.186267 ACACCCGTCTCTTCTCCCAC 61.186 60.000 0.00 0.00 0.00 4.61
90 91 1.155390 ACACCCGTCTCTTCTCCCA 59.845 57.895 0.00 0.00 0.00 4.37
91 92 1.186267 ACACACCCGTCTCTTCTCCC 61.186 60.000 0.00 0.00 0.00 4.30
92 93 0.038159 CACACACCCGTCTCTTCTCC 60.038 60.000 0.00 0.00 0.00 3.71
93 94 0.038159 CCACACACCCGTCTCTTCTC 60.038 60.000 0.00 0.00 0.00 2.87
94 95 1.472662 CCCACACACCCGTCTCTTCT 61.473 60.000 0.00 0.00 0.00 2.85
95 96 1.004918 CCCACACACCCGTCTCTTC 60.005 63.158 0.00 0.00 0.00 2.87
96 97 3.148084 CCCACACACCCGTCTCTT 58.852 61.111 0.00 0.00 0.00 2.85
97 98 3.626924 GCCCACACACCCGTCTCT 61.627 66.667 0.00 0.00 0.00 3.10
102 103 4.082523 ATCTCGCCCACACACCCG 62.083 66.667 0.00 0.00 0.00 5.28
103 104 2.436646 CATCTCGCCCACACACCC 60.437 66.667 0.00 0.00 0.00 4.61
104 105 2.436646 CCATCTCGCCCACACACC 60.437 66.667 0.00 0.00 0.00 4.16
105 106 3.127533 GCCATCTCGCCCACACAC 61.128 66.667 0.00 0.00 0.00 3.82
106 107 2.689035 TTTGCCATCTCGCCCACACA 62.689 55.000 0.00 0.00 0.00 3.72
107 108 1.315257 ATTTGCCATCTCGCCCACAC 61.315 55.000 0.00 0.00 0.00 3.82
108 109 1.001020 ATTTGCCATCTCGCCCACA 60.001 52.632 0.00 0.00 0.00 4.17
109 110 1.434696 CATTTGCCATCTCGCCCAC 59.565 57.895 0.00 0.00 0.00 4.61
110 111 2.417257 GCATTTGCCATCTCGCCCA 61.417 57.895 0.00 0.00 34.31 5.36
111 112 2.414594 GCATTTGCCATCTCGCCC 59.585 61.111 0.00 0.00 34.31 6.13
121 122 1.005867 CTGGTGTGTGGGCATTTGC 60.006 57.895 0.00 0.00 41.14 3.68
122 123 1.005867 GCTGGTGTGTGGGCATTTG 60.006 57.895 0.00 0.00 0.00 2.32
123 124 2.209315 GGCTGGTGTGTGGGCATTT 61.209 57.895 0.00 0.00 0.00 2.32
124 125 2.601367 GGCTGGTGTGTGGGCATT 60.601 61.111 0.00 0.00 0.00 3.56
125 126 4.684134 GGGCTGGTGTGTGGGCAT 62.684 66.667 0.00 0.00 0.00 4.40
127 128 2.499303 ATAAGGGCTGGTGTGTGGGC 62.499 60.000 0.00 0.00 0.00 5.36
128 129 0.916086 TATAAGGGCTGGTGTGTGGG 59.084 55.000 0.00 0.00 0.00 4.61
129 130 1.742411 CGTATAAGGGCTGGTGTGTGG 60.742 57.143 0.00 0.00 0.00 4.17
130 131 1.066430 ACGTATAAGGGCTGGTGTGTG 60.066 52.381 0.00 0.00 0.00 3.82
131 132 1.066430 CACGTATAAGGGCTGGTGTGT 60.066 52.381 0.00 0.00 0.00 3.72
132 133 1.206132 TCACGTATAAGGGCTGGTGTG 59.794 52.381 0.00 0.00 0.00 3.82
133 134 1.480954 CTCACGTATAAGGGCTGGTGT 59.519 52.381 0.00 0.00 0.00 4.16
134 135 1.480954 ACTCACGTATAAGGGCTGGTG 59.519 52.381 0.00 0.00 0.00 4.17
135 136 1.480954 CACTCACGTATAAGGGCTGGT 59.519 52.381 0.00 0.00 0.00 4.00
136 137 1.754803 TCACTCACGTATAAGGGCTGG 59.245 52.381 0.00 0.00 0.00 4.85
137 138 3.520290 TTCACTCACGTATAAGGGCTG 57.480 47.619 0.00 0.00 0.00 4.85
138 139 4.020485 AGTTTTCACTCACGTATAAGGGCT 60.020 41.667 0.00 0.00 0.00 5.19
139 140 4.092968 CAGTTTTCACTCACGTATAAGGGC 59.907 45.833 0.00 0.00 0.00 5.19
140 141 5.475719 TCAGTTTTCACTCACGTATAAGGG 58.524 41.667 0.00 0.00 0.00 3.95
141 142 6.590292 ACATCAGTTTTCACTCACGTATAAGG 59.410 38.462 0.00 0.00 0.00 2.69
142 143 7.116376 ACACATCAGTTTTCACTCACGTATAAG 59.884 37.037 0.00 0.00 0.00 1.73
143 144 6.926826 ACACATCAGTTTTCACTCACGTATAA 59.073 34.615 0.00 0.00 0.00 0.98
144 145 6.364976 CACACATCAGTTTTCACTCACGTATA 59.635 38.462 0.00 0.00 0.00 1.47
145 146 5.177511 CACACATCAGTTTTCACTCACGTAT 59.822 40.000 0.00 0.00 0.00 3.06
146 147 4.506288 CACACATCAGTTTTCACTCACGTA 59.494 41.667 0.00 0.00 0.00 3.57
147 148 3.309682 CACACATCAGTTTTCACTCACGT 59.690 43.478 0.00 0.00 0.00 4.49
148 149 3.303329 CCACACATCAGTTTTCACTCACG 60.303 47.826 0.00 0.00 0.00 4.35
149 150 3.003689 CCCACACATCAGTTTTCACTCAC 59.996 47.826 0.00 0.00 0.00 3.51
150 151 3.213506 CCCACACATCAGTTTTCACTCA 58.786 45.455 0.00 0.00 0.00 3.41
151 152 2.030805 GCCCACACATCAGTTTTCACTC 60.031 50.000 0.00 0.00 0.00 3.51
152 153 1.956477 GCCCACACATCAGTTTTCACT 59.044 47.619 0.00 0.00 0.00 3.41
153 154 1.334960 CGCCCACACATCAGTTTTCAC 60.335 52.381 0.00 0.00 0.00 3.18
154 155 0.950836 CGCCCACACATCAGTTTTCA 59.049 50.000 0.00 0.00 0.00 2.69
155 156 1.234821 TCGCCCACACATCAGTTTTC 58.765 50.000 0.00 0.00 0.00 2.29
156 157 1.336755 GTTCGCCCACACATCAGTTTT 59.663 47.619 0.00 0.00 0.00 2.43
157 158 0.951558 GTTCGCCCACACATCAGTTT 59.048 50.000 0.00 0.00 0.00 2.66
158 159 0.108585 AGTTCGCCCACACATCAGTT 59.891 50.000 0.00 0.00 0.00 3.16
159 160 0.603707 CAGTTCGCCCACACATCAGT 60.604 55.000 0.00 0.00 0.00 3.41
160 161 1.915614 GCAGTTCGCCCACACATCAG 61.916 60.000 0.00 0.00 32.94 2.90
161 162 1.965930 GCAGTTCGCCCACACATCA 60.966 57.895 0.00 0.00 32.94 3.07
162 163 0.391130 TAGCAGTTCGCCCACACATC 60.391 55.000 0.00 0.00 44.04 3.06
163 164 0.036164 TTAGCAGTTCGCCCACACAT 59.964 50.000 0.00 0.00 44.04 3.21
164 165 0.179043 TTTAGCAGTTCGCCCACACA 60.179 50.000 0.00 0.00 44.04 3.72
165 166 0.237498 GTTTAGCAGTTCGCCCACAC 59.763 55.000 0.00 0.00 44.04 3.82
166 167 1.225376 CGTTTAGCAGTTCGCCCACA 61.225 55.000 0.00 0.00 44.04 4.17
167 168 1.495951 CGTTTAGCAGTTCGCCCAC 59.504 57.895 0.00 0.00 44.04 4.61
168 169 3.960237 CGTTTAGCAGTTCGCCCA 58.040 55.556 0.00 0.00 44.04 5.36
179 180 1.852067 GCCTGTGTGTGGGCGTTTAG 61.852 60.000 0.00 0.00 38.91 1.85
180 181 1.894756 GCCTGTGTGTGGGCGTTTA 60.895 57.895 0.00 0.00 38.91 2.01
181 182 3.216292 GCCTGTGTGTGGGCGTTT 61.216 61.111 0.00 0.00 38.91 3.60
186 187 4.351054 GAGGGGCCTGTGTGTGGG 62.351 72.222 0.84 0.00 0.00 4.61
187 188 4.351054 GGAGGGGCCTGTGTGTGG 62.351 72.222 0.84 0.00 0.00 4.17
188 189 4.704833 CGGAGGGGCCTGTGTGTG 62.705 72.222 0.84 0.00 0.00 3.82
200 201 3.411351 CGTTTCACCACGCGGAGG 61.411 66.667 12.47 15.17 35.59 4.30
201 202 3.411351 CCGTTTCACCACGCGGAG 61.411 66.667 12.47 2.99 46.33 4.63
203 204 3.708734 GTCCGTTTCACCACGCGG 61.709 66.667 12.47 0.00 44.95 6.46
204 205 4.054455 CGTCCGTTTCACCACGCG 62.054 66.667 3.53 3.53 38.93 6.01
205 206 2.963320 ACGTCCGTTTCACCACGC 60.963 61.111 0.00 0.00 38.93 5.34
206 207 1.879430 ACACGTCCGTTTCACCACG 60.879 57.895 0.00 0.00 40.02 4.94
207 208 1.639534 CACACGTCCGTTTCACCAC 59.360 57.895 0.00 0.00 0.00 4.16
208 209 1.521906 CCACACGTCCGTTTCACCA 60.522 57.895 0.00 0.00 0.00 4.17
209 210 2.248835 CCCACACGTCCGTTTCACC 61.249 63.158 0.00 0.00 0.00 4.02
210 211 2.888998 GCCCACACGTCCGTTTCAC 61.889 63.158 0.00 0.00 0.00 3.18
211 212 2.589442 GCCCACACGTCCGTTTCA 60.589 61.111 0.00 0.00 0.00 2.69
212 213 3.708734 CGCCCACACGTCCGTTTC 61.709 66.667 0.00 0.00 0.00 2.78
213 214 4.224274 TCGCCCACACGTCCGTTT 62.224 61.111 0.00 0.00 0.00 3.60
214 215 4.955774 GTCGCCCACACGTCCGTT 62.956 66.667 0.00 0.00 0.00 4.44
234 235 3.284449 GGTGTGTGGGCGTTCACC 61.284 66.667 7.58 0.00 42.40 4.02
235 236 2.515057 TGGTGTGTGGGCGTTCAC 60.515 61.111 3.83 3.83 38.09 3.18
236 237 2.203139 CTGGTGTGTGGGCGTTCA 60.203 61.111 0.00 0.00 0.00 3.18
237 238 3.660111 GCTGGTGTGTGGGCGTTC 61.660 66.667 0.00 0.00 0.00 3.95
240 241 3.958147 CTAGGCTGGTGTGTGGGCG 62.958 68.421 0.00 0.00 0.00 6.13
241 242 2.045926 CTAGGCTGGTGTGTGGGC 60.046 66.667 0.00 0.00 0.00 5.36
242 243 1.296715 GACTAGGCTGGTGTGTGGG 59.703 63.158 8.74 0.00 0.00 4.61
243 244 1.194781 AGGACTAGGCTGGTGTGTGG 61.195 60.000 8.74 0.00 0.00 4.17
244 245 1.557099 TAGGACTAGGCTGGTGTGTG 58.443 55.000 8.74 0.00 0.00 3.82
245 246 2.111384 CATAGGACTAGGCTGGTGTGT 58.889 52.381 8.74 0.00 0.00 3.72
246 247 2.111384 ACATAGGACTAGGCTGGTGTG 58.889 52.381 8.74 4.62 0.00 3.82
247 248 2.111384 CACATAGGACTAGGCTGGTGT 58.889 52.381 8.74 0.00 0.00 4.16
248 249 1.414181 CCACATAGGACTAGGCTGGTG 59.586 57.143 8.74 0.00 41.22 4.17
249 250 1.794714 CCACATAGGACTAGGCTGGT 58.205 55.000 2.00 2.00 41.22 4.00
250 251 0.394565 GCCACATAGGACTAGGCTGG 59.605 60.000 0.00 0.00 42.01 4.85
251 252 1.123077 TGCCACATAGGACTAGGCTG 58.877 55.000 0.00 0.00 45.42 4.85
252 253 1.123928 GTGCCACATAGGACTAGGCT 58.876 55.000 0.00 0.00 45.42 4.58
253 254 0.106894 GGTGCCACATAGGACTAGGC 59.893 60.000 0.00 0.00 45.41 3.93
254 255 1.139058 GTGGTGCCACATAGGACTAGG 59.861 57.143 15.81 0.00 45.53 3.02
255 256 2.604046 GTGGTGCCACATAGGACTAG 57.396 55.000 15.81 0.00 45.53 2.57
265 266 4.341827 GCATGTTTGTGGTGCCAC 57.658 55.556 14.04 14.04 46.33 5.01
268 269 0.388659 TCTTGGCATGTTTGTGGTGC 59.611 50.000 0.00 0.00 38.12 5.01
269 270 3.319755 GAATCTTGGCATGTTTGTGGTG 58.680 45.455 1.85 0.00 0.00 4.17
270 271 2.030007 CGAATCTTGGCATGTTTGTGGT 60.030 45.455 1.85 0.00 0.00 4.16
271 272 2.030007 ACGAATCTTGGCATGTTTGTGG 60.030 45.455 1.85 0.00 0.00 4.17
272 273 2.981805 CACGAATCTTGGCATGTTTGTG 59.018 45.455 15.06 15.06 31.75 3.33
273 274 2.607771 GCACGAATCTTGGCATGTTTGT 60.608 45.455 1.85 3.16 0.00 2.83
274 275 1.987770 GCACGAATCTTGGCATGTTTG 59.012 47.619 1.85 2.65 0.00 2.93
275 276 1.612950 TGCACGAATCTTGGCATGTTT 59.387 42.857 0.00 0.00 0.00 2.83
276 277 1.068333 GTGCACGAATCTTGGCATGTT 60.068 47.619 0.00 0.00 38.68 2.71
277 278 0.523072 GTGCACGAATCTTGGCATGT 59.477 50.000 0.00 0.00 38.68 3.21
278 279 0.179156 GGTGCACGAATCTTGGCATG 60.179 55.000 11.45 0.00 38.68 4.06
279 280 1.315257 GGGTGCACGAATCTTGGCAT 61.315 55.000 11.45 0.00 38.68 4.40
280 281 1.971167 GGGTGCACGAATCTTGGCA 60.971 57.895 11.45 0.00 0.00 4.92
281 282 1.971167 TGGGTGCACGAATCTTGGC 60.971 57.895 11.45 0.00 0.00 4.52
282 283 0.888736 TGTGGGTGCACGAATCTTGG 60.889 55.000 11.45 0.00 0.00 3.61
283 284 0.950836 TTGTGGGTGCACGAATCTTG 59.049 50.000 11.45 0.00 0.00 3.02
284 285 1.336755 GTTTGTGGGTGCACGAATCTT 59.663 47.619 11.45 0.00 31.83 2.40
285 286 0.951558 GTTTGTGGGTGCACGAATCT 59.048 50.000 11.45 0.00 31.83 2.40
286 287 0.385473 CGTTTGTGGGTGCACGAATC 60.385 55.000 11.45 2.00 34.49 2.52
287 288 1.652012 CGTTTGTGGGTGCACGAAT 59.348 52.632 11.45 0.00 34.49 3.34
288 289 2.473760 CCGTTTGTGGGTGCACGAA 61.474 57.895 11.45 0.00 34.49 3.85
289 290 2.897846 CCGTTTGTGGGTGCACGA 60.898 61.111 11.45 0.00 34.49 4.35
290 291 2.897846 TCCGTTTGTGGGTGCACG 60.898 61.111 11.45 0.00 0.00 5.34
291 292 2.719354 GTCCGTTTGTGGGTGCAC 59.281 61.111 8.80 8.80 0.00 4.57
292 293 2.897846 CGTCCGTTTGTGGGTGCA 60.898 61.111 0.00 0.00 0.00 4.57
293 294 4.322385 GCGTCCGTTTGTGGGTGC 62.322 66.667 0.00 0.00 0.00 5.01
294 295 4.007940 CGCGTCCGTTTGTGGGTG 62.008 66.667 0.00 0.00 0.00 4.61
296 297 4.973055 TCCGCGTCCGTTTGTGGG 62.973 66.667 4.92 0.00 36.41 4.61
297 298 2.736682 GATCCGCGTCCGTTTGTGG 61.737 63.158 4.92 0.00 37.09 4.17
298 299 2.736682 GGATCCGCGTCCGTTTGTG 61.737 63.158 4.92 0.00 0.00 3.33
299 300 2.433664 GGATCCGCGTCCGTTTGT 60.434 61.111 4.92 0.00 0.00 2.83
300 301 2.433491 TGGATCCGCGTCCGTTTG 60.433 61.111 7.39 0.00 41.35 2.93
301 302 2.433664 GTGGATCCGCGTCCGTTT 60.434 61.111 10.09 0.00 41.35 3.60
302 303 4.789075 CGTGGATCCGCGTCCGTT 62.789 66.667 34.27 0.00 43.86 4.44
320 321 2.324330 TTTGCATCTCGCCCACACG 61.324 57.895 0.00 0.00 41.33 4.49
321 322 1.210155 GTTTGCATCTCGCCCACAC 59.790 57.895 0.00 0.00 41.33 3.82
322 323 2.324330 CGTTTGCATCTCGCCCACA 61.324 57.895 0.00 0.00 41.33 4.17
323 324 2.480555 CGTTTGCATCTCGCCCAC 59.519 61.111 0.00 0.00 41.33 4.61
324 325 3.430862 GCGTTTGCATCTCGCCCA 61.431 61.111 16.09 0.00 43.41 5.36
328 329 2.324330 TGTGGGCGTTTGCATCTCG 61.324 57.895 0.00 0.00 45.35 4.04
329 330 1.210155 GTGTGGGCGTTTGCATCTC 59.790 57.895 0.00 0.00 45.35 2.75
330 331 2.616330 CGTGTGGGCGTTTGCATCT 61.616 57.895 0.00 0.00 45.35 2.90
331 332 1.570347 TACGTGTGGGCGTTTGCATC 61.570 55.000 0.00 0.00 43.04 3.91
332 333 0.958382 ATACGTGTGGGCGTTTGCAT 60.958 50.000 0.00 0.00 43.04 3.96
333 334 1.598407 ATACGTGTGGGCGTTTGCA 60.598 52.632 0.00 0.00 43.04 4.08
334 335 1.154301 CATACGTGTGGGCGTTTGC 60.154 57.895 4.09 0.00 43.04 3.68
335 336 1.499949 CCATACGTGTGGGCGTTTG 59.500 57.895 22.66 0.00 43.04 2.93
336 337 3.975246 CCATACGTGTGGGCGTTT 58.025 55.556 22.66 0.00 43.04 3.60
347 348 1.662122 GGAAACACTAACGCCCATACG 59.338 52.381 0.00 0.00 39.50 3.06
348 349 1.662122 CGGAAACACTAACGCCCATAC 59.338 52.381 0.00 0.00 0.00 2.39
349 350 1.275856 ACGGAAACACTAACGCCCATA 59.724 47.619 0.00 0.00 0.00 2.74
350 351 0.035739 ACGGAAACACTAACGCCCAT 59.964 50.000 0.00 0.00 0.00 4.00
351 352 0.678395 TACGGAAACACTAACGCCCA 59.322 50.000 0.00 0.00 0.00 5.36
352 353 1.337167 ACTACGGAAACACTAACGCCC 60.337 52.381 0.00 0.00 0.00 6.13
353 354 2.070262 ACTACGGAAACACTAACGCC 57.930 50.000 0.00 0.00 0.00 5.68
354 355 6.142958 GGATATAACTACGGAAACACTAACGC 59.857 42.308 0.00 0.00 0.00 4.84
355 356 6.638468 GGGATATAACTACGGAAACACTAACG 59.362 42.308 0.00 0.00 0.00 3.18
356 357 7.720442 AGGGATATAACTACGGAAACACTAAC 58.280 38.462 0.00 0.00 0.00 2.34
357 358 7.902920 AGGGATATAACTACGGAAACACTAA 57.097 36.000 0.00 0.00 0.00 2.24
358 359 7.902920 AAGGGATATAACTACGGAAACACTA 57.097 36.000 0.00 0.00 0.00 2.74
359 360 6.803366 AAGGGATATAACTACGGAAACACT 57.197 37.500 0.00 0.00 0.00 3.55
360 361 7.043565 TCAAAGGGATATAACTACGGAAACAC 58.956 38.462 0.00 0.00 0.00 3.32
361 362 7.185318 TCAAAGGGATATAACTACGGAAACA 57.815 36.000 0.00 0.00 0.00 2.83
362 363 7.011763 GGTTCAAAGGGATATAACTACGGAAAC 59.988 40.741 0.00 0.00 0.00 2.78
363 364 7.049754 GGTTCAAAGGGATATAACTACGGAAA 58.950 38.462 0.00 0.00 0.00 3.13
364 365 6.384886 AGGTTCAAAGGGATATAACTACGGAA 59.615 38.462 0.00 0.00 0.00 4.30
365 366 5.901276 AGGTTCAAAGGGATATAACTACGGA 59.099 40.000 0.00 0.00 0.00 4.69
366 367 6.170846 AGGTTCAAAGGGATATAACTACGG 57.829 41.667 0.00 0.00 0.00 4.02
367 368 7.046033 ACAAGGTTCAAAGGGATATAACTACG 58.954 38.462 0.00 0.00 0.00 3.51
368 369 8.044908 TGACAAGGTTCAAAGGGATATAACTAC 58.955 37.037 0.00 0.00 0.00 2.73
369 370 8.044908 GTGACAAGGTTCAAAGGGATATAACTA 58.955 37.037 0.00 0.00 0.00 2.24
370 371 6.884836 GTGACAAGGTTCAAAGGGATATAACT 59.115 38.462 0.00 0.00 0.00 2.24
371 372 6.884836 AGTGACAAGGTTCAAAGGGATATAAC 59.115 38.462 0.00 0.00 0.00 1.89
372 373 7.027874 AGTGACAAGGTTCAAAGGGATATAA 57.972 36.000 0.00 0.00 0.00 0.98
373 374 6.636454 AGTGACAAGGTTCAAAGGGATATA 57.364 37.500 0.00 0.00 0.00 0.86
374 375 5.520748 AGTGACAAGGTTCAAAGGGATAT 57.479 39.130 0.00 0.00 0.00 1.63
375 376 4.993705 AGTGACAAGGTTCAAAGGGATA 57.006 40.909 0.00 0.00 0.00 2.59
376 377 3.884037 AGTGACAAGGTTCAAAGGGAT 57.116 42.857 0.00 0.00 0.00 3.85
377 378 4.781775 TTAGTGACAAGGTTCAAAGGGA 57.218 40.909 0.00 0.00 0.00 4.20
378 379 5.070001 TGATTAGTGACAAGGTTCAAAGGG 58.930 41.667 0.00 0.00 0.00 3.95
379 380 6.633500 TTGATTAGTGACAAGGTTCAAAGG 57.367 37.500 0.00 0.00 0.00 3.11
382 383 8.296713 GCTTTATTGATTAGTGACAAGGTTCAA 58.703 33.333 0.00 0.00 0.00 2.69
383 384 7.360861 CGCTTTATTGATTAGTGACAAGGTTCA 60.361 37.037 0.00 0.00 0.00 3.18
384 385 6.961554 CGCTTTATTGATTAGTGACAAGGTTC 59.038 38.462 0.00 0.00 0.00 3.62
385 386 6.653320 TCGCTTTATTGATTAGTGACAAGGTT 59.347 34.615 0.00 0.00 0.00 3.50
386 387 6.170506 TCGCTTTATTGATTAGTGACAAGGT 58.829 36.000 0.00 0.00 0.00 3.50
387 388 6.313905 ACTCGCTTTATTGATTAGTGACAAGG 59.686 38.462 0.00 0.00 0.00 3.61
388 389 7.148573 ACACTCGCTTTATTGATTAGTGACAAG 60.149 37.037 0.00 0.00 37.04 3.16
389 390 6.649141 ACACTCGCTTTATTGATTAGTGACAA 59.351 34.615 0.00 0.00 37.04 3.18
390 391 6.090763 CACACTCGCTTTATTGATTAGTGACA 59.909 38.462 0.00 0.00 37.04 3.58
391 392 6.090898 ACACACTCGCTTTATTGATTAGTGAC 59.909 38.462 0.00 0.00 37.04 3.67
392 393 6.163476 ACACACTCGCTTTATTGATTAGTGA 58.837 36.000 0.00 0.00 37.04 3.41
393 394 6.408858 ACACACTCGCTTTATTGATTAGTG 57.591 37.500 0.00 0.00 38.97 2.74
394 395 7.435068 AAACACACTCGCTTTATTGATTAGT 57.565 32.000 0.00 0.00 0.00 2.24
395 396 8.728088 AAAAACACACTCGCTTTATTGATTAG 57.272 30.769 0.00 0.00 0.00 1.73
424 425 5.590663 GGATCTGCCTAACCTTTCTTTTAGG 59.409 44.000 3.43 3.43 45.07 2.69
425 426 5.590663 GGGATCTGCCTAACCTTTCTTTTAG 59.409 44.000 0.00 0.00 36.66 1.85
426 427 5.014755 TGGGATCTGCCTAACCTTTCTTTTA 59.985 40.000 0.00 0.00 36.66 1.52
427 428 4.202673 TGGGATCTGCCTAACCTTTCTTTT 60.203 41.667 0.00 0.00 36.66 2.27
428 429 3.333680 TGGGATCTGCCTAACCTTTCTTT 59.666 43.478 0.00 0.00 36.66 2.52
429 430 2.919602 TGGGATCTGCCTAACCTTTCTT 59.080 45.455 0.00 0.00 36.66 2.52
430 431 2.507471 CTGGGATCTGCCTAACCTTTCT 59.493 50.000 0.00 0.00 36.66 2.52
431 432 2.239907 ACTGGGATCTGCCTAACCTTTC 59.760 50.000 0.00 0.00 36.66 2.62
432 433 2.279173 ACTGGGATCTGCCTAACCTTT 58.721 47.619 0.00 0.00 36.66 3.11
433 434 1.972588 ACTGGGATCTGCCTAACCTT 58.027 50.000 0.00 0.00 36.66 3.50
434 435 1.972588 AACTGGGATCTGCCTAACCT 58.027 50.000 0.00 0.00 36.66 3.50
435 436 2.755103 CAAAACTGGGATCTGCCTAACC 59.245 50.000 0.00 0.00 36.66 2.85
436 437 3.421844 ACAAAACTGGGATCTGCCTAAC 58.578 45.455 0.00 0.00 36.66 2.34
437 438 3.806949 ACAAAACTGGGATCTGCCTAA 57.193 42.857 0.00 0.00 36.66 2.69
438 439 3.420893 CAACAAAACTGGGATCTGCCTA 58.579 45.455 0.00 0.00 36.66 3.93
439 440 2.242043 CAACAAAACTGGGATCTGCCT 58.758 47.619 0.00 0.00 36.66 4.75
440 441 1.273327 CCAACAAAACTGGGATCTGCC 59.727 52.381 0.00 0.00 0.00 4.85
441 442 2.730550 CCAACAAAACTGGGATCTGC 57.269 50.000 0.00 0.00 0.00 4.26
448 449 3.244181 CCCTGAAATCCCAACAAAACTGG 60.244 47.826 0.00 0.00 0.00 4.00
451 452 3.244078 GGACCCTGAAATCCCAACAAAAC 60.244 47.826 0.00 0.00 0.00 2.43
460 461 1.739371 CGAGTTCGGACCCTGAAATCC 60.739 57.143 9.48 0.00 37.19 3.01
463 464 1.042229 TTCGAGTTCGGACCCTGAAA 58.958 50.000 1.26 0.00 40.29 2.69
474 476 5.110598 GGATTAGTTCCTCCTTTCGAGTTC 58.889 45.833 0.00 0.00 41.78 3.01
487 489 4.390909 CACACTAACGGTTGGATTAGTTCC 59.609 45.833 11.41 0.00 45.69 3.62
491 493 2.347452 CGCACACTAACGGTTGGATTAG 59.653 50.000 11.41 0.00 35.03 1.73
495 497 0.319211 CTCGCACACTAACGGTTGGA 60.319 55.000 11.41 0.00 0.00 3.53
497 499 1.455786 CTTCTCGCACACTAACGGTTG 59.544 52.381 3.07 0.00 0.00 3.77
498 500 1.779569 CTTCTCGCACACTAACGGTT 58.220 50.000 0.00 0.00 0.00 4.44
499 501 0.666577 GCTTCTCGCACACTAACGGT 60.667 55.000 0.00 0.00 38.92 4.83
500 502 0.666274 TGCTTCTCGCACACTAACGG 60.666 55.000 0.00 0.00 45.47 4.44
501 503 2.809181 TGCTTCTCGCACACTAACG 58.191 52.632 0.00 0.00 45.47 3.18
511 513 0.640768 GATCGAACCGTTGCTTCTCG 59.359 55.000 0.00 0.00 0.00 4.04
512 514 1.656095 CTGATCGAACCGTTGCTTCTC 59.344 52.381 0.00 0.00 0.00 2.87
514 516 1.710013 TCTGATCGAACCGTTGCTTC 58.290 50.000 0.00 0.00 0.00 3.86
515 517 2.386661 ATCTGATCGAACCGTTGCTT 57.613 45.000 0.00 0.00 0.00 3.91
518 520 2.616960 TCCAATCTGATCGAACCGTTG 58.383 47.619 0.00 0.00 0.00 4.10
519 521 3.133003 AGATCCAATCTGATCGAACCGTT 59.867 43.478 0.00 0.00 44.72 4.44
521 523 3.243535 TGAGATCCAATCTGATCGAACCG 60.244 47.826 0.00 0.00 44.72 4.44
522 524 4.305769 CTGAGATCCAATCTGATCGAACC 58.694 47.826 0.00 0.00 44.72 3.62
523 525 3.740321 GCTGAGATCCAATCTGATCGAAC 59.260 47.826 0.00 0.00 44.72 3.95
526 533 3.318886 CAGCTGAGATCCAATCTGATCG 58.681 50.000 8.42 0.00 44.72 3.69
528 535 2.438392 TGCAGCTGAGATCCAATCTGAT 59.562 45.455 20.43 0.00 40.38 2.90
535 542 2.429971 CTCTAGTTGCAGCTGAGATCCA 59.570 50.000 20.43 1.69 0.00 3.41
566 573 1.303561 TGGAGGTCCAGCATGTTGC 60.304 57.895 3.65 0.00 45.46 4.17
583 590 0.516322 CGTGCACGCGTTAATGTCTG 60.516 55.000 28.16 0.00 0.00 3.51
638 664 1.226603 GCTAGGAGTACGCGTGTGG 60.227 63.158 24.59 4.25 0.00 4.17
777 838 5.441718 ACCATGGTCATCTGAATAACACT 57.558 39.130 13.00 0.00 0.00 3.55
805 866 8.908903 AGGAGCGGTCTCTATATATAAATCTTG 58.091 37.037 15.18 0.00 39.31 3.02
820 881 2.358939 TTTTAACGAGGAGCGGTCTC 57.641 50.000 15.18 9.02 46.49 3.36
821 882 2.410939 GTTTTTAACGAGGAGCGGTCT 58.589 47.619 15.18 0.05 46.49 3.85
840 901 3.889538 CCTTTTCTCTTTTTCTTCGGGGT 59.110 43.478 0.00 0.00 0.00 4.95
863 2596 2.192861 TGTGGTCTGCGGCCTTTTG 61.193 57.895 0.00 0.00 0.00 2.44
889 2622 3.155167 GCCTGGACGGGACCTAGG 61.155 72.222 7.41 7.41 34.07 3.02
890 2623 1.961180 CTTGCCTGGACGGGACCTAG 61.961 65.000 0.00 0.00 30.06 3.02
974 2707 4.726254 CGGGGAGGTGGGTGGGTA 62.726 72.222 0.00 0.00 0.00 3.69
1160 3189 3.072468 CGTAGGGGTTGCCGGAGA 61.072 66.667 5.05 0.00 0.00 3.71
1209 3238 0.771127 TTTGGGACTCACTCTTGGGG 59.229 55.000 0.00 0.00 0.00 4.96
1233 3262 2.018644 GCAATCGGAAGCAAGATGGGA 61.019 52.381 1.50 0.00 0.00 4.37
1453 3486 2.173519 TCGATCTAAACCGGAACCACT 58.826 47.619 9.46 0.00 0.00 4.00
1525 3559 2.032178 GCTAAGCCTGCTAAATTCCGTG 59.968 50.000 0.00 0.00 0.00 4.94
1650 3685 4.513692 CACTAACGAAATCCAGTGGAACAA 59.486 41.667 17.71 0.00 44.16 2.83
1677 3712 0.034756 GCCCACCAAAATCCCAACAC 59.965 55.000 0.00 0.00 0.00 3.32
1805 3849 6.398095 ACCCAATCACATAAAGCTAAAAAGC 58.602 36.000 0.00 0.00 0.00 3.51
1918 3962 8.980143 AATACAATTTAGAACATGGGAAAACG 57.020 30.769 0.00 0.00 0.00 3.60
2070 4141 4.520111 AGAGCTCTGCACTATGATAGTCTG 59.480 45.833 17.42 3.09 36.76 3.51
2085 4156 4.915158 TCATGTCATACTGAGAGCTCTG 57.085 45.455 23.91 10.55 35.10 3.35
2414 4485 5.151454 TCATTTTTGTCCCCAACCTTGTAT 58.849 37.500 0.00 0.00 0.00 2.29
2478 4549 8.831550 GTTGAGCAGATTTAGTTATTTCCTAGG 58.168 37.037 0.82 0.82 0.00 3.02
2635 4708 6.881602 CCTCCCTGCATTCCTAAATATAAGTC 59.118 42.308 0.00 0.00 0.00 3.01
2636 4709 6.240292 CCCTCCCTGCATTCCTAAATATAAGT 60.240 42.308 0.00 0.00 0.00 2.24
2637 4710 6.012508 TCCCTCCCTGCATTCCTAAATATAAG 60.013 42.308 0.00 0.00 0.00 1.73
2640 4713 4.251169 TCCCTCCCTGCATTCCTAAATAT 58.749 43.478 0.00 0.00 0.00 1.28
2653 4829 3.395607 TGTTCATTCCATATCCCTCCCTG 59.604 47.826 0.00 0.00 0.00 4.45
2742 4925 4.334552 TCCATGAAGCATAGACAAAAGCA 58.665 39.130 0.00 0.00 0.00 3.91
2844 5040 9.472995 CTATAACTACAACATTTGCAAGTTACG 57.527 33.333 0.00 0.00 41.33 3.18
3173 5381 3.421567 GGCAACTCCCAGTTTGTCT 57.578 52.632 0.00 0.00 36.03 3.41
3222 5430 1.792367 TCAAAGTGACACGAATCGCAG 59.208 47.619 1.15 0.00 0.00 5.18
3246 5454 2.517650 TGCCACAAATCGAAAAACCC 57.482 45.000 0.00 0.00 0.00 4.11
3258 5466 3.138839 ACAGGATGGATATGATGCCACAA 59.861 43.478 0.00 0.00 43.62 3.33
3349 5565 4.085357 ACAAGCATACAACCTCAGAACA 57.915 40.909 0.00 0.00 0.00 3.18
3398 5614 4.082895 AGTGCATCTTTCTTTGACTGCATC 60.083 41.667 0.00 0.00 41.17 3.91
3465 5686 2.079158 CGGTTCAAGATGATGTGCACT 58.921 47.619 19.41 3.19 0.00 4.40
3471 5692 1.645034 ACGAGCGGTTCAAGATGATG 58.355 50.000 0.00 0.00 0.00 3.07
3485 5706 0.389948 AACCCACAGATCGAACGAGC 60.390 55.000 4.29 4.29 0.00 5.03
3502 5723 7.148018 ACCAAACATGACAAGATGGATATGAAC 60.148 37.037 0.00 0.00 0.00 3.18
3515 5736 7.581213 AGATAACAAAGACCAAACATGACAA 57.419 32.000 0.00 0.00 0.00 3.18
3754 6094 6.308282 TGTCAAACAAAAACAATCAACGGTAC 59.692 34.615 0.00 0.00 0.00 3.34
3782 6122 8.255206 ACAATGACCGACAATCAATACTAGTAA 58.745 33.333 6.70 0.00 0.00 2.24
3784 6124 6.640518 ACAATGACCGACAATCAATACTAGT 58.359 36.000 0.00 0.00 0.00 2.57
3785 6125 7.921214 ACTACAATGACCGACAATCAATACTAG 59.079 37.037 0.00 0.00 0.00 2.57
3786 6126 7.778083 ACTACAATGACCGACAATCAATACTA 58.222 34.615 0.00 0.00 0.00 1.82
3787 6127 6.640518 ACTACAATGACCGACAATCAATACT 58.359 36.000 0.00 0.00 0.00 2.12
3788 6128 6.018994 GGACTACAATGACCGACAATCAATAC 60.019 42.308 0.00 0.00 0.00 1.89
3820 6160 0.391130 TCACCGGTAGCAGCATGAAC 60.391 55.000 6.87 0.00 39.69 3.18
3839 6179 3.510360 AGAGACCATACTGCTACGTGTTT 59.490 43.478 0.00 0.00 0.00 2.83
3840 6180 3.090037 AGAGACCATACTGCTACGTGTT 58.910 45.455 0.00 0.00 0.00 3.32
3842 6182 3.626217 TGTAGAGACCATACTGCTACGTG 59.374 47.826 0.00 0.00 35.41 4.49
3849 6189 7.283354 TGTCAAGACTATGTAGAGACCATACTG 59.717 40.741 1.53 0.00 0.00 2.74
3867 6207 0.250513 CTGGGCCTACCTGTCAAGAC 59.749 60.000 4.53 0.00 41.11 3.01
3870 6210 0.909610 CCTCTGGGCCTACCTGTCAA 60.910 60.000 4.53 0.00 41.11 3.18
3886 6226 2.284995 AGGGTGGAGAGGCACCTC 60.285 66.667 8.74 8.74 41.07 3.85
3954 6342 2.605580 GGAGGTTGCTTCTTTTTGCTCG 60.606 50.000 0.00 0.00 0.00 5.03
3999 6387 4.387598 CTCTCCCATGTGAAGGATGATTC 58.612 47.826 0.00 0.00 0.00 2.52
4017 6405 1.251251 AAACCTGCCACAATGCTCTC 58.749 50.000 0.00 0.00 0.00 3.20
4068 7667 9.220767 GATATTTATTTGAGATCCTGTACCCAC 57.779 37.037 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.