Multiple sequence alignment - TraesCS4D01G300700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G300700 chr4D 100.000 2765 0 0 1 2765 469144006 469141242 0.000000e+00 5107.0
1 TraesCS4D01G300700 chr4D 95.359 237 5 1 462 692 469136989 469137225 3.360000e-99 372.0
2 TraesCS4D01G300700 chr2D 98.742 2306 27 2 461 2765 257570015 257567711 0.000000e+00 4096.0
3 TraesCS4D01G300700 chr2D 98.265 2305 20 3 462 2765 584615414 584613129 0.000000e+00 4017.0
4 TraesCS4D01G300700 chr2D 94.937 237 6 1 462 692 257563442 257563678 1.560000e-97 366.0
5 TraesCS4D01G300700 chr2D 94.937 237 6 1 462 692 584608863 584609099 1.560000e-97 366.0
6 TraesCS4D01G300700 chr2D 87.379 103 12 1 2 103 630950043 630949941 1.740000e-22 117.0
7 TraesCS4D01G300700 chr6A 94.359 1489 76 3 462 1942 8875862 8874374 0.000000e+00 2278.0
8 TraesCS4D01G300700 chr6A 95.342 644 27 2 2124 2765 8874345 8873703 0.000000e+00 1020.0
9 TraesCS4D01G300700 chr6A 86.973 261 23 6 440 692 8869408 8869665 1.620000e-72 283.0
10 TraesCS4D01G300700 chr6A 71.464 806 201 24 925 1719 144491876 144492663 1.310000e-43 187.0
11 TraesCS4D01G300700 chr7D 79.869 1217 206 29 462 1660 80724668 80723473 0.000000e+00 854.0
12 TraesCS4D01G300700 chr7D 89.320 103 10 1 2 103 453265296 453265194 8.040000e-26 128.0
13 TraesCS4D01G300700 chr7D 89.888 89 8 1 3 91 106259582 106259669 2.250000e-21 113.0
14 TraesCS4D01G300700 chr6B 77.316 1252 242 26 462 1701 314788803 314787582 0.000000e+00 701.0
15 TraesCS4D01G300700 chr1B 93.333 240 10 2 226 461 268593084 268593321 1.580000e-92 350.0
16 TraesCS4D01G300700 chr1B 83.065 248 8 6 226 461 198755884 198755659 7.810000e-46 195.0
17 TraesCS4D01G300700 chr2B 92.887 239 11 2 226 460 470514772 470514536 2.640000e-90 342.0
18 TraesCS4D01G300700 chr2B 83.065 248 8 8 226 461 73631321 73631546 7.810000e-46 195.0
19 TraesCS4D01G300700 chr2B 88.421 95 11 0 2 96 675369874 675369780 6.260000e-22 115.0
20 TraesCS4D01G300700 chr7A 92.704 233 15 1 1 231 727766864 727767096 4.410000e-88 335.0
21 TraesCS4D01G300700 chr7A 83.065 248 8 7 226 461 690365678 690365453 7.810000e-46 195.0
22 TraesCS4D01G300700 chr4B 92.116 241 13 2 225 461 607044438 607044676 4.410000e-88 335.0
23 TraesCS4D01G300700 chr4A 90.213 235 17 3 231 461 323803972 323804204 4.480000e-78 302.0
24 TraesCS4D01G300700 chr3A 89.076 238 17 6 1 235 93499545 93499314 1.250000e-73 287.0
25 TraesCS4D01G300700 chr2A 83.065 248 8 7 226 461 261672520 261672295 7.810000e-46 195.0
26 TraesCS4D01G300700 chr2A 83.065 248 8 7 226 461 279503990 279503765 7.810000e-46 195.0
27 TraesCS4D01G300700 chr1A 83.065 248 8 7 226 461 307058333 307058558 7.810000e-46 195.0
28 TraesCS4D01G300700 chr5B 70.651 845 209 32 899 1727 11286606 11285785 1.720000e-32 150.0
29 TraesCS4D01G300700 chrUn 89.474 95 9 1 1 95 29985016 29985109 4.840000e-23 119.0
30 TraesCS4D01G300700 chr3B 87.255 102 13 0 2 103 797627976 797627875 1.740000e-22 117.0
31 TraesCS4D01G300700 chr3B 88.679 53 5 1 2541 2593 575281121 575281070 2.300000e-06 63.9
32 TraesCS4D01G300700 chr5A 88.421 95 10 1 1 95 706477067 706477160 2.250000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G300700 chr4D 469141242 469144006 2764 True 5107 5107 100.0000 1 2765 1 chr4D.!!$R1 2764
1 TraesCS4D01G300700 chr2D 257567711 257570015 2304 True 4096 4096 98.7420 461 2765 1 chr2D.!!$R1 2304
2 TraesCS4D01G300700 chr2D 584613129 584615414 2285 True 4017 4017 98.2650 462 2765 1 chr2D.!!$R2 2303
3 TraesCS4D01G300700 chr6A 8873703 8875862 2159 True 1649 2278 94.8505 462 2765 2 chr6A.!!$R1 2303
4 TraesCS4D01G300700 chr7D 80723473 80724668 1195 True 854 854 79.8690 462 1660 1 chr7D.!!$R1 1198
5 TraesCS4D01G300700 chr6B 314787582 314788803 1221 True 701 701 77.3160 462 1701 1 chr6B.!!$R1 1239

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
437 438 0.037877 ACAGAAGGCTGATGCTTGCT 59.962 50.0 0.00 0.0 45.17 3.91 F
1274 1299 0.179124 CAGCGCTGGGTAAGAGAGAC 60.179 60.0 29.88 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1388 1431 3.759086 TGGTCGTATGATCTCTATCAGGC 59.241 47.826 0.0 0.0 45.17 4.85 R
2736 2781 2.464157 GCAGGAAGCTACAAGAGTGT 57.536 50.000 0.0 0.0 42.09 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 8.324163 TCAGTTTCTTAAAAGATTCTGCTACC 57.676 34.615 14.42 0.00 36.73 3.18
55 56 7.936847 TCAGTTTCTTAAAAGATTCTGCTACCA 59.063 33.333 14.42 2.13 36.73 3.25
56 57 8.734386 CAGTTTCTTAAAAGATTCTGCTACCAT 58.266 33.333 9.86 0.00 34.49 3.55
57 58 8.951243 AGTTTCTTAAAAGATTCTGCTACCATC 58.049 33.333 0.00 0.00 34.49 3.51
58 59 8.730680 GTTTCTTAAAAGATTCTGCTACCATCA 58.269 33.333 0.00 0.00 34.49 3.07
59 60 9.466497 TTTCTTAAAAGATTCTGCTACCATCAT 57.534 29.630 0.00 0.00 34.49 2.45
60 61 8.668510 TCTTAAAAGATTCTGCTACCATCATC 57.331 34.615 0.00 0.00 0.00 2.92
61 62 8.267183 TCTTAAAAGATTCTGCTACCATCATCA 58.733 33.333 0.00 0.00 0.00 3.07
62 63 8.806429 TTAAAAGATTCTGCTACCATCATCAA 57.194 30.769 0.00 0.00 0.00 2.57
63 64 7.893124 AAAAGATTCTGCTACCATCATCAAT 57.107 32.000 0.00 0.00 0.00 2.57
64 65 7.893124 AAAGATTCTGCTACCATCATCAATT 57.107 32.000 0.00 0.00 0.00 2.32
65 66 7.893124 AAGATTCTGCTACCATCATCAATTT 57.107 32.000 0.00 0.00 0.00 1.82
66 67 7.893124 AGATTCTGCTACCATCATCAATTTT 57.107 32.000 0.00 0.00 0.00 1.82
67 68 8.985315 AGATTCTGCTACCATCATCAATTTTA 57.015 30.769 0.00 0.00 0.00 1.52
68 69 9.584008 AGATTCTGCTACCATCATCAATTTTAT 57.416 29.630 0.00 0.00 0.00 1.40
93 94 6.772360 TTTTCTGCATGCATGTAATTAGGA 57.228 33.333 26.79 13.26 0.00 2.94
94 95 6.381481 TTTCTGCATGCATGTAATTAGGAG 57.619 37.500 26.79 10.48 0.00 3.69
95 96 5.294734 TCTGCATGCATGTAATTAGGAGA 57.705 39.130 26.79 12.63 0.00 3.71
96 97 5.303165 TCTGCATGCATGTAATTAGGAGAG 58.697 41.667 26.79 8.35 0.00 3.20
97 98 5.070847 TCTGCATGCATGTAATTAGGAGAGA 59.929 40.000 26.79 10.50 0.00 3.10
98 99 5.059161 TGCATGCATGTAATTAGGAGAGAC 58.941 41.667 26.79 6.41 0.00 3.36
99 100 5.163269 TGCATGCATGTAATTAGGAGAGACT 60.163 40.000 26.79 0.00 0.00 3.24
100 101 6.041979 TGCATGCATGTAATTAGGAGAGACTA 59.958 38.462 26.79 0.00 0.00 2.59
101 102 6.931281 GCATGCATGTAATTAGGAGAGACTAA 59.069 38.462 26.79 0.00 37.35 2.24
102 103 7.605691 GCATGCATGTAATTAGGAGAGACTAAT 59.394 37.037 26.79 0.00 43.56 1.73
103 104 9.149225 CATGCATGTAATTAGGAGAGACTAATC 57.851 37.037 18.91 0.00 41.50 1.75
104 105 8.484214 TGCATGTAATTAGGAGAGACTAATCT 57.516 34.615 0.00 0.00 41.50 2.40
105 106 9.588096 TGCATGTAATTAGGAGAGACTAATCTA 57.412 33.333 0.00 0.00 41.50 1.98
113 114 9.941325 ATTAGGAGAGACTAATCTATTTGCATG 57.059 33.333 0.00 0.00 38.89 4.06
114 115 6.229733 AGGAGAGACTAATCTATTTGCATGC 58.770 40.000 11.82 11.82 34.34 4.06
115 116 5.994054 GGAGAGACTAATCTATTTGCATGCA 59.006 40.000 18.46 18.46 34.34 3.96
116 117 6.654161 GGAGAGACTAATCTATTTGCATGCAT 59.346 38.462 23.37 10.46 34.34 3.96
117 118 7.821359 GGAGAGACTAATCTATTTGCATGCATA 59.179 37.037 23.37 18.04 34.34 3.14
118 119 8.545229 AGAGACTAATCTATTTGCATGCATAC 57.455 34.615 23.37 1.35 34.34 2.39
119 120 8.152898 AGAGACTAATCTATTTGCATGCATACA 58.847 33.333 23.37 4.83 34.34 2.29
120 121 8.859236 AGACTAATCTATTTGCATGCATACAT 57.141 30.769 23.37 15.96 32.16 2.29
121 122 9.948964 AGACTAATCTATTTGCATGCATACATA 57.051 29.630 23.37 16.22 31.19 2.29
122 123 9.979270 GACTAATCTATTTGCATGCATACATAC 57.021 33.333 23.37 1.84 33.67 2.39
123 124 9.506018 ACTAATCTATTTGCATGCATACATACA 57.494 29.630 23.37 0.58 33.67 2.29
126 127 9.634163 AATCTATTTGCATGCATACATACAATG 57.366 29.630 23.37 10.64 38.91 2.82
127 128 7.595604 TCTATTTGCATGCATACATACAATGG 58.404 34.615 23.37 17.11 38.91 3.16
128 129 5.595257 TTTGCATGCATACATACAATGGT 57.405 34.783 23.37 0.00 38.91 3.55
129 130 4.571372 TGCATGCATACATACAATGGTG 57.429 40.909 18.46 0.00 33.67 4.17
130 131 3.952967 TGCATGCATACATACAATGGTGT 59.047 39.130 18.46 0.00 42.09 4.16
131 132 5.128919 TGCATGCATACATACAATGGTGTA 58.871 37.500 18.46 3.84 44.29 2.90
132 133 5.591877 TGCATGCATACATACAATGGTGTAA 59.408 36.000 18.46 0.00 43.41 2.41
133 134 6.096001 TGCATGCATACATACAATGGTGTAAA 59.904 34.615 18.46 0.00 43.41 2.01
134 135 6.638063 GCATGCATACATACAATGGTGTAAAG 59.362 38.462 14.21 3.48 43.41 1.85
135 136 7.681782 GCATGCATACATACAATGGTGTAAAGT 60.682 37.037 14.21 0.00 43.41 2.66
136 137 7.082700 TGCATACATACAATGGTGTAAAGTG 57.917 36.000 5.18 2.02 43.41 3.16
137 138 6.657117 TGCATACATACAATGGTGTAAAGTGT 59.343 34.615 5.18 2.75 43.41 3.55
138 139 6.966632 GCATACATACAATGGTGTAAAGTGTG 59.033 38.462 5.18 11.60 43.41 3.82
139 140 5.371115 ACATACAATGGTGTAAAGTGTGC 57.629 39.130 0.00 0.00 43.41 4.57
140 141 5.070001 ACATACAATGGTGTAAAGTGTGCT 58.930 37.500 0.00 0.00 43.41 4.40
141 142 3.988379 ACAATGGTGTAAAGTGTGCTG 57.012 42.857 0.00 0.00 35.72 4.41
142 143 2.034558 ACAATGGTGTAAAGTGTGCTGC 59.965 45.455 0.00 0.00 35.72 5.25
143 144 0.874390 ATGGTGTAAAGTGTGCTGCG 59.126 50.000 0.00 0.00 0.00 5.18
144 145 1.163420 TGGTGTAAAGTGTGCTGCGG 61.163 55.000 0.00 0.00 0.00 5.69
145 146 1.082104 GTGTAAAGTGTGCTGCGGC 60.082 57.895 11.65 11.65 39.26 6.53
146 147 1.227823 TGTAAAGTGTGCTGCGGCT 60.228 52.632 20.27 0.00 39.59 5.52
147 148 0.817634 TGTAAAGTGTGCTGCGGCTT 60.818 50.000 20.27 6.63 39.59 4.35
148 149 0.385974 GTAAAGTGTGCTGCGGCTTG 60.386 55.000 20.27 0.00 39.59 4.01
149 150 0.817634 TAAAGTGTGCTGCGGCTTGT 60.818 50.000 20.27 0.00 39.59 3.16
150 151 1.666209 AAAGTGTGCTGCGGCTTGTT 61.666 50.000 20.27 4.14 39.59 2.83
151 152 1.666209 AAGTGTGCTGCGGCTTGTTT 61.666 50.000 20.27 5.62 39.59 2.83
152 153 1.658409 GTGTGCTGCGGCTTGTTTC 60.658 57.895 20.27 3.10 39.59 2.78
153 154 2.050077 GTGCTGCGGCTTGTTTCC 60.050 61.111 20.27 0.00 39.59 3.13
154 155 3.294493 TGCTGCGGCTTGTTTCCC 61.294 61.111 20.27 0.00 39.59 3.97
155 156 4.056125 GCTGCGGCTTGTTTCCCC 62.056 66.667 11.21 0.00 35.22 4.81
156 157 3.737172 CTGCGGCTTGTTTCCCCG 61.737 66.667 0.00 0.00 44.58 5.73
159 160 4.338710 CGGCTTGTTTCCCCGGGA 62.339 66.667 26.32 0.34 38.42 5.14
160 161 2.361230 GGCTTGTTTCCCCGGGAG 60.361 66.667 26.32 11.74 31.21 4.30
161 162 2.754375 GCTTGTTTCCCCGGGAGA 59.246 61.111 26.32 15.50 31.21 3.71
162 163 1.074248 GCTTGTTTCCCCGGGAGAA 59.926 57.895 26.32 20.90 31.21 2.87
163 164 0.538746 GCTTGTTTCCCCGGGAGAAA 60.539 55.000 26.32 25.36 31.21 2.52
164 165 1.891011 GCTTGTTTCCCCGGGAGAAAT 60.891 52.381 28.71 0.00 35.77 2.17
165 166 1.818674 CTTGTTTCCCCGGGAGAAATG 59.181 52.381 28.71 20.76 35.77 2.32
166 167 0.774908 TGTTTCCCCGGGAGAAATGT 59.225 50.000 28.71 0.00 35.77 2.71
167 168 1.173913 GTTTCCCCGGGAGAAATGTG 58.826 55.000 28.71 10.80 35.77 3.21
168 169 1.068948 TTTCCCCGGGAGAAATGTGA 58.931 50.000 26.32 4.56 31.21 3.58
169 170 0.618458 TTCCCCGGGAGAAATGTGAG 59.382 55.000 26.32 0.00 31.21 3.51
170 171 0.252513 TCCCCGGGAGAAATGTGAGA 60.253 55.000 26.32 2.75 0.00 3.27
171 172 0.618458 CCCCGGGAGAAATGTGAGAA 59.382 55.000 26.32 0.00 0.00 2.87
172 173 1.407437 CCCCGGGAGAAATGTGAGAAG 60.407 57.143 26.32 0.00 0.00 2.85
173 174 1.407437 CCCGGGAGAAATGTGAGAAGG 60.407 57.143 18.48 0.00 0.00 3.46
174 175 1.555075 CCGGGAGAAATGTGAGAAGGA 59.445 52.381 0.00 0.00 0.00 3.36
175 176 2.171448 CCGGGAGAAATGTGAGAAGGAT 59.829 50.000 0.00 0.00 0.00 3.24
176 177 3.462021 CGGGAGAAATGTGAGAAGGATC 58.538 50.000 0.00 0.00 0.00 3.36
177 178 3.462021 GGGAGAAATGTGAGAAGGATCG 58.538 50.000 0.00 0.00 0.00 3.69
178 179 3.118592 GGGAGAAATGTGAGAAGGATCGT 60.119 47.826 0.00 0.00 0.00 3.73
179 180 4.508662 GGAGAAATGTGAGAAGGATCGTT 58.491 43.478 0.00 0.00 0.00 3.85
180 181 4.568760 GGAGAAATGTGAGAAGGATCGTTC 59.431 45.833 18.31 18.31 0.00 3.95
181 182 4.177026 AGAAATGTGAGAAGGATCGTTCG 58.823 43.478 19.46 0.00 0.00 3.95
182 183 2.586258 ATGTGAGAAGGATCGTTCGG 57.414 50.000 19.46 0.00 0.00 4.30
183 184 1.541379 TGTGAGAAGGATCGTTCGGA 58.459 50.000 19.46 9.54 0.00 4.55
184 185 1.201647 TGTGAGAAGGATCGTTCGGAC 59.798 52.381 19.46 18.78 0.00 4.79
185 186 0.815734 TGAGAAGGATCGTTCGGACC 59.184 55.000 19.46 12.04 0.00 4.46
186 187 1.104630 GAGAAGGATCGTTCGGACCT 58.895 55.000 19.46 4.79 0.00 3.85
187 188 2.295885 GAGAAGGATCGTTCGGACCTA 58.704 52.381 19.46 0.00 32.06 3.08
188 189 2.885894 GAGAAGGATCGTTCGGACCTAT 59.114 50.000 19.46 3.48 32.06 2.57
189 190 2.885894 AGAAGGATCGTTCGGACCTATC 59.114 50.000 19.46 0.00 32.06 2.08
190 191 2.660670 AGGATCGTTCGGACCTATCT 57.339 50.000 4.34 0.00 0.00 1.98
191 192 3.784511 AGGATCGTTCGGACCTATCTA 57.215 47.619 4.34 0.00 0.00 1.98
192 193 4.096190 AGGATCGTTCGGACCTATCTAA 57.904 45.455 4.34 0.00 0.00 2.10
193 194 4.664392 AGGATCGTTCGGACCTATCTAAT 58.336 43.478 4.34 0.00 0.00 1.73
194 195 5.813383 AGGATCGTTCGGACCTATCTAATA 58.187 41.667 4.34 0.00 0.00 0.98
195 196 5.881443 AGGATCGTTCGGACCTATCTAATAG 59.119 44.000 4.34 0.00 0.00 1.73
205 206 4.500603 CCTATCTAATAGGCACGAACGT 57.499 45.455 0.22 0.00 45.36 3.99
206 207 4.868067 CCTATCTAATAGGCACGAACGTT 58.132 43.478 0.00 0.00 45.36 3.99
207 208 4.916249 CCTATCTAATAGGCACGAACGTTC 59.084 45.833 18.47 18.47 45.36 3.95
208 209 3.853831 TCTAATAGGCACGAACGTTCA 57.146 42.857 26.71 7.63 0.00 3.18
209 210 3.766151 TCTAATAGGCACGAACGTTCAG 58.234 45.455 26.71 20.47 0.00 3.02
210 211 2.736144 AATAGGCACGAACGTTCAGA 57.264 45.000 26.71 6.22 0.00 3.27
211 212 2.736144 ATAGGCACGAACGTTCAGAA 57.264 45.000 26.71 7.10 0.00 3.02
212 213 2.736144 TAGGCACGAACGTTCAGAAT 57.264 45.000 26.71 11.34 0.00 2.40
213 214 2.736144 AGGCACGAACGTTCAGAATA 57.264 45.000 26.71 0.00 0.00 1.75
214 215 3.247006 AGGCACGAACGTTCAGAATAT 57.753 42.857 26.71 6.14 0.00 1.28
215 216 4.380841 AGGCACGAACGTTCAGAATATA 57.619 40.909 26.71 0.00 0.00 0.86
216 217 4.945246 AGGCACGAACGTTCAGAATATAT 58.055 39.130 26.71 3.12 0.00 0.86
217 218 4.982916 AGGCACGAACGTTCAGAATATATC 59.017 41.667 26.71 7.03 0.00 1.63
218 219 4.143597 GGCACGAACGTTCAGAATATATCG 60.144 45.833 26.71 12.68 35.36 2.92
219 220 4.660907 GCACGAACGTTCAGAATATATCGC 60.661 45.833 26.71 9.97 32.68 4.58
220 221 3.662645 ACGAACGTTCAGAATATATCGCG 59.337 43.478 26.71 11.72 32.68 5.87
221 222 3.057739 CGAACGTTCAGAATATATCGCGG 59.942 47.826 26.71 2.64 0.00 6.46
222 223 3.637998 ACGTTCAGAATATATCGCGGT 57.362 42.857 6.13 0.00 0.00 5.68
223 224 3.562505 ACGTTCAGAATATATCGCGGTC 58.437 45.455 6.13 0.00 0.00 4.79
224 225 2.915463 CGTTCAGAATATATCGCGGTCC 59.085 50.000 6.13 0.00 0.00 4.46
225 226 3.366070 CGTTCAGAATATATCGCGGTCCT 60.366 47.826 6.13 0.00 0.00 3.85
226 227 4.557205 GTTCAGAATATATCGCGGTCCTT 58.443 43.478 6.13 0.00 0.00 3.36
227 228 4.436242 TCAGAATATATCGCGGTCCTTC 57.564 45.455 6.13 3.18 0.00 3.46
228 229 3.824443 TCAGAATATATCGCGGTCCTTCA 59.176 43.478 6.13 0.00 0.00 3.02
229 230 4.082733 TCAGAATATATCGCGGTCCTTCAG 60.083 45.833 6.13 0.41 0.00 3.02
230 231 4.079970 AGAATATATCGCGGTCCTTCAGA 58.920 43.478 6.13 0.00 0.00 3.27
231 232 4.523173 AGAATATATCGCGGTCCTTCAGAA 59.477 41.667 6.13 0.00 0.00 3.02
232 233 4.866508 ATATATCGCGGTCCTTCAGAAA 57.133 40.909 6.13 0.00 0.00 2.52
233 234 3.536956 ATATCGCGGTCCTTCAGAAAA 57.463 42.857 6.13 0.00 0.00 2.29
234 235 2.403252 ATCGCGGTCCTTCAGAAAAT 57.597 45.000 6.13 0.00 0.00 1.82
235 236 1.722011 TCGCGGTCCTTCAGAAAATC 58.278 50.000 6.13 0.00 0.00 2.17
236 237 1.275291 TCGCGGTCCTTCAGAAAATCT 59.725 47.619 6.13 0.00 0.00 2.40
237 238 2.494471 TCGCGGTCCTTCAGAAAATCTA 59.506 45.455 6.13 0.00 0.00 1.98
238 239 3.132289 TCGCGGTCCTTCAGAAAATCTAT 59.868 43.478 6.13 0.00 0.00 1.98
239 240 4.340097 TCGCGGTCCTTCAGAAAATCTATA 59.660 41.667 6.13 0.00 0.00 1.31
240 241 4.444720 CGCGGTCCTTCAGAAAATCTATAC 59.555 45.833 0.00 0.00 0.00 1.47
241 242 4.444720 GCGGTCCTTCAGAAAATCTATACG 59.555 45.833 0.00 0.00 0.00 3.06
242 243 4.444720 CGGTCCTTCAGAAAATCTATACGC 59.555 45.833 0.00 0.00 0.00 4.42
243 244 5.602628 GGTCCTTCAGAAAATCTATACGCT 58.397 41.667 0.00 0.00 0.00 5.07
244 245 5.463724 GGTCCTTCAGAAAATCTATACGCTG 59.536 44.000 0.00 0.00 0.00 5.18
245 246 6.043411 GTCCTTCAGAAAATCTATACGCTGT 58.957 40.000 0.00 0.00 0.00 4.40
246 247 6.199342 GTCCTTCAGAAAATCTATACGCTGTC 59.801 42.308 0.00 0.00 0.00 3.51
247 248 6.096987 TCCTTCAGAAAATCTATACGCTGTCT 59.903 38.462 0.00 0.00 0.00 3.41
248 249 6.419413 CCTTCAGAAAATCTATACGCTGTCTC 59.581 42.308 0.00 0.00 0.00 3.36
249 250 6.701145 TCAGAAAATCTATACGCTGTCTCT 57.299 37.500 0.00 0.00 0.00 3.10
250 251 6.499172 TCAGAAAATCTATACGCTGTCTCTG 58.501 40.000 0.00 0.00 0.00 3.35
251 252 6.095580 TCAGAAAATCTATACGCTGTCTCTGT 59.904 38.462 0.00 0.00 0.00 3.41
252 253 7.282450 TCAGAAAATCTATACGCTGTCTCTGTA 59.718 37.037 0.00 0.00 0.00 2.74
253 254 7.915923 CAGAAAATCTATACGCTGTCTCTGTAA 59.084 37.037 0.00 0.00 0.00 2.41
254 255 8.634444 AGAAAATCTATACGCTGTCTCTGTAAT 58.366 33.333 0.00 0.00 0.00 1.89
255 256 9.250624 GAAAATCTATACGCTGTCTCTGTAATT 57.749 33.333 0.00 0.00 0.00 1.40
256 257 8.804688 AAATCTATACGCTGTCTCTGTAATTC 57.195 34.615 0.00 0.00 0.00 2.17
257 258 6.937436 TCTATACGCTGTCTCTGTAATTCA 57.063 37.500 0.00 0.00 0.00 2.57
258 259 6.960468 TCTATACGCTGTCTCTGTAATTCAG 58.040 40.000 0.00 0.00 44.85 3.02
273 274 8.975410 CTGTAATTCAGAAATTGATTGCTTCA 57.025 30.769 0.00 0.00 46.27 3.02
274 275 9.582431 CTGTAATTCAGAAATTGATTGCTTCAT 57.418 29.630 0.00 0.00 46.27 2.57
275 276 9.932207 TGTAATTCAGAAATTGATTGCTTCATT 57.068 25.926 0.00 0.00 35.84 2.57
278 279 9.667107 AATTCAGAAATTGATTGCTTCATTCAT 57.333 25.926 0.00 0.00 35.27 2.57
279 280 8.474006 TTCAGAAATTGATTGCTTCATTCATG 57.526 30.769 0.00 0.00 35.27 3.07
280 281 6.533723 TCAGAAATTGATTGCTTCATTCATGC 59.466 34.615 0.00 0.00 33.34 4.06
281 282 6.312672 CAGAAATTGATTGCTTCATTCATGCA 59.687 34.615 0.00 0.00 33.34 3.96
282 283 6.312918 AGAAATTGATTGCTTCATTCATGCAC 59.687 34.615 0.00 0.00 34.96 4.57
283 284 4.794278 TTGATTGCTTCATTCATGCACT 57.206 36.364 0.00 0.00 34.96 4.40
284 285 5.900865 TTGATTGCTTCATTCATGCACTA 57.099 34.783 0.00 0.00 34.96 2.74
285 286 5.239359 TGATTGCTTCATTCATGCACTAC 57.761 39.130 0.00 0.00 34.96 2.73
286 287 4.945543 TGATTGCTTCATTCATGCACTACT 59.054 37.500 0.00 0.00 34.96 2.57
287 288 4.690184 TTGCTTCATTCATGCACTACTG 57.310 40.909 0.00 0.00 34.96 2.74
288 289 2.421073 TGCTTCATTCATGCACTACTGC 59.579 45.455 0.00 0.00 44.52 4.40
289 290 2.681848 GCTTCATTCATGCACTACTGCT 59.318 45.455 0.00 0.00 44.57 4.24
290 291 3.873361 GCTTCATTCATGCACTACTGCTA 59.127 43.478 0.00 0.00 44.57 3.49
291 292 4.514441 GCTTCATTCATGCACTACTGCTAT 59.486 41.667 0.00 0.00 44.57 2.97
292 293 5.008415 GCTTCATTCATGCACTACTGCTATT 59.992 40.000 0.00 0.00 44.57 1.73
293 294 6.459298 GCTTCATTCATGCACTACTGCTATTT 60.459 38.462 0.00 0.00 44.57 1.40
294 295 7.395190 TTCATTCATGCACTACTGCTATTTT 57.605 32.000 0.00 0.00 44.57 1.82
295 296 8.504812 TTCATTCATGCACTACTGCTATTTTA 57.495 30.769 0.00 0.00 44.57 1.52
296 297 8.681486 TCATTCATGCACTACTGCTATTTTAT 57.319 30.769 0.00 0.00 44.57 1.40
297 298 9.777297 TCATTCATGCACTACTGCTATTTTATA 57.223 29.630 0.00 0.00 44.57 0.98
303 304 9.658799 ATGCACTACTGCTATTTTATATACAGG 57.341 33.333 0.00 0.00 44.57 4.00
304 305 8.094548 TGCACTACTGCTATTTTATATACAGGG 58.905 37.037 0.00 0.00 44.57 4.45
305 306 7.549488 GCACTACTGCTATTTTATATACAGGGG 59.451 40.741 0.00 0.00 40.63 4.79
306 307 8.812972 CACTACTGCTATTTTATATACAGGGGA 58.187 37.037 0.00 0.00 0.00 4.81
307 308 9.562226 ACTACTGCTATTTTATATACAGGGGAT 57.438 33.333 0.00 0.00 0.00 3.85
309 310 8.449423 ACTGCTATTTTATATACAGGGGATCA 57.551 34.615 0.00 0.00 0.00 2.92
310 311 8.543774 ACTGCTATTTTATATACAGGGGATCAG 58.456 37.037 0.00 0.00 0.00 2.90
311 312 7.861629 TGCTATTTTATATACAGGGGATCAGG 58.138 38.462 0.00 0.00 0.00 3.86
312 313 7.092444 TGCTATTTTATATACAGGGGATCAGGG 60.092 40.741 0.00 0.00 0.00 4.45
313 314 7.127339 GCTATTTTATATACAGGGGATCAGGGA 59.873 40.741 0.00 0.00 0.00 4.20
314 315 6.952605 TTTTATATACAGGGGATCAGGGAG 57.047 41.667 0.00 0.00 0.00 4.30
315 316 3.498614 ATATACAGGGGATCAGGGAGG 57.501 52.381 0.00 0.00 0.00 4.30
316 317 1.255033 ATACAGGGGATCAGGGAGGA 58.745 55.000 0.00 0.00 0.00 3.71
317 318 0.563173 TACAGGGGATCAGGGAGGAG 59.437 60.000 0.00 0.00 0.00 3.69
318 319 1.231751 ACAGGGGATCAGGGAGGAGA 61.232 60.000 0.00 0.00 0.00 3.71
319 320 0.471591 CAGGGGATCAGGGAGGAGAG 60.472 65.000 0.00 0.00 0.00 3.20
320 321 1.841103 GGGGATCAGGGAGGAGAGC 60.841 68.421 0.00 0.00 0.00 4.09
321 322 1.074926 GGGATCAGGGAGGAGAGCA 60.075 63.158 0.00 0.00 0.00 4.26
322 323 1.120795 GGGATCAGGGAGGAGAGCAG 61.121 65.000 0.00 0.00 0.00 4.24
323 324 0.398381 GGATCAGGGAGGAGAGCAGT 60.398 60.000 0.00 0.00 0.00 4.40
324 325 1.133325 GGATCAGGGAGGAGAGCAGTA 60.133 57.143 0.00 0.00 0.00 2.74
325 326 2.238521 GATCAGGGAGGAGAGCAGTAG 58.761 57.143 0.00 0.00 0.00 2.57
326 327 0.396417 TCAGGGAGGAGAGCAGTAGC 60.396 60.000 0.00 0.00 42.56 3.58
327 328 1.075600 AGGGAGGAGAGCAGTAGCC 60.076 63.158 0.00 0.00 43.56 3.93
328 329 1.075600 GGGAGGAGAGCAGTAGCCT 60.076 63.158 0.00 0.00 43.56 4.58
329 330 1.398958 GGGAGGAGAGCAGTAGCCTG 61.399 65.000 0.00 0.00 43.56 4.85
342 343 3.360340 GCCTGCTGCTGCGAGTTT 61.360 61.111 11.21 0.00 43.34 2.66
343 344 2.559840 CCTGCTGCTGCGAGTTTG 59.440 61.111 11.21 0.00 43.34 2.93
344 345 2.256591 CCTGCTGCTGCGAGTTTGT 61.257 57.895 11.21 0.00 43.34 2.83
345 346 1.650912 CTGCTGCTGCGAGTTTGTT 59.349 52.632 11.21 0.00 43.34 2.83
346 347 0.385223 CTGCTGCTGCGAGTTTGTTC 60.385 55.000 11.21 0.00 43.34 3.18
347 348 1.094650 TGCTGCTGCGAGTTTGTTCA 61.095 50.000 11.21 0.00 43.34 3.18
348 349 0.239347 GCTGCTGCGAGTTTGTTCAT 59.761 50.000 0.00 0.00 0.00 2.57
349 350 1.959747 CTGCTGCGAGTTTGTTCATG 58.040 50.000 0.00 0.00 0.00 3.07
350 351 0.040157 TGCTGCGAGTTTGTTCATGC 60.040 50.000 0.00 0.00 0.00 4.06
351 352 0.239347 GCTGCGAGTTTGTTCATGCT 59.761 50.000 0.00 0.00 0.00 3.79
352 353 1.959747 CTGCGAGTTTGTTCATGCTG 58.040 50.000 0.00 0.00 0.00 4.41
353 354 0.040157 TGCGAGTTTGTTCATGCTGC 60.040 50.000 0.00 0.00 0.00 5.25
354 355 0.239347 GCGAGTTTGTTCATGCTGCT 59.761 50.000 0.00 0.00 0.00 4.24
355 356 1.335324 GCGAGTTTGTTCATGCTGCTT 60.335 47.619 0.00 0.00 0.00 3.91
356 357 2.578495 CGAGTTTGTTCATGCTGCTTC 58.422 47.619 0.00 0.00 0.00 3.86
357 358 2.225019 CGAGTTTGTTCATGCTGCTTCT 59.775 45.455 0.00 0.00 0.00 2.85
358 359 3.304257 CGAGTTTGTTCATGCTGCTTCTT 60.304 43.478 0.00 0.00 0.00 2.52
359 360 3.973657 AGTTTGTTCATGCTGCTTCTTG 58.026 40.909 0.00 0.00 0.00 3.02
360 361 3.054878 GTTTGTTCATGCTGCTTCTTGG 58.945 45.455 0.00 0.00 0.00 3.61
361 362 1.985473 TGTTCATGCTGCTTCTTGGT 58.015 45.000 0.00 0.00 0.00 3.67
362 363 2.309613 TGTTCATGCTGCTTCTTGGTT 58.690 42.857 0.00 0.00 0.00 3.67
363 364 3.485394 TGTTCATGCTGCTTCTTGGTTA 58.515 40.909 0.00 0.00 0.00 2.85
364 365 3.253188 TGTTCATGCTGCTTCTTGGTTAC 59.747 43.478 0.00 0.00 0.00 2.50
365 366 3.423539 TCATGCTGCTTCTTGGTTACT 57.576 42.857 0.00 0.00 0.00 2.24
366 367 4.551702 TCATGCTGCTTCTTGGTTACTA 57.448 40.909 0.00 0.00 0.00 1.82
367 368 4.253685 TCATGCTGCTTCTTGGTTACTAC 58.746 43.478 0.00 0.00 0.00 2.73
368 369 4.020218 TCATGCTGCTTCTTGGTTACTACT 60.020 41.667 0.00 0.00 0.00 2.57
369 370 3.926616 TGCTGCTTCTTGGTTACTACTC 58.073 45.455 0.00 0.00 0.00 2.59
370 371 3.263261 GCTGCTTCTTGGTTACTACTCC 58.737 50.000 0.00 0.00 0.00 3.85
371 372 3.863041 CTGCTTCTTGGTTACTACTCCC 58.137 50.000 0.00 0.00 0.00 4.30
372 373 3.515901 CTGCTTCTTGGTTACTACTCCCT 59.484 47.826 0.00 0.00 0.00 4.20
373 374 3.514309 TGCTTCTTGGTTACTACTCCCTC 59.486 47.826 0.00 0.00 0.00 4.30
374 375 3.770388 GCTTCTTGGTTACTACTCCCTCT 59.230 47.826 0.00 0.00 0.00 3.69
375 376 4.382147 GCTTCTTGGTTACTACTCCCTCTG 60.382 50.000 0.00 0.00 0.00 3.35
376 377 4.399483 TCTTGGTTACTACTCCCTCTGT 57.601 45.455 0.00 0.00 0.00 3.41
377 378 4.748701 TCTTGGTTACTACTCCCTCTGTT 58.251 43.478 0.00 0.00 0.00 3.16
378 379 4.527038 TCTTGGTTACTACTCCCTCTGTTG 59.473 45.833 0.00 0.00 0.00 3.33
379 380 4.122337 TGGTTACTACTCCCTCTGTTGA 57.878 45.455 0.00 0.00 0.00 3.18
380 381 3.830755 TGGTTACTACTCCCTCTGTTGAC 59.169 47.826 0.00 0.00 0.00 3.18
381 382 3.195182 GGTTACTACTCCCTCTGTTGACC 59.805 52.174 0.00 0.00 0.00 4.02
382 383 2.696526 ACTACTCCCTCTGTTGACCA 57.303 50.000 0.00 0.00 0.00 4.02
383 384 2.530701 ACTACTCCCTCTGTTGACCAG 58.469 52.381 0.00 0.00 42.97 4.00
384 385 1.827969 CTACTCCCTCTGTTGACCAGG 59.172 57.143 0.00 0.00 41.83 4.45
388 389 2.765352 CCTCTGTTGACCAGGGAGT 58.235 57.895 0.00 0.00 45.27 3.85
389 390 1.938585 CCTCTGTTGACCAGGGAGTA 58.061 55.000 0.00 0.00 45.27 2.59
390 391 1.550976 CCTCTGTTGACCAGGGAGTAC 59.449 57.143 0.00 0.00 45.27 2.73
391 392 2.530701 CTCTGTTGACCAGGGAGTACT 58.469 52.381 0.00 0.00 45.27 2.73
392 393 3.563697 CCTCTGTTGACCAGGGAGTACTA 60.564 52.174 0.00 0.00 45.27 1.82
393 394 3.428532 TCTGTTGACCAGGGAGTACTAC 58.571 50.000 0.00 0.00 41.83 2.73
394 395 3.162666 CTGTTGACCAGGGAGTACTACA 58.837 50.000 7.57 0.00 37.54 2.74
395 396 2.895404 TGTTGACCAGGGAGTACTACAC 59.105 50.000 7.57 0.00 0.00 2.90
396 397 2.895404 GTTGACCAGGGAGTACTACACA 59.105 50.000 7.57 0.00 0.00 3.72
397 398 3.468071 TGACCAGGGAGTACTACACAT 57.532 47.619 7.57 0.00 0.00 3.21
398 399 3.362706 TGACCAGGGAGTACTACACATC 58.637 50.000 7.57 0.00 0.00 3.06
399 400 3.011369 TGACCAGGGAGTACTACACATCT 59.989 47.826 7.57 0.00 0.00 2.90
400 401 4.228895 TGACCAGGGAGTACTACACATCTA 59.771 45.833 7.57 0.00 0.00 1.98
401 402 5.103643 TGACCAGGGAGTACTACACATCTAT 60.104 44.000 7.57 0.00 0.00 1.98
402 403 6.102174 TGACCAGGGAGTACTACACATCTATA 59.898 42.308 7.57 0.00 0.00 1.31
403 404 6.305411 ACCAGGGAGTACTACACATCTATAC 58.695 44.000 7.57 0.00 0.00 1.47
404 405 6.126273 ACCAGGGAGTACTACACATCTATACA 60.126 42.308 7.57 0.00 0.00 2.29
405 406 6.431543 CCAGGGAGTACTACACATCTATACAG 59.568 46.154 7.57 0.00 0.00 2.74
406 407 7.225011 CAGGGAGTACTACACATCTATACAGA 58.775 42.308 7.57 0.00 34.56 3.41
407 408 7.389330 CAGGGAGTACTACACATCTATACAGAG 59.611 44.444 7.57 0.00 33.22 3.35
408 409 7.292827 AGGGAGTACTACACATCTATACAGAGA 59.707 40.741 7.57 0.00 33.22 3.10
409 410 7.937942 GGGAGTACTACACATCTATACAGAGAA 59.062 40.741 7.57 0.00 33.22 2.87
410 411 8.776470 GGAGTACTACACATCTATACAGAGAAC 58.224 40.741 0.00 0.00 33.22 3.01
411 412 9.327628 GAGTACTACACATCTATACAGAGAACA 57.672 37.037 0.00 0.00 33.22 3.18
412 413 9.111613 AGTACTACACATCTATACAGAGAACAC 57.888 37.037 0.00 0.00 33.22 3.32
413 414 7.939784 ACTACACATCTATACAGAGAACACA 57.060 36.000 0.00 0.00 33.22 3.72
414 415 8.349568 ACTACACATCTATACAGAGAACACAA 57.650 34.615 0.00 0.00 33.22 3.33
415 416 8.803235 ACTACACATCTATACAGAGAACACAAA 58.197 33.333 0.00 0.00 33.22 2.83
416 417 9.295214 CTACACATCTATACAGAGAACACAAAG 57.705 37.037 0.00 0.00 33.22 2.77
417 418 7.896811 ACACATCTATACAGAGAACACAAAGA 58.103 34.615 0.00 0.00 33.22 2.52
418 419 8.367911 ACACATCTATACAGAGAACACAAAGAA 58.632 33.333 0.00 0.00 33.22 2.52
419 420 8.651588 CACATCTATACAGAGAACACAAAGAAC 58.348 37.037 0.00 0.00 33.22 3.01
420 421 8.367911 ACATCTATACAGAGAACACAAAGAACA 58.632 33.333 0.00 0.00 33.22 3.18
421 422 8.867935 CATCTATACAGAGAACACAAAGAACAG 58.132 37.037 0.00 0.00 33.22 3.16
422 423 8.178313 TCTATACAGAGAACACAAAGAACAGA 57.822 34.615 0.00 0.00 0.00 3.41
423 424 8.638873 TCTATACAGAGAACACAAAGAACAGAA 58.361 33.333 0.00 0.00 0.00 3.02
424 425 7.721286 ATACAGAGAACACAAAGAACAGAAG 57.279 36.000 0.00 0.00 0.00 2.85
425 426 4.878397 ACAGAGAACACAAAGAACAGAAGG 59.122 41.667 0.00 0.00 0.00 3.46
426 427 3.879892 AGAGAACACAAAGAACAGAAGGC 59.120 43.478 0.00 0.00 0.00 4.35
427 428 3.879892 GAGAACACAAAGAACAGAAGGCT 59.120 43.478 0.00 0.00 0.00 4.58
429 430 3.281727 ACACAAAGAACAGAAGGCTGA 57.718 42.857 0.00 0.00 45.17 4.26
430 431 3.825328 ACACAAAGAACAGAAGGCTGAT 58.175 40.909 0.00 0.00 45.17 2.90
431 432 3.567164 ACACAAAGAACAGAAGGCTGATG 59.433 43.478 0.00 0.00 45.17 3.07
432 433 2.555757 ACAAAGAACAGAAGGCTGATGC 59.444 45.455 0.00 0.00 45.17 3.91
433 434 2.818432 CAAAGAACAGAAGGCTGATGCT 59.182 45.455 0.00 0.00 45.17 3.79
434 435 2.875094 AGAACAGAAGGCTGATGCTT 57.125 45.000 0.00 0.00 45.17 3.91
435 436 2.434428 AGAACAGAAGGCTGATGCTTG 58.566 47.619 0.00 0.00 45.17 4.01
436 437 0.886563 AACAGAAGGCTGATGCTTGC 59.113 50.000 0.00 0.00 45.17 4.01
437 438 0.037877 ACAGAAGGCTGATGCTTGCT 59.962 50.000 0.00 0.00 45.17 3.91
438 439 0.452184 CAGAAGGCTGATGCTTGCTG 59.548 55.000 0.00 0.00 43.98 4.41
439 440 1.139095 GAAGGCTGATGCTTGCTGC 59.861 57.895 0.00 0.00 43.25 5.25
440 441 1.304217 AAGGCTGATGCTTGCTGCT 60.304 52.632 0.00 0.00 43.37 4.24
441 442 0.898789 AAGGCTGATGCTTGCTGCTT 60.899 50.000 0.00 0.00 43.37 3.91
442 443 0.898789 AGGCTGATGCTTGCTGCTTT 60.899 50.000 0.00 0.00 43.37 3.51
443 444 0.458025 GGCTGATGCTTGCTGCTTTC 60.458 55.000 0.00 2.59 43.37 2.62
444 445 0.242825 GCTGATGCTTGCTGCTTTCA 59.757 50.000 0.00 0.00 43.37 2.69
445 446 1.336517 GCTGATGCTTGCTGCTTTCAA 60.337 47.619 0.00 0.00 43.37 2.69
446 447 2.596452 CTGATGCTTGCTGCTTTCAAG 58.404 47.619 0.00 8.23 42.72 3.02
458 459 3.879932 GCTTTCAAGCGGATACATACC 57.120 47.619 0.00 0.00 42.88 2.73
459 460 3.467803 GCTTTCAAGCGGATACATACCT 58.532 45.455 0.00 0.00 42.88 3.08
528 529 0.246910 GGTCCCAGAAGTCGAGAACC 59.753 60.000 0.00 0.00 0.00 3.62
602 604 3.075005 GACGCCCAGTCCTGCCTA 61.075 66.667 0.00 0.00 43.95 3.93
612 614 0.737219 GTCCTGCCTATACACGTCGT 59.263 55.000 0.00 0.00 0.00 4.34
785 803 1.097547 CACCCGCAATCCCTAGCTTG 61.098 60.000 0.00 0.00 0.00 4.01
985 1010 2.046892 GGAGCCGTGTCATGCTGT 60.047 61.111 4.71 0.00 38.11 4.40
1274 1299 0.179124 CAGCGCTGGGTAAGAGAGAC 60.179 60.000 29.88 0.00 0.00 3.36
1388 1431 1.153249 TGAAGGATTTAGGCGGCGG 60.153 57.895 9.78 0.00 0.00 6.13
2561 2606 2.943036 TCAACCACCCCTAAGTTCAC 57.057 50.000 0.00 0.00 0.00 3.18
2627 2672 2.634940 TGACTAGAGCTTGCTCCAGTTT 59.365 45.455 20.78 5.99 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.746245 TCAAAATGTTTTGTAGCTCAAACCG 59.254 36.000 15.51 0.00 45.77 4.44
1 2 7.532682 TTCAAAATGTTTTGTAGCTCAAACC 57.467 32.000 15.51 5.43 45.77 3.27
2 3 9.986833 AAATTCAAAATGTTTTGTAGCTCAAAC 57.013 25.926 15.51 9.15 45.77 2.93
5 6 9.376075 TGAAAATTCAAAATGTTTTGTAGCTCA 57.624 25.926 15.51 11.02 45.77 4.26
6 7 9.853921 CTGAAAATTCAAAATGTTTTGTAGCTC 57.146 29.630 15.51 9.24 45.77 4.09
7 8 9.382275 ACTGAAAATTCAAAATGTTTTGTAGCT 57.618 25.926 15.51 0.00 45.77 3.32
8 9 9.986833 AACTGAAAATTCAAAATGTTTTGTAGC 57.013 25.926 15.51 4.64 45.77 3.58
28 29 8.784043 GGTAGCAGAATCTTTTAAGAAACTGAA 58.216 33.333 21.79 12.46 40.89 3.02
29 30 7.936847 TGGTAGCAGAATCTTTTAAGAAACTGA 59.063 33.333 21.79 8.65 40.89 3.41
30 31 8.099364 TGGTAGCAGAATCTTTTAAGAAACTG 57.901 34.615 17.15 17.15 41.11 3.16
31 32 8.870075 ATGGTAGCAGAATCTTTTAAGAAACT 57.130 30.769 0.00 0.00 38.77 2.66
32 33 8.730680 TGATGGTAGCAGAATCTTTTAAGAAAC 58.269 33.333 0.00 0.00 38.77 2.78
33 34 8.862325 TGATGGTAGCAGAATCTTTTAAGAAA 57.138 30.769 0.00 0.00 38.77 2.52
34 35 9.113838 GATGATGGTAGCAGAATCTTTTAAGAA 57.886 33.333 0.00 0.00 38.77 2.52
35 36 8.267183 TGATGATGGTAGCAGAATCTTTTAAGA 58.733 33.333 16.27 0.00 39.78 2.10
36 37 8.442632 TGATGATGGTAGCAGAATCTTTTAAG 57.557 34.615 16.27 0.00 0.00 1.85
37 38 8.806429 TTGATGATGGTAGCAGAATCTTTTAA 57.194 30.769 16.27 4.56 0.00 1.52
38 39 8.985315 ATTGATGATGGTAGCAGAATCTTTTA 57.015 30.769 16.27 4.93 0.00 1.52
39 40 7.893124 ATTGATGATGGTAGCAGAATCTTTT 57.107 32.000 16.27 3.86 0.00 2.27
40 41 7.893124 AATTGATGATGGTAGCAGAATCTTT 57.107 32.000 16.27 9.89 0.00 2.52
41 42 7.893124 AAATTGATGATGGTAGCAGAATCTT 57.107 32.000 16.27 2.71 0.00 2.40
42 43 7.893124 AAAATTGATGATGGTAGCAGAATCT 57.107 32.000 16.27 0.00 0.00 2.40
69 70 7.122501 TCTCCTAATTACATGCATGCAGAAAAA 59.877 33.333 26.69 16.70 0.00 1.94
70 71 6.602803 TCTCCTAATTACATGCATGCAGAAAA 59.397 34.615 26.69 18.43 0.00 2.29
71 72 6.121590 TCTCCTAATTACATGCATGCAGAAA 58.878 36.000 26.69 18.78 0.00 2.52
72 73 5.683681 TCTCCTAATTACATGCATGCAGAA 58.316 37.500 26.69 19.01 0.00 3.02
73 74 5.070847 TCTCTCCTAATTACATGCATGCAGA 59.929 40.000 26.69 12.88 0.00 4.26
74 75 5.178996 GTCTCTCCTAATTACATGCATGCAG 59.821 44.000 26.69 19.15 0.00 4.41
75 76 5.059161 GTCTCTCCTAATTACATGCATGCA 58.941 41.667 26.53 25.04 0.00 3.96
76 77 5.303971 AGTCTCTCCTAATTACATGCATGC 58.696 41.667 26.53 11.82 0.00 4.06
77 78 9.149225 GATTAGTCTCTCCTAATTACATGCATG 57.851 37.037 25.09 25.09 37.67 4.06
78 79 9.099071 AGATTAGTCTCTCCTAATTACATGCAT 57.901 33.333 0.00 0.00 37.67 3.96
79 80 8.484214 AGATTAGTCTCTCCTAATTACATGCA 57.516 34.615 0.00 0.00 37.67 3.96
87 88 9.941325 CATGCAAATAGATTAGTCTCTCCTAAT 57.059 33.333 0.00 0.00 39.70 1.73
88 89 7.875041 GCATGCAAATAGATTAGTCTCTCCTAA 59.125 37.037 14.21 0.00 35.87 2.69
89 90 7.015584 TGCATGCAAATAGATTAGTCTCTCCTA 59.984 37.037 20.30 0.00 35.87 2.94
90 91 6.183361 TGCATGCAAATAGATTAGTCTCTCCT 60.183 38.462 20.30 0.00 35.87 3.69
91 92 5.994054 TGCATGCAAATAGATTAGTCTCTCC 59.006 40.000 20.30 0.00 35.87 3.71
92 93 7.670009 ATGCATGCAAATAGATTAGTCTCTC 57.330 36.000 26.68 0.00 35.87 3.20
93 94 8.152898 TGTATGCATGCAAATAGATTAGTCTCT 58.847 33.333 26.68 4.38 35.87 3.10
94 95 8.315391 TGTATGCATGCAAATAGATTAGTCTC 57.685 34.615 26.68 0.00 35.87 3.36
95 96 8.859236 ATGTATGCATGCAAATAGATTAGTCT 57.141 30.769 26.68 5.59 34.70 3.24
96 97 9.979270 GTATGTATGCATGCAAATAGATTAGTC 57.021 33.333 26.68 5.96 37.60 2.59
97 98 9.506018 TGTATGTATGCATGCAAATAGATTAGT 57.494 29.630 26.68 6.39 43.07 2.24
108 109 3.952967 ACACCATTGTATGTATGCATGCA 59.047 39.130 25.04 25.04 44.04 3.96
109 110 4.572985 ACACCATTGTATGTATGCATGC 57.427 40.909 11.82 11.82 38.06 4.06
110 111 7.644945 CACTTTACACCATTGTATGTATGCATG 59.355 37.037 10.16 0.00 38.05 4.06
111 112 7.339212 ACACTTTACACCATTGTATGTATGCAT 59.661 33.333 3.79 3.79 38.05 3.96
112 113 6.657117 ACACTTTACACCATTGTATGTATGCA 59.343 34.615 0.00 0.00 38.05 3.96
113 114 6.966632 CACACTTTACACCATTGTATGTATGC 59.033 38.462 0.38 0.00 38.05 3.14
114 115 6.966632 GCACACTTTACACCATTGTATGTATG 59.033 38.462 0.38 0.00 38.05 2.39
115 116 6.884295 AGCACACTTTACACCATTGTATGTAT 59.116 34.615 0.00 0.00 38.05 2.29
116 117 6.148645 CAGCACACTTTACACCATTGTATGTA 59.851 38.462 0.00 0.00 38.05 2.29
117 118 5.048782 CAGCACACTTTACACCATTGTATGT 60.049 40.000 0.00 0.00 38.05 2.29
118 119 5.393124 CAGCACACTTTACACCATTGTATG 58.607 41.667 0.00 0.00 38.05 2.39
119 120 4.082787 GCAGCACACTTTACACCATTGTAT 60.083 41.667 0.00 0.00 38.05 2.29
120 121 3.252215 GCAGCACACTTTACACCATTGTA 59.748 43.478 0.00 0.00 37.15 2.41
121 122 2.034558 GCAGCACACTTTACACCATTGT 59.965 45.455 0.00 0.00 40.02 2.71
122 123 2.664916 GCAGCACACTTTACACCATTG 58.335 47.619 0.00 0.00 0.00 2.82
123 124 1.266718 CGCAGCACACTTTACACCATT 59.733 47.619 0.00 0.00 0.00 3.16
124 125 0.874390 CGCAGCACACTTTACACCAT 59.126 50.000 0.00 0.00 0.00 3.55
125 126 1.163420 CCGCAGCACACTTTACACCA 61.163 55.000 0.00 0.00 0.00 4.17
126 127 1.574428 CCGCAGCACACTTTACACC 59.426 57.895 0.00 0.00 0.00 4.16
127 128 1.082104 GCCGCAGCACACTTTACAC 60.082 57.895 0.00 0.00 39.53 2.90
128 129 0.817634 AAGCCGCAGCACACTTTACA 60.818 50.000 0.00 0.00 43.56 2.41
129 130 0.385974 CAAGCCGCAGCACACTTTAC 60.386 55.000 0.00 0.00 43.56 2.01
130 131 0.817634 ACAAGCCGCAGCACACTTTA 60.818 50.000 0.00 0.00 43.56 1.85
131 132 1.666209 AACAAGCCGCAGCACACTTT 61.666 50.000 0.00 0.00 43.56 2.66
132 133 1.666209 AAACAAGCCGCAGCACACTT 61.666 50.000 0.00 0.00 43.56 3.16
133 134 2.063541 GAAACAAGCCGCAGCACACT 62.064 55.000 0.00 0.00 43.56 3.55
134 135 1.658409 GAAACAAGCCGCAGCACAC 60.658 57.895 0.00 0.00 43.56 3.82
135 136 2.721231 GAAACAAGCCGCAGCACA 59.279 55.556 0.00 0.00 43.56 4.57
136 137 2.050077 GGAAACAAGCCGCAGCAC 60.050 61.111 0.00 0.00 43.56 4.40
137 138 3.294493 GGGAAACAAGCCGCAGCA 61.294 61.111 0.00 0.00 43.56 4.41
138 139 4.056125 GGGGAAACAAGCCGCAGC 62.056 66.667 0.00 0.00 38.18 5.25
139 140 3.737172 CGGGGAAACAAGCCGCAG 61.737 66.667 0.00 0.00 38.18 5.18
142 143 4.338710 TCCCGGGGAAACAAGCCG 62.339 66.667 23.50 0.00 33.14 5.52
143 144 2.361230 CTCCCGGGGAAACAAGCC 60.361 66.667 23.50 0.00 0.00 4.35
144 145 0.538746 TTTCTCCCGGGGAAACAAGC 60.539 55.000 24.84 0.00 0.00 4.01
145 146 1.818674 CATTTCTCCCGGGGAAACAAG 59.181 52.381 28.65 20.54 35.84 3.16
146 147 1.146152 ACATTTCTCCCGGGGAAACAA 59.854 47.619 28.65 14.93 35.84 2.83
147 148 0.774908 ACATTTCTCCCGGGGAAACA 59.225 50.000 28.65 15.49 35.84 2.83
148 149 1.173913 CACATTTCTCCCGGGGAAAC 58.826 55.000 28.65 0.00 35.84 2.78
149 150 1.004277 CTCACATTTCTCCCGGGGAAA 59.996 52.381 28.39 28.39 37.15 3.13
150 151 0.618458 CTCACATTTCTCCCGGGGAA 59.382 55.000 23.50 19.90 0.00 3.97
151 152 0.252513 TCTCACATTTCTCCCGGGGA 60.253 55.000 23.50 16.55 0.00 4.81
152 153 0.618458 TTCTCACATTTCTCCCGGGG 59.382 55.000 23.50 12.05 0.00 5.73
153 154 1.407437 CCTTCTCACATTTCTCCCGGG 60.407 57.143 16.85 16.85 0.00 5.73
154 155 1.555075 TCCTTCTCACATTTCTCCCGG 59.445 52.381 0.00 0.00 0.00 5.73
155 156 3.462021 GATCCTTCTCACATTTCTCCCG 58.538 50.000 0.00 0.00 0.00 5.14
156 157 3.118592 ACGATCCTTCTCACATTTCTCCC 60.119 47.826 0.00 0.00 0.00 4.30
157 158 4.130286 ACGATCCTTCTCACATTTCTCC 57.870 45.455 0.00 0.00 0.00 3.71
158 159 4.266502 CGAACGATCCTTCTCACATTTCTC 59.733 45.833 0.00 0.00 0.00 2.87
159 160 4.177026 CGAACGATCCTTCTCACATTTCT 58.823 43.478 0.00 0.00 0.00 2.52
160 161 3.307242 CCGAACGATCCTTCTCACATTTC 59.693 47.826 0.00 0.00 0.00 2.17
161 162 3.056107 TCCGAACGATCCTTCTCACATTT 60.056 43.478 0.00 0.00 0.00 2.32
162 163 2.496070 TCCGAACGATCCTTCTCACATT 59.504 45.455 0.00 0.00 0.00 2.71
163 164 2.100197 TCCGAACGATCCTTCTCACAT 58.900 47.619 0.00 0.00 0.00 3.21
164 165 1.201647 GTCCGAACGATCCTTCTCACA 59.798 52.381 0.00 0.00 0.00 3.58
165 166 1.469423 GGTCCGAACGATCCTTCTCAC 60.469 57.143 0.00 0.42 0.00 3.51
166 167 0.815734 GGTCCGAACGATCCTTCTCA 59.184 55.000 0.00 0.00 0.00 3.27
167 168 1.104630 AGGTCCGAACGATCCTTCTC 58.895 55.000 0.00 0.00 0.00 2.87
168 169 2.431954 TAGGTCCGAACGATCCTTCT 57.568 50.000 12.77 0.00 0.00 2.85
169 170 2.885894 AGATAGGTCCGAACGATCCTTC 59.114 50.000 3.14 10.68 0.00 3.46
170 171 2.946785 AGATAGGTCCGAACGATCCTT 58.053 47.619 3.14 0.00 0.00 3.36
171 172 2.660670 AGATAGGTCCGAACGATCCT 57.339 50.000 3.14 12.36 0.00 3.24
172 173 5.066246 CCTATTAGATAGGTCCGAACGATCC 59.934 48.000 3.14 0.00 45.95 3.36
173 174 6.121613 CCTATTAGATAGGTCCGAACGATC 57.878 45.833 5.94 0.00 45.95 3.69
185 186 5.516996 TGAACGTTCGTGCCTATTAGATAG 58.483 41.667 22.48 0.00 0.00 2.08
186 187 5.297527 TCTGAACGTTCGTGCCTATTAGATA 59.702 40.000 22.48 0.00 0.00 1.98
187 188 4.097437 TCTGAACGTTCGTGCCTATTAGAT 59.903 41.667 22.48 0.00 0.00 1.98
188 189 3.441222 TCTGAACGTTCGTGCCTATTAGA 59.559 43.478 22.48 13.31 0.00 2.10
189 190 3.766151 TCTGAACGTTCGTGCCTATTAG 58.234 45.455 22.48 11.29 0.00 1.73
190 191 3.853831 TCTGAACGTTCGTGCCTATTA 57.146 42.857 22.48 1.59 0.00 0.98
191 192 2.736144 TCTGAACGTTCGTGCCTATT 57.264 45.000 22.48 0.00 0.00 1.73
192 193 2.736144 TTCTGAACGTTCGTGCCTAT 57.264 45.000 22.48 0.00 0.00 2.57
193 194 2.736144 ATTCTGAACGTTCGTGCCTA 57.264 45.000 22.48 3.77 0.00 3.93
194 195 2.736144 TATTCTGAACGTTCGTGCCT 57.264 45.000 22.48 9.17 0.00 4.75
195 196 4.143597 CGATATATTCTGAACGTTCGTGCC 60.144 45.833 22.48 0.14 0.00 5.01
196 197 4.660907 GCGATATATTCTGAACGTTCGTGC 60.661 45.833 22.48 10.08 0.00 5.34
197 198 4.429939 CGCGATATATTCTGAACGTTCGTG 60.430 45.833 22.48 17.29 0.00 4.35
198 199 3.662645 CGCGATATATTCTGAACGTTCGT 59.337 43.478 22.48 11.31 0.00 3.85
199 200 3.057739 CCGCGATATATTCTGAACGTTCG 59.942 47.826 22.48 16.77 0.00 3.95
200 201 3.979495 ACCGCGATATATTCTGAACGTTC 59.021 43.478 21.42 21.42 0.00 3.95
201 202 3.973657 ACCGCGATATATTCTGAACGTT 58.026 40.909 8.23 0.00 0.00 3.99
202 203 3.562505 GACCGCGATATATTCTGAACGT 58.437 45.455 8.23 0.00 0.00 3.99
203 204 2.915463 GGACCGCGATATATTCTGAACG 59.085 50.000 8.23 0.00 0.00 3.95
204 205 4.175787 AGGACCGCGATATATTCTGAAC 57.824 45.455 8.23 0.00 0.00 3.18
205 206 4.279922 TGAAGGACCGCGATATATTCTGAA 59.720 41.667 8.23 0.00 0.00 3.02
206 207 3.824443 TGAAGGACCGCGATATATTCTGA 59.176 43.478 8.23 0.00 0.00 3.27
207 208 4.082733 TCTGAAGGACCGCGATATATTCTG 60.083 45.833 8.23 9.30 0.00 3.02
208 209 4.079970 TCTGAAGGACCGCGATATATTCT 58.920 43.478 8.23 0.00 0.00 2.40
209 210 4.436242 TCTGAAGGACCGCGATATATTC 57.564 45.455 8.23 5.88 0.00 1.75
210 211 4.866508 TTCTGAAGGACCGCGATATATT 57.133 40.909 8.23 0.00 0.00 1.28
211 212 4.866508 TTTCTGAAGGACCGCGATATAT 57.133 40.909 8.23 0.00 0.00 0.86
212 213 4.659111 TTTTCTGAAGGACCGCGATATA 57.341 40.909 8.23 0.00 0.00 0.86
213 214 3.536956 TTTTCTGAAGGACCGCGATAT 57.463 42.857 8.23 0.00 0.00 1.63
214 215 3.132289 AGATTTTCTGAAGGACCGCGATA 59.868 43.478 8.23 0.00 0.00 2.92
215 216 2.093447 AGATTTTCTGAAGGACCGCGAT 60.093 45.455 8.23 0.00 0.00 4.58
216 217 1.275291 AGATTTTCTGAAGGACCGCGA 59.725 47.619 8.23 0.00 0.00 5.87
217 218 1.726853 AGATTTTCTGAAGGACCGCG 58.273 50.000 0.00 0.00 0.00 6.46
218 219 4.444720 CGTATAGATTTTCTGAAGGACCGC 59.555 45.833 0.00 0.00 0.00 5.68
219 220 4.444720 GCGTATAGATTTTCTGAAGGACCG 59.555 45.833 0.00 0.00 0.00 4.79
220 221 5.463724 CAGCGTATAGATTTTCTGAAGGACC 59.536 44.000 0.00 0.00 0.00 4.46
221 222 6.043411 ACAGCGTATAGATTTTCTGAAGGAC 58.957 40.000 0.00 0.00 0.00 3.85
222 223 6.096987 AGACAGCGTATAGATTTTCTGAAGGA 59.903 38.462 0.00 0.00 0.00 3.36
223 224 6.276847 AGACAGCGTATAGATTTTCTGAAGG 58.723 40.000 0.00 0.00 0.00 3.46
224 225 7.167302 CAGAGACAGCGTATAGATTTTCTGAAG 59.833 40.741 0.00 0.00 32.25 3.02
225 226 6.975197 CAGAGACAGCGTATAGATTTTCTGAA 59.025 38.462 0.00 0.00 32.25 3.02
226 227 6.095580 ACAGAGACAGCGTATAGATTTTCTGA 59.904 38.462 0.00 0.00 34.14 3.27
227 228 6.269315 ACAGAGACAGCGTATAGATTTTCTG 58.731 40.000 0.00 0.00 35.63 3.02
228 229 6.458232 ACAGAGACAGCGTATAGATTTTCT 57.542 37.500 0.00 0.00 0.00 2.52
229 230 8.804688 ATTACAGAGACAGCGTATAGATTTTC 57.195 34.615 0.00 0.00 0.00 2.29
230 231 9.250624 GAATTACAGAGACAGCGTATAGATTTT 57.749 33.333 0.00 0.00 0.00 1.82
231 232 8.414003 TGAATTACAGAGACAGCGTATAGATTT 58.586 33.333 0.00 0.00 0.00 2.17
232 233 7.941919 TGAATTACAGAGACAGCGTATAGATT 58.058 34.615 0.00 0.00 0.00 2.40
233 234 7.511959 TGAATTACAGAGACAGCGTATAGAT 57.488 36.000 0.00 0.00 0.00 1.98
234 235 6.937436 TGAATTACAGAGACAGCGTATAGA 57.063 37.500 0.00 0.00 0.00 1.98
247 248 8.795513 TGAAGCAATCAATTTCTGAATTACAGA 58.204 29.630 0.00 0.00 43.45 3.41
248 249 8.975410 TGAAGCAATCAATTTCTGAATTACAG 57.025 30.769 0.00 0.00 40.49 2.74
249 250 9.932207 AATGAAGCAATCAATTTCTGAATTACA 57.068 25.926 0.00 0.00 42.54 2.41
252 253 9.667107 ATGAATGAAGCAATCAATTTCTGAATT 57.333 25.926 0.00 0.00 42.54 2.17
253 254 9.098355 CATGAATGAAGCAATCAATTTCTGAAT 57.902 29.630 0.00 0.00 42.54 2.57
254 255 7.064134 GCATGAATGAAGCAATCAATTTCTGAA 59.936 33.333 0.00 0.00 42.54 3.02
255 256 6.533723 GCATGAATGAAGCAATCAATTTCTGA 59.466 34.615 0.00 0.00 42.54 3.27
256 257 6.312672 TGCATGAATGAAGCAATCAATTTCTG 59.687 34.615 0.00 1.00 42.54 3.02
257 258 6.312918 GTGCATGAATGAAGCAATCAATTTCT 59.687 34.615 0.00 0.00 42.54 2.52
258 259 6.312918 AGTGCATGAATGAAGCAATCAATTTC 59.687 34.615 0.00 0.00 42.54 2.17
259 260 6.170506 AGTGCATGAATGAAGCAATCAATTT 58.829 32.000 0.00 0.00 42.54 1.82
260 261 5.730550 AGTGCATGAATGAAGCAATCAATT 58.269 33.333 0.00 0.00 42.54 2.32
261 262 5.339008 AGTGCATGAATGAAGCAATCAAT 57.661 34.783 0.00 0.00 42.54 2.57
262 263 4.794278 AGTGCATGAATGAAGCAATCAA 57.206 36.364 0.00 0.00 42.54 2.57
263 264 4.945543 AGTAGTGCATGAATGAAGCAATCA 59.054 37.500 0.00 0.00 43.67 2.57
264 265 5.271625 CAGTAGTGCATGAATGAAGCAATC 58.728 41.667 0.00 0.00 40.35 2.67
265 266 5.244785 CAGTAGTGCATGAATGAAGCAAT 57.755 39.130 0.00 0.00 40.35 3.56
266 267 4.690184 CAGTAGTGCATGAATGAAGCAA 57.310 40.909 0.00 0.00 40.35 3.91
280 281 8.812972 TCCCCTGTATATAAAATAGCAGTAGTG 58.187 37.037 0.00 0.00 0.00 2.74
281 282 8.967779 TCCCCTGTATATAAAATAGCAGTAGT 57.032 34.615 0.00 0.00 0.00 2.73
283 284 9.555411 TGATCCCCTGTATATAAAATAGCAGTA 57.445 33.333 0.00 0.00 0.00 2.74
284 285 8.449423 TGATCCCCTGTATATAAAATAGCAGT 57.551 34.615 0.00 0.00 0.00 4.40
285 286 7.989741 CCTGATCCCCTGTATATAAAATAGCAG 59.010 40.741 0.00 0.00 0.00 4.24
286 287 7.092444 CCCTGATCCCCTGTATATAAAATAGCA 60.092 40.741 0.00 0.00 0.00 3.49
287 288 7.127339 TCCCTGATCCCCTGTATATAAAATAGC 59.873 40.741 0.00 0.00 0.00 2.97
288 289 8.624019 TCCCTGATCCCCTGTATATAAAATAG 57.376 38.462 0.00 0.00 0.00 1.73
289 290 7.627697 CCTCCCTGATCCCCTGTATATAAAATA 59.372 40.741 0.00 0.00 0.00 1.40
290 291 6.448387 CCTCCCTGATCCCCTGTATATAAAAT 59.552 42.308 0.00 0.00 0.00 1.82
291 292 5.790618 CCTCCCTGATCCCCTGTATATAAAA 59.209 44.000 0.00 0.00 0.00 1.52
292 293 5.078715 TCCTCCCTGATCCCCTGTATATAAA 59.921 44.000 0.00 0.00 0.00 1.40
293 294 4.615201 TCCTCCCTGATCCCCTGTATATAA 59.385 45.833 0.00 0.00 0.00 0.98
294 295 4.200106 TCCTCCCTGATCCCCTGTATATA 58.800 47.826 0.00 0.00 0.00 0.86
295 296 3.011348 TCCTCCCTGATCCCCTGTATAT 58.989 50.000 0.00 0.00 0.00 0.86
296 297 2.383683 CTCCTCCCTGATCCCCTGTATA 59.616 54.545 0.00 0.00 0.00 1.47
297 298 1.150986 CTCCTCCCTGATCCCCTGTAT 59.849 57.143 0.00 0.00 0.00 2.29
298 299 0.563173 CTCCTCCCTGATCCCCTGTA 59.437 60.000 0.00 0.00 0.00 2.74
299 300 1.231751 TCTCCTCCCTGATCCCCTGT 61.232 60.000 0.00 0.00 0.00 4.00
300 301 0.471591 CTCTCCTCCCTGATCCCCTG 60.472 65.000 0.00 0.00 0.00 4.45
301 302 1.945447 CTCTCCTCCCTGATCCCCT 59.055 63.158 0.00 0.00 0.00 4.79
302 303 1.841103 GCTCTCCTCCCTGATCCCC 60.841 68.421 0.00 0.00 0.00 4.81
303 304 1.074926 TGCTCTCCTCCCTGATCCC 60.075 63.158 0.00 0.00 0.00 3.85
304 305 0.398381 ACTGCTCTCCTCCCTGATCC 60.398 60.000 0.00 0.00 0.00 3.36
305 306 2.238521 CTACTGCTCTCCTCCCTGATC 58.761 57.143 0.00 0.00 0.00 2.92
306 307 1.757405 GCTACTGCTCTCCTCCCTGAT 60.757 57.143 0.00 0.00 36.03 2.90
307 308 0.396417 GCTACTGCTCTCCTCCCTGA 60.396 60.000 0.00 0.00 36.03 3.86
308 309 1.398958 GGCTACTGCTCTCCTCCCTG 61.399 65.000 0.00 0.00 39.59 4.45
309 310 1.075600 GGCTACTGCTCTCCTCCCT 60.076 63.158 0.00 0.00 39.59 4.20
310 311 1.075600 AGGCTACTGCTCTCCTCCC 60.076 63.158 0.00 0.00 39.59 4.30
311 312 2.123409 CAGGCTACTGCTCTCCTCC 58.877 63.158 0.00 0.00 38.01 4.30
325 326 3.360340 AAACTCGCAGCAGCAGGC 61.360 61.111 0.82 0.00 42.27 4.85
326 327 1.789078 AACAAACTCGCAGCAGCAGG 61.789 55.000 0.82 0.00 42.27 4.85
327 328 0.385223 GAACAAACTCGCAGCAGCAG 60.385 55.000 0.82 0.52 42.27 4.24
328 329 1.094650 TGAACAAACTCGCAGCAGCA 61.095 50.000 0.82 0.00 42.27 4.41
329 330 0.239347 ATGAACAAACTCGCAGCAGC 59.761 50.000 0.00 0.00 37.42 5.25
330 331 1.959747 CATGAACAAACTCGCAGCAG 58.040 50.000 0.00 0.00 0.00 4.24
331 332 0.040157 GCATGAACAAACTCGCAGCA 60.040 50.000 0.00 0.00 0.00 4.41
332 333 0.239347 AGCATGAACAAACTCGCAGC 59.761 50.000 0.00 0.00 0.00 5.25
333 334 1.959747 CAGCATGAACAAACTCGCAG 58.040 50.000 0.00 0.00 39.69 5.18
334 335 0.040157 GCAGCATGAACAAACTCGCA 60.040 50.000 0.00 0.00 39.69 5.10
335 336 0.239347 AGCAGCATGAACAAACTCGC 59.761 50.000 0.00 0.00 39.69 5.03
336 337 2.225019 AGAAGCAGCATGAACAAACTCG 59.775 45.455 0.00 0.00 39.69 4.18
337 338 3.911661 AGAAGCAGCATGAACAAACTC 57.088 42.857 0.00 0.00 39.69 3.01
338 339 3.243636 CCAAGAAGCAGCATGAACAAACT 60.244 43.478 0.00 0.00 39.69 2.66
339 340 3.054878 CCAAGAAGCAGCATGAACAAAC 58.945 45.455 0.00 0.00 39.69 2.93
340 341 2.694628 ACCAAGAAGCAGCATGAACAAA 59.305 40.909 0.00 0.00 39.69 2.83
341 342 2.309613 ACCAAGAAGCAGCATGAACAA 58.690 42.857 0.00 0.00 39.69 2.83
342 343 1.985473 ACCAAGAAGCAGCATGAACA 58.015 45.000 0.00 0.00 39.69 3.18
343 344 3.503748 AGTAACCAAGAAGCAGCATGAAC 59.496 43.478 0.00 0.00 39.69 3.18
344 345 3.754965 AGTAACCAAGAAGCAGCATGAA 58.245 40.909 0.00 0.00 39.69 2.57
345 346 3.423539 AGTAACCAAGAAGCAGCATGA 57.576 42.857 0.00 0.00 39.69 3.07
346 347 4.256920 AGTAGTAACCAAGAAGCAGCATG 58.743 43.478 0.00 0.00 40.87 4.06
347 348 4.508662 GAGTAGTAACCAAGAAGCAGCAT 58.491 43.478 0.00 0.00 0.00 3.79
348 349 3.306780 GGAGTAGTAACCAAGAAGCAGCA 60.307 47.826 0.00 0.00 0.00 4.41
349 350 3.263261 GGAGTAGTAACCAAGAAGCAGC 58.737 50.000 0.00 0.00 0.00 5.25
350 351 3.515901 AGGGAGTAGTAACCAAGAAGCAG 59.484 47.826 0.00 0.00 0.00 4.24
351 352 3.514309 GAGGGAGTAGTAACCAAGAAGCA 59.486 47.826 0.00 0.00 0.00 3.91
352 353 3.770388 AGAGGGAGTAGTAACCAAGAAGC 59.230 47.826 0.00 0.00 0.00 3.86
353 354 4.773149 ACAGAGGGAGTAGTAACCAAGAAG 59.227 45.833 0.00 0.00 0.00 2.85
354 355 4.748701 ACAGAGGGAGTAGTAACCAAGAA 58.251 43.478 0.00 0.00 0.00 2.52
355 356 4.399483 ACAGAGGGAGTAGTAACCAAGA 57.601 45.455 0.00 0.00 0.00 3.02
356 357 4.527038 TCAACAGAGGGAGTAGTAACCAAG 59.473 45.833 0.00 0.00 0.00 3.61
357 358 4.282703 GTCAACAGAGGGAGTAGTAACCAA 59.717 45.833 0.00 0.00 0.00 3.67
358 359 3.830755 GTCAACAGAGGGAGTAGTAACCA 59.169 47.826 0.00 0.00 0.00 3.67
359 360 3.195182 GGTCAACAGAGGGAGTAGTAACC 59.805 52.174 0.00 0.00 0.00 2.85
360 361 3.830755 TGGTCAACAGAGGGAGTAGTAAC 59.169 47.826 0.00 0.00 0.00 2.50
361 362 4.122337 TGGTCAACAGAGGGAGTAGTAA 57.878 45.455 0.00 0.00 0.00 2.24
362 363 3.820195 TGGTCAACAGAGGGAGTAGTA 57.180 47.619 0.00 0.00 0.00 1.82
363 364 2.696526 TGGTCAACAGAGGGAGTAGT 57.303 50.000 0.00 0.00 0.00 2.73
374 375 2.895404 GTGTAGTACTCCCTGGTCAACA 59.105 50.000 0.00 0.00 0.00 3.33
375 376 2.895404 TGTGTAGTACTCCCTGGTCAAC 59.105 50.000 0.00 0.00 0.00 3.18
376 377 3.247948 TGTGTAGTACTCCCTGGTCAA 57.752 47.619 0.00 0.00 0.00 3.18
377 378 2.984435 TGTGTAGTACTCCCTGGTCA 57.016 50.000 0.00 0.00 0.00 4.02
378 379 3.633418 AGATGTGTAGTACTCCCTGGTC 58.367 50.000 0.00 0.00 0.00 4.02
379 380 3.759815 AGATGTGTAGTACTCCCTGGT 57.240 47.619 0.00 0.00 0.00 4.00
380 381 6.304624 TGTATAGATGTGTAGTACTCCCTGG 58.695 44.000 0.00 0.00 0.00 4.45
381 382 7.225011 TCTGTATAGATGTGTAGTACTCCCTG 58.775 42.308 0.00 0.00 0.00 4.45
382 383 7.292827 TCTCTGTATAGATGTGTAGTACTCCCT 59.707 40.741 0.00 1.54 31.21 4.20
383 384 7.451732 TCTCTGTATAGATGTGTAGTACTCCC 58.548 42.308 0.00 0.00 31.21 4.30
384 385 8.776470 GTTCTCTGTATAGATGTGTAGTACTCC 58.224 40.741 0.00 0.00 31.21 3.85
385 386 9.327628 TGTTCTCTGTATAGATGTGTAGTACTC 57.672 37.037 0.00 0.00 31.21 2.59
386 387 9.111613 GTGTTCTCTGTATAGATGTGTAGTACT 57.888 37.037 0.00 0.00 31.21 2.73
387 388 8.890718 TGTGTTCTCTGTATAGATGTGTAGTAC 58.109 37.037 0.00 0.00 31.21 2.73
388 389 9.457436 TTGTGTTCTCTGTATAGATGTGTAGTA 57.543 33.333 0.00 0.00 31.21 1.82
389 390 7.939784 TGTGTTCTCTGTATAGATGTGTAGT 57.060 36.000 0.00 0.00 31.21 2.73
390 391 9.295214 CTTTGTGTTCTCTGTATAGATGTGTAG 57.705 37.037 0.00 0.00 31.21 2.74
391 392 9.020731 TCTTTGTGTTCTCTGTATAGATGTGTA 57.979 33.333 0.00 0.00 31.21 2.90
392 393 7.896811 TCTTTGTGTTCTCTGTATAGATGTGT 58.103 34.615 0.00 0.00 31.21 3.72
393 394 8.651588 GTTCTTTGTGTTCTCTGTATAGATGTG 58.348 37.037 0.00 0.00 31.21 3.21
394 395 8.367911 TGTTCTTTGTGTTCTCTGTATAGATGT 58.632 33.333 0.00 0.00 31.21 3.06
395 396 8.763049 TGTTCTTTGTGTTCTCTGTATAGATG 57.237 34.615 0.00 0.00 31.21 2.90
396 397 8.807118 TCTGTTCTTTGTGTTCTCTGTATAGAT 58.193 33.333 0.00 0.00 31.21 1.98
397 398 8.178313 TCTGTTCTTTGTGTTCTCTGTATAGA 57.822 34.615 0.00 0.00 0.00 1.98
398 399 8.818141 TTCTGTTCTTTGTGTTCTCTGTATAG 57.182 34.615 0.00 0.00 0.00 1.31
399 400 7.872993 CCTTCTGTTCTTTGTGTTCTCTGTATA 59.127 37.037 0.00 0.00 0.00 1.47
400 401 6.708054 CCTTCTGTTCTTTGTGTTCTCTGTAT 59.292 38.462 0.00 0.00 0.00 2.29
401 402 6.049149 CCTTCTGTTCTTTGTGTTCTCTGTA 58.951 40.000 0.00 0.00 0.00 2.74
402 403 4.878397 CCTTCTGTTCTTTGTGTTCTCTGT 59.122 41.667 0.00 0.00 0.00 3.41
403 404 4.260948 GCCTTCTGTTCTTTGTGTTCTCTG 60.261 45.833 0.00 0.00 0.00 3.35
404 405 3.879892 GCCTTCTGTTCTTTGTGTTCTCT 59.120 43.478 0.00 0.00 0.00 3.10
405 406 3.879892 AGCCTTCTGTTCTTTGTGTTCTC 59.120 43.478 0.00 0.00 0.00 2.87
406 407 3.629398 CAGCCTTCTGTTCTTTGTGTTCT 59.371 43.478 0.00 0.00 35.61 3.01
407 408 3.627577 TCAGCCTTCTGTTCTTTGTGTTC 59.372 43.478 0.00 0.00 41.10 3.18
408 409 3.620488 TCAGCCTTCTGTTCTTTGTGTT 58.380 40.909 0.00 0.00 41.10 3.32
409 410 3.281727 TCAGCCTTCTGTTCTTTGTGT 57.718 42.857 0.00 0.00 41.10 3.72
410 411 3.611057 GCATCAGCCTTCTGTTCTTTGTG 60.611 47.826 0.00 0.00 41.10 3.33
411 412 2.555757 GCATCAGCCTTCTGTTCTTTGT 59.444 45.455 0.00 0.00 41.10 2.83
412 413 2.818432 AGCATCAGCCTTCTGTTCTTTG 59.182 45.455 0.00 0.00 43.56 2.77
413 414 3.151912 AGCATCAGCCTTCTGTTCTTT 57.848 42.857 0.00 0.00 43.56 2.52
414 415 2.818432 CAAGCATCAGCCTTCTGTTCTT 59.182 45.455 0.00 0.00 43.56 2.52
415 416 2.434428 CAAGCATCAGCCTTCTGTTCT 58.566 47.619 0.00 0.00 43.56 3.01
416 417 1.135460 GCAAGCATCAGCCTTCTGTTC 60.135 52.381 0.00 0.00 43.56 3.18
417 418 0.886563 GCAAGCATCAGCCTTCTGTT 59.113 50.000 0.00 0.00 43.56 3.16
418 419 0.037877 AGCAAGCATCAGCCTTCTGT 59.962 50.000 0.00 0.00 43.56 3.41
419 420 0.452184 CAGCAAGCATCAGCCTTCTG 59.548 55.000 0.00 0.00 43.56 3.02
420 421 1.313812 GCAGCAAGCATCAGCCTTCT 61.314 55.000 0.00 0.00 44.79 2.85
421 422 1.139095 GCAGCAAGCATCAGCCTTC 59.861 57.895 0.00 0.00 44.79 3.46
422 423 3.285371 GCAGCAAGCATCAGCCTT 58.715 55.556 0.00 0.00 44.79 4.35
439 440 3.736252 CGAGGTATGTATCCGCTTGAAAG 59.264 47.826 0.00 0.00 0.00 2.62
440 441 3.382227 TCGAGGTATGTATCCGCTTGAAA 59.618 43.478 0.00 0.00 0.00 2.69
441 442 2.953648 TCGAGGTATGTATCCGCTTGAA 59.046 45.455 0.00 0.00 0.00 2.69
442 443 2.552743 CTCGAGGTATGTATCCGCTTGA 59.447 50.000 3.91 0.00 0.00 3.02
443 444 2.552743 TCTCGAGGTATGTATCCGCTTG 59.447 50.000 13.56 0.00 0.00 4.01
444 445 2.860009 TCTCGAGGTATGTATCCGCTT 58.140 47.619 13.56 0.00 0.00 4.68
445 446 2.563261 TCTCGAGGTATGTATCCGCT 57.437 50.000 13.56 0.00 0.00 5.52
446 447 4.959596 TTATCTCGAGGTATGTATCCGC 57.040 45.455 13.56 0.00 0.00 5.54
447 448 5.744345 GCAATTATCTCGAGGTATGTATCCG 59.256 44.000 13.56 0.00 0.00 4.18
448 449 6.531948 GTGCAATTATCTCGAGGTATGTATCC 59.468 42.308 13.56 0.00 0.00 2.59
449 450 6.251589 CGTGCAATTATCTCGAGGTATGTATC 59.748 42.308 13.56 0.00 0.00 2.24
450 451 6.093404 CGTGCAATTATCTCGAGGTATGTAT 58.907 40.000 13.56 0.00 0.00 2.29
451 452 5.009310 ACGTGCAATTATCTCGAGGTATGTA 59.991 40.000 13.56 2.67 0.00 2.29
452 453 4.202121 ACGTGCAATTATCTCGAGGTATGT 60.202 41.667 13.56 3.52 0.00 2.29
453 454 4.299155 ACGTGCAATTATCTCGAGGTATG 58.701 43.478 13.56 7.27 0.00 2.39
454 455 4.585955 ACGTGCAATTATCTCGAGGTAT 57.414 40.909 13.56 1.86 0.00 2.73
455 456 5.239963 TGATACGTGCAATTATCTCGAGGTA 59.760 40.000 13.56 7.02 0.00 3.08
456 457 2.961526 ACGTGCAATTATCTCGAGGT 57.038 45.000 13.56 8.33 0.00 3.85
457 458 4.546570 TGATACGTGCAATTATCTCGAGG 58.453 43.478 13.56 0.00 0.00 4.63
458 459 5.287274 GGATGATACGTGCAATTATCTCGAG 59.713 44.000 5.93 5.93 0.00 4.04
459 460 5.048013 AGGATGATACGTGCAATTATCTCGA 60.048 40.000 14.09 0.00 0.00 4.04
528 529 1.319541 ATCAGGACCGTAGTGGATCG 58.680 55.000 0.00 0.00 42.00 3.69
1388 1431 3.759086 TGGTCGTATGATCTCTATCAGGC 59.241 47.826 0.00 0.00 45.17 4.85
2561 2606 5.600696 ACCAAGAAAAGTTAGCATGTTTGG 58.399 37.500 0.00 0.00 38.71 3.28
2627 2672 7.338196 TCAGTCCAAAACTACAACAATGAAGAA 59.662 33.333 0.00 0.00 36.07 2.52
2736 2781 2.464157 GCAGGAAGCTACAAGAGTGT 57.536 50.000 0.00 0.00 42.09 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.