Multiple sequence alignment - TraesCS4D01G300100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G300100 chr4D 100.000 8356 0 0 1 8356 468691067 468699422 0.000000e+00 15431.0
1 TraesCS4D01G300100 chr4D 91.837 98 5 2 305 402 24455885 24455791 5.260000e-27 134.0
2 TraesCS4D01G300100 chr4D 97.297 74 2 0 1882 1955 468692864 468692937 8.800000e-25 126.0
3 TraesCS4D01G300100 chr4D 97.297 74 2 0 1798 1871 468692948 468693021 8.800000e-25 126.0
4 TraesCS4D01G300100 chr4A 95.918 3381 110 12 2375 5745 2796177 2792815 0.000000e+00 5454.0
5 TraesCS4D01G300100 chr4A 91.673 1285 86 15 5863 7139 2792711 2791440 0.000000e+00 1760.0
6 TraesCS4D01G300100 chr4A 96.752 739 20 2 1050 1784 2797484 2796746 0.000000e+00 1229.0
7 TraesCS4D01G300100 chr4A 84.980 1245 84 42 7144 8356 2791405 2790232 0.000000e+00 1168.0
8 TraesCS4D01G300100 chr4A 92.651 381 22 2 1949 2325 2796560 2796182 2.050000e-150 544.0
9 TraesCS4D01G300100 chr4A 92.000 175 14 0 133 307 216443615 216443789 6.480000e-61 246.0
10 TraesCS4D01G300100 chr4A 90.857 175 16 0 133 307 284032459 284032285 1.400000e-57 235.0
11 TraesCS4D01G300100 chr4A 88.177 203 15 3 675 868 2797976 2797774 5.040000e-57 233.0
12 TraesCS4D01G300100 chr4A 94.167 120 3 1 1771 1886 2796691 2796572 6.660000e-41 180.0
13 TraesCS4D01G300100 chr4A 91.919 99 4 3 305 401 464687280 464687376 1.460000e-27 135.0
14 TraesCS4D01G300100 chr4A 95.455 66 1 2 5799 5864 2792803 2792740 4.130000e-18 104.0
15 TraesCS4D01G300100 chr4A 89.744 78 4 1 1882 1955 2796664 2796587 6.900000e-16 97.1
16 TraesCS4D01G300100 chr4B 97.999 1949 30 4 2332 4277 588431001 588432943 0.000000e+00 3374.0
17 TraesCS4D01G300100 chr4B 93.685 2201 97 24 5850 8033 588434783 588436958 0.000000e+00 3256.0
18 TraesCS4D01G300100 chr4B 97.162 1198 30 3 4275 5470 588432983 588434178 0.000000e+00 2021.0
19 TraesCS4D01G300100 chr4B 96.965 1186 31 4 601 1784 588428317 588429499 0.000000e+00 1986.0
20 TraesCS4D01G300100 chr4B 96.620 355 9 2 5497 5851 588434174 588434525 3.360000e-163 586.0
21 TraesCS4D01G300100 chr4B 91.912 408 12 11 1949 2349 588430424 588430817 1.230000e-152 551.0
22 TraesCS4D01G300100 chr4B 91.749 303 16 4 1949 2247 588429679 588429976 6.040000e-111 412.0
23 TraesCS4D01G300100 chr4B 93.023 215 13 2 94 307 588422914 588423127 6.300000e-81 313.0
24 TraesCS4D01G300100 chr4B 83.537 328 38 6 8029 8356 588437211 588437522 8.200000e-75 292.0
25 TraesCS4D01G300100 chr4B 88.333 120 10 3 1771 1886 588430198 588430317 3.140000e-29 141.0
26 TraesCS4D01G300100 chr4B 92.941 85 6 0 12 96 588293543 588293627 3.170000e-24 124.0
27 TraesCS4D01G300100 chr4B 97.500 40 0 1 387 425 350632230 350632269 5.410000e-07 67.6
28 TraesCS4D01G300100 chr1B 79.588 534 62 30 7346 7855 44934538 44935048 1.040000e-88 339.0
29 TraesCS4D01G300100 chr3D 92.000 175 14 0 133 307 424897062 424896888 6.480000e-61 246.0
30 TraesCS4D01G300100 chr3D 91.429 175 14 1 133 307 522746087 522746260 1.080000e-58 239.0
31 TraesCS4D01G300100 chr3D 90.385 104 6 3 303 405 82247050 82246950 5.260000e-27 134.0
32 TraesCS4D01G300100 chr2A 92.398 171 13 0 8186 8356 394050212 394050382 2.330000e-60 244.0
33 TraesCS4D01G300100 chr2A 97.368 38 1 0 390 427 487095327 487095364 1.950000e-06 65.8
34 TraesCS4D01G300100 chr6D 91.477 176 15 0 132 307 353851430 353851255 8.380000e-60 243.0
35 TraesCS4D01G300100 chr6D 97.368 38 1 0 390 427 146095812 146095775 1.950000e-06 65.8
36 TraesCS4D01G300100 chr2D 91.429 175 15 0 133 307 180554315 180554489 3.010000e-59 241.0
37 TraesCS4D01G300100 chr2D 91.228 171 15 0 8186 8356 272804807 272804637 5.040000e-57 233.0
38 TraesCS4D01G300100 chr2D 88.601 193 19 3 117 307 318216021 318215830 1.810000e-56 231.0
39 TraesCS4D01G300100 chr2D 85.124 121 18 0 12 132 543393001 543393121 3.170000e-24 124.0
40 TraesCS4D01G300100 chr7B 91.813 171 14 0 8186 8356 90403512 90403342 1.080000e-58 239.0
41 TraesCS4D01G300100 chr7B 94.444 90 3 1 302 391 15307972 15307885 4.070000e-28 137.0
42 TraesCS4D01G300100 chr7B 100.000 36 0 0 390 425 283389010 283388975 5.410000e-07 67.6
43 TraesCS4D01G300100 chr7B 97.500 40 0 1 387 425 305992857 305992896 5.410000e-07 67.6
44 TraesCS4D01G300100 chr5D 91.429 175 13 1 133 307 26255455 26255283 1.080000e-58 239.0
45 TraesCS4D01G300100 chr5D 91.228 171 15 0 8186 8356 449149814 449149984 5.040000e-57 233.0
46 TraesCS4D01G300100 chr3A 91.813 171 14 0 8186 8356 695637851 695638021 1.080000e-58 239.0
47 TraesCS4D01G300100 chrUn 91.228 171 15 0 8186 8356 351214538 351214368 5.040000e-57 233.0
48 TraesCS4D01G300100 chrUn 92.784 97 3 3 295 391 235338678 235338770 4.070000e-28 137.0
49 TraesCS4D01G300100 chrUn 94.444 90 3 1 302 391 333415236 333415149 4.070000e-28 137.0
50 TraesCS4D01G300100 chr7D 91.228 171 15 0 8186 8356 231582397 231582227 5.040000e-57 233.0
51 TraesCS4D01G300100 chr7D 95.604 91 2 1 302 392 626199882 626199970 2.430000e-30 145.0
52 TraesCS4D01G300100 chr1D 91.228 171 15 0 8186 8356 254533048 254533218 5.040000e-57 233.0
53 TraesCS4D01G300100 chr1D 97.500 40 0 1 387 425 310642693 310642654 5.410000e-07 67.6
54 TraesCS4D01G300100 chr2B 92.708 96 4 2 300 394 756555365 756555458 1.460000e-27 135.0
55 TraesCS4D01G300100 chr2B 97.500 40 0 1 387 425 359533974 359533935 5.410000e-07 67.6
56 TraesCS4D01G300100 chr7A 93.333 90 4 1 302 391 28862346 28862259 1.890000e-26 132.0
57 TraesCS4D01G300100 chr7A 97.436 39 0 1 387 424 46262389 46262427 1.950000e-06 65.8
58 TraesCS4D01G300100 chr6B 100.000 36 0 0 390 425 355117986 355118021 5.410000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G300100 chr4D 468691067 468699422 8355 False 15431.000000 15431 100.000000 1 8356 1 chr4D.!!$F1 8355
1 TraesCS4D01G300100 chr4A 2790232 2797976 7744 True 1196.566667 5454 92.168556 675 8356 9 chr4A.!!$R2 7681
2 TraesCS4D01G300100 chr4B 588428317 588437522 9205 False 1402.111111 3374 93.106889 601 8356 9 chr4B.!!$F4 7755
3 TraesCS4D01G300100 chr1B 44934538 44935048 510 False 339.000000 339 79.588000 7346 7855 1 chr1B.!!$F1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
561 562 0.033011 ATGGTCGTCACTAGGAGGCT 60.033 55.0 0.00 0.00 0.00 4.58 F
562 563 0.622136 TGGTCGTCACTAGGAGGCTA 59.378 55.0 0.00 0.00 0.00 3.93 F
719 727 0.790814 GGAGAAGGAAAACGTGCGAG 59.209 55.0 0.00 0.00 0.00 5.03 F
807 817 0.817634 CCACCACAACTCGCTTTCCA 60.818 55.0 0.00 0.00 0.00 3.53 F
1689 1810 1.739067 GCGGCAAGAAGGTGATAACT 58.261 50.0 0.00 0.00 0.00 2.24 F
2929 4037 0.764369 CCCATGCTACTCCAGGCCTA 60.764 60.0 3.98 0.00 0.00 3.93 F
3544 4652 2.434702 ACTTGAGGATTACGGACCATCC 59.565 50.0 1.71 1.71 39.59 3.51 F
4876 6035 0.108945 GCAAGTGGCTTGAGGAATGC 60.109 55.0 12.45 0.00 43.42 3.56 F
5236 6395 0.893270 TGTTTGTCCATGGCCTTCGG 60.893 55.0 6.96 1.11 0.00 4.30 F
6905 8333 1.384989 ATCGGGCTGTCCAGTCGTAG 61.385 60.0 0.00 0.00 32.85 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2053 2945 1.681793 CATGACGACCCGATTCCTAGT 59.318 52.381 0.00 0.00 0.00 2.57 R
2068 2960 2.358957 TCCTGCAATGTAGCACATGAC 58.641 47.619 0.00 0.00 37.97 3.06 R
2581 3689 4.653555 GGCAACAAAGGCCGAAAG 57.346 55.556 0.00 0.00 42.39 2.62 R
2929 4037 3.073650 GCTCCCTCTGTAAATCATCCCAT 59.926 47.826 0.00 0.00 0.00 4.00 R
3451 4559 1.593196 TGTCAAAGAGCCAACGAAGG 58.407 50.000 0.00 0.00 0.00 3.46 R
4306 5465 3.016031 TGTGGCAGTGTAAGCATTATGG 58.984 45.455 0.00 0.00 30.46 2.74 R
5236 6395 0.324645 ATGAGTTGAATGGGCCACCC 60.325 55.000 9.28 3.81 45.71 4.61 R
6612 8040 1.067516 GTGTTGTGGCAGTGAAAGCAT 59.932 47.619 0.00 0.00 0.00 3.79 R
7350 8815 1.546029 CAAGGAAAACAAGGGCTAGGC 59.454 52.381 8.00 8.00 0.00 3.93 R
8201 9961 2.820059 ACGATCAGTCAAAGAGCACA 57.180 45.000 0.00 0.00 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.102481 AAGCGTCACAGGTATAGCCG 59.898 55.000 0.00 0.00 43.70 5.52
20 21 0.750546 AGCGTCACAGGTATAGCCGA 60.751 55.000 0.00 0.00 43.70 5.54
21 22 0.317938 GCGTCACAGGTATAGCCGAG 60.318 60.000 0.00 0.00 43.70 4.63
22 23 0.311165 CGTCACAGGTATAGCCGAGG 59.689 60.000 0.00 0.00 43.70 4.63
23 24 1.688772 GTCACAGGTATAGCCGAGGA 58.311 55.000 0.00 0.00 43.70 3.71
24 25 1.609555 GTCACAGGTATAGCCGAGGAG 59.390 57.143 0.00 0.00 43.70 3.69
25 26 0.962489 CACAGGTATAGCCGAGGAGG 59.038 60.000 0.00 0.00 43.70 4.30
26 27 0.851469 ACAGGTATAGCCGAGGAGGA 59.149 55.000 0.00 0.00 45.00 3.71
27 28 1.217183 ACAGGTATAGCCGAGGAGGAA 59.783 52.381 0.00 0.00 45.00 3.36
28 29 1.889829 CAGGTATAGCCGAGGAGGAAG 59.110 57.143 0.00 0.00 45.00 3.46
29 30 1.203075 AGGTATAGCCGAGGAGGAAGG 60.203 57.143 0.00 0.00 45.00 3.46
30 31 1.203025 GGTATAGCCGAGGAGGAAGGA 60.203 57.143 0.00 0.00 45.00 3.36
31 32 1.887854 GTATAGCCGAGGAGGAAGGAC 59.112 57.143 0.00 0.00 45.00 3.85
32 33 0.824182 ATAGCCGAGGAGGAAGGACG 60.824 60.000 0.00 0.00 45.00 4.79
33 34 4.516195 GCCGAGGAGGAAGGACGC 62.516 72.222 0.00 0.00 45.00 5.19
34 35 4.194720 CCGAGGAGGAAGGACGCG 62.195 72.222 3.53 3.53 45.00 6.01
35 36 3.132139 CGAGGAGGAAGGACGCGA 61.132 66.667 15.93 0.00 0.00 5.87
36 37 2.802106 GAGGAGGAAGGACGCGAG 59.198 66.667 15.93 0.00 0.00 5.03
37 38 3.418744 GAGGAGGAAGGACGCGAGC 62.419 68.421 15.93 3.71 0.00 5.03
38 39 3.453679 GGAGGAAGGACGCGAGCT 61.454 66.667 15.93 0.00 0.00 4.09
39 40 2.103340 GAGGAAGGACGCGAGCTC 59.897 66.667 15.93 2.73 0.00 4.09
40 41 3.418744 GAGGAAGGACGCGAGCTCC 62.419 68.421 15.93 10.15 0.00 4.70
41 42 3.453679 GGAAGGACGCGAGCTCCT 61.454 66.667 15.93 12.83 41.34 3.69
42 43 2.574399 GAAGGACGCGAGCTCCTT 59.426 61.111 24.65 24.65 46.75 3.36
43 44 1.807573 GAAGGACGCGAGCTCCTTG 60.808 63.158 28.14 0.14 45.29 3.61
44 45 2.493907 GAAGGACGCGAGCTCCTTGT 62.494 60.000 28.14 10.58 45.29 3.16
45 46 2.771763 AAGGACGCGAGCTCCTTGTG 62.772 60.000 24.02 3.52 44.36 3.33
46 47 2.811317 GACGCGAGCTCCTTGTGG 60.811 66.667 15.93 0.00 30.28 4.17
47 48 3.282745 GACGCGAGCTCCTTGTGGA 62.283 63.158 15.93 0.00 40.69 4.02
48 49 2.048222 CGCGAGCTCCTTGTGGAA 60.048 61.111 8.47 0.00 42.66 3.53
49 50 1.667830 CGCGAGCTCCTTGTGGAAA 60.668 57.895 8.47 0.00 42.66 3.13
50 51 1.021390 CGCGAGCTCCTTGTGGAAAT 61.021 55.000 8.47 0.00 42.66 2.17
51 52 1.168714 GCGAGCTCCTTGTGGAAATT 58.831 50.000 8.47 0.00 42.66 1.82
52 53 1.131315 GCGAGCTCCTTGTGGAAATTC 59.869 52.381 8.47 0.00 42.66 2.17
53 54 2.426522 CGAGCTCCTTGTGGAAATTCA 58.573 47.619 8.47 0.00 42.66 2.57
54 55 2.160417 CGAGCTCCTTGTGGAAATTCAC 59.840 50.000 8.47 0.00 42.66 3.18
55 56 2.489722 GAGCTCCTTGTGGAAATTCACC 59.510 50.000 0.87 0.00 42.66 4.02
56 57 2.108952 AGCTCCTTGTGGAAATTCACCT 59.891 45.455 0.00 0.00 42.66 4.00
57 58 2.489722 GCTCCTTGTGGAAATTCACCTC 59.510 50.000 0.00 1.39 42.66 3.85
58 59 2.744202 CTCCTTGTGGAAATTCACCTCG 59.256 50.000 0.00 0.00 42.66 4.63
59 60 1.812571 CCTTGTGGAAATTCACCTCGG 59.187 52.381 0.00 0.00 36.87 4.63
60 61 1.200020 CTTGTGGAAATTCACCTCGGC 59.800 52.381 0.00 0.00 36.87 5.54
61 62 0.109532 TGTGGAAATTCACCTCGGCA 59.890 50.000 0.00 0.00 36.87 5.69
62 63 1.271871 TGTGGAAATTCACCTCGGCAT 60.272 47.619 0.00 0.00 36.87 4.40
63 64 1.133025 GTGGAAATTCACCTCGGCATG 59.867 52.381 0.00 0.00 0.00 4.06
64 65 1.004161 TGGAAATTCACCTCGGCATGA 59.996 47.619 0.00 0.00 0.00 3.07
65 66 1.672881 GGAAATTCACCTCGGCATGAG 59.327 52.381 0.00 0.00 44.83 2.90
66 67 1.064654 GAAATTCACCTCGGCATGAGC 59.935 52.381 0.00 0.00 43.82 4.26
67 68 1.091771 AATTCACCTCGGCATGAGCG 61.092 55.000 0.00 0.00 43.82 5.03
68 69 2.930385 ATTCACCTCGGCATGAGCGG 62.930 60.000 0.00 0.00 43.82 5.52
76 77 3.945434 GCATGAGCGGCCATCACG 61.945 66.667 9.72 3.30 0.00 4.35
87 88 3.120385 CATCACGCCGCAGCTCAA 61.120 61.111 0.00 0.00 36.60 3.02
88 89 2.816958 ATCACGCCGCAGCTCAAG 60.817 61.111 0.00 0.00 36.60 3.02
101 102 2.751166 GCTCAAGCTCTGGTCAGTAA 57.249 50.000 0.00 0.00 38.21 2.24
102 103 3.045601 GCTCAAGCTCTGGTCAGTAAA 57.954 47.619 0.00 0.00 38.21 2.01
103 104 2.999355 GCTCAAGCTCTGGTCAGTAAAG 59.001 50.000 0.00 0.00 38.21 1.85
104 105 2.999355 CTCAAGCTCTGGTCAGTAAAGC 59.001 50.000 0.00 2.98 0.00 3.51
105 106 2.634940 TCAAGCTCTGGTCAGTAAAGCT 59.365 45.455 6.79 6.79 44.84 3.74
106 107 3.778954 AAGCTCTGGTCAGTAAAGCTT 57.221 42.857 15.30 15.30 45.76 3.74
107 108 3.326836 AGCTCTGGTCAGTAAAGCTTC 57.673 47.619 0.00 0.00 40.26 3.86
108 109 2.027653 AGCTCTGGTCAGTAAAGCTTCC 60.028 50.000 0.00 0.00 40.26 3.46
109 110 2.937433 GCTCTGGTCAGTAAAGCTTCCC 60.937 54.545 0.00 0.00 0.00 3.97
110 111 1.275291 TCTGGTCAGTAAAGCTTCCCG 59.725 52.381 0.00 0.00 0.00 5.14
111 112 1.275291 CTGGTCAGTAAAGCTTCCCGA 59.725 52.381 0.00 0.00 0.00 5.14
112 113 1.275291 TGGTCAGTAAAGCTTCCCGAG 59.725 52.381 0.00 0.00 0.00 4.63
125 126 4.558538 CTTCCCGAGCTGGATTTTATTG 57.441 45.455 0.00 0.00 42.00 1.90
126 127 2.930950 TCCCGAGCTGGATTTTATTGG 58.069 47.619 0.00 0.00 42.00 3.16
127 128 1.338020 CCCGAGCTGGATTTTATTGGC 59.662 52.381 0.00 0.00 42.00 4.52
128 129 1.338020 CCGAGCTGGATTTTATTGGCC 59.662 52.381 0.00 0.00 42.00 5.36
129 130 2.301346 CGAGCTGGATTTTATTGGCCT 58.699 47.619 3.32 0.00 0.00 5.19
130 131 3.476552 CGAGCTGGATTTTATTGGCCTA 58.523 45.455 3.32 0.00 0.00 3.93
131 132 3.251004 CGAGCTGGATTTTATTGGCCTAC 59.749 47.826 3.32 0.00 0.00 3.18
132 133 4.464947 GAGCTGGATTTTATTGGCCTACT 58.535 43.478 3.32 0.00 0.00 2.57
133 134 4.210331 AGCTGGATTTTATTGGCCTACTG 58.790 43.478 3.32 0.00 0.00 2.74
134 135 4.079787 AGCTGGATTTTATTGGCCTACTGA 60.080 41.667 3.32 0.00 0.00 3.41
135 136 4.829492 GCTGGATTTTATTGGCCTACTGAT 59.171 41.667 3.32 0.00 0.00 2.90
136 137 6.003950 GCTGGATTTTATTGGCCTACTGATA 58.996 40.000 3.32 0.00 0.00 2.15
137 138 6.660949 GCTGGATTTTATTGGCCTACTGATAT 59.339 38.462 3.32 0.00 0.00 1.63
138 139 7.362401 GCTGGATTTTATTGGCCTACTGATATG 60.362 40.741 3.32 0.00 0.00 1.78
139 140 7.526041 TGGATTTTATTGGCCTACTGATATGT 58.474 34.615 3.32 0.00 0.00 2.29
140 141 7.665559 TGGATTTTATTGGCCTACTGATATGTC 59.334 37.037 3.32 0.00 0.00 3.06
141 142 7.121315 GGATTTTATTGGCCTACTGATATGTCC 59.879 40.741 3.32 0.00 0.00 4.02
142 143 6.508030 TTTATTGGCCTACTGATATGTCCA 57.492 37.500 3.32 0.00 0.00 4.02
143 144 6.702449 TTATTGGCCTACTGATATGTCCAT 57.298 37.500 3.32 0.00 0.00 3.41
144 145 5.589367 ATTGGCCTACTGATATGTCCATT 57.411 39.130 3.32 0.00 0.00 3.16
145 146 5.387113 TTGGCCTACTGATATGTCCATTT 57.613 39.130 3.32 0.00 0.00 2.32
146 147 5.387113 TGGCCTACTGATATGTCCATTTT 57.613 39.130 3.32 0.00 0.00 1.82
147 148 5.132502 TGGCCTACTGATATGTCCATTTTG 58.867 41.667 3.32 0.00 0.00 2.44
148 149 4.022849 GGCCTACTGATATGTCCATTTTGC 60.023 45.833 0.00 0.00 0.00 3.68
149 150 4.580167 GCCTACTGATATGTCCATTTTGCA 59.420 41.667 0.00 0.00 0.00 4.08
150 151 5.242393 GCCTACTGATATGTCCATTTTGCAT 59.758 40.000 0.00 0.00 0.00 3.96
151 152 6.569226 GCCTACTGATATGTCCATTTTGCATC 60.569 42.308 0.00 0.00 0.00 3.91
152 153 6.487668 CCTACTGATATGTCCATTTTGCATCA 59.512 38.462 0.00 0.00 0.00 3.07
153 154 6.971726 ACTGATATGTCCATTTTGCATCAT 57.028 33.333 0.00 0.00 0.00 2.45
154 155 6.745116 ACTGATATGTCCATTTTGCATCATG 58.255 36.000 0.00 0.00 0.00 3.07
155 156 6.322969 ACTGATATGTCCATTTTGCATCATGT 59.677 34.615 0.00 0.00 0.00 3.21
156 157 7.114866 TGATATGTCCATTTTGCATCATGTT 57.885 32.000 0.00 0.00 0.00 2.71
157 158 7.557724 TGATATGTCCATTTTGCATCATGTTT 58.442 30.769 0.00 0.00 0.00 2.83
158 159 8.041919 TGATATGTCCATTTTGCATCATGTTTT 58.958 29.630 0.00 0.00 0.00 2.43
159 160 6.730960 ATGTCCATTTTGCATCATGTTTTC 57.269 33.333 0.00 0.00 0.00 2.29
160 161 4.996122 TGTCCATTTTGCATCATGTTTTCC 59.004 37.500 0.00 0.00 0.00 3.13
161 162 5.221682 TGTCCATTTTGCATCATGTTTTCCT 60.222 36.000 0.00 0.00 0.00 3.36
162 163 6.014755 TGTCCATTTTGCATCATGTTTTCCTA 60.015 34.615 0.00 0.00 0.00 2.94
163 164 6.311200 GTCCATTTTGCATCATGTTTTCCTAC 59.689 38.462 0.00 0.00 0.00 3.18
164 165 6.211184 TCCATTTTGCATCATGTTTTCCTACT 59.789 34.615 0.00 0.00 0.00 2.57
165 166 7.395772 TCCATTTTGCATCATGTTTTCCTACTA 59.604 33.333 0.00 0.00 0.00 1.82
166 167 8.199449 CCATTTTGCATCATGTTTTCCTACTAT 58.801 33.333 0.00 0.00 0.00 2.12
167 168 9.590451 CATTTTGCATCATGTTTTCCTACTATT 57.410 29.630 0.00 0.00 0.00 1.73
217 218 7.355332 ACACTTTTTGATGCAATTCTAATGC 57.645 32.000 0.00 0.00 44.08 3.56
218 219 6.369615 ACACTTTTTGATGCAATTCTAATGCC 59.630 34.615 0.00 0.00 43.16 4.40
219 220 6.592607 CACTTTTTGATGCAATTCTAATGCCT 59.407 34.615 0.00 0.00 43.16 4.75
220 221 7.118680 CACTTTTTGATGCAATTCTAATGCCTT 59.881 33.333 0.00 0.00 43.16 4.35
221 222 7.662669 ACTTTTTGATGCAATTCTAATGCCTTT 59.337 29.630 0.00 0.00 43.16 3.11
222 223 7.982761 TTTTGATGCAATTCTAATGCCTTTT 57.017 28.000 0.00 0.00 43.16 2.27
223 224 7.599630 TTTGATGCAATTCTAATGCCTTTTC 57.400 32.000 0.00 0.00 43.16 2.29
224 225 6.534475 TGATGCAATTCTAATGCCTTTTCT 57.466 33.333 0.00 0.00 43.16 2.52
225 226 6.567050 TGATGCAATTCTAATGCCTTTTCTC 58.433 36.000 0.00 0.00 43.16 2.87
226 227 6.379133 TGATGCAATTCTAATGCCTTTTCTCT 59.621 34.615 0.00 0.00 43.16 3.10
227 228 6.199937 TGCAATTCTAATGCCTTTTCTCTC 57.800 37.500 0.00 0.00 43.16 3.20
228 229 5.948162 TGCAATTCTAATGCCTTTTCTCTCT 59.052 36.000 0.00 0.00 43.16 3.10
229 230 6.435277 TGCAATTCTAATGCCTTTTCTCTCTT 59.565 34.615 0.00 0.00 43.16 2.85
230 231 7.611467 TGCAATTCTAATGCCTTTTCTCTCTTA 59.389 33.333 0.00 0.00 43.16 2.10
231 232 8.462016 GCAATTCTAATGCCTTTTCTCTCTTAA 58.538 33.333 0.00 0.00 37.85 1.85
240 241 8.918202 TGCCTTTTCTCTCTTAATTTACAAGA 57.082 30.769 0.00 0.00 0.00 3.02
241 242 9.520515 TGCCTTTTCTCTCTTAATTTACAAGAT 57.479 29.630 0.00 0.00 31.82 2.40
261 262 9.442047 ACAAGATTTACACTAAGAGGAAGATTG 57.558 33.333 0.00 0.00 0.00 2.67
262 263 8.394121 CAAGATTTACACTAAGAGGAAGATTGC 58.606 37.037 0.00 0.00 0.00 3.56
263 264 7.051000 AGATTTACACTAAGAGGAAGATTGCC 58.949 38.462 0.00 0.00 0.00 4.52
264 265 3.252974 ACACTAAGAGGAAGATTGCCG 57.747 47.619 0.00 0.00 0.00 5.69
265 266 2.093447 ACACTAAGAGGAAGATTGCCGG 60.093 50.000 0.00 0.00 0.00 6.13
266 267 1.134371 ACTAAGAGGAAGATTGCCGGC 60.134 52.381 22.73 22.73 0.00 6.13
267 268 0.908910 TAAGAGGAAGATTGCCGGCA 59.091 50.000 29.03 29.03 0.00 5.69
268 269 0.393537 AAGAGGAAGATTGCCGGCAG 60.394 55.000 30.75 0.00 0.00 4.85
269 270 1.078143 GAGGAAGATTGCCGGCAGT 60.078 57.895 30.75 28.43 0.00 4.40
270 271 0.678048 GAGGAAGATTGCCGGCAGTT 60.678 55.000 30.75 23.36 0.00 3.16
271 272 0.962356 AGGAAGATTGCCGGCAGTTG 60.962 55.000 30.75 0.00 0.00 3.16
272 273 1.508088 GAAGATTGCCGGCAGTTGG 59.492 57.895 30.75 0.00 0.00 3.77
273 274 0.960364 GAAGATTGCCGGCAGTTGGA 60.960 55.000 30.75 15.62 0.00 3.53
274 275 0.539438 AAGATTGCCGGCAGTTGGAA 60.539 50.000 30.75 14.75 0.00 3.53
275 276 0.323725 AGATTGCCGGCAGTTGGAAT 60.324 50.000 30.75 19.41 0.00 3.01
276 277 0.532115 GATTGCCGGCAGTTGGAATT 59.468 50.000 30.75 8.01 0.00 2.17
277 278 0.532115 ATTGCCGGCAGTTGGAATTC 59.468 50.000 30.75 0.00 0.00 2.17
278 279 0.539438 TTGCCGGCAGTTGGAATTCT 60.539 50.000 30.75 0.00 0.00 2.40
279 280 1.243342 TGCCGGCAGTTGGAATTCTG 61.243 55.000 29.03 0.00 35.12 3.02
280 281 1.937546 GCCGGCAGTTGGAATTCTGG 61.938 60.000 24.80 0.00 32.94 3.86
281 282 0.322456 CCGGCAGTTGGAATTCTGGA 60.322 55.000 5.23 0.00 32.94 3.86
282 283 1.683011 CCGGCAGTTGGAATTCTGGAT 60.683 52.381 5.23 0.00 32.94 3.41
283 284 1.672881 CGGCAGTTGGAATTCTGGATC 59.327 52.381 5.23 0.00 32.94 3.36
284 285 2.681976 CGGCAGTTGGAATTCTGGATCT 60.682 50.000 5.23 0.00 32.94 2.75
285 286 2.686915 GGCAGTTGGAATTCTGGATCTG 59.313 50.000 5.23 8.39 32.94 2.90
286 287 3.614092 GCAGTTGGAATTCTGGATCTGA 58.386 45.455 5.23 0.00 32.94 3.27
287 288 4.012374 GCAGTTGGAATTCTGGATCTGAA 58.988 43.478 5.23 0.00 32.94 3.02
288 289 4.460382 GCAGTTGGAATTCTGGATCTGAAA 59.540 41.667 5.23 0.00 32.94 2.69
289 290 5.047802 GCAGTTGGAATTCTGGATCTGAAAA 60.048 40.000 5.23 0.00 32.94 2.29
290 291 6.517194 GCAGTTGGAATTCTGGATCTGAAAAA 60.517 38.462 5.23 0.00 32.94 1.94
291 292 7.088905 CAGTTGGAATTCTGGATCTGAAAAAG 58.911 38.462 5.23 0.00 0.00 2.27
292 293 5.649782 TGGAATTCTGGATCTGAAAAAGC 57.350 39.130 5.23 0.00 0.00 3.51
293 294 5.327732 TGGAATTCTGGATCTGAAAAAGCT 58.672 37.500 5.23 0.00 0.00 3.74
294 295 6.484288 TGGAATTCTGGATCTGAAAAAGCTA 58.516 36.000 5.23 0.00 0.00 3.32
295 296 7.121382 TGGAATTCTGGATCTGAAAAAGCTAT 58.879 34.615 5.23 0.00 0.00 2.97
296 297 8.274322 TGGAATTCTGGATCTGAAAAAGCTATA 58.726 33.333 5.23 0.00 0.00 1.31
297 298 9.294614 GGAATTCTGGATCTGAAAAAGCTATAT 57.705 33.333 5.23 0.00 0.00 0.86
299 300 9.857656 AATTCTGGATCTGAAAAAGCTATATCA 57.142 29.630 0.00 0.00 0.00 2.15
300 301 8.899427 TTCTGGATCTGAAAAAGCTATATCAG 57.101 34.615 13.58 13.58 40.46 2.90
315 316 9.554053 AAGCTATATCAGATATACTCCCTTTGT 57.446 33.333 6.08 0.00 0.00 2.83
316 317 9.196139 AGCTATATCAGATATACTCCCTTTGTC 57.804 37.037 6.08 0.00 0.00 3.18
317 318 8.417884 GCTATATCAGATATACTCCCTTTGTCC 58.582 40.741 6.08 0.00 0.00 4.02
318 319 7.741554 ATATCAGATATACTCCCTTTGTCCC 57.258 40.000 0.54 0.00 0.00 4.46
319 320 4.890988 TCAGATATACTCCCTTTGTCCCA 58.109 43.478 0.00 0.00 0.00 4.37
320 321 5.476983 TCAGATATACTCCCTTTGTCCCAT 58.523 41.667 0.00 0.00 0.00 4.00
321 322 6.630131 TCAGATATACTCCCTTTGTCCCATA 58.370 40.000 0.00 0.00 0.00 2.74
322 323 7.079700 TCAGATATACTCCCTTTGTCCCATAA 58.920 38.462 0.00 0.00 0.00 1.90
323 324 7.739444 TCAGATATACTCCCTTTGTCCCATAAT 59.261 37.037 0.00 0.00 0.00 1.28
324 325 7.826252 CAGATATACTCCCTTTGTCCCATAATG 59.174 40.741 0.00 0.00 0.00 1.90
325 326 5.994416 ATACTCCCTTTGTCCCATAATGT 57.006 39.130 0.00 0.00 0.00 2.71
326 327 8.751215 ATATACTCCCTTTGTCCCATAATGTA 57.249 34.615 0.00 0.00 0.00 2.29
327 328 5.789574 ACTCCCTTTGTCCCATAATGTAA 57.210 39.130 0.00 0.00 0.00 2.41
328 329 5.755849 ACTCCCTTTGTCCCATAATGTAAG 58.244 41.667 0.00 0.00 0.00 2.34
329 330 5.491078 ACTCCCTTTGTCCCATAATGTAAGA 59.509 40.000 0.00 0.00 0.00 2.10
330 331 5.751586 TCCCTTTGTCCCATAATGTAAGAC 58.248 41.667 0.00 0.00 0.00 3.01
331 332 4.574828 CCCTTTGTCCCATAATGTAAGACG 59.425 45.833 0.00 0.00 0.00 4.18
332 333 5.183228 CCTTTGTCCCATAATGTAAGACGT 58.817 41.667 0.00 0.00 0.00 4.34
333 334 5.646360 CCTTTGTCCCATAATGTAAGACGTT 59.354 40.000 0.00 0.00 0.00 3.99
334 335 6.150474 CCTTTGTCCCATAATGTAAGACGTTT 59.850 38.462 0.00 0.00 0.00 3.60
335 336 7.308951 CCTTTGTCCCATAATGTAAGACGTTTT 60.309 37.037 0.00 0.00 0.00 2.43
336 337 7.513371 TTGTCCCATAATGTAAGACGTTTTT 57.487 32.000 0.00 0.00 0.00 1.94
386 387 4.377897 GTCTTACATTATGGGACGAAGGG 58.622 47.826 0.00 0.00 0.00 3.95
387 388 4.100498 GTCTTACATTATGGGACGAAGGGA 59.900 45.833 0.00 0.00 0.00 4.20
388 389 4.344102 TCTTACATTATGGGACGAAGGGAG 59.656 45.833 0.00 0.00 0.00 4.30
389 390 2.478292 ACATTATGGGACGAAGGGAGT 58.522 47.619 0.00 0.00 0.00 3.85
390 391 3.649843 ACATTATGGGACGAAGGGAGTA 58.350 45.455 0.00 0.00 0.00 2.59
391 392 3.387050 ACATTATGGGACGAAGGGAGTAC 59.613 47.826 0.00 0.00 0.00 2.73
392 393 2.077687 TATGGGACGAAGGGAGTACC 57.922 55.000 0.00 0.00 42.94 3.34
406 407 5.291905 GGGAGTACCTATTATGCACAACT 57.708 43.478 0.00 0.00 35.85 3.16
407 408 5.298347 GGGAGTACCTATTATGCACAACTC 58.702 45.833 0.00 0.00 35.85 3.01
408 409 5.298347 GGAGTACCTATTATGCACAACTCC 58.702 45.833 2.70 2.70 43.44 3.85
409 410 5.914033 GAGTACCTATTATGCACAACTCCA 58.086 41.667 0.00 0.00 0.00 3.86
410 411 6.308015 AGTACCTATTATGCACAACTCCAA 57.692 37.500 0.00 0.00 0.00 3.53
411 412 6.717289 AGTACCTATTATGCACAACTCCAAA 58.283 36.000 0.00 0.00 0.00 3.28
412 413 7.346471 AGTACCTATTATGCACAACTCCAAAT 58.654 34.615 0.00 0.00 0.00 2.32
413 414 6.455360 ACCTATTATGCACAACTCCAAATG 57.545 37.500 0.00 0.00 0.00 2.32
414 415 6.186957 ACCTATTATGCACAACTCCAAATGA 58.813 36.000 0.00 0.00 0.00 2.57
416 417 4.439305 TTATGCACAACTCCAAATGAGC 57.561 40.909 0.00 0.00 45.61 4.26
417 418 1.985473 TGCACAACTCCAAATGAGCT 58.015 45.000 0.00 0.00 45.61 4.09
418 419 1.610038 TGCACAACTCCAAATGAGCTG 59.390 47.619 0.00 0.00 45.61 4.24
419 420 1.881973 GCACAACTCCAAATGAGCTGA 59.118 47.619 0.00 0.00 45.61 4.26
420 421 2.294233 GCACAACTCCAAATGAGCTGAA 59.706 45.455 0.00 0.00 45.61 3.02
421 422 3.243501 GCACAACTCCAAATGAGCTGAAA 60.244 43.478 0.00 0.00 45.61 2.69
422 423 4.737352 GCACAACTCCAAATGAGCTGAAAA 60.737 41.667 0.00 0.00 45.61 2.29
423 424 5.535333 CACAACTCCAAATGAGCTGAAAAT 58.465 37.500 0.00 0.00 45.61 1.82
424 425 5.987347 CACAACTCCAAATGAGCTGAAAATT 59.013 36.000 0.00 0.00 45.61 1.82
425 426 6.145048 CACAACTCCAAATGAGCTGAAAATTC 59.855 38.462 0.00 0.00 45.61 2.17
426 427 5.051891 ACTCCAAATGAGCTGAAAATTCG 57.948 39.130 0.00 0.00 45.61 3.34
427 428 4.082571 ACTCCAAATGAGCTGAAAATTCGG 60.083 41.667 0.00 0.00 45.61 4.30
439 440 4.236935 TGAAAATTCGGCTTTTCTGATGC 58.763 39.130 18.00 0.00 42.80 3.91
440 441 2.549633 AATTCGGCTTTTCTGATGCG 57.450 45.000 0.00 0.00 0.00 4.73
441 442 0.099436 ATTCGGCTTTTCTGATGCGC 59.901 50.000 0.00 0.00 0.00 6.09
442 443 0.955428 TTCGGCTTTTCTGATGCGCT 60.955 50.000 9.73 0.00 0.00 5.92
443 444 1.226211 CGGCTTTTCTGATGCGCTG 60.226 57.895 9.73 0.00 0.00 5.18
444 445 1.638388 CGGCTTTTCTGATGCGCTGA 61.638 55.000 9.73 0.00 0.00 4.26
445 446 0.098376 GGCTTTTCTGATGCGCTGAG 59.902 55.000 9.73 1.29 0.00 3.35
446 447 0.801251 GCTTTTCTGATGCGCTGAGT 59.199 50.000 9.73 0.00 0.00 3.41
447 448 1.202009 GCTTTTCTGATGCGCTGAGTC 60.202 52.381 9.73 2.19 0.00 3.36
448 449 2.344950 CTTTTCTGATGCGCTGAGTCT 58.655 47.619 9.73 0.00 0.00 3.24
449 450 2.462456 TTTCTGATGCGCTGAGTCTT 57.538 45.000 9.73 0.00 0.00 3.01
450 451 2.462456 TTCTGATGCGCTGAGTCTTT 57.538 45.000 9.73 0.00 0.00 2.52
451 452 3.592898 TTCTGATGCGCTGAGTCTTTA 57.407 42.857 9.73 0.00 0.00 1.85
452 453 3.808466 TCTGATGCGCTGAGTCTTTAT 57.192 42.857 9.73 0.00 0.00 1.40
453 454 3.451526 TCTGATGCGCTGAGTCTTTATG 58.548 45.455 9.73 0.00 0.00 1.90
454 455 2.543012 CTGATGCGCTGAGTCTTTATGG 59.457 50.000 9.73 0.00 0.00 2.74
455 456 2.093500 TGATGCGCTGAGTCTTTATGGT 60.093 45.455 9.73 0.00 0.00 3.55
456 457 2.010145 TGCGCTGAGTCTTTATGGTC 57.990 50.000 9.73 0.00 0.00 4.02
457 458 1.550524 TGCGCTGAGTCTTTATGGTCT 59.449 47.619 9.73 0.00 0.00 3.85
458 459 2.028112 TGCGCTGAGTCTTTATGGTCTT 60.028 45.455 9.73 0.00 0.00 3.01
459 460 3.194755 TGCGCTGAGTCTTTATGGTCTTA 59.805 43.478 9.73 0.00 0.00 2.10
460 461 3.799420 GCGCTGAGTCTTTATGGTCTTAG 59.201 47.826 0.00 0.00 0.00 2.18
461 462 3.799420 CGCTGAGTCTTTATGGTCTTAGC 59.201 47.826 0.00 0.00 36.60 3.09
462 463 4.678044 CGCTGAGTCTTTATGGTCTTAGCA 60.678 45.833 0.00 0.00 38.73 3.49
463 464 4.568760 GCTGAGTCTTTATGGTCTTAGCAC 59.431 45.833 0.00 0.00 38.69 4.40
464 465 4.744570 TGAGTCTTTATGGTCTTAGCACG 58.255 43.478 0.00 0.00 0.00 5.34
465 466 4.461431 TGAGTCTTTATGGTCTTAGCACGA 59.539 41.667 0.00 0.00 0.00 4.35
466 467 4.745649 AGTCTTTATGGTCTTAGCACGAC 58.254 43.478 0.00 0.00 0.00 4.34
467 468 3.546670 GTCTTTATGGTCTTAGCACGACG 59.453 47.826 0.00 0.00 32.24 5.12
468 469 2.572191 TTATGGTCTTAGCACGACGG 57.428 50.000 0.00 0.00 32.24 4.79
469 470 0.101759 TATGGTCTTAGCACGACGGC 59.898 55.000 0.00 0.00 32.24 5.68
471 472 1.080025 GGTCTTAGCACGACGGCTT 60.080 57.895 14.55 2.16 42.71 4.35
472 473 0.669625 GGTCTTAGCACGACGGCTTT 60.670 55.000 14.55 0.00 42.71 3.51
473 474 1.145803 GTCTTAGCACGACGGCTTTT 58.854 50.000 14.55 0.00 42.71 2.27
474 475 1.126296 GTCTTAGCACGACGGCTTTTC 59.874 52.381 14.55 2.88 42.71 2.29
475 476 0.093026 CTTAGCACGACGGCTTTTCG 59.907 55.000 14.55 0.00 42.71 3.46
476 477 1.286354 TTAGCACGACGGCTTTTCGG 61.286 55.000 14.55 0.00 42.71 4.30
477 478 4.736631 GCACGACGGCTTTTCGGC 62.737 66.667 0.00 4.34 40.92 5.54
478 479 3.041940 CACGACGGCTTTTCGGCT 61.042 61.111 0.00 0.00 40.92 5.52
479 480 3.041940 ACGACGGCTTTTCGGCTG 61.042 61.111 0.00 0.00 40.92 4.85
483 484 2.863153 CGGCTTTTCGGCTGTCTG 59.137 61.111 0.00 0.00 35.72 3.51
484 485 2.563427 GGCTTTTCGGCTGTCTGC 59.437 61.111 0.00 0.00 41.94 4.26
485 486 1.968540 GGCTTTTCGGCTGTCTGCT 60.969 57.895 1.44 0.00 42.39 4.24
486 487 0.673644 GGCTTTTCGGCTGTCTGCTA 60.674 55.000 1.44 0.00 42.39 3.49
487 488 0.444260 GCTTTTCGGCTGTCTGCTAC 59.556 55.000 1.44 0.00 42.39 3.58
488 489 1.795768 CTTTTCGGCTGTCTGCTACA 58.204 50.000 1.44 0.00 42.39 2.74
507 508 4.151417 CAAAGTTTGCGGGCGATG 57.849 55.556 1.96 0.00 0.00 3.84
508 509 1.578926 CAAAGTTTGCGGGCGATGA 59.421 52.632 1.96 0.00 0.00 2.92
509 510 0.729140 CAAAGTTTGCGGGCGATGAC 60.729 55.000 1.96 0.00 0.00 3.06
510 511 2.182614 AAAGTTTGCGGGCGATGACG 62.183 55.000 0.00 0.00 42.93 4.35
511 512 3.115892 GTTTGCGGGCGATGACGA 61.116 61.111 0.00 0.00 42.66 4.20
526 527 4.099924 CGACAGCGTGCTTTTTCG 57.900 55.556 0.00 0.00 0.00 3.46
532 533 2.551270 CGTGCTTTTTCGCTCGCT 59.449 55.556 0.00 0.00 39.51 4.93
533 534 1.082756 CGTGCTTTTTCGCTCGCTT 60.083 52.632 0.00 0.00 39.51 4.68
534 535 0.657368 CGTGCTTTTTCGCTCGCTTT 60.657 50.000 0.00 0.00 39.51 3.51
535 536 1.397945 CGTGCTTTTTCGCTCGCTTTA 60.398 47.619 0.00 0.00 39.51 1.85
536 537 2.234187 GTGCTTTTTCGCTCGCTTTAG 58.766 47.619 0.00 0.00 0.00 1.85
537 538 1.871039 TGCTTTTTCGCTCGCTTTAGT 59.129 42.857 0.00 0.00 0.00 2.24
538 539 2.234187 GCTTTTTCGCTCGCTTTAGTG 58.766 47.619 0.00 0.00 0.00 2.74
539 540 2.234187 CTTTTTCGCTCGCTTTAGTGC 58.766 47.619 0.00 0.00 0.00 4.40
540 541 1.508632 TTTTCGCTCGCTTTAGTGCT 58.491 45.000 0.00 0.00 0.00 4.40
541 542 1.508632 TTTCGCTCGCTTTAGTGCTT 58.491 45.000 0.00 0.00 0.00 3.91
542 543 2.357327 TTCGCTCGCTTTAGTGCTTA 57.643 45.000 0.00 0.00 0.00 3.09
543 544 2.579207 TCGCTCGCTTTAGTGCTTAT 57.421 45.000 0.00 0.00 0.00 1.73
544 545 2.193447 TCGCTCGCTTTAGTGCTTATG 58.807 47.619 0.00 0.00 0.00 1.90
545 546 1.258982 CGCTCGCTTTAGTGCTTATGG 59.741 52.381 0.00 0.00 0.00 2.74
546 547 2.280628 GCTCGCTTTAGTGCTTATGGT 58.719 47.619 0.00 0.00 0.00 3.55
547 548 2.285488 GCTCGCTTTAGTGCTTATGGTC 59.715 50.000 0.00 0.00 0.00 4.02
548 549 2.535984 CTCGCTTTAGTGCTTATGGTCG 59.464 50.000 0.00 0.00 0.00 4.79
549 550 2.094390 TCGCTTTAGTGCTTATGGTCGT 60.094 45.455 0.00 0.00 0.00 4.34
550 551 2.281762 CGCTTTAGTGCTTATGGTCGTC 59.718 50.000 0.00 0.00 0.00 4.20
551 552 3.259064 GCTTTAGTGCTTATGGTCGTCA 58.741 45.455 0.00 0.00 0.00 4.35
552 553 3.062234 GCTTTAGTGCTTATGGTCGTCAC 59.938 47.826 0.00 0.00 0.00 3.67
553 554 4.495422 CTTTAGTGCTTATGGTCGTCACT 58.505 43.478 0.00 0.00 40.60 3.41
554 555 5.647589 CTTTAGTGCTTATGGTCGTCACTA 58.352 41.667 0.00 0.00 38.71 2.74
555 556 3.784701 AGTGCTTATGGTCGTCACTAG 57.215 47.619 0.00 0.00 36.37 2.57
556 557 2.427453 AGTGCTTATGGTCGTCACTAGG 59.573 50.000 0.00 0.00 36.37 3.02
557 558 2.426024 GTGCTTATGGTCGTCACTAGGA 59.574 50.000 0.00 0.00 0.00 2.94
558 559 2.688446 TGCTTATGGTCGTCACTAGGAG 59.312 50.000 0.00 0.00 0.00 3.69
559 560 2.034812 GCTTATGGTCGTCACTAGGAGG 59.965 54.545 0.00 0.00 0.00 4.30
560 561 1.688772 TATGGTCGTCACTAGGAGGC 58.311 55.000 0.00 0.00 0.00 4.70
561 562 0.033011 ATGGTCGTCACTAGGAGGCT 60.033 55.000 0.00 0.00 0.00 4.58
562 563 0.622136 TGGTCGTCACTAGGAGGCTA 59.378 55.000 0.00 0.00 0.00 3.93
563 564 1.214673 TGGTCGTCACTAGGAGGCTAT 59.785 52.381 0.00 0.00 0.00 2.97
564 565 2.440627 TGGTCGTCACTAGGAGGCTATA 59.559 50.000 0.00 0.00 0.00 1.31
565 566 3.075884 GGTCGTCACTAGGAGGCTATAG 58.924 54.545 0.00 0.00 0.00 1.31
566 567 3.244491 GGTCGTCACTAGGAGGCTATAGA 60.244 52.174 3.21 0.00 0.00 1.98
567 568 4.566070 GGTCGTCACTAGGAGGCTATAGAT 60.566 50.000 3.21 0.00 0.00 1.98
568 569 4.632688 GTCGTCACTAGGAGGCTATAGATC 59.367 50.000 3.21 0.25 0.00 2.75
569 570 4.532916 TCGTCACTAGGAGGCTATAGATCT 59.467 45.833 3.21 0.00 0.00 2.75
570 571 4.634004 CGTCACTAGGAGGCTATAGATCTG 59.366 50.000 5.18 0.00 0.00 2.90
571 572 4.947388 GTCACTAGGAGGCTATAGATCTGG 59.053 50.000 5.18 0.00 0.00 3.86
572 573 4.852697 TCACTAGGAGGCTATAGATCTGGA 59.147 45.833 5.18 0.00 0.00 3.86
573 574 5.494341 TCACTAGGAGGCTATAGATCTGGAT 59.506 44.000 5.18 0.00 0.00 3.41
574 575 6.678857 TCACTAGGAGGCTATAGATCTGGATA 59.321 42.308 5.18 0.00 0.00 2.59
575 576 7.352254 TCACTAGGAGGCTATAGATCTGGATAT 59.648 40.741 5.18 0.00 0.00 1.63
576 577 8.664992 CACTAGGAGGCTATAGATCTGGATATA 58.335 40.741 5.18 0.00 0.00 0.86
577 578 8.890472 ACTAGGAGGCTATAGATCTGGATATAG 58.110 40.741 5.18 5.71 35.81 1.31
578 579 7.721537 AGGAGGCTATAGATCTGGATATAGT 57.278 40.000 5.18 0.00 35.36 2.12
579 580 8.125042 AGGAGGCTATAGATCTGGATATAGTT 57.875 38.462 5.18 0.00 35.36 2.24
580 581 8.224720 AGGAGGCTATAGATCTGGATATAGTTC 58.775 40.741 5.18 6.85 35.36 3.01
581 582 8.001875 GGAGGCTATAGATCTGGATATAGTTCA 58.998 40.741 5.18 0.00 35.36 3.18
582 583 9.586732 GAGGCTATAGATCTGGATATAGTTCAT 57.413 37.037 5.18 0.00 35.36 2.57
583 584 9.365906 AGGCTATAGATCTGGATATAGTTCATG 57.634 37.037 5.18 0.00 35.36 3.07
584 585 8.584157 GGCTATAGATCTGGATATAGTTCATGG 58.416 40.741 5.18 0.00 35.36 3.66
585 586 9.142014 GCTATAGATCTGGATATAGTTCATGGT 57.858 37.037 5.18 0.00 35.36 3.55
589 590 8.964533 AGATCTGGATATAGTTCATGGTACTT 57.035 34.615 0.00 0.17 0.00 2.24
590 591 9.030452 AGATCTGGATATAGTTCATGGTACTTC 57.970 37.037 0.00 0.44 0.00 3.01
591 592 8.727100 ATCTGGATATAGTTCATGGTACTTCA 57.273 34.615 6.70 0.00 0.00 3.02
592 593 8.547481 TCTGGATATAGTTCATGGTACTTCAA 57.453 34.615 6.70 0.00 0.00 2.69
593 594 8.421784 TCTGGATATAGTTCATGGTACTTCAAC 58.578 37.037 6.70 0.00 0.00 3.18
594 595 8.084985 TGGATATAGTTCATGGTACTTCAACA 57.915 34.615 6.70 0.00 0.00 3.33
595 596 8.204160 TGGATATAGTTCATGGTACTTCAACAG 58.796 37.037 6.70 0.00 0.00 3.16
596 597 8.204836 GGATATAGTTCATGGTACTTCAACAGT 58.795 37.037 6.70 0.00 39.87 3.55
707 709 4.452733 GCACGGACGGGGAGAAGG 62.453 72.222 0.00 0.00 0.00 3.46
719 727 0.790814 GGAGAAGGAAAACGTGCGAG 59.209 55.000 0.00 0.00 0.00 5.03
807 817 0.817634 CCACCACAACTCGCTTTCCA 60.818 55.000 0.00 0.00 0.00 3.53
892 902 2.022129 CGGATATTCCCGCGTGCTC 61.022 63.158 4.92 0.00 43.25 4.26
903 913 3.411517 CGTGCTCCCCCTCCCAAT 61.412 66.667 0.00 0.00 0.00 3.16
904 914 2.597903 GTGCTCCCCCTCCCAATC 59.402 66.667 0.00 0.00 0.00 2.67
905 915 2.696125 TGCTCCCCCTCCCAATCC 60.696 66.667 0.00 0.00 0.00 3.01
906 916 3.878667 GCTCCCCCTCCCAATCCG 61.879 72.222 0.00 0.00 0.00 4.18
961 971 2.280079 CCCAAATCTGGCCCCTCC 59.720 66.667 0.00 0.00 41.99 4.30
1689 1810 1.739067 GCGGCAAGAAGGTGATAACT 58.261 50.000 0.00 0.00 0.00 2.24
1765 1886 9.985318 GATAGAAGCATGCATTCAGTATAATTC 57.015 33.333 21.98 9.93 0.00 2.17
1942 2702 3.923017 AATTCAGTGTAGCTTGGTTGC 57.077 42.857 0.00 0.00 0.00 4.17
2022 2914 4.273480 TGCAGCAGTTTCTGTTAGAAGTTC 59.727 41.667 0.00 0.00 35.37 3.01
2053 2945 9.088987 TGACTCAATGTAGCATGGTCTATATAA 57.911 33.333 0.00 0.00 0.00 0.98
2068 2960 6.038050 GGTCTATATAACTAGGAATCGGGTCG 59.962 46.154 0.00 0.00 0.00 4.79
2258 3161 8.853126 CATTTTCATGGACCATCATGTTATAGT 58.147 33.333 3.21 0.00 43.52 2.12
2579 3687 6.791887 ACTGTGATAATGCAGATTATTCGG 57.208 37.500 0.00 0.00 35.29 4.30
2581 3689 4.455533 TGTGATAATGCAGATTATTCGGCC 59.544 41.667 7.18 0.00 41.72 6.13
2929 4037 0.764369 CCCATGCTACTCCAGGCCTA 60.764 60.000 3.98 0.00 0.00 3.93
3320 4428 4.158764 AGGGTCTTCATCTTCTTCGTAGTG 59.841 45.833 0.00 0.00 0.00 2.74
3375 4483 6.097554 CAGAGTGGTATGAAGGAGTCATTAGT 59.902 42.308 0.00 0.00 45.13 2.24
3451 4559 3.614092 TCAAAGATGGTCTGGCATTCTC 58.386 45.455 0.00 0.00 0.00 2.87
3544 4652 2.434702 ACTTGAGGATTACGGACCATCC 59.565 50.000 1.71 1.71 39.59 3.51
3778 4886 7.147949 GGCTGGATAAATGAGCTGCATATAAAT 60.148 37.037 1.02 0.00 35.78 1.40
3814 4922 9.612066 AAAATGTTCAAATTGTTACTGGAATGT 57.388 25.926 0.00 0.00 0.00 2.71
3971 5081 9.160496 CTTTGAAAGACACTATAGAATGCTTCT 57.840 33.333 6.78 4.26 43.72 2.85
3974 5084 7.761704 TGAAAGACACTATAGAATGCTTCTCAC 59.238 37.037 6.78 0.00 41.14 3.51
4021 5131 4.904853 ACATGGGGTTATCCTTGTTTGTTT 59.095 37.500 0.00 0.00 40.79 2.83
4264 5374 6.663734 TCTTTCAAATCTTATTCTCCCTCCC 58.336 40.000 0.00 0.00 0.00 4.30
4429 5588 8.217131 ACAAAGTACCACTTTACGATTTTCTT 57.783 30.769 4.10 0.00 45.84 2.52
4876 6035 0.108945 GCAAGTGGCTTGAGGAATGC 60.109 55.000 12.45 0.00 43.42 3.56
4996 6155 5.491982 AGTGTTTCTGGTGAATATCCTGAC 58.508 41.667 0.00 0.00 33.78 3.51
5103 6262 3.357079 CAACAGCGGCTGTGGGAC 61.357 66.667 33.94 0.00 44.62 4.46
5153 6312 4.486125 TGCATTGAACATAGTGGCTCTA 57.514 40.909 0.00 0.00 0.00 2.43
5159 6318 7.065803 GCATTGAACATAGTGGCTCTAAAACTA 59.934 37.037 0.00 0.00 31.94 2.24
5236 6395 0.893270 TGTTTGTCCATGGCCTTCGG 60.893 55.000 6.96 1.11 0.00 4.30
5425 6585 7.931275 ACAAGGTTTGTTCTCTAATTTCTGAC 58.069 34.615 0.00 0.00 42.22 3.51
5445 6606 4.524714 TGACTGTCTCTTAAGTTGGGAGAG 59.475 45.833 9.51 7.50 36.88 3.20
5446 6607 3.835395 ACTGTCTCTTAAGTTGGGAGAGG 59.165 47.826 1.63 8.18 37.95 3.69
5447 6608 2.567615 TGTCTCTTAAGTTGGGAGAGGC 59.432 50.000 1.63 9.14 41.36 4.70
5464 6625 3.068873 AGAGGCTTGTATCGCTCCTTTAG 59.931 47.826 0.00 0.00 0.00 1.85
5470 6631 5.736492 GCTTGTATCGCTCCTTTAGAAGCTA 60.736 44.000 0.00 0.00 38.49 3.32
5472 6633 6.406692 TGTATCGCTCCTTTAGAAGCTAAT 57.593 37.500 0.00 0.00 0.00 1.73
5473 6634 7.520451 TGTATCGCTCCTTTAGAAGCTAATA 57.480 36.000 0.00 0.00 0.00 0.98
5474 6635 7.948357 TGTATCGCTCCTTTAGAAGCTAATAA 58.052 34.615 0.00 0.00 0.00 1.40
5475 6636 8.585881 TGTATCGCTCCTTTAGAAGCTAATAAT 58.414 33.333 0.00 0.00 0.00 1.28
5476 6637 9.425577 GTATCGCTCCTTTAGAAGCTAATAATT 57.574 33.333 0.00 0.00 0.00 1.40
5479 6640 9.998106 TCGCTCCTTTAGAAGCTAATAATTATT 57.002 29.630 14.86 14.86 0.00 1.40
5728 6889 7.352739 ACAAAATTTTCTGACTTAGTAGTGCG 58.647 34.615 0.00 0.00 33.84 5.34
5797 6958 8.648557 TGTACAGATAGAGCATTTTATGACAC 57.351 34.615 0.00 0.00 0.00 3.67
5900 7320 9.098355 TGAGATATTTCGATGTTTTTAGGTGAG 57.902 33.333 0.00 0.00 0.00 3.51
6514 7942 1.694696 AGTGGGTCTCCAAGACTTGTC 59.305 52.381 14.03 2.23 46.04 3.18
6612 8040 7.646548 AATGTTCTCATAGACTAGTACAGCA 57.353 36.000 0.00 0.00 33.49 4.41
6806 8234 5.010820 GGGGAGCTTGTCGTAAGTATTCTAT 59.989 44.000 0.00 0.00 39.48 1.98
6905 8333 1.384989 ATCGGGCTGTCCAGTCGTAG 61.385 60.000 0.00 0.00 32.85 3.51
6921 8354 5.698089 CAGTCGTAGCATGAATAATGATGGT 59.302 40.000 0.00 0.00 38.72 3.55
6959 8392 2.866762 GCCCAAGTAGATGCTAGTTTCG 59.133 50.000 0.00 0.00 0.00 3.46
6968 8401 7.598278 AGTAGATGCTAGTTTCGAATATCCTG 58.402 38.462 0.00 0.00 0.00 3.86
6974 8407 5.388890 GCTAGTTTCGAATATCCTGATTGCG 60.389 44.000 0.00 0.00 0.00 4.85
6986 8419 2.584791 CTGATTGCGGTGCTAAACAAC 58.415 47.619 0.00 0.00 0.00 3.32
7140 8574 6.653989 AGTATGTTCCTGTAATTTCCTCCAG 58.346 40.000 0.00 0.00 0.00 3.86
7155 8618 4.850680 TCCTCCAGACTAGAAGAAGAGTC 58.149 47.826 0.00 0.00 42.06 3.36
7350 8815 0.890996 ACGGGGCAAAAGAGCAGAAG 60.891 55.000 0.00 0.00 35.83 2.85
7446 8912 3.751175 ACATAATTTCCATCGGCGGTATG 59.249 43.478 7.21 4.07 0.00 2.39
7455 8921 1.300697 CGGCGGTATGGAGGCTTAC 60.301 63.158 0.00 0.00 0.00 2.34
7559 9028 5.237561 ACAGAAATACGTTGTACATGTTGCA 59.762 36.000 2.30 0.57 0.00 4.08
7625 9098 9.834628 GAAGTAGCTGATCTGTTGTATATAGTC 57.165 37.037 0.00 0.00 0.00 2.59
7644 9117 1.899814 TCTCTGACGCCCAAACAGTAT 59.100 47.619 0.00 0.00 33.93 2.12
7647 9120 0.398696 TGACGCCCAAACAGTATGGT 59.601 50.000 0.00 0.00 38.54 3.55
7716 9195 2.119029 GTTGCTTACCCGGATGGCC 61.119 63.158 0.73 0.00 37.83 5.36
7890 9393 6.581388 TTCTTAGGGGATCTTGATTCACAT 57.419 37.500 0.00 0.00 0.00 3.21
7954 9457 5.144100 TGGGAGTACATGATTTGGTTTGTT 58.856 37.500 0.00 0.00 0.00 2.83
7968 9471 5.083533 TGGTTTGTTTTGATTGCTTCACT 57.916 34.783 0.00 0.00 32.84 3.41
7969 9472 6.214191 TGGTTTGTTTTGATTGCTTCACTA 57.786 33.333 0.00 0.00 32.84 2.74
8013 9516 6.939163 ACCTAGAAGTATGATGGATGCAAATC 59.061 38.462 0.00 0.00 0.00 2.17
8082 9842 6.860080 ACAAGATTCAAACAATCAGCATAGG 58.140 36.000 0.00 0.00 0.00 2.57
8132 9892 9.899226 CTCAAAAACTAACCAAAATCCTTAGAG 57.101 33.333 0.00 0.00 0.00 2.43
8133 9893 8.357402 TCAAAAACTAACCAAAATCCTTAGAGC 58.643 33.333 0.00 0.00 0.00 4.09
8192 9952 0.611200 TTCACGAATCGGACACCCAT 59.389 50.000 7.80 0.00 0.00 4.00
8201 9961 1.105457 CGGACACCCATCAATGCATT 58.895 50.000 5.99 5.99 0.00 3.56
8205 9965 1.066716 ACACCCATCAATGCATTGTGC 60.067 47.619 32.67 0.00 45.29 4.57
8227 9987 4.796312 GCTCTTTGACTGATCGTTACTCTC 59.204 45.833 0.00 0.00 0.00 3.20
8233 9993 3.542648 ACTGATCGTTACTCTCGATGGA 58.457 45.455 5.58 0.00 45.90 3.41
8257 10017 5.888161 AGAGGATGTTATTGATTGTGAACCC 59.112 40.000 0.00 0.00 0.00 4.11
8344 10107 7.519927 ACTTACCTTATGTAAAACAGTGGGAA 58.480 34.615 0.00 0.00 38.91 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.102481 CGGCTATACCTGTGACGCTT 59.898 55.000 0.00 0.00 35.61 4.68
1 2 0.750546 TCGGCTATACCTGTGACGCT 60.751 55.000 0.00 0.00 35.61 5.07
2 3 0.317938 CTCGGCTATACCTGTGACGC 60.318 60.000 0.00 0.00 35.61 5.19
3 4 0.311165 CCTCGGCTATACCTGTGACG 59.689 60.000 0.00 0.00 35.61 4.35
4 5 1.609555 CTCCTCGGCTATACCTGTGAC 59.390 57.143 0.00 0.00 35.61 3.67
5 6 1.478837 CCTCCTCGGCTATACCTGTGA 60.479 57.143 0.00 0.00 35.61 3.58
6 7 0.962489 CCTCCTCGGCTATACCTGTG 59.038 60.000 0.00 0.00 35.61 3.66
7 8 0.851469 TCCTCCTCGGCTATACCTGT 59.149 55.000 0.00 0.00 35.61 4.00
8 9 1.889829 CTTCCTCCTCGGCTATACCTG 59.110 57.143 0.00 0.00 35.61 4.00
9 10 1.203075 CCTTCCTCCTCGGCTATACCT 60.203 57.143 0.00 0.00 35.61 3.08
10 11 1.203025 TCCTTCCTCCTCGGCTATACC 60.203 57.143 0.00 0.00 0.00 2.73
11 12 1.887854 GTCCTTCCTCCTCGGCTATAC 59.112 57.143 0.00 0.00 0.00 1.47
12 13 1.544982 CGTCCTTCCTCCTCGGCTATA 60.545 57.143 0.00 0.00 0.00 1.31
13 14 0.824182 CGTCCTTCCTCCTCGGCTAT 60.824 60.000 0.00 0.00 0.00 2.97
14 15 1.453379 CGTCCTTCCTCCTCGGCTA 60.453 63.158 0.00 0.00 0.00 3.93
15 16 2.756283 CGTCCTTCCTCCTCGGCT 60.756 66.667 0.00 0.00 0.00 5.52
16 17 4.516195 GCGTCCTTCCTCCTCGGC 62.516 72.222 0.00 0.00 0.00 5.54
17 18 4.194720 CGCGTCCTTCCTCCTCGG 62.195 72.222 0.00 0.00 0.00 4.63
18 19 3.114647 CTCGCGTCCTTCCTCCTCG 62.115 68.421 5.77 0.00 0.00 4.63
19 20 2.802106 CTCGCGTCCTTCCTCCTC 59.198 66.667 5.77 0.00 0.00 3.71
20 21 3.453679 GCTCGCGTCCTTCCTCCT 61.454 66.667 5.77 0.00 0.00 3.69
21 22 3.418744 GAGCTCGCGTCCTTCCTCC 62.419 68.421 5.77 0.00 0.00 4.30
22 23 2.103340 GAGCTCGCGTCCTTCCTC 59.897 66.667 5.77 0.52 0.00 3.71
23 24 3.453679 GGAGCTCGCGTCCTTCCT 61.454 66.667 5.77 0.00 0.00 3.36
24 25 3.453679 AGGAGCTCGCGTCCTTCC 61.454 66.667 10.75 11.30 42.12 3.46
28 29 2.811317 CACAAGGAGCTCGCGTCC 60.811 66.667 5.77 5.98 0.00 4.79
29 30 2.765250 TTCCACAAGGAGCTCGCGTC 62.765 60.000 5.77 0.00 46.74 5.19
30 31 2.377628 TTTCCACAAGGAGCTCGCGT 62.378 55.000 5.77 1.27 46.74 6.01
31 32 1.021390 ATTTCCACAAGGAGCTCGCG 61.021 55.000 7.83 0.00 46.74 5.87
32 33 1.131315 GAATTTCCACAAGGAGCTCGC 59.869 52.381 7.83 0.47 46.74 5.03
33 34 2.160417 GTGAATTTCCACAAGGAGCTCG 59.840 50.000 7.83 0.00 46.74 5.03
34 35 2.489722 GGTGAATTTCCACAAGGAGCTC 59.510 50.000 4.71 4.71 46.74 4.09
35 36 2.108952 AGGTGAATTTCCACAAGGAGCT 59.891 45.455 0.00 0.00 46.74 4.09
36 37 2.489722 GAGGTGAATTTCCACAAGGAGC 59.510 50.000 0.00 0.00 46.74 4.70
37 38 2.744202 CGAGGTGAATTTCCACAAGGAG 59.256 50.000 0.00 0.00 46.74 3.69
38 39 2.552155 CCGAGGTGAATTTCCACAAGGA 60.552 50.000 0.00 0.00 43.93 3.36
39 40 1.812571 CCGAGGTGAATTTCCACAAGG 59.187 52.381 0.00 0.00 38.74 3.61
40 41 1.200020 GCCGAGGTGAATTTCCACAAG 59.800 52.381 0.00 0.00 38.74 3.16
41 42 1.243902 GCCGAGGTGAATTTCCACAA 58.756 50.000 0.00 0.00 38.74 3.33
42 43 0.109532 TGCCGAGGTGAATTTCCACA 59.890 50.000 0.00 0.00 38.74 4.17
43 44 1.133025 CATGCCGAGGTGAATTTCCAC 59.867 52.381 0.00 0.00 36.37 4.02
44 45 1.004161 TCATGCCGAGGTGAATTTCCA 59.996 47.619 0.00 0.00 0.00 3.53
45 46 1.672881 CTCATGCCGAGGTGAATTTCC 59.327 52.381 0.00 0.00 38.18 3.13
46 47 1.064654 GCTCATGCCGAGGTGAATTTC 59.935 52.381 2.74 0.00 42.55 2.17
47 48 1.098050 GCTCATGCCGAGGTGAATTT 58.902 50.000 2.74 0.00 42.55 1.82
48 49 1.091771 CGCTCATGCCGAGGTGAATT 61.092 55.000 2.74 0.00 42.55 2.17
49 50 1.522355 CGCTCATGCCGAGGTGAAT 60.522 57.895 2.74 0.00 42.55 2.57
50 51 2.125552 CGCTCATGCCGAGGTGAA 60.126 61.111 2.74 0.00 42.55 3.18
51 52 4.147449 CCGCTCATGCCGAGGTGA 62.147 66.667 7.10 0.00 42.55 4.02
59 60 3.945434 CGTGATGGCCGCTCATGC 61.945 66.667 12.82 1.28 0.00 4.06
70 71 3.092192 CTTGAGCTGCGGCGTGATG 62.092 63.158 12.87 0.00 44.37 3.07
71 72 2.816958 CTTGAGCTGCGGCGTGAT 60.817 61.111 12.87 0.00 44.37 3.06
82 83 2.751166 TTACTGACCAGAGCTTGAGC 57.249 50.000 3.76 0.00 42.49 4.26
83 84 2.999355 GCTTTACTGACCAGAGCTTGAG 59.001 50.000 3.76 0.00 0.00 3.02
84 85 2.634940 AGCTTTACTGACCAGAGCTTGA 59.365 45.455 3.76 0.00 40.55 3.02
85 86 3.051081 AGCTTTACTGACCAGAGCTTG 57.949 47.619 3.76 0.00 40.55 4.01
86 87 3.778954 AAGCTTTACTGACCAGAGCTT 57.221 42.857 14.76 14.76 45.82 3.74
87 88 2.027653 GGAAGCTTTACTGACCAGAGCT 60.028 50.000 0.00 5.10 44.95 4.09
88 89 2.351455 GGAAGCTTTACTGACCAGAGC 58.649 52.381 0.00 2.83 0.00 4.09
89 90 2.675317 CGGGAAGCTTTACTGACCAGAG 60.675 54.545 0.00 0.00 0.00 3.35
90 91 1.275291 CGGGAAGCTTTACTGACCAGA 59.725 52.381 0.00 0.00 0.00 3.86
91 92 1.275291 TCGGGAAGCTTTACTGACCAG 59.725 52.381 0.00 0.00 0.00 4.00
92 93 1.275291 CTCGGGAAGCTTTACTGACCA 59.725 52.381 0.00 0.00 0.00 4.02
93 94 2.011540 CTCGGGAAGCTTTACTGACC 57.988 55.000 0.00 0.00 0.00 4.02
104 105 3.316308 CCAATAAAATCCAGCTCGGGAAG 59.684 47.826 0.00 0.00 41.12 3.46
105 106 3.287222 CCAATAAAATCCAGCTCGGGAA 58.713 45.455 0.00 0.00 41.12 3.97
106 107 2.930950 CCAATAAAATCCAGCTCGGGA 58.069 47.619 0.00 0.00 42.21 5.14
107 108 1.338020 GCCAATAAAATCCAGCTCGGG 59.662 52.381 2.86 0.00 34.36 5.14
108 109 1.338020 GGCCAATAAAATCCAGCTCGG 59.662 52.381 0.00 0.00 0.00 4.63
109 110 2.301346 AGGCCAATAAAATCCAGCTCG 58.699 47.619 5.01 0.00 0.00 5.03
110 111 4.276926 CAGTAGGCCAATAAAATCCAGCTC 59.723 45.833 5.01 0.00 0.00 4.09
111 112 4.079787 TCAGTAGGCCAATAAAATCCAGCT 60.080 41.667 5.01 0.00 0.00 4.24
112 113 4.207165 TCAGTAGGCCAATAAAATCCAGC 58.793 43.478 5.01 0.00 0.00 4.85
113 114 7.667219 ACATATCAGTAGGCCAATAAAATCCAG 59.333 37.037 5.01 0.00 0.00 3.86
114 115 7.526041 ACATATCAGTAGGCCAATAAAATCCA 58.474 34.615 5.01 0.00 0.00 3.41
115 116 7.121315 GGACATATCAGTAGGCCAATAAAATCC 59.879 40.741 5.01 0.00 0.00 3.01
116 117 7.665559 TGGACATATCAGTAGGCCAATAAAATC 59.334 37.037 5.01 0.00 0.00 2.17
117 118 7.526041 TGGACATATCAGTAGGCCAATAAAAT 58.474 34.615 5.01 0.00 0.00 1.82
118 119 6.905736 TGGACATATCAGTAGGCCAATAAAA 58.094 36.000 5.01 0.00 0.00 1.52
119 120 6.508030 TGGACATATCAGTAGGCCAATAAA 57.492 37.500 5.01 0.00 0.00 1.40
120 121 6.702449 ATGGACATATCAGTAGGCCAATAA 57.298 37.500 5.01 0.00 0.00 1.40
121 122 6.702449 AATGGACATATCAGTAGGCCAATA 57.298 37.500 5.01 0.00 0.00 1.90
122 123 5.589367 AATGGACATATCAGTAGGCCAAT 57.411 39.130 5.01 0.00 0.00 3.16
123 124 5.387113 AAATGGACATATCAGTAGGCCAA 57.613 39.130 5.01 0.00 0.00 4.52
124 125 5.132502 CAAAATGGACATATCAGTAGGCCA 58.867 41.667 5.01 0.00 0.00 5.36
125 126 4.022849 GCAAAATGGACATATCAGTAGGCC 60.023 45.833 0.00 0.00 0.00 5.19
126 127 4.580167 TGCAAAATGGACATATCAGTAGGC 59.420 41.667 0.00 0.00 0.00 3.93
127 128 6.487668 TGATGCAAAATGGACATATCAGTAGG 59.512 38.462 0.00 0.00 0.00 3.18
128 129 7.500720 TGATGCAAAATGGACATATCAGTAG 57.499 36.000 0.00 0.00 0.00 2.57
129 130 7.503230 ACATGATGCAAAATGGACATATCAGTA 59.497 33.333 14.45 0.00 0.00 2.74
130 131 6.322969 ACATGATGCAAAATGGACATATCAGT 59.677 34.615 14.45 0.00 0.00 3.41
131 132 6.745116 ACATGATGCAAAATGGACATATCAG 58.255 36.000 14.45 0.00 0.00 2.90
132 133 6.718522 ACATGATGCAAAATGGACATATCA 57.281 33.333 14.45 0.00 0.00 2.15
133 134 8.428186 AAAACATGATGCAAAATGGACATATC 57.572 30.769 14.45 0.00 0.00 1.63
134 135 7.496591 GGAAAACATGATGCAAAATGGACATAT 59.503 33.333 14.45 0.00 0.00 1.78
135 136 6.817641 GGAAAACATGATGCAAAATGGACATA 59.182 34.615 14.45 0.00 0.00 2.29
136 137 5.644636 GGAAAACATGATGCAAAATGGACAT 59.355 36.000 14.45 0.00 0.00 3.06
137 138 4.996122 GGAAAACATGATGCAAAATGGACA 59.004 37.500 14.45 0.00 0.00 4.02
138 139 5.240121 AGGAAAACATGATGCAAAATGGAC 58.760 37.500 14.45 4.94 0.00 4.02
139 140 5.486735 AGGAAAACATGATGCAAAATGGA 57.513 34.783 14.45 0.00 0.00 3.41
140 141 6.400568 AGTAGGAAAACATGATGCAAAATGG 58.599 36.000 14.45 0.00 0.00 3.16
141 142 9.590451 AATAGTAGGAAAACATGATGCAAAATG 57.410 29.630 0.00 9.74 0.00 2.32
191 192 8.924691 GCATTAGAATTGCATCAAAAAGTGTTA 58.075 29.630 0.00 0.00 0.00 2.41
192 193 7.095102 GGCATTAGAATTGCATCAAAAAGTGTT 60.095 33.333 0.00 0.00 0.00 3.32
193 194 6.369615 GGCATTAGAATTGCATCAAAAAGTGT 59.630 34.615 0.00 0.00 0.00 3.55
194 195 6.592607 AGGCATTAGAATTGCATCAAAAAGTG 59.407 34.615 0.00 0.00 0.00 3.16
195 196 6.704310 AGGCATTAGAATTGCATCAAAAAGT 58.296 32.000 0.00 0.00 0.00 2.66
196 197 7.605410 AAGGCATTAGAATTGCATCAAAAAG 57.395 32.000 0.00 0.00 0.00 2.27
197 198 7.982761 AAAGGCATTAGAATTGCATCAAAAA 57.017 28.000 0.00 0.00 0.00 1.94
198 199 7.879160 AGAAAAGGCATTAGAATTGCATCAAAA 59.121 29.630 0.00 0.00 0.00 2.44
199 200 7.388437 AGAAAAGGCATTAGAATTGCATCAAA 58.612 30.769 0.00 0.00 0.00 2.69
200 201 6.938507 AGAAAAGGCATTAGAATTGCATCAA 58.061 32.000 0.00 0.00 0.00 2.57
201 202 6.379133 AGAGAAAAGGCATTAGAATTGCATCA 59.621 34.615 0.00 0.00 0.00 3.07
202 203 6.803642 AGAGAAAAGGCATTAGAATTGCATC 58.196 36.000 0.00 0.00 0.00 3.91
203 204 6.606395 AGAGAGAAAAGGCATTAGAATTGCAT 59.394 34.615 0.00 0.00 0.00 3.96
204 205 5.948162 AGAGAGAAAAGGCATTAGAATTGCA 59.052 36.000 0.00 0.00 0.00 4.08
205 206 6.448207 AGAGAGAAAAGGCATTAGAATTGC 57.552 37.500 0.00 0.00 0.00 3.56
214 215 9.520515 TCTTGTAAATTAAGAGAGAAAAGGCAT 57.479 29.630 0.00 0.00 31.04 4.40
215 216 8.918202 TCTTGTAAATTAAGAGAGAAAAGGCA 57.082 30.769 0.00 0.00 31.04 4.75
235 236 9.442047 CAATCTTCCTCTTAGTGTAAATCTTGT 57.558 33.333 0.00 0.00 0.00 3.16
236 237 8.394121 GCAATCTTCCTCTTAGTGTAAATCTTG 58.606 37.037 0.00 0.00 0.00 3.02
237 238 7.554476 GGCAATCTTCCTCTTAGTGTAAATCTT 59.446 37.037 0.00 0.00 0.00 2.40
238 239 7.051000 GGCAATCTTCCTCTTAGTGTAAATCT 58.949 38.462 0.00 0.00 0.00 2.40
239 240 6.018669 CGGCAATCTTCCTCTTAGTGTAAATC 60.019 42.308 0.00 0.00 0.00 2.17
240 241 5.817816 CGGCAATCTTCCTCTTAGTGTAAAT 59.182 40.000 0.00 0.00 0.00 1.40
241 242 5.175859 CGGCAATCTTCCTCTTAGTGTAAA 58.824 41.667 0.00 0.00 0.00 2.01
242 243 4.382685 CCGGCAATCTTCCTCTTAGTGTAA 60.383 45.833 0.00 0.00 0.00 2.41
243 244 3.132289 CCGGCAATCTTCCTCTTAGTGTA 59.868 47.826 0.00 0.00 0.00 2.90
244 245 2.093447 CCGGCAATCTTCCTCTTAGTGT 60.093 50.000 0.00 0.00 0.00 3.55
245 246 2.555199 CCGGCAATCTTCCTCTTAGTG 58.445 52.381 0.00 0.00 0.00 2.74
246 247 1.134371 GCCGGCAATCTTCCTCTTAGT 60.134 52.381 24.80 0.00 0.00 2.24
247 248 1.134401 TGCCGGCAATCTTCCTCTTAG 60.134 52.381 30.74 0.00 0.00 2.18
248 249 0.908910 TGCCGGCAATCTTCCTCTTA 59.091 50.000 30.74 0.00 0.00 2.10
249 250 0.393537 CTGCCGGCAATCTTCCTCTT 60.394 55.000 32.09 0.00 0.00 2.85
250 251 1.222936 CTGCCGGCAATCTTCCTCT 59.777 57.895 32.09 0.00 0.00 3.69
251 252 0.678048 AACTGCCGGCAATCTTCCTC 60.678 55.000 32.09 0.00 0.00 3.71
252 253 0.962356 CAACTGCCGGCAATCTTCCT 60.962 55.000 32.09 0.66 0.00 3.36
253 254 1.508088 CAACTGCCGGCAATCTTCC 59.492 57.895 32.09 0.00 0.00 3.46
254 255 0.960364 TCCAACTGCCGGCAATCTTC 60.960 55.000 32.09 0.00 0.00 2.87
255 256 0.539438 TTCCAACTGCCGGCAATCTT 60.539 50.000 32.09 18.53 0.00 2.40
256 257 0.323725 ATTCCAACTGCCGGCAATCT 60.324 50.000 32.09 14.86 0.00 2.40
257 258 0.532115 AATTCCAACTGCCGGCAATC 59.468 50.000 32.09 0.00 0.00 2.67
258 259 0.532115 GAATTCCAACTGCCGGCAAT 59.468 50.000 32.09 20.27 0.00 3.56
259 260 0.539438 AGAATTCCAACTGCCGGCAA 60.539 50.000 32.09 15.48 0.00 4.52
260 261 1.074775 AGAATTCCAACTGCCGGCA 59.925 52.632 30.59 30.59 0.00 5.69
261 262 1.508088 CAGAATTCCAACTGCCGGC 59.492 57.895 22.73 22.73 0.00 6.13
262 263 0.322456 TCCAGAATTCCAACTGCCGG 60.322 55.000 0.65 0.00 33.40 6.13
263 264 1.672881 GATCCAGAATTCCAACTGCCG 59.327 52.381 0.65 0.00 33.40 5.69
264 265 2.686915 CAGATCCAGAATTCCAACTGCC 59.313 50.000 0.65 0.00 33.40 4.85
265 266 3.614092 TCAGATCCAGAATTCCAACTGC 58.386 45.455 0.65 0.00 33.40 4.40
266 267 6.579666 TTTTCAGATCCAGAATTCCAACTG 57.420 37.500 0.65 5.75 0.00 3.16
267 268 6.294955 GCTTTTTCAGATCCAGAATTCCAACT 60.295 38.462 0.65 0.00 0.00 3.16
268 269 5.866092 GCTTTTTCAGATCCAGAATTCCAAC 59.134 40.000 0.65 0.00 0.00 3.77
269 270 5.776716 AGCTTTTTCAGATCCAGAATTCCAA 59.223 36.000 0.65 0.00 0.00 3.53
270 271 5.327732 AGCTTTTTCAGATCCAGAATTCCA 58.672 37.500 0.65 0.00 0.00 3.53
271 272 5.911378 AGCTTTTTCAGATCCAGAATTCC 57.089 39.130 0.65 0.00 0.00 3.01
273 274 9.857656 TGATATAGCTTTTTCAGATCCAGAATT 57.142 29.630 0.00 0.00 0.00 2.17
274 275 9.504708 CTGATATAGCTTTTTCAGATCCAGAAT 57.495 33.333 16.01 0.00 38.25 2.40
275 276 8.708378 TCTGATATAGCTTTTTCAGATCCAGAA 58.292 33.333 18.50 1.26 39.61 3.02
276 277 8.255111 TCTGATATAGCTTTTTCAGATCCAGA 57.745 34.615 18.50 7.08 39.61 3.86
289 290 9.554053 ACAAAGGGAGTATATCTGATATAGCTT 57.446 33.333 15.82 6.76 0.00 3.74
290 291 9.196139 GACAAAGGGAGTATATCTGATATAGCT 57.804 37.037 15.82 14.92 0.00 3.32
291 292 8.417884 GGACAAAGGGAGTATATCTGATATAGC 58.582 40.741 15.82 11.48 0.00 2.97
292 293 8.919145 GGGACAAAGGGAGTATATCTGATATAG 58.081 40.741 15.82 6.29 0.00 1.31
293 294 8.406643 TGGGACAAAGGGAGTATATCTGATATA 58.593 37.037 12.27 12.27 31.92 0.86
294 295 7.256399 TGGGACAAAGGGAGTATATCTGATAT 58.744 38.462 14.18 14.18 31.92 1.63
295 296 6.630131 TGGGACAAAGGGAGTATATCTGATA 58.370 40.000 0.00 0.00 31.92 2.15
296 297 5.476983 TGGGACAAAGGGAGTATATCTGAT 58.523 41.667 0.00 0.00 31.92 2.90
297 298 4.890988 TGGGACAAAGGGAGTATATCTGA 58.109 43.478 0.00 0.00 31.92 3.27
358 359 6.173191 CGTCCCATAATGTAAGACGTTTTT 57.827 37.500 0.00 0.00 43.89 1.94
359 360 5.789710 CGTCCCATAATGTAAGACGTTTT 57.210 39.130 0.00 0.00 43.89 2.43
364 365 4.100498 TCCCTTCGTCCCATAATGTAAGAC 59.900 45.833 0.00 0.00 0.00 3.01
365 366 4.291792 TCCCTTCGTCCCATAATGTAAGA 58.708 43.478 0.00 0.00 0.00 2.10
366 367 4.101119 ACTCCCTTCGTCCCATAATGTAAG 59.899 45.833 0.00 0.00 0.00 2.34
367 368 4.035112 ACTCCCTTCGTCCCATAATGTAA 58.965 43.478 0.00 0.00 0.00 2.41
368 369 3.649843 ACTCCCTTCGTCCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
369 370 2.478292 ACTCCCTTCGTCCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
370 371 3.244112 GGTACTCCCTTCGTCCCATAATG 60.244 52.174 0.00 0.00 0.00 1.90
371 372 2.970640 GGTACTCCCTTCGTCCCATAAT 59.029 50.000 0.00 0.00 0.00 1.28
372 373 2.023695 AGGTACTCCCTTCGTCCCATAA 60.024 50.000 0.00 0.00 42.73 1.90
373 374 1.572415 AGGTACTCCCTTCGTCCCATA 59.428 52.381 0.00 0.00 42.73 2.74
374 375 0.338814 AGGTACTCCCTTCGTCCCAT 59.661 55.000 0.00 0.00 42.73 4.00
375 376 1.002069 TAGGTACTCCCTTCGTCCCA 58.998 55.000 0.00 0.00 42.73 4.37
376 377 2.378378 ATAGGTACTCCCTTCGTCCC 57.622 55.000 0.00 0.00 42.73 4.46
377 378 4.321824 GCATAATAGGTACTCCCTTCGTCC 60.322 50.000 0.00 0.00 42.73 4.79
378 379 4.280174 TGCATAATAGGTACTCCCTTCGTC 59.720 45.833 0.00 0.00 42.73 4.20
379 380 4.038883 GTGCATAATAGGTACTCCCTTCGT 59.961 45.833 0.00 0.00 42.73 3.85
380 381 4.038763 TGTGCATAATAGGTACTCCCTTCG 59.961 45.833 0.00 0.00 42.73 3.79
381 382 5.546621 TGTGCATAATAGGTACTCCCTTC 57.453 43.478 0.00 0.00 42.73 3.46
382 383 5.428783 AGTTGTGCATAATAGGTACTCCCTT 59.571 40.000 0.00 0.00 42.73 3.95
384 385 5.291905 AGTTGTGCATAATAGGTACTCCC 57.708 43.478 0.00 0.00 41.75 4.30
385 386 5.163343 TGGAGTTGTGCATAATAGGTACTCC 60.163 44.000 18.01 18.01 46.66 3.85
386 387 5.914033 TGGAGTTGTGCATAATAGGTACTC 58.086 41.667 0.00 0.69 41.75 2.59
387 388 5.950544 TGGAGTTGTGCATAATAGGTACT 57.049 39.130 0.00 0.00 46.37 2.73
388 389 6.995511 TTTGGAGTTGTGCATAATAGGTAC 57.004 37.500 0.00 0.00 0.00 3.34
389 390 7.342581 TCATTTGGAGTTGTGCATAATAGGTA 58.657 34.615 0.00 0.00 0.00 3.08
390 391 6.186957 TCATTTGGAGTTGTGCATAATAGGT 58.813 36.000 0.00 0.00 0.00 3.08
391 392 6.698008 TCATTTGGAGTTGTGCATAATAGG 57.302 37.500 0.00 0.00 0.00 2.57
392 393 6.039047 AGCTCATTTGGAGTTGTGCATAATAG 59.961 38.462 0.00 0.00 45.88 1.73
393 394 5.887598 AGCTCATTTGGAGTTGTGCATAATA 59.112 36.000 0.00 0.00 45.88 0.98
394 395 4.708421 AGCTCATTTGGAGTTGTGCATAAT 59.292 37.500 0.00 0.00 45.88 1.28
395 396 4.081406 AGCTCATTTGGAGTTGTGCATAA 58.919 39.130 0.00 0.00 45.88 1.90
396 397 3.441222 CAGCTCATTTGGAGTTGTGCATA 59.559 43.478 0.00 0.00 46.35 3.14
397 398 2.230508 CAGCTCATTTGGAGTTGTGCAT 59.769 45.455 0.00 0.00 46.35 3.96
398 399 1.610038 CAGCTCATTTGGAGTTGTGCA 59.390 47.619 0.00 0.00 46.35 4.57
399 400 2.342910 CAGCTCATTTGGAGTTGTGC 57.657 50.000 0.00 0.00 46.35 4.57
403 404 5.464168 CGAATTTTCAGCTCATTTGGAGTT 58.536 37.500 0.00 0.00 45.88 3.01
404 405 4.082571 CCGAATTTTCAGCTCATTTGGAGT 60.083 41.667 5.34 0.00 45.88 3.85
405 406 4.418392 CCGAATTTTCAGCTCATTTGGAG 58.582 43.478 5.34 0.00 46.93 3.86
406 407 3.367292 GCCGAATTTTCAGCTCATTTGGA 60.367 43.478 12.24 0.00 34.43 3.53
407 408 2.925563 GCCGAATTTTCAGCTCATTTGG 59.074 45.455 6.44 6.44 35.31 3.28
408 409 3.841643 AGCCGAATTTTCAGCTCATTTG 58.158 40.909 0.00 0.00 36.22 2.32
409 410 4.525912 AAGCCGAATTTTCAGCTCATTT 57.474 36.364 1.73 0.00 39.87 2.32
410 411 4.525912 AAAGCCGAATTTTCAGCTCATT 57.474 36.364 1.73 0.00 39.87 2.57
411 412 4.219288 AGAAAAGCCGAATTTTCAGCTCAT 59.781 37.500 20.15 0.00 46.81 2.90
412 413 3.569701 AGAAAAGCCGAATTTTCAGCTCA 59.430 39.130 20.15 0.00 46.81 4.26
413 414 3.916776 CAGAAAAGCCGAATTTTCAGCTC 59.083 43.478 20.15 2.08 46.81 4.09
414 415 3.569701 TCAGAAAAGCCGAATTTTCAGCT 59.430 39.130 20.15 0.00 46.81 4.24
415 416 3.900941 TCAGAAAAGCCGAATTTTCAGC 58.099 40.909 20.15 0.00 46.81 4.26
416 417 4.325472 GCATCAGAAAAGCCGAATTTTCAG 59.675 41.667 20.15 14.96 46.81 3.02
417 418 4.236935 GCATCAGAAAAGCCGAATTTTCA 58.763 39.130 20.15 7.33 46.81 2.69
418 419 3.301642 CGCATCAGAAAAGCCGAATTTTC 59.698 43.478 13.85 13.85 45.45 2.29
419 420 3.244976 CGCATCAGAAAAGCCGAATTTT 58.755 40.909 0.00 0.00 35.12 1.82
420 421 2.867429 CGCATCAGAAAAGCCGAATTT 58.133 42.857 0.00 0.00 0.00 1.82
421 422 1.468054 GCGCATCAGAAAAGCCGAATT 60.468 47.619 0.30 0.00 0.00 2.17
422 423 0.099436 GCGCATCAGAAAAGCCGAAT 59.901 50.000 0.30 0.00 0.00 3.34
423 424 0.955428 AGCGCATCAGAAAAGCCGAA 60.955 50.000 11.47 0.00 0.00 4.30
424 425 1.375908 AGCGCATCAGAAAAGCCGA 60.376 52.632 11.47 0.00 0.00 5.54
425 426 1.226211 CAGCGCATCAGAAAAGCCG 60.226 57.895 11.47 0.00 0.00 5.52
426 427 0.098376 CTCAGCGCATCAGAAAAGCC 59.902 55.000 11.47 0.00 0.00 4.35
427 428 0.801251 ACTCAGCGCATCAGAAAAGC 59.199 50.000 11.47 0.00 0.00 3.51
428 429 2.344950 AGACTCAGCGCATCAGAAAAG 58.655 47.619 11.47 0.00 0.00 2.27
429 430 2.462456 AGACTCAGCGCATCAGAAAA 57.538 45.000 11.47 0.00 0.00 2.29
430 431 2.462456 AAGACTCAGCGCATCAGAAA 57.538 45.000 11.47 0.00 0.00 2.52
431 432 2.462456 AAAGACTCAGCGCATCAGAA 57.538 45.000 11.47 0.00 0.00 3.02
432 433 3.451526 CATAAAGACTCAGCGCATCAGA 58.548 45.455 11.47 0.32 0.00 3.27
433 434 2.543012 CCATAAAGACTCAGCGCATCAG 59.457 50.000 11.47 4.20 0.00 2.90
434 435 2.093500 ACCATAAAGACTCAGCGCATCA 60.093 45.455 11.47 0.00 0.00 3.07
435 436 2.541762 GACCATAAAGACTCAGCGCATC 59.458 50.000 11.47 0.90 0.00 3.91
436 437 2.169352 AGACCATAAAGACTCAGCGCAT 59.831 45.455 11.47 0.00 0.00 4.73
437 438 1.550524 AGACCATAAAGACTCAGCGCA 59.449 47.619 11.47 0.00 0.00 6.09
438 439 2.301577 AGACCATAAAGACTCAGCGC 57.698 50.000 0.00 0.00 0.00 5.92
439 440 3.799420 GCTAAGACCATAAAGACTCAGCG 59.201 47.826 0.00 0.00 0.00 5.18
440 441 4.568760 GTGCTAAGACCATAAAGACTCAGC 59.431 45.833 0.00 0.00 0.00 4.26
441 442 4.800993 CGTGCTAAGACCATAAAGACTCAG 59.199 45.833 0.00 0.00 0.00 3.35
442 443 4.461431 TCGTGCTAAGACCATAAAGACTCA 59.539 41.667 0.00 0.00 0.00 3.41
443 444 4.799428 GTCGTGCTAAGACCATAAAGACTC 59.201 45.833 0.00 0.00 32.78 3.36
444 445 4.674623 CGTCGTGCTAAGACCATAAAGACT 60.675 45.833 0.00 0.00 35.33 3.24
445 446 3.546670 CGTCGTGCTAAGACCATAAAGAC 59.453 47.826 0.00 0.00 35.33 3.01
446 447 3.428452 CCGTCGTGCTAAGACCATAAAGA 60.428 47.826 0.00 0.00 35.33 2.52
447 448 2.858344 CCGTCGTGCTAAGACCATAAAG 59.142 50.000 0.00 0.00 35.33 1.85
448 449 2.883574 CCGTCGTGCTAAGACCATAAA 58.116 47.619 0.00 0.00 35.33 1.40
449 450 1.470285 GCCGTCGTGCTAAGACCATAA 60.470 52.381 0.00 0.00 35.33 1.90
450 451 0.101759 GCCGTCGTGCTAAGACCATA 59.898 55.000 0.00 0.00 35.33 2.74
451 452 1.153628 GCCGTCGTGCTAAGACCAT 60.154 57.895 0.00 0.00 35.33 3.55
452 453 1.812686 AAGCCGTCGTGCTAAGACCA 61.813 55.000 8.36 0.00 41.80 4.02
453 454 0.669625 AAAGCCGTCGTGCTAAGACC 60.670 55.000 8.36 0.00 41.80 3.85
454 455 1.126296 GAAAAGCCGTCGTGCTAAGAC 59.874 52.381 8.36 0.00 41.80 3.01
455 456 1.425412 GAAAAGCCGTCGTGCTAAGA 58.575 50.000 8.36 0.00 41.80 2.10
456 457 0.093026 CGAAAAGCCGTCGTGCTAAG 59.907 55.000 8.36 0.00 41.80 2.18
457 458 1.286354 CCGAAAAGCCGTCGTGCTAA 61.286 55.000 8.36 0.00 41.80 3.09
458 459 1.735198 CCGAAAAGCCGTCGTGCTA 60.735 57.895 8.36 0.00 41.80 3.49
459 460 3.041940 CCGAAAAGCCGTCGTGCT 61.042 61.111 2.81 2.81 45.43 4.40
460 461 4.736631 GCCGAAAAGCCGTCGTGC 62.737 66.667 0.00 0.00 36.77 5.34
461 462 3.041940 AGCCGAAAAGCCGTCGTG 61.042 61.111 0.00 0.00 36.77 4.35
462 463 3.041940 CAGCCGAAAAGCCGTCGT 61.042 61.111 0.00 0.00 36.77 4.34
463 464 3.011760 GACAGCCGAAAAGCCGTCG 62.012 63.158 0.00 0.00 38.24 5.12
464 465 1.668151 AGACAGCCGAAAAGCCGTC 60.668 57.895 0.00 0.00 39.91 4.79
465 466 1.961277 CAGACAGCCGAAAAGCCGT 60.961 57.895 0.00 0.00 0.00 5.68
466 467 2.863153 CAGACAGCCGAAAAGCCG 59.137 61.111 0.00 0.00 0.00 5.52
467 468 2.563427 GCAGACAGCCGAAAAGCC 59.437 61.111 0.00 0.00 37.23 4.35
490 491 0.729140 GTCATCGCCCGCAAACTTTG 60.729 55.000 0.00 0.00 0.00 2.77
491 492 1.579429 GTCATCGCCCGCAAACTTT 59.421 52.632 0.00 0.00 0.00 2.66
492 493 2.677003 CGTCATCGCCCGCAAACTT 61.677 57.895 0.00 0.00 0.00 2.66
493 494 3.118454 CGTCATCGCCCGCAAACT 61.118 61.111 0.00 0.00 0.00 2.66
494 495 3.115892 TCGTCATCGCCCGCAAAC 61.116 61.111 0.00 0.00 36.96 2.93
495 496 3.115892 GTCGTCATCGCCCGCAAA 61.116 61.111 0.00 0.00 36.96 3.68
496 497 4.365505 TGTCGTCATCGCCCGCAA 62.366 61.111 0.00 0.00 36.96 4.85
497 498 4.794439 CTGTCGTCATCGCCCGCA 62.794 66.667 0.00 0.00 36.96 5.69
509 510 4.099924 CGAAAAAGCACGCTGTCG 57.900 55.556 0.00 0.00 42.43 4.35
516 517 2.234187 CTAAAGCGAGCGAAAAAGCAC 58.766 47.619 0.00 0.00 40.15 4.40
517 518 1.871039 ACTAAAGCGAGCGAAAAAGCA 59.129 42.857 0.00 0.00 40.15 3.91
518 519 2.234187 CACTAAAGCGAGCGAAAAAGC 58.766 47.619 0.00 0.00 37.41 3.51
519 520 2.096218 AGCACTAAAGCGAGCGAAAAAG 60.096 45.455 0.00 0.00 40.15 2.27
520 521 1.871039 AGCACTAAAGCGAGCGAAAAA 59.129 42.857 0.00 0.00 40.15 1.94
521 522 1.508632 AGCACTAAAGCGAGCGAAAA 58.491 45.000 0.00 0.00 40.15 2.29
522 523 1.508632 AAGCACTAAAGCGAGCGAAA 58.491 45.000 0.00 0.00 40.15 3.46
523 524 2.357327 TAAGCACTAAAGCGAGCGAA 57.643 45.000 0.00 0.00 40.15 4.70
524 525 2.193447 CATAAGCACTAAAGCGAGCGA 58.807 47.619 0.00 0.00 40.15 4.93
525 526 1.258982 CCATAAGCACTAAAGCGAGCG 59.741 52.381 0.00 0.00 40.15 5.03
526 527 2.280628 ACCATAAGCACTAAAGCGAGC 58.719 47.619 0.00 0.00 40.15 5.03
527 528 2.535984 CGACCATAAGCACTAAAGCGAG 59.464 50.000 0.00 0.00 40.15 5.03
528 529 2.094390 ACGACCATAAGCACTAAAGCGA 60.094 45.455 0.00 0.00 40.15 4.93
529 530 2.268298 ACGACCATAAGCACTAAAGCG 58.732 47.619 0.00 0.00 40.15 4.68
530 531 3.062234 GTGACGACCATAAGCACTAAAGC 59.938 47.826 0.00 0.00 0.00 3.51
531 532 4.495422 AGTGACGACCATAAGCACTAAAG 58.505 43.478 0.00 0.00 37.98 1.85
532 533 4.530710 AGTGACGACCATAAGCACTAAA 57.469 40.909 0.00 0.00 37.98 1.85
533 534 4.097437 CCTAGTGACGACCATAAGCACTAA 59.903 45.833 0.00 0.00 40.36 2.24
534 535 3.630769 CCTAGTGACGACCATAAGCACTA 59.369 47.826 0.00 0.00 40.08 2.74
535 536 2.427453 CCTAGTGACGACCATAAGCACT 59.573 50.000 0.00 0.00 42.04 4.40
536 537 2.426024 TCCTAGTGACGACCATAAGCAC 59.574 50.000 0.00 0.00 0.00 4.40
537 538 2.688446 CTCCTAGTGACGACCATAAGCA 59.312 50.000 0.00 0.00 0.00 3.91
538 539 2.034812 CCTCCTAGTGACGACCATAAGC 59.965 54.545 0.00 0.00 0.00 3.09
539 540 2.034812 GCCTCCTAGTGACGACCATAAG 59.965 54.545 0.00 0.00 0.00 1.73
540 541 2.029623 GCCTCCTAGTGACGACCATAA 58.970 52.381 0.00 0.00 0.00 1.90
541 542 1.214673 AGCCTCCTAGTGACGACCATA 59.785 52.381 0.00 0.00 0.00 2.74
542 543 0.033011 AGCCTCCTAGTGACGACCAT 60.033 55.000 0.00 0.00 0.00 3.55
543 544 0.622136 TAGCCTCCTAGTGACGACCA 59.378 55.000 0.00 0.00 0.00 4.02
544 545 1.984066 ATAGCCTCCTAGTGACGACC 58.016 55.000 0.00 0.00 0.00 4.79
545 546 4.005487 TCTATAGCCTCCTAGTGACGAC 57.995 50.000 0.00 0.00 0.00 4.34
546 547 4.532916 AGATCTATAGCCTCCTAGTGACGA 59.467 45.833 0.00 0.00 0.00 4.20
547 548 4.634004 CAGATCTATAGCCTCCTAGTGACG 59.366 50.000 0.00 0.00 0.00 4.35
548 549 4.947388 CCAGATCTATAGCCTCCTAGTGAC 59.053 50.000 0.00 0.00 0.00 3.67
549 550 4.852697 TCCAGATCTATAGCCTCCTAGTGA 59.147 45.833 0.00 0.00 0.00 3.41
550 551 5.186256 TCCAGATCTATAGCCTCCTAGTG 57.814 47.826 0.00 0.00 0.00 2.74
551 552 7.721537 ATATCCAGATCTATAGCCTCCTAGT 57.278 40.000 0.00 0.00 0.00 2.57
552 553 8.890472 ACTATATCCAGATCTATAGCCTCCTAG 58.110 40.741 9.31 0.86 33.20 3.02
553 554 8.822246 ACTATATCCAGATCTATAGCCTCCTA 57.178 38.462 9.31 0.00 33.20 2.94
554 555 7.721537 ACTATATCCAGATCTATAGCCTCCT 57.278 40.000 9.31 0.00 33.20 3.69
555 556 8.001875 TGAACTATATCCAGATCTATAGCCTCC 58.998 40.741 9.31 0.36 33.20 4.30
556 557 8.988546 TGAACTATATCCAGATCTATAGCCTC 57.011 38.462 9.31 7.59 33.20 4.70
557 558 9.365906 CATGAACTATATCCAGATCTATAGCCT 57.634 37.037 9.31 0.00 33.20 4.58
558 559 8.584157 CCATGAACTATATCCAGATCTATAGCC 58.416 40.741 9.31 4.25 33.20 3.93
559 560 9.142014 ACCATGAACTATATCCAGATCTATAGC 57.858 37.037 9.31 0.00 33.20 2.97
564 565 8.964533 AAGTACCATGAACTATATCCAGATCT 57.035 34.615 0.00 0.00 0.00 2.75
565 566 8.807118 TGAAGTACCATGAACTATATCCAGATC 58.193 37.037 0.00 0.00 0.00 2.75
566 567 8.727100 TGAAGTACCATGAACTATATCCAGAT 57.273 34.615 0.00 0.00 0.00 2.90
567 568 8.421784 GTTGAAGTACCATGAACTATATCCAGA 58.578 37.037 0.00 0.00 0.00 3.86
568 569 8.204160 TGTTGAAGTACCATGAACTATATCCAG 58.796 37.037 0.00 0.00 0.00 3.86
569 570 8.084985 TGTTGAAGTACCATGAACTATATCCA 57.915 34.615 0.00 0.00 0.00 3.41
570 571 8.204836 ACTGTTGAAGTACCATGAACTATATCC 58.795 37.037 0.00 0.00 37.36 2.59
586 587 8.951787 TTAAACATGTACAGTACTGTTGAAGT 57.048 30.769 32.15 21.78 41.83 3.01
587 588 9.811655 CATTAAACATGTACAGTACTGTTGAAG 57.188 33.333 32.15 21.19 41.83 3.02
588 589 9.549078 TCATTAAACATGTACAGTACTGTTGAA 57.451 29.630 32.15 18.48 41.83 2.69
589 590 9.549078 TTCATTAAACATGTACAGTACTGTTGA 57.451 29.630 32.15 21.41 41.83 3.18
659 660 5.932303 AGCACATGTCATAACGTAACTTCTT 59.068 36.000 0.00 0.00 0.00 2.52
707 709 1.324736 CTCCTATGCTCGCACGTTTTC 59.675 52.381 0.00 0.00 0.00 2.29
719 727 1.065928 CACGACCCGTCTCCTATGC 59.934 63.158 0.00 0.00 38.32 3.14
900 910 4.514577 AGACGGCGAGGCGGATTG 62.515 66.667 22.28 0.00 33.14 2.67
901 911 3.718210 GAAGACGGCGAGGCGGATT 62.718 63.158 22.28 15.65 33.14 3.01
902 912 4.208686 GAAGACGGCGAGGCGGAT 62.209 66.667 22.28 8.10 33.14 4.18
1029 1039 2.647875 CGAGCATAGCGGAGGGAG 59.352 66.667 0.00 0.00 0.00 4.30
1410 1531 4.143333 ACCCGCATCTCGAACCCG 62.143 66.667 0.00 0.00 41.67 5.28
1509 1630 2.653115 CTGTCGAGCAGCCAGTCA 59.347 61.111 0.00 0.00 38.52 3.41
1677 1798 7.360361 CAAAACTAACACCAGTTATCACCTTC 58.640 38.462 0.00 0.00 39.36 3.46
1689 1810 5.105146 AGCAAACAATCCAAAACTAACACCA 60.105 36.000 0.00 0.00 0.00 4.17
1893 2649 9.630098 GAATTCTCAAAAACTATGAATTCTGCA 57.370 29.630 7.05 0.00 44.28 4.41
1916 2676 7.575720 GCAACCAAGCTACACTGAATTAAGAAT 60.576 37.037 0.00 0.00 0.00 2.40
1998 2886 4.392940 ACTTCTAACAGAAACTGCTGCAT 58.607 39.130 1.31 0.00 39.51 3.96
2022 2914 6.017400 ACCATGCTACATTGAGTCAAAAAG 57.983 37.500 10.14 8.63 0.00 2.27
2053 2945 1.681793 CATGACGACCCGATTCCTAGT 59.318 52.381 0.00 0.00 0.00 2.57
2068 2960 2.358957 TCCTGCAATGTAGCACATGAC 58.641 47.619 0.00 0.00 37.97 3.06
2270 3173 5.687166 AAAGGATCACAATGGCATGAATT 57.313 34.783 0.00 0.00 0.00 2.17
2271 3174 5.395990 GGAAAAGGATCACAATGGCATGAAT 60.396 40.000 0.00 0.00 0.00 2.57
2581 3689 4.653555 GGCAACAAAGGCCGAAAG 57.346 55.556 0.00 0.00 42.39 2.62
2929 4037 3.073650 GCTCCCTCTGTAAATCATCCCAT 59.926 47.826 0.00 0.00 0.00 4.00
3451 4559 1.593196 TGTCAAAGAGCCAACGAAGG 58.407 50.000 0.00 0.00 0.00 3.46
3814 4922 5.065859 CCGTATTATGCAAGGTTGACATTGA 59.934 40.000 12.17 0.00 39.74 2.57
3971 5081 3.391296 ACCCTAAACAGCTTCTCTTGTGA 59.609 43.478 0.00 0.00 0.00 3.58
3974 5084 3.935828 GCTACCCTAAACAGCTTCTCTTG 59.064 47.826 0.00 0.00 32.46 3.02
4021 5131 8.178313 ACATATACGATGTAACTTCTCCATGA 57.822 34.615 0.00 0.00 0.00 3.07
4306 5465 3.016031 TGTGGCAGTGTAAGCATTATGG 58.984 45.455 0.00 0.00 30.46 2.74
4429 5588 4.216257 GCTGTAGCAAATGGTTCAAGAGAA 59.784 41.667 0.00 0.00 41.59 2.87
5153 6312 5.850614 TGAACCTTCTACGCTTCTAGTTTT 58.149 37.500 0.00 0.00 0.00 2.43
5159 6318 2.028930 CACCTGAACCTTCTACGCTTCT 60.029 50.000 0.00 0.00 0.00 2.85
5236 6395 0.324645 ATGAGTTGAATGGGCCACCC 60.325 55.000 9.28 3.81 45.71 4.61
5425 6585 3.368948 GCCTCTCCCAACTTAAGAGACAG 60.369 52.174 10.09 0.00 39.09 3.51
5445 6606 3.454371 TCTAAAGGAGCGATACAAGCC 57.546 47.619 0.00 0.00 34.64 4.35
5446 6607 3.246463 GCTTCTAAAGGAGCGATACAAGC 59.754 47.826 0.00 0.00 0.00 4.01
5447 6608 4.688021 AGCTTCTAAAGGAGCGATACAAG 58.312 43.478 4.61 0.00 0.00 3.16
5502 6663 1.945394 GTTCGAATGGCATCAGCAGAT 59.055 47.619 0.00 0.00 44.61 2.90
5519 6680 7.762382 AGGATCTTGGAACATTTAAATCGTTC 58.238 34.615 22.20 22.20 39.30 3.95
5797 6958 9.237846 GTGAAAAGGTCTCAGAAAAACATAAAG 57.762 33.333 0.00 0.00 0.00 1.85
5803 6964 5.576447 TGGTGAAAAGGTCTCAGAAAAAC 57.424 39.130 0.00 0.00 0.00 2.43
5894 7314 2.755952 AAAAGAGCAAACCCTCACCT 57.244 45.000 0.00 0.00 34.26 4.00
6120 7540 4.272489 TGCAAGTATGAAAATGGGAGAGG 58.728 43.478 0.00 0.00 0.00 3.69
6254 7675 6.263617 GGACAACCAAAAACATACTAGTTCCA 59.736 38.462 0.00 0.00 35.97 3.53
6312 7736 8.585881 GGACAGCTATAAAAGACCTATCATACA 58.414 37.037 0.00 0.00 0.00 2.29
6313 7737 7.755822 CGGACAGCTATAAAAGACCTATCATAC 59.244 40.741 0.00 0.00 0.00 2.39
6319 7743 4.317671 GCGGACAGCTATAAAAGACCTA 57.682 45.455 0.00 0.00 44.04 3.08
6514 7942 3.300590 GCCGCACAAAATCATTTAACTCG 59.699 43.478 0.00 0.00 0.00 4.18
6612 8040 1.067516 GTGTTGTGGCAGTGAAAGCAT 59.932 47.619 0.00 0.00 0.00 3.79
6715 8143 1.847328 CCCAACCACCATAACCTTCC 58.153 55.000 0.00 0.00 0.00 3.46
6806 8234 8.578448 TGATTTGAATGACATAATCCAACTGA 57.422 30.769 6.87 0.00 31.53 3.41
6921 8354 9.733556 CTACTTGGGCACATTTATATACCATTA 57.266 33.333 0.00 0.00 0.00 1.90
6939 8372 4.386867 TCGAAACTAGCATCTACTTGGG 57.613 45.455 0.00 0.00 0.00 4.12
6959 8392 2.498167 AGCACCGCAATCAGGATATTC 58.502 47.619 0.00 0.00 0.00 1.75
6968 8401 2.697431 TGTTGTTTAGCACCGCAATC 57.303 45.000 0.00 0.00 0.00 2.67
6974 8407 9.072294 GTTGTTATATCAATGTTGTTTAGCACC 57.928 33.333 0.00 0.00 0.00 5.01
7019 8453 8.999895 ACCAGTTACAAAGGGATAACTACATAT 58.000 33.333 0.00 0.00 39.15 1.78
7155 8618 8.490355 GCACAACCTTTTCTTTCAATTGAATAG 58.510 33.333 21.10 18.81 33.54 1.73
7157 8620 6.260714 GGCACAACCTTTTCTTTCAATTGAAT 59.739 34.615 21.10 1.34 32.34 2.57
7323 8788 1.885887 TCTTTTGCCCCGTGATTTCAG 59.114 47.619 0.00 0.00 0.00 3.02
7350 8815 1.546029 CAAGGAAAACAAGGGCTAGGC 59.454 52.381 8.00 8.00 0.00 3.93
7446 8912 1.810755 CTTGGGAAAACGTAAGCCTCC 59.189 52.381 0.00 0.00 45.62 4.30
7455 8921 3.575965 CAAGAATCCCTTGGGAAAACG 57.424 47.619 12.93 0.00 46.54 3.60
7559 9028 4.425520 GAGCAACTATTTACAGCTCGTCT 58.574 43.478 0.00 0.00 41.75 4.18
7623 9092 0.249911 ACTGTTTGGGCGTCAGAGAC 60.250 55.000 0.00 0.00 33.93 3.36
7625 9098 2.002586 CATACTGTTTGGGCGTCAGAG 58.997 52.381 0.00 0.00 33.93 3.35
7672 9145 8.663025 CCATAACATGATGATGTAGTAATGCTC 58.337 37.037 0.00 0.00 42.30 4.26
7717 9196 3.038417 CGAGGATTCGCGGCATCC 61.038 66.667 23.45 23.45 40.36 3.51
7890 9393 3.940209 ATTCCTGCGCTTTGAAAATCA 57.060 38.095 9.73 0.00 0.00 2.57
7920 9423 3.992943 TGTACTCCCAAACCTACATGG 57.007 47.619 0.00 0.00 42.93 3.66
7926 9429 4.202673 ACCAAATCATGTACTCCCAAACCT 60.203 41.667 0.00 0.00 0.00 3.50
7927 9430 4.086457 ACCAAATCATGTACTCCCAAACC 58.914 43.478 0.00 0.00 0.00 3.27
7931 9434 4.735369 ACAAACCAAATCATGTACTCCCA 58.265 39.130 0.00 0.00 0.00 4.37
7932 9435 5.722021 AACAAACCAAATCATGTACTCCC 57.278 39.130 0.00 0.00 0.00 4.30
7933 9436 7.206687 TCAAAACAAACCAAATCATGTACTCC 58.793 34.615 0.00 0.00 0.00 3.85
7934 9437 8.816640 ATCAAAACAAACCAAATCATGTACTC 57.183 30.769 0.00 0.00 0.00 2.59
7935 9438 9.044150 CAATCAAAACAAACCAAATCATGTACT 57.956 29.630 0.00 0.00 0.00 2.73
7936 9439 7.798052 GCAATCAAAACAAACCAAATCATGTAC 59.202 33.333 0.00 0.00 0.00 2.90
7991 9494 8.985315 AAAGATTTGCATCCATCATACTTCTA 57.015 30.769 0.00 0.00 0.00 2.10
8043 9803 9.594936 TTTGAATCTTGTAGGGATTTTTCCTAA 57.405 29.630 0.00 0.00 38.47 2.69
8109 9869 7.289084 TGGCTCTAAGGATTTTGGTTAGTTTTT 59.711 33.333 0.00 0.00 0.00 1.94
8113 9873 5.514500 TGGCTCTAAGGATTTTGGTTAGT 57.486 39.130 0.00 0.00 0.00 2.24
8118 9878 4.400567 CCTCTTTGGCTCTAAGGATTTTGG 59.599 45.833 0.00 0.00 0.00 3.28
8119 9879 5.573337 CCTCTTTGGCTCTAAGGATTTTG 57.427 43.478 0.00 0.00 0.00 2.44
8133 9893 3.950395 CTCATTCTTAAGGGCCTCTTTGG 59.050 47.826 6.46 0.00 36.93 3.28
8153 9913 4.748102 TGAAACTCGGTGTTATGTTGACTC 59.252 41.667 0.00 0.00 38.03 3.36
8201 9961 2.820059 ACGATCAGTCAAAGAGCACA 57.180 45.000 0.00 0.00 0.00 4.57
8205 9965 5.025190 CGAGAGTAACGATCAGTCAAAGAG 58.975 45.833 0.00 0.00 0.00 2.85
8227 9987 5.994054 ACAATCAATAACATCCTCTCCATCG 59.006 40.000 0.00 0.00 0.00 3.84
8233 9993 5.888161 GGGTTCACAATCAATAACATCCTCT 59.112 40.000 0.00 0.00 0.00 3.69
8291 10054 8.618702 TGTATAATAGTTTGGTTTTCCGTGAA 57.381 30.769 0.00 0.00 44.36 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.