Multiple sequence alignment - TraesCS4D01G299000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G299000 chr4D 100.000 6330 0 0 1 6330 468262044 468268373 0.000000e+00 11690.0
1 TraesCS4D01G299000 chr4B 93.859 4543 171 40 687 5189 586575528 586580002 0.000000e+00 6745.0
2 TraesCS4D01G299000 chr4B 89.116 441 28 10 5195 5617 586580044 586580482 1.210000e-146 531.0
3 TraesCS4D01G299000 chr4B 83.967 605 39 18 82 673 586574914 586575473 1.560000e-145 527.0
4 TraesCS4D01G299000 chr4B 91.946 149 11 1 5752 5899 586580498 586580646 2.310000e-49 207.0
5 TraesCS4D01G299000 chr4A 94.875 4332 175 25 875 5185 3139637 3135332 0.000000e+00 6726.0
6 TraesCS4D01G299000 chr4A 89.446 379 26 8 5195 5561 3135287 3134911 3.460000e-127 466.0
7 TraesCS4D01G299000 chr4A 82.039 206 22 7 5915 6115 3134259 3134064 1.830000e-35 161.0
8 TraesCS4D01G299000 chr4A 93.458 107 7 0 80 186 3140418 3140312 6.570000e-35 159.0
9 TraesCS4D01G299000 chr4A 93.333 75 4 1 5557 5630 3134623 3134549 6.710000e-20 110.0
10 TraesCS4D01G299000 chr3B 79.319 382 56 13 3760 4136 628858991 628859354 4.900000e-61 246.0
11 TraesCS4D01G299000 chr3B 90.909 44 4 0 3200 3243 78521019 78521062 6.850000e-05 60.2
12 TraesCS4D01G299000 chr2B 76.056 284 41 16 3760 4017 546656843 546656561 8.620000e-24 122.0
13 TraesCS4D01G299000 chr5D 95.238 42 1 1 3196 3237 11305324 11305364 1.470000e-06 65.8
14 TraesCS4D01G299000 chr5B 100.000 34 0 0 3196 3229 575975703 575975736 5.300000e-06 63.9
15 TraesCS4D01G299000 chr3A 100.000 34 0 0 3196 3229 130843898 130843931 5.300000e-06 63.9
16 TraesCS4D01G299000 chr3D 97.222 36 1 0 3197 3232 135376567 135376532 1.910000e-05 62.1
17 TraesCS4D01G299000 chr2D 87.273 55 6 1 3176 3229 363977882 363977936 1.910000e-05 62.1
18 TraesCS4D01G299000 chr7D 90.909 44 2 2 3200 3243 488790273 488790232 2.460000e-04 58.4
19 TraesCS4D01G299000 chr7A 90.909 44 2 2 3200 3243 556168487 556168446 2.460000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G299000 chr4D 468262044 468268373 6329 False 11690.0 11690 100.0000 1 6330 1 chr4D.!!$F1 6329
1 TraesCS4D01G299000 chr4B 586574914 586580646 5732 False 2002.5 6745 89.7220 82 5899 4 chr4B.!!$F1 5817
2 TraesCS4D01G299000 chr4A 3134064 3140418 6354 True 1524.4 6726 90.6302 80 6115 5 chr4A.!!$R1 6035

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
419 440 0.033109 GCTTTACCCTGCCATTCCCT 60.033 55.000 0.00 0.00 0.00 4.20 F
735 858 0.106708 TTGATGATACGGCTGCCCTC 59.893 55.000 14.12 8.28 0.00 4.30 F
1107 1249 0.107263 TCACAAGCAGCAGTGTCCAA 60.107 50.000 15.24 0.00 37.07 3.53 F
1346 1489 1.203187 AGGCCTCCACTAGAGAACACA 60.203 52.381 0.00 0.00 46.50 3.72 F
2175 2356 1.878953 AGCCTGGAAGTTTGTACACG 58.121 50.000 0.00 0.00 0.00 4.49 F
3714 3907 1.070289 GAACTGAACCCTGACGGAACT 59.930 52.381 0.00 0.00 34.64 3.01 F
4481 4674 3.044059 GCATGTGCCGCAGAAGGAC 62.044 63.158 0.00 0.00 34.31 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1296 1439 2.021355 TGGCAAACAACCTGCAAAAG 57.979 45.000 0.00 0.0 41.78 2.27 R
2378 2567 3.022607 AGCTCAGCAAACAAATTCTGC 57.977 42.857 0.00 0.0 36.29 4.26 R
2968 3158 3.018856 TGACAATAGAAGGCAGCAATGG 58.981 45.455 0.00 0.0 0.00 3.16 R
3195 3385 5.163953 CGATCCATATTAATTGACGCTGGTC 60.164 44.000 0.00 0.0 43.71 4.02 R
4020 4213 1.887344 AAATTCATGGGGCACACGGC 61.887 55.000 0.00 0.0 43.74 5.68 R
4988 5192 0.037326 CCTGTAACAGCGAGCCAGAA 60.037 55.000 0.00 0.0 0.00 3.02 R
5650 6208 0.041090 GGGCCATTCCTCCTTTTCCA 59.959 55.000 4.39 0.0 34.39 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.813908 CGCCCTCGTTGGTGCTAC 60.814 66.667 0.00 0.00 32.24 3.58
22 23 2.813908 GCCCTCGTTGGTGCTACG 60.814 66.667 0.00 0.00 40.23 3.51
23 24 2.967397 CCCTCGTTGGTGCTACGA 59.033 61.111 0.00 0.00 44.88 3.43
27 28 2.936928 TCGTTGGTGCTACGAGAGA 58.063 52.632 0.00 0.00 42.51 3.10
28 29 1.241165 TCGTTGGTGCTACGAGAGAA 58.759 50.000 0.00 0.00 42.51 2.87
29 30 1.816835 TCGTTGGTGCTACGAGAGAAT 59.183 47.619 0.00 0.00 42.51 2.40
30 31 2.230508 TCGTTGGTGCTACGAGAGAATT 59.769 45.455 0.00 0.00 42.51 2.17
31 32 2.599082 CGTTGGTGCTACGAGAGAATTC 59.401 50.000 0.00 0.00 41.33 2.17
32 33 3.673594 CGTTGGTGCTACGAGAGAATTCT 60.674 47.826 7.95 7.95 41.33 2.40
33 34 3.784701 TGGTGCTACGAGAGAATTCTC 57.215 47.619 25.20 25.20 45.27 2.87
43 44 1.646189 GAGAATTCTCGTGGACAGCC 58.354 55.000 19.31 0.00 32.78 4.85
44 45 0.976641 AGAATTCTCGTGGACAGCCA 59.023 50.000 0.88 0.00 43.47 4.75
53 54 2.499214 TGGACAGCCACCAAACAAC 58.501 52.632 0.00 0.00 39.92 3.32
54 55 1.040339 TGGACAGCCACCAAACAACC 61.040 55.000 0.00 0.00 39.92 3.77
55 56 1.040339 GGACAGCCACCAAACAACCA 61.040 55.000 0.00 0.00 0.00 3.67
56 57 1.039856 GACAGCCACCAAACAACCAT 58.960 50.000 0.00 0.00 0.00 3.55
57 58 0.752054 ACAGCCACCAAACAACCATG 59.248 50.000 0.00 0.00 0.00 3.66
58 59 0.752054 CAGCCACCAAACAACCATGT 59.248 50.000 0.00 0.00 43.14 3.21
71 72 3.040965 CCATGTTGGTGCAACTCCT 57.959 52.632 2.04 0.00 43.85 3.69
72 73 0.599558 CCATGTTGGTGCAACTCCTG 59.400 55.000 2.04 0.00 43.85 3.86
93 94 3.686760 GCCAAAGAAGACAGGCCC 58.313 61.111 0.00 0.00 41.25 5.80
130 131 1.373748 CCGCGGTATATTCCACGGG 60.374 63.158 19.50 8.47 45.83 5.28
148 149 1.623973 GGAAACGTAGAGCGCACCAC 61.624 60.000 11.47 0.55 46.11 4.16
192 193 0.809241 CACATCTTCCTCGCCTCAGC 60.809 60.000 0.00 0.00 0.00 4.26
215 217 1.304464 CCCCCAGCTTTGTCCCTTC 60.304 63.158 0.00 0.00 0.00 3.46
246 248 4.952102 GCCAGGCCAAACCCCCAA 62.952 66.667 5.01 0.00 40.58 4.12
282 284 4.886925 CCGCGCCGTGCATAAAGC 62.887 66.667 0.00 0.00 46.97 3.51
283 285 3.864686 CGCGCCGTGCATAAAGCT 61.865 61.111 0.00 0.00 46.97 3.74
284 286 2.023320 GCGCCGTGCATAAAGCTC 59.977 61.111 0.00 0.00 45.94 4.09
285 287 2.709475 CGCCGTGCATAAAGCTCC 59.291 61.111 0.00 0.00 45.94 4.70
286 288 2.823829 CGCCGTGCATAAAGCTCCC 61.824 63.158 0.00 0.00 45.94 4.30
287 289 2.481471 GCCGTGCATAAAGCTCCCC 61.481 63.158 0.00 0.00 45.94 4.81
288 290 1.823899 CCGTGCATAAAGCTCCCCC 60.824 63.158 0.00 0.00 45.94 5.40
289 291 2.180204 CGTGCATAAAGCTCCCCCG 61.180 63.158 0.00 0.00 45.94 5.73
290 292 1.077716 GTGCATAAAGCTCCCCCGT 60.078 57.895 0.00 0.00 45.94 5.28
291 293 1.077787 TGCATAAAGCTCCCCCGTG 60.078 57.895 0.00 0.00 45.94 4.94
292 294 2.481471 GCATAAAGCTCCCCCGTGC 61.481 63.158 0.00 0.00 41.15 5.34
293 295 1.823899 CATAAAGCTCCCCCGTGCC 60.824 63.158 0.00 0.00 0.00 5.01
294 296 3.056754 ATAAAGCTCCCCCGTGCCC 62.057 63.158 0.00 0.00 0.00 5.36
411 432 3.134127 CAGGCGGCTTTACCCTGC 61.134 66.667 9.66 0.00 39.64 4.85
419 440 0.033109 GCTTTACCCTGCCATTCCCT 60.033 55.000 0.00 0.00 0.00 4.20
457 478 2.358984 TTCCCCCGTTTAGCGCAC 60.359 61.111 11.47 0.00 39.71 5.34
532 562 2.450476 CCTGGAGTTGGGGATTTTCTG 58.550 52.381 0.00 0.00 0.00 3.02
552 582 9.703677 TTTTCTGGGGGTTTATTATACTTTAGG 57.296 33.333 0.00 0.00 0.00 2.69
555 585 8.496916 TCTGGGGGTTTATTATACTTTAGGTTC 58.503 37.037 0.00 0.00 0.00 3.62
567 599 3.181478 ACTTTAGGTTCGATTAGAGGCGG 60.181 47.826 0.00 0.00 0.00 6.13
613 645 1.684734 GGCCCTAGACTTCACCGGA 60.685 63.158 9.46 0.00 0.00 5.14
614 646 1.049289 GGCCCTAGACTTCACCGGAT 61.049 60.000 9.46 0.00 0.00 4.18
674 711 2.305928 CCCATTCGCCCATTTCATGTA 58.694 47.619 0.00 0.00 0.00 2.29
677 714 4.522405 CCCATTCGCCCATTTCATGTATTA 59.478 41.667 0.00 0.00 0.00 0.98
679 716 5.335897 CCATTCGCCCATTTCATGTATTAGG 60.336 44.000 0.00 0.00 0.00 2.69
680 717 4.698201 TCGCCCATTTCATGTATTAGGA 57.302 40.909 0.00 0.00 0.00 2.94
681 718 5.042463 TCGCCCATTTCATGTATTAGGAA 57.958 39.130 0.00 0.00 0.00 3.36
712 835 4.313277 TCGTTTGGAGCTCTCATATCTG 57.687 45.455 14.64 0.00 0.00 2.90
721 844 4.633175 AGCTCTCATATCTGCAGTTGATG 58.367 43.478 14.67 14.84 0.00 3.07
726 849 6.385033 TCTCATATCTGCAGTTGATGATACG 58.615 40.000 20.47 13.28 0.00 3.06
735 858 0.106708 TTGATGATACGGCTGCCCTC 59.893 55.000 14.12 8.28 0.00 4.30
754 877 5.423886 CCCTCATCCTTTTCTCTACACTTC 58.576 45.833 0.00 0.00 0.00 3.01
772 895 7.673641 ACACTTCTATTCTCATCTCCTCAAT 57.326 36.000 0.00 0.00 0.00 2.57
778 901 9.964354 TTCTATTCTCATCTCCTCAATTGAAAA 57.036 29.630 9.88 0.00 0.00 2.29
792 915 3.478857 TTGAAAAACCGCTCCACTCTA 57.521 42.857 0.00 0.00 0.00 2.43
799 922 2.119495 ACCGCTCCACTCTAAATGGAT 58.881 47.619 0.00 0.00 45.27 3.41
800 923 2.158900 ACCGCTCCACTCTAAATGGATG 60.159 50.000 0.00 0.00 45.27 3.51
801 924 2.487934 CGCTCCACTCTAAATGGATGG 58.512 52.381 0.00 0.00 45.27 3.51
805 928 4.759183 GCTCCACTCTAAATGGATGGAATC 59.241 45.833 0.00 0.00 45.27 2.52
849 987 2.778299 TGTGACTTGTTATGGCAGTCC 58.222 47.619 0.00 0.00 0.00 3.85
860 998 0.461870 TGGCAGTCCGAATCGATTGG 60.462 55.000 16.96 14.60 34.14 3.16
872 1010 4.651994 GAATCGATTGGCTTGTTACACAG 58.348 43.478 16.96 0.00 0.00 3.66
877 1019 2.051334 TGGCTTGTTACACAGCTTGT 57.949 45.000 15.17 6.74 42.84 3.16
887 1029 5.347635 TGTTACACAGCTTGTCTTAATAGCG 59.652 40.000 5.04 0.00 39.91 4.26
906 1048 1.751563 GAGGGCCTCATGAGCTACC 59.248 63.158 28.55 16.96 0.00 3.18
962 1104 1.745087 CTGCGCCTGTTGGTTGAATAT 59.255 47.619 4.18 0.00 35.27 1.28
963 1105 2.942376 CTGCGCCTGTTGGTTGAATATA 59.058 45.455 4.18 0.00 35.27 0.86
1005 1147 4.627467 CAGTGTACTTGCTTCAGTATGGAC 59.373 45.833 0.00 0.00 36.16 4.02
1009 1151 2.002586 CTTGCTTCAGTATGGACACCG 58.997 52.381 0.00 0.00 36.16 4.94
1014 1156 0.902984 TCAGTATGGACACCGGCTGT 60.903 55.000 0.00 5.19 36.16 4.40
1020 1162 2.961622 ATGGACACCGGCTGTCTATCG 61.962 57.143 25.91 0.55 45.50 2.92
1041 1183 3.243535 CGTCTATGAACATAGCTGGAGCA 60.244 47.826 14.69 0.00 45.16 4.26
1065 1207 4.102035 GCAAGTAAGATCTTTTGCTGGG 57.898 45.455 26.78 14.74 41.89 4.45
1107 1249 0.107263 TCACAAGCAGCAGTGTCCAA 60.107 50.000 15.24 0.00 37.07 3.53
1122 1264 4.515567 AGTGTCCAAGCACTAAAAACTAGC 59.484 41.667 0.00 0.00 46.68 3.42
1136 1278 1.760192 ACTAGCCATCGTACGACCTT 58.240 50.000 22.14 9.22 0.00 3.50
1137 1279 2.097825 ACTAGCCATCGTACGACCTTT 58.902 47.619 22.14 9.59 0.00 3.11
1138 1280 3.282021 ACTAGCCATCGTACGACCTTTA 58.718 45.455 22.14 10.22 0.00 1.85
1139 1281 2.865343 AGCCATCGTACGACCTTTAG 57.135 50.000 22.14 6.87 0.00 1.85
1140 1282 2.097825 AGCCATCGTACGACCTTTAGT 58.902 47.619 22.14 0.00 0.00 2.24
1141 1283 2.494870 AGCCATCGTACGACCTTTAGTT 59.505 45.455 22.14 0.00 0.00 2.24
1142 1284 2.856557 GCCATCGTACGACCTTTAGTTC 59.143 50.000 22.14 0.00 0.00 3.01
1143 1285 3.103738 CCATCGTACGACCTTTAGTTCG 58.896 50.000 22.14 0.00 33.50 3.95
1144 1286 3.181507 CCATCGTACGACCTTTAGTTCGA 60.182 47.826 22.14 0.00 42.44 3.71
1145 1287 3.455619 TCGTACGACCTTTAGTTCGAC 57.544 47.619 15.28 0.00 35.77 4.20
1146 1288 3.067106 TCGTACGACCTTTAGTTCGACT 58.933 45.455 15.28 0.00 35.77 4.18
1147 1289 3.498397 TCGTACGACCTTTAGTTCGACTT 59.502 43.478 15.28 0.00 35.77 3.01
1148 1290 3.842984 CGTACGACCTTTAGTTCGACTTC 59.157 47.826 10.44 0.00 33.95 3.01
1149 1291 3.294816 ACGACCTTTAGTTCGACTTCC 57.705 47.619 3.66 0.00 0.00 3.46
1150 1292 2.029560 ACGACCTTTAGTTCGACTTCCC 60.030 50.000 3.66 0.00 0.00 3.97
1151 1293 2.673326 CGACCTTTAGTTCGACTTCCCC 60.673 54.545 0.00 0.00 0.00 4.81
1169 1311 3.204382 TCCCCTGGCTTAAGGAATAAAGG 59.796 47.826 4.29 0.00 40.02 3.11
1182 1324 6.062258 AGGAATAAAGGAAAAGGATCACGA 57.938 37.500 0.00 0.00 0.00 4.35
1209 1351 1.728971 CTTCGTGCTCTGCAGGTTAAG 59.271 52.381 15.13 4.69 43.65 1.85
1254 1397 6.354039 TCGGAAAAGCCTATTCGTTATTTC 57.646 37.500 0.00 0.00 0.00 2.17
1270 1413 6.212589 TCGTTATTTCATCTCCCCATAGCATA 59.787 38.462 0.00 0.00 0.00 3.14
1271 1414 7.050377 CGTTATTTCATCTCCCCATAGCATAT 58.950 38.462 0.00 0.00 0.00 1.78
1276 1419 6.305272 TCATCTCCCCATAGCATATTTCTC 57.695 41.667 0.00 0.00 0.00 2.87
1277 1420 5.786975 TCATCTCCCCATAGCATATTTCTCA 59.213 40.000 0.00 0.00 0.00 3.27
1279 1422 6.058553 TCTCCCCATAGCATATTTCTCATG 57.941 41.667 0.00 0.00 0.00 3.07
1295 1438 7.903995 TTTCTCATGAAATAATTGTTTGCCC 57.096 32.000 4.76 0.00 37.27 5.36
1296 1439 5.976458 TCTCATGAAATAATTGTTTGCCCC 58.024 37.500 4.76 0.00 0.00 5.80
1297 1440 5.721000 TCTCATGAAATAATTGTTTGCCCCT 59.279 36.000 4.76 0.00 0.00 4.79
1346 1489 1.203187 AGGCCTCCACTAGAGAACACA 60.203 52.381 0.00 0.00 46.50 3.72
1851 2029 3.584733 AAGCTCTGGTTCTGGTTCTTT 57.415 42.857 0.00 0.00 0.00 2.52
1864 2042 5.368989 TCTGGTTCTTTGAGGTTCTCTTTC 58.631 41.667 0.00 0.00 0.00 2.62
2071 2249 7.931046 TCTACTAGGTGGGCCTTATTTTAAAA 58.069 34.615 4.53 2.51 44.18 1.52
2175 2356 1.878953 AGCCTGGAAGTTTGTACACG 58.121 50.000 0.00 0.00 0.00 4.49
2189 2370 6.649141 AGTTTGTACACGAACATCACATACAT 59.351 34.615 13.59 0.00 41.57 2.29
2248 2429 6.760770 TGGCTTGGTTGAATAGTTTCTTTTTG 59.239 34.615 0.00 0.00 32.78 2.44
2301 2490 8.928448 TCTCTTTCCTTCTAATAGCATGTGTAT 58.072 33.333 0.00 0.00 0.00 2.29
2340 2529 9.923143 TCTGTGCATATATGTAAGTATGTAACC 57.077 33.333 14.14 0.00 32.27 2.85
2341 2530 9.705290 CTGTGCATATATGTAAGTATGTAACCA 57.295 33.333 14.14 0.00 32.27 3.67
2538 2727 5.072736 GGTAAGGTTATACATAGCCCTGGTT 59.927 44.000 0.00 0.00 34.54 3.67
2906 3096 4.388773 TGTGTCATTTAGATTCGTCACTGC 59.611 41.667 0.00 0.00 0.00 4.40
2946 3136 4.945543 TCTCTATGAGGCTACGTTGTAACA 59.054 41.667 0.00 0.00 0.00 2.41
2981 3171 2.026641 TGCTAATCCATTGCTGCCTTC 58.973 47.619 0.00 0.00 0.00 3.46
3130 3320 3.733337 AGTGAGCAAACGAAGAGAATGT 58.267 40.909 0.00 0.00 0.00 2.71
3218 3408 5.700832 TGACCAGCGTCAATTAATATGGATC 59.299 40.000 0.00 0.00 46.09 3.36
3221 3411 4.929211 CAGCGTCAATTAATATGGATCGGA 59.071 41.667 0.00 0.00 0.00 4.55
3445 3638 5.131809 ACTTCATTTCCTCTATTCCTCCTGG 59.868 44.000 0.00 0.00 0.00 4.45
3502 3695 8.504005 ACCTTTAGAAGATACAAACATTCGTTG 58.496 33.333 0.00 0.00 34.86 4.10
3520 3713 4.212425 TCGTTGACACAATCACACCATAAC 59.788 41.667 0.00 0.00 36.92 1.89
3529 3722 5.992829 ACAATCACACCATAACGACAACTTA 59.007 36.000 0.00 0.00 0.00 2.24
3714 3907 1.070289 GAACTGAACCCTGACGGAACT 59.930 52.381 0.00 0.00 34.64 3.01
3770 3963 8.407832 TCAAATAACTGGAGATGCATATGTTTG 58.592 33.333 0.00 2.91 0.00 2.93
3853 4046 4.815269 ACTGACTAGCTTGTGATTCAGTC 58.185 43.478 5.27 3.73 39.56 3.51
3979 4172 9.535878 TGGTTAGTTGATTTAAATGTTTGGTTC 57.464 29.630 5.17 0.00 0.00 3.62
3992 4185 5.159399 TGTTTGGTTCTAAGTTAACACGC 57.841 39.130 8.61 0.00 0.00 5.34
4020 4213 3.275143 TGTGTTGTGGTTCTACTTGTGG 58.725 45.455 0.00 0.00 0.00 4.17
4071 4264 7.881775 ACCTCTTAGTGTTTCTGTTGATTTT 57.118 32.000 0.00 0.00 0.00 1.82
4072 4265 8.293699 ACCTCTTAGTGTTTCTGTTGATTTTT 57.706 30.769 0.00 0.00 0.00 1.94
4073 4266 8.190784 ACCTCTTAGTGTTTCTGTTGATTTTTG 58.809 33.333 0.00 0.00 0.00 2.44
4074 4267 7.649306 CCTCTTAGTGTTTCTGTTGATTTTTGG 59.351 37.037 0.00 0.00 0.00 3.28
4358 4551 7.064253 GTGCAAGGTACTAACTTGACGATTTAT 59.936 37.037 16.73 0.00 46.27 1.40
4481 4674 3.044059 GCATGTGCCGCAGAAGGAC 62.044 63.158 0.00 0.00 34.31 3.85
4661 4860 4.277476 ACAAAGAACCAAGGACATGAACA 58.723 39.130 0.00 0.00 0.00 3.18
4683 4882 5.869888 ACACATACTCATCGTTTCTCTTTCC 59.130 40.000 0.00 0.00 0.00 3.13
4955 5156 7.121315 GTGATAACTAATCAAAAGGAGGCTTGT 59.879 37.037 0.00 0.00 46.17 3.16
4976 5177 5.670485 TGTTGTGCTCTTCTTCTCTTACAA 58.330 37.500 0.00 0.00 0.00 2.41
4977 5178 6.112734 TGTTGTGCTCTTCTTCTCTTACAAA 58.887 36.000 0.00 0.00 0.00 2.83
4978 5179 6.037172 TGTTGTGCTCTTCTTCTCTTACAAAC 59.963 38.462 0.00 0.00 0.00 2.93
4979 5180 5.057149 TGTGCTCTTCTTCTCTTACAAACC 58.943 41.667 0.00 0.00 0.00 3.27
4988 5192 9.110502 CTTCTTCTCTTACAAACCTTACACTTT 57.889 33.333 0.00 0.00 0.00 2.66
4989 5193 9.457436 TTCTTCTCTTACAAACCTTACACTTTT 57.543 29.630 0.00 0.00 0.00 2.27
5025 5229 1.142474 GGTCCGTTTACAAGACCGTG 58.858 55.000 4.02 0.00 40.65 4.94
5049 5253 3.758973 TTGCGAACCTTGCCGACCA 62.759 57.895 0.00 0.00 0.00 4.02
5185 5389 2.093235 GTGCAGGTAAATGCTCTCTCCT 60.093 50.000 0.00 0.00 46.63 3.69
5186 5390 2.093288 TGCAGGTAAATGCTCTCTCCTG 60.093 50.000 11.43 11.43 46.63 3.86
5188 5392 3.620966 GCAGGTAAATGCTCTCTCCTGTT 60.621 47.826 15.15 0.00 43.07 3.16
5189 5393 4.187694 CAGGTAAATGCTCTCTCCTGTTC 58.812 47.826 0.00 0.00 38.01 3.18
5190 5394 4.081198 CAGGTAAATGCTCTCTCCTGTTCT 60.081 45.833 0.00 0.00 38.01 3.01
5191 5395 4.081198 AGGTAAATGCTCTCTCCTGTTCTG 60.081 45.833 0.00 0.00 0.00 3.02
5192 5396 3.347077 AAATGCTCTCTCCTGTTCTGG 57.653 47.619 0.00 0.00 0.00 3.86
5193 5397 1.949799 ATGCTCTCTCCTGTTCTGGT 58.050 50.000 0.00 0.00 0.00 4.00
5198 5437 3.244387 GCTCTCTCCTGTTCTGGTTCTTT 60.244 47.826 0.00 0.00 0.00 2.52
5206 5445 2.290367 TGTTCTGGTTCTTTGTGCATCG 59.710 45.455 0.00 0.00 0.00 3.84
5210 5449 1.154225 GTTCTTTGTGCATCGCGGG 60.154 57.895 6.13 0.00 0.00 6.13
5211 5450 1.599518 TTCTTTGTGCATCGCGGGT 60.600 52.632 6.13 0.00 0.00 5.28
5212 5451 1.851021 TTCTTTGTGCATCGCGGGTG 61.851 55.000 6.13 7.20 0.00 4.61
5314 5553 2.824041 CAATCCGAAGCCCCCGTG 60.824 66.667 0.00 0.00 0.00 4.94
5334 5573 1.657822 GCTTCCCAGTTGTAGCTAGC 58.342 55.000 6.62 6.62 0.00 3.42
5350 5592 2.410774 GCTAGCTAGCGCGATTCAATTG 60.411 50.000 28.89 0.00 42.32 2.32
5357 5599 2.161410 AGCGCGATTCAATTGTTTAGCA 59.839 40.909 12.10 0.00 0.00 3.49
5361 5603 5.444481 GCGCGATTCAATTGTTTAGCATTTT 60.444 36.000 12.10 0.00 0.00 1.82
5414 5656 2.880268 CACCAGTGAATTGAGCTGACAA 59.120 45.455 0.00 0.00 32.39 3.18
5420 5664 4.697352 AGTGAATTGAGCTGACAACCATAC 59.303 41.667 0.00 0.00 32.50 2.39
5431 5676 5.451242 GCTGACAACCATACTGGAACAAAAA 60.451 40.000 0.00 0.00 40.96 1.94
5570 6122 1.427753 CCCTGGAGTAAAACCCAAGGT 59.572 52.381 0.00 0.00 37.65 3.50
5580 6132 0.325203 AACCCAAGGTTTGTGCCAGT 60.325 50.000 0.00 0.00 44.33 4.00
5667 6225 4.350368 TTTTTGGAAAAGGAGGAATGGC 57.650 40.909 0.00 0.00 0.00 4.40
5668 6226 1.937191 TTGGAAAAGGAGGAATGGCC 58.063 50.000 0.00 0.00 0.00 5.36
5669 6227 0.041090 TGGAAAAGGAGGAATGGCCC 59.959 55.000 0.00 0.00 37.37 5.80
5670 6228 0.687757 GGAAAAGGAGGAATGGCCCC 60.688 60.000 0.00 0.00 37.37 5.80
5671 6229 1.000359 AAAAGGAGGAATGGCCCCG 60.000 57.895 0.00 0.00 37.37 5.73
5672 6230 2.514516 AAAAGGAGGAATGGCCCCGG 62.515 60.000 0.00 0.00 37.37 5.73
5684 6242 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
5685 6243 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
5686 6244 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
5687 6245 1.078214 CCGGCCTCTGCATCAGAAA 60.078 57.895 0.00 0.00 40.18 2.52
5688 6246 1.094073 CCGGCCTCTGCATCAGAAAG 61.094 60.000 0.00 0.00 40.18 2.62
5689 6247 0.107993 CGGCCTCTGCATCAGAAAGA 60.108 55.000 0.00 0.00 40.18 2.52
5690 6248 1.474677 CGGCCTCTGCATCAGAAAGAT 60.475 52.381 0.00 0.00 40.18 2.40
5701 6259 4.808414 ATCAGAAAGATGTGTTCGGAGA 57.192 40.909 0.00 0.00 33.63 3.71
5702 6260 4.179926 TCAGAAAGATGTGTTCGGAGAG 57.820 45.455 0.00 0.00 38.43 3.20
5703 6261 3.826729 TCAGAAAGATGTGTTCGGAGAGA 59.173 43.478 0.00 0.00 38.43 3.10
5704 6262 4.280929 TCAGAAAGATGTGTTCGGAGAGAA 59.719 41.667 0.00 0.00 38.43 2.87
5705 6263 4.991056 CAGAAAGATGTGTTCGGAGAGAAA 59.009 41.667 0.00 0.00 41.10 2.52
5706 6264 5.466728 CAGAAAGATGTGTTCGGAGAGAAAA 59.533 40.000 0.00 0.00 41.10 2.29
5707 6265 6.017934 CAGAAAGATGTGTTCGGAGAGAAAAA 60.018 38.462 0.00 0.00 41.10 1.94
5708 6266 6.712547 AGAAAGATGTGTTCGGAGAGAAAAAT 59.287 34.615 0.00 0.00 41.10 1.82
5709 6267 6.487689 AAGATGTGTTCGGAGAGAAAAATC 57.512 37.500 0.00 0.00 41.10 2.17
5710 6268 5.799213 AGATGTGTTCGGAGAGAAAAATCT 58.201 37.500 0.00 0.00 41.10 2.40
5711 6269 6.234177 AGATGTGTTCGGAGAGAAAAATCTT 58.766 36.000 0.00 0.00 41.10 2.40
5712 6270 5.673337 TGTGTTCGGAGAGAAAAATCTTG 57.327 39.130 0.00 0.00 41.10 3.02
5713 6271 5.364778 TGTGTTCGGAGAGAAAAATCTTGA 58.635 37.500 0.00 0.00 41.10 3.02
5714 6272 5.997746 TGTGTTCGGAGAGAAAAATCTTGAT 59.002 36.000 0.00 0.00 41.10 2.57
5715 6273 6.073058 TGTGTTCGGAGAGAAAAATCTTGATG 60.073 38.462 0.00 0.00 41.10 3.07
5716 6274 6.147821 GTGTTCGGAGAGAAAAATCTTGATGA 59.852 38.462 0.00 0.00 41.10 2.92
5717 6275 6.881065 TGTTCGGAGAGAAAAATCTTGATGAT 59.119 34.615 0.00 0.00 41.10 2.45
5718 6276 8.040727 TGTTCGGAGAGAAAAATCTTGATGATA 58.959 33.333 0.00 0.00 41.10 2.15
5719 6277 9.050601 GTTCGGAGAGAAAAATCTTGATGATAT 57.949 33.333 0.00 0.00 41.10 1.63
5720 6278 9.618890 TTCGGAGAGAAAAATCTTGATGATATT 57.381 29.630 0.00 0.00 38.43 1.28
5721 6279 9.618890 TCGGAGAGAAAAATCTTGATGATATTT 57.381 29.630 0.00 0.00 34.45 1.40
5755 6313 4.446994 TCCTGATGATATCTAAGCTGCG 57.553 45.455 3.98 0.00 0.00 5.18
5809 6425 7.488322 CAATTTTCAAAAGAGGGTGTGTAGAA 58.512 34.615 0.00 0.00 0.00 2.10
5810 6426 7.654022 ATTTTCAAAAGAGGGTGTGTAGAAA 57.346 32.000 0.00 0.00 0.00 2.52
5842 6458 5.960811 AGTCTCTCAAGATATTCCTTGTGGA 59.039 40.000 0.00 0.00 42.95 4.02
5861 6478 5.016831 GTGGACCCCTCAATAATTGTCTTT 58.983 41.667 0.00 0.00 0.00 2.52
5900 6554 6.267928 GTGGTAGGTACATCAACAGGAGATAT 59.732 42.308 0.00 0.00 0.00 1.63
5901 6555 7.450634 GTGGTAGGTACATCAACAGGAGATATA 59.549 40.741 0.00 0.00 0.00 0.86
5902 6556 8.177456 TGGTAGGTACATCAACAGGAGATATAT 58.823 37.037 0.00 0.00 0.00 0.86
5904 6558 7.487822 AGGTACATCAACAGGAGATATATGG 57.512 40.000 0.00 0.00 0.00 2.74
5905 6559 7.019388 AGGTACATCAACAGGAGATATATGGT 58.981 38.462 0.00 0.00 0.00 3.55
5907 6561 8.470805 GGTACATCAACAGGAGATATATGGTAG 58.529 40.741 0.00 0.00 0.00 3.18
5908 6562 9.026121 GTACATCAACAGGAGATATATGGTAGT 57.974 37.037 0.00 0.00 0.00 2.73
5911 6565 9.249053 CATCAACAGGAGATATATGGTAGTACT 57.751 37.037 0.00 0.00 0.00 2.73
5913 6567 7.176865 TCAACAGGAGATATATGGTAGTACTGC 59.823 40.741 5.39 3.50 0.00 4.40
5914 6568 6.795590 ACAGGAGATATATGGTAGTACTGCT 58.204 40.000 10.95 0.00 0.00 4.24
5915 6569 7.929959 ACAGGAGATATATGGTAGTACTGCTA 58.070 38.462 10.95 5.10 0.00 3.49
5916 6570 8.050325 ACAGGAGATATATGGTAGTACTGCTAG 58.950 40.741 10.95 0.00 0.00 3.42
5918 6572 6.263617 GGAGATATATGGTAGTACTGCTAGGC 59.736 46.154 10.95 0.00 0.00 3.93
5919 6573 6.130569 AGATATATGGTAGTACTGCTAGGCC 58.869 44.000 10.95 0.00 0.00 5.19
5920 6574 2.471815 ATGGTAGTACTGCTAGGCCA 57.528 50.000 5.01 7.14 32.51 5.36
5921 6575 2.471815 TGGTAGTACTGCTAGGCCAT 57.528 50.000 5.01 0.00 0.00 4.40
5922 6576 2.039418 TGGTAGTACTGCTAGGCCATG 58.961 52.381 5.01 0.00 0.00 3.66
5932 6592 2.027469 TGCTAGGCCATGCATATCTGAG 60.027 50.000 17.04 0.00 33.94 3.35
5937 6597 1.166129 CCATGCATATCTGAGCTGCC 58.834 55.000 0.00 0.00 35.02 4.85
5940 6600 0.835276 TGCATATCTGAGCTGCCAGT 59.165 50.000 14.79 7.69 35.02 4.00
5987 6648 3.577649 TCGAAAGAGGCGGATCATATC 57.422 47.619 0.00 0.00 34.84 1.63
5988 6649 2.231478 TCGAAAGAGGCGGATCATATCC 59.769 50.000 0.00 0.00 39.96 2.59
5989 6650 4.067128 TCGAAAGAGGCGGATCATATCCT 61.067 47.826 4.52 0.00 40.69 3.24
5998 6659 2.544721 GGATCATATCCTCTCCTGCCA 58.455 52.381 0.00 0.00 46.19 4.92
5999 6660 3.113824 GGATCATATCCTCTCCTGCCAT 58.886 50.000 0.00 0.00 46.19 4.40
6005 6666 1.210204 TCCTCTCCTGCCATGGCTTT 61.210 55.000 35.53 0.00 42.51 3.51
6022 6683 4.988708 GCTTTGCTAGCTGTATGAGATC 57.011 45.455 17.23 0.00 46.77 2.75
6023 6684 3.428198 GCTTTGCTAGCTGTATGAGATCG 59.572 47.826 17.23 0.00 46.77 3.69
6027 6688 3.251972 TGCTAGCTGTATGAGATCGTCTG 59.748 47.826 17.23 0.00 0.00 3.51
6030 6691 2.884012 AGCTGTATGAGATCGTCTGGAG 59.116 50.000 0.00 0.00 0.00 3.86
6031 6692 2.881513 GCTGTATGAGATCGTCTGGAGA 59.118 50.000 0.00 0.00 0.00 3.71
6038 6699 2.955660 GAGATCGTCTGGAGAGGATGTT 59.044 50.000 14.89 5.06 46.07 2.71
6039 6700 2.955660 AGATCGTCTGGAGAGGATGTTC 59.044 50.000 14.89 4.08 46.07 3.18
6040 6701 1.475403 TCGTCTGGAGAGGATGTTCC 58.525 55.000 0.00 0.00 34.45 3.62
6041 6702 1.186200 CGTCTGGAGAGGATGTTCCA 58.814 55.000 0.00 0.00 39.61 3.53
6042 6703 1.759445 CGTCTGGAGAGGATGTTCCAT 59.241 52.381 0.00 0.00 42.32 3.41
6073 6734 1.277557 CTGTAGCTCAAGCCTTCCTGT 59.722 52.381 0.00 0.00 43.38 4.00
6074 6735 1.699634 TGTAGCTCAAGCCTTCCTGTT 59.300 47.619 0.00 0.00 43.38 3.16
6083 6744 4.019174 CAAGCCTTCCTGTTGTGGATAAT 58.981 43.478 0.00 0.00 35.83 1.28
6084 6745 3.624777 AGCCTTCCTGTTGTGGATAATG 58.375 45.455 0.00 0.00 35.83 1.90
6086 6747 3.378427 GCCTTCCTGTTGTGGATAATGAC 59.622 47.826 0.00 0.00 35.83 3.06
6088 6749 4.637534 CCTTCCTGTTGTGGATAATGACTG 59.362 45.833 0.00 0.00 35.83 3.51
6095 6756 6.969366 TGTTGTGGATAATGACTGAACAAAG 58.031 36.000 0.00 0.00 0.00 2.77
6104 6765 3.295093 TGACTGAACAAAGGCATCCAAA 58.705 40.909 0.00 0.00 27.10 3.28
6106 6767 4.161189 TGACTGAACAAAGGCATCCAAAAA 59.839 37.500 0.00 0.00 27.10 1.94
6108 6769 5.683681 ACTGAACAAAGGCATCCAAAAATT 58.316 33.333 0.00 0.00 0.00 1.82
6109 6770 5.759763 ACTGAACAAAGGCATCCAAAAATTC 59.240 36.000 0.00 0.00 0.00 2.17
6114 6775 7.401955 ACAAAGGCATCCAAAAATTCAAAAA 57.598 28.000 0.00 0.00 0.00 1.94
6141 6802 9.844257 AGAAGAAGATAAAAATCCTACTCCATG 57.156 33.333 0.00 0.00 0.00 3.66
6142 6803 9.838339 GAAGAAGATAAAAATCCTACTCCATGA 57.162 33.333 0.00 0.00 0.00 3.07
6178 6839 9.917887 ATGAAGAGAATTATCTGAAACCTGAAT 57.082 29.630 2.78 0.00 35.54 2.57
6179 6840 9.170734 TGAAGAGAATTATCTGAAACCTGAATG 57.829 33.333 2.78 0.00 35.54 2.67
6180 6841 7.565323 AGAGAATTATCTGAAACCTGAATGC 57.435 36.000 0.80 0.00 35.54 3.56
6181 6842 7.344913 AGAGAATTATCTGAAACCTGAATGCT 58.655 34.615 0.80 0.00 35.54 3.79
6182 6843 7.833183 AGAGAATTATCTGAAACCTGAATGCTT 59.167 33.333 0.80 0.00 35.54 3.91
6183 6844 7.769220 AGAATTATCTGAAACCTGAATGCTTG 58.231 34.615 0.00 0.00 33.59 4.01
6184 6845 3.863142 ATCTGAAACCTGAATGCTTGC 57.137 42.857 0.00 0.00 0.00 4.01
6185 6846 2.585330 TCTGAAACCTGAATGCTTGCA 58.415 42.857 0.00 0.00 0.00 4.08
6186 6847 3.159472 TCTGAAACCTGAATGCTTGCAT 58.841 40.909 1.81 1.81 0.00 3.96
6187 6848 3.575256 TCTGAAACCTGAATGCTTGCATT 59.425 39.130 19.16 19.16 0.00 3.56
6188 6849 4.766373 TCTGAAACCTGAATGCTTGCATTA 59.234 37.500 19.11 8.47 0.00 1.90
6189 6850 5.063180 TGAAACCTGAATGCTTGCATTAG 57.937 39.130 19.11 15.45 0.00 1.73
6190 6851 4.082081 TGAAACCTGAATGCTTGCATTAGG 60.082 41.667 24.88 24.88 0.00 2.69
6191 6852 3.091633 ACCTGAATGCTTGCATTAGGT 57.908 42.857 25.66 25.66 32.52 3.08
6192 6853 3.434309 ACCTGAATGCTTGCATTAGGTT 58.566 40.909 25.66 17.50 33.53 3.50
6193 6854 3.834231 ACCTGAATGCTTGCATTAGGTTT 59.166 39.130 25.66 15.10 33.53 3.27
6194 6855 4.178540 CCTGAATGCTTGCATTAGGTTTG 58.821 43.478 19.11 7.45 0.00 2.93
6195 6856 4.178540 CTGAATGCTTGCATTAGGTTTGG 58.821 43.478 19.11 3.55 0.00 3.28
6196 6857 2.678471 ATGCTTGCATTAGGTTTGGC 57.322 45.000 1.81 0.00 0.00 4.52
6197 6858 1.631405 TGCTTGCATTAGGTTTGGCT 58.369 45.000 0.00 0.00 0.00 4.75
6198 6859 2.801483 TGCTTGCATTAGGTTTGGCTA 58.199 42.857 0.00 0.00 0.00 3.93
6199 6860 2.491693 TGCTTGCATTAGGTTTGGCTAC 59.508 45.455 0.00 0.00 0.00 3.58
6200 6861 2.477863 GCTTGCATTAGGTTTGGCTACG 60.478 50.000 0.00 0.00 0.00 3.51
6201 6862 1.091537 TGCATTAGGTTTGGCTACGC 58.908 50.000 0.00 0.00 0.00 4.42
6202 6863 0.027586 GCATTAGGTTTGGCTACGCG 59.972 55.000 3.53 3.53 0.00 6.01
6203 6864 1.647346 CATTAGGTTTGGCTACGCGA 58.353 50.000 15.93 0.00 0.00 5.87
6204 6865 2.210116 CATTAGGTTTGGCTACGCGAT 58.790 47.619 15.93 0.00 0.00 4.58
6205 6866 2.389962 TTAGGTTTGGCTACGCGATT 57.610 45.000 15.93 0.00 0.00 3.34
6206 6867 1.930567 TAGGTTTGGCTACGCGATTC 58.069 50.000 15.93 0.00 0.00 2.52
6207 6868 0.036765 AGGTTTGGCTACGCGATTCA 60.037 50.000 15.93 2.21 0.00 2.57
6208 6869 1.014352 GGTTTGGCTACGCGATTCAT 58.986 50.000 15.93 0.00 0.00 2.57
6209 6870 2.159014 AGGTTTGGCTACGCGATTCATA 60.159 45.455 15.93 0.00 0.00 2.15
6210 6871 2.221055 GGTTTGGCTACGCGATTCATAG 59.779 50.000 15.93 4.44 0.00 2.23
6211 6872 1.497991 TTGGCTACGCGATTCATAGC 58.502 50.000 15.93 15.44 40.53 2.97
6212 6873 0.387565 TGGCTACGCGATTCATAGCA 59.612 50.000 22.22 9.69 42.59 3.49
6213 6874 1.202475 TGGCTACGCGATTCATAGCAA 60.202 47.619 22.22 12.18 42.59 3.91
6214 6875 1.192534 GGCTACGCGATTCATAGCAAC 59.807 52.381 22.22 6.99 42.59 4.17
6215 6876 1.136884 GCTACGCGATTCATAGCAACG 60.137 52.381 15.93 0.00 40.87 4.10
6216 6877 1.452025 CTACGCGATTCATAGCAACGG 59.548 52.381 15.93 0.00 0.00 4.44
6217 6878 1.083401 CGCGATTCATAGCAACGGC 60.083 57.895 0.00 0.00 41.61 5.68
6227 6888 3.165498 GCAACGGCGTGGTAAGAG 58.835 61.111 15.70 0.00 0.00 2.85
6228 6889 2.388232 GCAACGGCGTGGTAAGAGG 61.388 63.158 15.70 0.00 0.00 3.69
6229 6890 1.290955 CAACGGCGTGGTAAGAGGA 59.709 57.895 15.70 0.00 0.00 3.71
6230 6891 1.012486 CAACGGCGTGGTAAGAGGAC 61.012 60.000 15.70 0.00 0.00 3.85
6231 6892 1.466025 AACGGCGTGGTAAGAGGACA 61.466 55.000 15.70 0.00 0.00 4.02
6232 6893 1.255667 ACGGCGTGGTAAGAGGACAT 61.256 55.000 13.76 0.00 0.00 3.06
6233 6894 0.806102 CGGCGTGGTAAGAGGACATG 60.806 60.000 0.00 0.00 0.00 3.21
6234 6895 0.249398 GGCGTGGTAAGAGGACATGT 59.751 55.000 0.00 0.00 0.00 3.21
6235 6896 1.338769 GGCGTGGTAAGAGGACATGTT 60.339 52.381 0.00 0.00 0.00 2.71
6236 6897 2.093869 GGCGTGGTAAGAGGACATGTTA 60.094 50.000 0.00 0.00 0.00 2.41
6237 6898 3.187700 GCGTGGTAAGAGGACATGTTAG 58.812 50.000 0.00 0.00 0.00 2.34
6238 6899 3.119245 GCGTGGTAAGAGGACATGTTAGA 60.119 47.826 0.00 0.00 0.00 2.10
6239 6900 4.673441 CGTGGTAAGAGGACATGTTAGAG 58.327 47.826 0.00 0.00 0.00 2.43
6240 6901 4.158025 CGTGGTAAGAGGACATGTTAGAGT 59.842 45.833 0.00 0.00 0.00 3.24
6241 6902 5.356190 CGTGGTAAGAGGACATGTTAGAGTA 59.644 44.000 0.00 0.00 0.00 2.59
6242 6903 6.562518 GTGGTAAGAGGACATGTTAGAGTAC 58.437 44.000 0.00 0.83 0.00 2.73
6243 6904 5.356190 TGGTAAGAGGACATGTTAGAGTACG 59.644 44.000 0.00 0.00 0.00 3.67
6244 6905 4.985538 AAGAGGACATGTTAGAGTACGG 57.014 45.455 0.00 0.00 0.00 4.02
6245 6906 3.288964 AGAGGACATGTTAGAGTACGGG 58.711 50.000 0.00 0.00 0.00 5.28
6246 6907 1.755380 AGGACATGTTAGAGTACGGGC 59.245 52.381 0.00 0.00 0.00 6.13
6247 6908 1.535437 GGACATGTTAGAGTACGGGCG 60.535 57.143 0.00 0.00 0.00 6.13
6248 6909 0.458669 ACATGTTAGAGTACGGGCGG 59.541 55.000 0.00 0.00 0.00 6.13
6249 6910 0.874607 CATGTTAGAGTACGGGCGGC 60.875 60.000 0.00 0.00 0.00 6.53
6250 6911 2.024590 ATGTTAGAGTACGGGCGGCC 62.025 60.000 20.04 20.04 0.00 6.13
6251 6912 3.520862 TTAGAGTACGGGCGGCCG 61.521 66.667 44.20 44.20 39.31 6.13
6260 6921 3.766691 GGGCGGCCGTCAAGACTA 61.767 66.667 33.48 0.00 0.00 2.59
6261 6922 2.202756 GGCGGCCGTCAAGACTAG 60.203 66.667 27.96 0.00 0.00 2.57
6262 6923 2.202756 GCGGCCGTCAAGACTAGG 60.203 66.667 28.70 0.00 0.00 3.02
6265 6926 3.300013 GCCGTCAAGACTAGGCCT 58.700 61.111 11.78 11.78 43.54 5.19
6266 6927 2.501492 GCCGTCAAGACTAGGCCTA 58.499 57.895 13.09 13.09 43.54 3.93
6267 6928 0.386113 GCCGTCAAGACTAGGCCTAG 59.614 60.000 33.98 33.98 43.54 3.02
6268 6929 0.386113 CCGTCAAGACTAGGCCTAGC 59.614 60.000 35.21 27.04 36.66 3.42
6269 6930 1.394618 CGTCAAGACTAGGCCTAGCT 58.605 55.000 35.21 28.56 36.66 3.32
6270 6931 2.573369 CGTCAAGACTAGGCCTAGCTA 58.427 52.381 35.21 17.87 36.66 3.32
6271 6932 3.150767 CGTCAAGACTAGGCCTAGCTAT 58.849 50.000 35.21 19.41 36.66 2.97
6272 6933 3.189702 CGTCAAGACTAGGCCTAGCTATC 59.810 52.174 35.21 25.68 36.66 2.08
6273 6934 4.145807 GTCAAGACTAGGCCTAGCTATCA 58.854 47.826 35.21 16.83 36.66 2.15
6274 6935 4.022676 GTCAAGACTAGGCCTAGCTATCAC 60.023 50.000 35.21 23.12 36.66 3.06
6275 6936 3.885976 AGACTAGGCCTAGCTATCACA 57.114 47.619 35.21 2.49 36.66 3.58
6276 6937 3.492337 AGACTAGGCCTAGCTATCACAC 58.508 50.000 35.21 17.42 36.66 3.82
6277 6938 2.226912 GACTAGGCCTAGCTATCACACG 59.773 54.545 35.21 12.66 36.66 4.49
6278 6939 1.542030 CTAGGCCTAGCTATCACACGG 59.458 57.143 26.62 0.00 0.00 4.94
6279 6940 0.397254 AGGCCTAGCTATCACACGGT 60.397 55.000 1.29 0.00 0.00 4.83
6280 6941 0.249489 GGCCTAGCTATCACACGGTG 60.249 60.000 6.58 6.58 34.45 4.94
6281 6942 0.249489 GCCTAGCTATCACACGGTGG 60.249 60.000 13.48 1.73 33.87 4.61
6282 6943 0.249489 CCTAGCTATCACACGGTGGC 60.249 60.000 13.48 5.66 33.87 5.01
6283 6944 0.249489 CTAGCTATCACACGGTGGCC 60.249 60.000 13.48 0.00 33.87 5.36
6284 6945 0.686441 TAGCTATCACACGGTGGCCT 60.686 55.000 13.48 0.00 33.87 5.19
6285 6946 1.815421 GCTATCACACGGTGGCCTG 60.815 63.158 13.48 1.91 33.87 4.85
6286 6947 1.153369 CTATCACACGGTGGCCTGG 60.153 63.158 13.48 0.00 33.87 4.45
6287 6948 2.593468 CTATCACACGGTGGCCTGGG 62.593 65.000 13.48 0.00 33.87 4.45
6299 6960 3.443045 CCTGGGCGGTGCACATTC 61.443 66.667 20.43 6.43 42.76 2.67
6300 6961 3.803082 CTGGGCGGTGCACATTCG 61.803 66.667 20.43 14.28 42.76 3.34
6301 6962 4.634703 TGGGCGGTGCACATTCGT 62.635 61.111 20.43 0.00 36.87 3.85
6302 6963 2.435234 GGGCGGTGCACATTCGTA 60.435 61.111 20.43 0.00 0.00 3.43
6303 6964 2.746803 GGGCGGTGCACATTCGTAC 61.747 63.158 20.43 10.13 0.00 3.67
6304 6965 2.030401 GGCGGTGCACATTCGTACA 61.030 57.895 20.43 0.00 0.00 2.90
6305 6966 1.131826 GCGGTGCACATTCGTACAC 59.868 57.895 20.43 0.00 38.49 2.90
6306 6967 1.414514 CGGTGCACATTCGTACACG 59.585 57.895 20.43 5.54 39.88 4.49
6307 6968 1.279527 CGGTGCACATTCGTACACGT 61.280 55.000 20.43 0.00 39.88 4.49
6308 6969 1.700523 GGTGCACATTCGTACACGTA 58.299 50.000 20.43 0.00 39.88 3.57
6309 6970 1.387756 GGTGCACATTCGTACACGTAC 59.612 52.381 20.43 0.00 39.88 3.67
6317 6978 4.068302 GTACACGTACGCAGCTCC 57.932 61.111 16.72 0.00 0.00 4.70
6318 6979 1.210931 GTACACGTACGCAGCTCCA 59.789 57.895 16.72 0.00 0.00 3.86
6319 6980 0.179145 GTACACGTACGCAGCTCCAT 60.179 55.000 16.72 0.00 0.00 3.41
6320 6981 1.064505 GTACACGTACGCAGCTCCATA 59.935 52.381 16.72 0.00 0.00 2.74
6321 6982 0.744874 ACACGTACGCAGCTCCATAT 59.255 50.000 16.72 0.00 0.00 1.78
6322 6983 1.269102 ACACGTACGCAGCTCCATATC 60.269 52.381 16.72 0.00 0.00 1.63
6323 6984 1.029681 ACGTACGCAGCTCCATATCA 58.970 50.000 16.72 0.00 0.00 2.15
6324 6985 1.613925 ACGTACGCAGCTCCATATCAT 59.386 47.619 16.72 0.00 0.00 2.45
6325 6986 1.988467 CGTACGCAGCTCCATATCATG 59.012 52.381 0.52 0.00 0.00 3.07
6326 6987 2.351738 CGTACGCAGCTCCATATCATGA 60.352 50.000 0.52 0.00 0.00 3.07
6327 6988 2.916702 ACGCAGCTCCATATCATGAA 57.083 45.000 0.00 0.00 0.00 2.57
6328 6989 2.487934 ACGCAGCTCCATATCATGAAC 58.512 47.619 0.00 0.00 0.00 3.18
6329 6990 2.158914 ACGCAGCTCCATATCATGAACA 60.159 45.455 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.813908 GTAGCACCAACGAGGGCG 60.814 66.667 0.00 0.00 43.89 6.13
5 6 2.813908 CGTAGCACCAACGAGGGC 60.814 66.667 0.00 0.00 42.90 5.19
6 7 2.967397 TCGTAGCACCAACGAGGG 59.033 61.111 0.00 0.00 43.90 4.30
9 10 1.241165 TTCTCTCGTAGCACCAACGA 58.759 50.000 0.00 0.00 46.35 3.85
10 11 2.279582 ATTCTCTCGTAGCACCAACG 57.720 50.000 0.00 0.00 41.64 4.10
11 12 3.851098 AGAATTCTCTCGTAGCACCAAC 58.149 45.455 0.88 0.00 0.00 3.77
12 13 4.111375 GAGAATTCTCTCGTAGCACCAA 57.889 45.455 25.26 0.00 38.91 3.67
13 14 3.784701 GAGAATTCTCTCGTAGCACCA 57.215 47.619 25.26 0.00 38.91 4.17
22 23 2.535331 GCTGTCCACGAGAATTCTCTC 58.465 52.381 28.28 15.49 44.17 3.20
23 24 1.205893 GGCTGTCCACGAGAATTCTCT 59.794 52.381 28.28 15.43 40.75 3.10
24 25 1.066858 TGGCTGTCCACGAGAATTCTC 60.067 52.381 23.20 23.20 37.47 2.87
25 26 0.976641 TGGCTGTCCACGAGAATTCT 59.023 50.000 7.95 7.95 37.47 2.40
26 27 3.532896 TGGCTGTCCACGAGAATTC 57.467 52.632 0.00 0.00 37.47 2.17
35 36 1.040339 GGTTGTTTGGTGGCTGTCCA 61.040 55.000 0.00 0.00 40.85 4.02
36 37 1.040339 TGGTTGTTTGGTGGCTGTCC 61.040 55.000 0.00 0.00 0.00 4.02
37 38 1.039856 ATGGTTGTTTGGTGGCTGTC 58.960 50.000 0.00 0.00 0.00 3.51
38 39 0.752054 CATGGTTGTTTGGTGGCTGT 59.248 50.000 0.00 0.00 0.00 4.40
39 40 0.752054 ACATGGTTGTTTGGTGGCTG 59.248 50.000 0.00 0.00 29.55 4.85
40 41 1.138661 CAACATGGTTGTTTGGTGGCT 59.861 47.619 0.00 0.00 43.57 4.75
41 42 1.580815 CAACATGGTTGTTTGGTGGC 58.419 50.000 0.00 0.00 43.57 5.01
42 43 2.237393 CCAACATGGTTGTTTGGTGG 57.763 50.000 8.16 0.00 43.57 4.61
53 54 0.599558 CAGGAGTTGCACCAACATGG 59.400 55.000 10.34 0.00 45.66 3.66
64 65 0.538057 TCTTTGGCCTGCAGGAGTTG 60.538 55.000 37.21 19.86 37.39 3.16
65 66 0.185901 TTCTTTGGCCTGCAGGAGTT 59.814 50.000 37.21 0.00 37.39 3.01
66 67 0.251077 CTTCTTTGGCCTGCAGGAGT 60.251 55.000 37.21 0.00 37.39 3.85
67 68 0.037303 TCTTCTTTGGCCTGCAGGAG 59.963 55.000 37.21 23.69 37.39 3.69
68 69 0.250901 GTCTTCTTTGGCCTGCAGGA 60.251 55.000 37.21 14.26 37.39 3.86
69 70 0.538057 TGTCTTCTTTGGCCTGCAGG 60.538 55.000 29.34 29.34 38.53 4.85
70 71 0.879765 CTGTCTTCTTTGGCCTGCAG 59.120 55.000 6.78 6.78 0.00 4.41
71 72 0.538057 CCTGTCTTCTTTGGCCTGCA 60.538 55.000 3.32 0.00 0.00 4.41
72 73 1.871126 GCCTGTCTTCTTTGGCCTGC 61.871 60.000 3.32 0.00 39.49 4.85
73 74 2.261215 GCCTGTCTTCTTTGGCCTG 58.739 57.895 3.32 0.00 39.49 4.85
74 75 4.830573 GCCTGTCTTCTTTGGCCT 57.169 55.556 3.32 0.00 39.49 5.19
76 77 1.075659 AGGGCCTGTCTTCTTTGGC 59.924 57.895 4.50 0.00 44.22 4.52
77 78 0.401738 TCAGGGCCTGTCTTCTTTGG 59.598 55.000 31.60 3.49 32.61 3.28
78 79 2.276732 TTCAGGGCCTGTCTTCTTTG 57.723 50.000 31.60 5.30 32.61 2.77
93 94 0.307760 GCCACCTCACACGTTTTCAG 59.692 55.000 0.00 0.00 0.00 3.02
130 131 1.779683 GTGGTGCGCTCTACGTTTC 59.220 57.895 9.73 0.00 46.11 2.78
192 193 1.376037 GACAAAGCTGGGGGAGTCG 60.376 63.158 0.00 0.00 0.00 4.18
202 203 3.181282 GGGGGAAGGGACAAAGCT 58.819 61.111 0.00 0.00 0.00 3.74
229 231 4.952102 TTGGGGGTTTGGCCTGGC 62.952 66.667 11.05 11.05 37.43 4.85
230 232 2.922503 GTTGGGGGTTTGGCCTGG 60.923 66.667 3.32 0.00 37.43 4.45
232 234 4.614036 CGGTTGGGGGTTTGGCCT 62.614 66.667 3.32 0.00 37.43 5.19
274 276 2.481471 GCACGGGGGAGCTTTATGC 61.481 63.158 0.00 0.00 43.29 3.14
357 378 1.272554 GGGGAGACTTACCACCAGGG 61.273 65.000 0.00 0.00 44.81 4.45
363 384 1.394963 GGGGAGGGGAGACTTACCA 59.605 63.158 0.00 0.00 0.00 3.25
407 428 2.887360 CGCAAAGGGAATGGCAGG 59.113 61.111 0.00 0.00 0.00 4.85
409 430 3.381136 GGCGCAAAGGGAATGGCA 61.381 61.111 10.83 0.00 0.00 4.92
411 432 3.825611 CCGGCGCAAAGGGAATGG 61.826 66.667 10.83 0.00 0.00 3.16
457 478 0.512952 GCGCGGATTATTGGTAGCAG 59.487 55.000 8.83 0.00 0.00 4.24
498 528 4.496336 CAGGGCTGGGCTGCTACC 62.496 72.222 0.00 0.00 0.00 3.18
499 529 4.496336 CCAGGGCTGGGCTGCTAC 62.496 72.222 0.00 0.00 46.81 3.58
514 544 1.077005 CCCAGAAAATCCCCAACTCCA 59.923 52.381 0.00 0.00 0.00 3.86
532 562 7.508687 TCGAACCTAAAGTATAATAAACCCCC 58.491 38.462 0.00 0.00 0.00 5.40
552 582 2.288961 TTCACCGCCTCTAATCGAAC 57.711 50.000 0.00 0.00 0.00 3.95
555 585 2.544267 GGAATTTCACCGCCTCTAATCG 59.456 50.000 0.00 0.00 0.00 3.34
567 599 0.928229 CGGTCGATCGGGAATTTCAC 59.072 55.000 16.41 2.87 0.00 3.18
595 627 1.049289 ATCCGGTGAAGTCTAGGGCC 61.049 60.000 0.00 0.00 0.00 5.80
674 711 8.760980 TCCAAACGATCCATTTATTTCCTAAT 57.239 30.769 0.00 0.00 0.00 1.73
677 714 5.067805 GCTCCAAACGATCCATTTATTTCCT 59.932 40.000 0.00 0.00 0.00 3.36
679 716 6.038714 AGAGCTCCAAACGATCCATTTATTTC 59.961 38.462 10.93 0.00 0.00 2.17
680 717 5.888161 AGAGCTCCAAACGATCCATTTATTT 59.112 36.000 10.93 0.00 0.00 1.40
681 718 5.440610 AGAGCTCCAAACGATCCATTTATT 58.559 37.500 10.93 0.00 0.00 1.40
695 818 3.036819 ACTGCAGATATGAGAGCTCCAA 58.963 45.455 23.35 0.00 0.00 3.53
712 835 0.305922 GCAGCCGTATCATCAACTGC 59.694 55.000 0.00 0.00 43.09 4.40
721 844 1.004440 GGATGAGGGCAGCCGTATC 60.004 63.158 6.63 9.41 41.32 2.24
735 858 9.528018 GAGAATAGAAGTGTAGAGAAAAGGATG 57.472 37.037 0.00 0.00 0.00 3.51
772 895 2.341846 AGAGTGGAGCGGTTTTTCAA 57.658 45.000 0.00 0.00 0.00 2.69
778 901 1.906574 TCCATTTAGAGTGGAGCGGTT 59.093 47.619 0.00 0.00 40.72 4.44
799 922 2.309755 AGAGCCAAATGACAGGATTCCA 59.690 45.455 5.29 0.00 0.00 3.53
800 923 2.948315 GAGAGCCAAATGACAGGATTCC 59.052 50.000 0.00 0.00 0.00 3.01
801 924 2.611292 CGAGAGCCAAATGACAGGATTC 59.389 50.000 0.00 0.00 0.00 2.52
805 928 1.372087 GCCGAGAGCCAAATGACAGG 61.372 60.000 0.00 0.00 34.35 4.00
849 987 3.670203 GTGTAACAAGCCAATCGATTCG 58.330 45.455 7.92 2.46 36.32 3.34
872 1010 2.484889 CCCTCCGCTATTAAGACAAGC 58.515 52.381 0.00 0.00 0.00 4.01
877 1019 1.339097 GAGGCCCTCCGCTATTAAGA 58.661 55.000 0.00 0.00 37.74 2.10
887 1029 1.751563 GTAGCTCATGAGGCCCTCC 59.248 63.158 23.89 6.27 0.00 4.30
906 1048 8.068977 GCATAATCAAGAAGAGCAATTAGACTG 58.931 37.037 0.00 0.00 0.00 3.51
962 1104 4.202461 ACTGGCAGATTCTTGTCAACCTTA 60.202 41.667 23.66 0.00 31.32 2.69
963 1105 3.152341 CTGGCAGATTCTTGTCAACCTT 58.848 45.455 9.42 0.00 31.32 3.50
1005 1147 1.306148 TAGACGATAGACAGCCGGTG 58.694 55.000 1.90 2.53 41.38 4.94
1009 1151 4.569761 TGTTCATAGACGATAGACAGCC 57.430 45.455 0.00 0.00 41.38 4.85
1014 1156 6.238648 TCCAGCTATGTTCATAGACGATAGA 58.761 40.000 19.93 7.34 41.38 1.98
1020 1162 4.327982 TGCTCCAGCTATGTTCATAGAC 57.672 45.455 19.93 12.51 42.66 2.59
1065 1207 2.160417 GCACCTCTGTGTATGAAGTTGC 59.840 50.000 0.00 0.00 44.65 4.17
1107 1249 3.939066 ACGATGGCTAGTTTTTAGTGCT 58.061 40.909 0.00 0.00 0.00 4.40
1122 1264 3.103738 CGAACTAAAGGTCGTACGATGG 58.896 50.000 22.57 9.79 0.00 3.51
1136 1278 0.611714 GCCAGGGGAAGTCGAACTAA 59.388 55.000 0.00 0.00 0.00 2.24
1137 1279 0.252103 AGCCAGGGGAAGTCGAACTA 60.252 55.000 0.00 0.00 0.00 2.24
1138 1280 1.128188 AAGCCAGGGGAAGTCGAACT 61.128 55.000 0.00 0.00 0.00 3.01
1139 1281 0.611714 TAAGCCAGGGGAAGTCGAAC 59.388 55.000 0.00 0.00 0.00 3.95
1140 1282 1.278127 CTTAAGCCAGGGGAAGTCGAA 59.722 52.381 0.00 0.00 0.00 3.71
1141 1283 0.902531 CTTAAGCCAGGGGAAGTCGA 59.097 55.000 0.00 0.00 0.00 4.20
1142 1284 0.107654 CCTTAAGCCAGGGGAAGTCG 60.108 60.000 0.00 0.00 0.00 4.18
1143 1285 1.286248 TCCTTAAGCCAGGGGAAGTC 58.714 55.000 0.00 0.00 34.24 3.01
1144 1286 1.755200 TTCCTTAAGCCAGGGGAAGT 58.245 50.000 0.00 0.00 33.54 3.01
1145 1287 4.519906 TTATTCCTTAAGCCAGGGGAAG 57.480 45.455 0.00 0.00 40.53 3.46
1146 1288 4.325816 CCTTTATTCCTTAAGCCAGGGGAA 60.326 45.833 0.00 0.00 41.29 3.97
1147 1289 3.204382 CCTTTATTCCTTAAGCCAGGGGA 59.796 47.826 0.00 0.00 34.24 4.81
1148 1290 3.204382 TCCTTTATTCCTTAAGCCAGGGG 59.796 47.826 0.00 0.00 34.24 4.79
1149 1291 4.519906 TCCTTTATTCCTTAAGCCAGGG 57.480 45.455 0.00 0.00 34.24 4.45
1150 1292 6.127338 CCTTTTCCTTTATTCCTTAAGCCAGG 60.127 42.308 0.00 0.00 34.86 4.45
1151 1293 6.663523 TCCTTTTCCTTTATTCCTTAAGCCAG 59.336 38.462 0.00 0.00 0.00 4.85
1169 1311 1.725164 GTCCACGTCGTGATCCTTTTC 59.275 52.381 26.53 4.11 35.23 2.29
1182 1324 1.007271 CAGAGCACGAAGTCCACGT 60.007 57.895 0.00 0.00 41.61 4.49
1209 1351 6.528072 CCGAAAATAGAAACAGAGGCAAAATC 59.472 38.462 0.00 0.00 0.00 2.17
1254 1397 6.058553 TGAGAAATATGCTATGGGGAGATG 57.941 41.667 0.00 0.00 0.00 2.90
1271 1414 6.878389 GGGGCAAACAATTATTTCATGAGAAA 59.122 34.615 0.00 0.00 46.90 2.52
1276 1419 7.306953 CAAAAGGGGCAAACAATTATTTCATG 58.693 34.615 0.00 0.00 0.00 3.07
1277 1420 6.072008 GCAAAAGGGGCAAACAATTATTTCAT 60.072 34.615 0.00 0.00 0.00 2.57
1279 1422 5.240403 TGCAAAAGGGGCAAACAATTATTTC 59.760 36.000 0.00 0.00 38.54 2.17
1296 1439 2.021355 TGGCAAACAACCTGCAAAAG 57.979 45.000 0.00 0.00 41.78 2.27
1297 1440 2.027745 TCTTGGCAAACAACCTGCAAAA 60.028 40.909 0.00 0.00 41.78 2.44
1346 1489 5.022787 TGGCCAGCTTCCAAATAGTTAATT 58.977 37.500 0.00 0.00 0.00 1.40
1851 2029 3.389329 ACAGAAGCAGAAAGAGAACCTCA 59.611 43.478 0.00 0.00 32.06 3.86
1864 2042 5.078411 ACCTAGATAACACACAGAAGCAG 57.922 43.478 0.00 0.00 0.00 4.24
1954 2132 4.776837 ACATGACTCCTCAGAGATCAGTTT 59.223 41.667 0.00 0.00 43.39 2.66
2071 2249 8.254508 TGCATAAAGTCCACTAAAAACACTTTT 58.745 29.630 1.03 0.00 38.12 2.27
2075 2253 6.586082 CCATGCATAAAGTCCACTAAAAACAC 59.414 38.462 0.00 0.00 0.00 3.32
2248 2429 9.397280 AGGCTGGTAGAAGAAAAATTTATAGAC 57.603 33.333 0.00 0.00 0.00 2.59
2337 2526 8.482128 TCCAACTGAAAAGAAAAACATATGGTT 58.518 29.630 7.80 3.38 42.98 3.67
2338 2527 8.017418 TCCAACTGAAAAGAAAAACATATGGT 57.983 30.769 7.80 0.00 0.00 3.55
2339 2528 7.116805 GCTCCAACTGAAAAGAAAAACATATGG 59.883 37.037 7.80 0.00 0.00 2.74
2340 2529 7.869429 AGCTCCAACTGAAAAGAAAAACATATG 59.131 33.333 0.00 0.00 0.00 1.78
2341 2530 7.955918 AGCTCCAACTGAAAAGAAAAACATAT 58.044 30.769 0.00 0.00 0.00 1.78
2342 2531 7.346751 AGCTCCAACTGAAAAGAAAAACATA 57.653 32.000 0.00 0.00 0.00 2.29
2343 2532 6.225981 AGCTCCAACTGAAAAGAAAAACAT 57.774 33.333 0.00 0.00 0.00 2.71
2344 2533 5.659440 AGCTCCAACTGAAAAGAAAAACA 57.341 34.783 0.00 0.00 0.00 2.83
2345 2534 7.382488 GGATAAGCTCCAACTGAAAAGAAAAAC 59.618 37.037 0.00 0.00 44.26 2.43
2378 2567 3.022607 AGCTCAGCAAACAAATTCTGC 57.977 42.857 0.00 0.00 36.29 4.26
2538 2727 6.209192 TGGCATTCTTTCTTCTATTGAGCAAA 59.791 34.615 0.00 0.00 0.00 3.68
2666 2856 3.199508 ACATTGATTGGCAGAGTAGCTCT 59.800 43.478 0.00 0.00 42.11 4.09
2968 3158 3.018856 TGACAATAGAAGGCAGCAATGG 58.981 45.455 0.00 0.00 0.00 3.16
3195 3385 5.163953 CGATCCATATTAATTGACGCTGGTC 60.164 44.000 0.00 0.00 43.71 4.02
3218 3408 6.206829 ACAAAAGAAAGAAAATACTCCCTCCG 59.793 38.462 0.00 0.00 0.00 4.63
3221 3411 8.768501 AGAACAAAAGAAAGAAAATACTCCCT 57.231 30.769 0.00 0.00 0.00 4.20
3388 3581 4.878397 AGAAATCGGTTTAGAGCAATCAGG 59.122 41.667 0.00 0.00 0.00 3.86
3502 3695 3.743911 TGTCGTTATGGTGTGATTGTGTC 59.256 43.478 0.00 0.00 0.00 3.67
3520 3713 8.199449 TCATTAAGTAATACCCCTAAGTTGTCG 58.801 37.037 0.00 0.00 0.00 4.35
3714 3907 3.065233 CAGTAAGTGCAAAGTGCTTCACA 59.935 43.478 1.43 0.00 45.31 3.58
3853 4046 6.019479 GTGGTACAAGAAGCTTGAAGATATCG 60.019 42.308 2.10 0.00 44.16 2.92
3979 4172 6.837992 ACACATAAATGGCGTGTTAACTTAG 58.162 36.000 7.22 0.00 40.91 2.18
3988 4181 2.030363 ACCACAACACATAAATGGCGTG 60.030 45.455 0.00 0.00 33.46 5.34
3992 4185 6.817765 AGTAGAACCACAACACATAAATGG 57.182 37.500 0.00 0.00 36.46 3.16
4020 4213 1.887344 AAATTCATGGGGCACACGGC 61.887 55.000 0.00 0.00 43.74 5.68
4071 4264 7.831691 TTTCTGTCAAACCTGAAATATCCAA 57.168 32.000 0.00 0.00 31.88 3.53
4072 4265 7.505585 AGTTTTCTGTCAAACCTGAAATATCCA 59.494 33.333 0.00 0.00 37.36 3.41
4073 4266 7.809806 CAGTTTTCTGTCAAACCTGAAATATCC 59.190 37.037 0.00 0.00 42.48 2.59
4074 4267 8.567948 TCAGTTTTCTGTCAAACCTGAAATATC 58.432 33.333 0.00 0.00 46.98 1.63
4358 4551 4.199310 AGAAGTGAACTGCAAACTAAGCA 58.801 39.130 0.00 0.00 40.19 3.91
4661 4860 6.287589 AGGAAAGAGAAACGATGAGTATGT 57.712 37.500 0.00 0.00 0.00 2.29
4683 4882 9.937175 CTCCTGTAAACAGTTAGAAAAGAAAAG 57.063 33.333 9.17 0.00 42.27 2.27
4808 5007 1.464997 GGAAACAACTTGGCTAGCTCG 59.535 52.381 15.72 5.82 0.00 5.03
4944 5144 0.475906 AGAGCACAACAAGCCTCCTT 59.524 50.000 0.00 0.00 0.00 3.36
4948 5148 2.158696 AGAAGAAGAGCACAACAAGCCT 60.159 45.455 0.00 0.00 0.00 4.58
4955 5156 5.527582 GGTTTGTAAGAGAAGAAGAGCACAA 59.472 40.000 0.00 0.00 0.00 3.33
4976 5177 3.139077 CGAGCCAGAAAAGTGTAAGGTT 58.861 45.455 0.00 0.00 0.00 3.50
4977 5178 2.767505 CGAGCCAGAAAAGTGTAAGGT 58.232 47.619 0.00 0.00 0.00 3.50
4978 5179 1.464997 GCGAGCCAGAAAAGTGTAAGG 59.535 52.381 0.00 0.00 0.00 2.69
4979 5180 2.158449 CAGCGAGCCAGAAAAGTGTAAG 59.842 50.000 0.00 0.00 0.00 2.34
4988 5192 0.037326 CCTGTAACAGCGAGCCAGAA 60.037 55.000 0.00 0.00 0.00 3.02
4989 5193 1.185618 ACCTGTAACAGCGAGCCAGA 61.186 55.000 0.00 0.00 0.00 3.86
5025 5229 1.801512 GCAAGGTTCGCAATTCGGC 60.802 57.895 0.00 0.00 39.05 5.54
5049 5253 3.050703 GATCGGTGATCGTTGCAGT 57.949 52.632 0.00 0.00 40.32 4.40
5185 5389 2.290367 CGATGCACAAAGAACCAGAACA 59.710 45.455 0.00 0.00 0.00 3.18
5186 5390 2.918131 GCGATGCACAAAGAACCAGAAC 60.918 50.000 0.00 0.00 0.00 3.01
5188 5392 0.874390 GCGATGCACAAAGAACCAGA 59.126 50.000 0.00 0.00 0.00 3.86
5189 5393 0.453282 CGCGATGCACAAAGAACCAG 60.453 55.000 0.00 0.00 0.00 4.00
5190 5394 1.573932 CGCGATGCACAAAGAACCA 59.426 52.632 0.00 0.00 0.00 3.67
5191 5395 1.154225 CCGCGATGCACAAAGAACC 60.154 57.895 8.23 0.00 0.00 3.62
5192 5396 1.154225 CCCGCGATGCACAAAGAAC 60.154 57.895 8.23 0.00 0.00 3.01
5193 5397 1.599518 ACCCGCGATGCACAAAGAA 60.600 52.632 8.23 0.00 0.00 2.52
5206 5445 3.660111 GATAATGGCCGCACCCGC 61.660 66.667 0.00 0.00 37.83 6.13
5210 5449 1.137513 GACTACGATAATGGCCGCAC 58.862 55.000 0.00 0.00 0.00 5.34
5211 5450 1.037493 AGACTACGATAATGGCCGCA 58.963 50.000 0.00 0.00 0.00 5.69
5212 5451 3.293311 TTAGACTACGATAATGGCCGC 57.707 47.619 0.00 0.00 0.00 6.53
5214 5453 6.574350 AGCATATTAGACTACGATAATGGCC 58.426 40.000 0.00 0.00 0.00 5.36
5215 5454 9.400638 GATAGCATATTAGACTACGATAATGGC 57.599 37.037 0.00 0.00 0.00 4.40
5243 5482 1.002430 AGAATCCTGCGAGCAGAAACA 59.998 47.619 24.93 7.43 46.30 2.83
5314 5553 1.744114 GCTAGCTACAACTGGGAAGCC 60.744 57.143 7.70 0.00 35.54 4.35
5317 5556 2.431057 GCTAGCTAGCTACAACTGGGAA 59.569 50.000 33.71 0.00 45.62 3.97
5321 5560 1.482278 GCGCTAGCTAGCTACAACTG 58.518 55.000 36.02 22.73 46.85 3.16
5334 5573 3.962481 GCTAAACAATTGAATCGCGCTAG 59.038 43.478 13.59 0.00 0.00 3.42
5350 5592 8.970691 ACAATGACACATAGAAAATGCTAAAC 57.029 30.769 0.00 0.00 0.00 2.01
5366 5608 6.017934 ACTCTACAACAATGTGACAATGACAC 60.018 38.462 7.76 8.80 40.84 3.67
5414 5656 7.255942 CAAATCTCCTTTTTGTTCCAGTATGGT 60.256 37.037 0.00 0.00 41.79 3.55
5420 5664 8.817100 GTTTTACAAATCTCCTTTTTGTTCCAG 58.183 33.333 7.06 0.00 42.96 3.86
5431 5676 9.190317 AGTTCTTCTTTGTTTTACAAATCTCCT 57.810 29.630 5.54 0.00 45.79 3.69
5543 5803 3.089284 GGTTTTACTCCAGGGAACATGG 58.911 50.000 0.00 0.00 39.33 3.66
5570 6122 2.103432 TCTTCTCCGTTACTGGCACAAA 59.897 45.455 0.00 0.00 38.70 2.83
5580 6132 3.007506 TGTCCATGCTTTCTTCTCCGTTA 59.992 43.478 0.00 0.00 0.00 3.18
5646 6204 3.072330 GGCCATTCCTCCTTTTCCAAAAA 59.928 43.478 0.00 0.00 0.00 1.94
5647 6205 2.637382 GGCCATTCCTCCTTTTCCAAAA 59.363 45.455 0.00 0.00 0.00 2.44
5648 6206 2.256306 GGCCATTCCTCCTTTTCCAAA 58.744 47.619 0.00 0.00 0.00 3.28
5649 6207 1.552254 GGGCCATTCCTCCTTTTCCAA 60.552 52.381 4.39 0.00 34.39 3.53
5650 6208 0.041090 GGGCCATTCCTCCTTTTCCA 59.959 55.000 4.39 0.00 34.39 3.53
5651 6209 0.687757 GGGGCCATTCCTCCTTTTCC 60.688 60.000 4.39 0.00 34.39 3.13
5652 6210 1.037579 CGGGGCCATTCCTCCTTTTC 61.038 60.000 4.39 0.00 34.39 2.29
5653 6211 1.000359 CGGGGCCATTCCTCCTTTT 60.000 57.895 4.39 0.00 34.39 2.27
5654 6212 2.683475 CGGGGCCATTCCTCCTTT 59.317 61.111 4.39 0.00 34.39 3.11
5655 6213 3.420482 CCGGGGCCATTCCTCCTT 61.420 66.667 4.39 0.00 34.39 3.36
5667 6225 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
5668 6226 2.541547 TTTCTGATGCAGAGGCCGGG 62.542 60.000 2.18 0.00 41.75 5.73
5669 6227 1.078214 TTTCTGATGCAGAGGCCGG 60.078 57.895 0.00 0.00 41.75 6.13
5670 6228 0.107993 TCTTTCTGATGCAGAGGCCG 60.108 55.000 0.00 0.00 41.75 6.13
5671 6229 1.948145 CATCTTTCTGATGCAGAGGCC 59.052 52.381 0.00 0.00 44.96 5.19
5680 6238 4.464244 TCTCTCCGAACACATCTTTCTGAT 59.536 41.667 0.00 0.00 35.40 2.90
5681 6239 3.826729 TCTCTCCGAACACATCTTTCTGA 59.173 43.478 0.00 0.00 0.00 3.27
5682 6240 4.179926 TCTCTCCGAACACATCTTTCTG 57.820 45.455 0.00 0.00 0.00 3.02
5683 6241 4.873746 TTCTCTCCGAACACATCTTTCT 57.126 40.909 0.00 0.00 0.00 2.52
5684 6242 5.924475 TTTTCTCTCCGAACACATCTTTC 57.076 39.130 0.00 0.00 0.00 2.62
5685 6243 6.712547 AGATTTTTCTCTCCGAACACATCTTT 59.287 34.615 0.00 0.00 0.00 2.52
5686 6244 6.234177 AGATTTTTCTCTCCGAACACATCTT 58.766 36.000 0.00 0.00 0.00 2.40
5687 6245 5.799213 AGATTTTTCTCTCCGAACACATCT 58.201 37.500 0.00 0.00 0.00 2.90
5688 6246 6.147821 TCAAGATTTTTCTCTCCGAACACATC 59.852 38.462 0.00 0.00 0.00 3.06
5689 6247 5.997746 TCAAGATTTTTCTCTCCGAACACAT 59.002 36.000 0.00 0.00 0.00 3.21
5690 6248 5.364778 TCAAGATTTTTCTCTCCGAACACA 58.635 37.500 0.00 0.00 0.00 3.72
5691 6249 5.924475 TCAAGATTTTTCTCTCCGAACAC 57.076 39.130 0.00 0.00 0.00 3.32
5692 6250 6.230472 TCATCAAGATTTTTCTCTCCGAACA 58.770 36.000 0.00 0.00 0.00 3.18
5693 6251 6.727824 TCATCAAGATTTTTCTCTCCGAAC 57.272 37.500 0.00 0.00 0.00 3.95
5694 6252 9.618890 AATATCATCAAGATTTTTCTCTCCGAA 57.381 29.630 0.00 0.00 38.19 4.30
5695 6253 9.618890 AAATATCATCAAGATTTTTCTCTCCGA 57.381 29.630 0.00 0.00 34.19 4.55
5721 6279 9.705103 AGATATCATCAGGATTTTCCTCAAAAA 57.295 29.630 5.32 0.00 45.66 1.94
5725 6283 8.099537 GCTTAGATATCATCAGGATTTTCCTCA 58.900 37.037 5.32 0.00 45.66 3.86
5726 6284 8.320617 AGCTTAGATATCATCAGGATTTTCCTC 58.679 37.037 5.32 0.00 45.66 3.71
5728 6286 7.148272 GCAGCTTAGATATCATCAGGATTTTCC 60.148 40.741 5.32 0.00 37.44 3.13
5729 6287 7.412781 CGCAGCTTAGATATCATCAGGATTTTC 60.413 40.741 5.32 0.00 37.44 2.29
5730 6288 6.370994 CGCAGCTTAGATATCATCAGGATTTT 59.629 38.462 5.32 0.00 37.44 1.82
5749 6307 3.603532 CCATCAATATATCCACGCAGCT 58.396 45.455 0.00 0.00 0.00 4.24
5750 6308 2.679837 CCCATCAATATATCCACGCAGC 59.320 50.000 0.00 0.00 0.00 5.25
5755 6313 4.666512 ACCAAGCCCATCAATATATCCAC 58.333 43.478 0.00 0.00 0.00 4.02
5809 6425 8.646900 GGAATATCTTGAGAGACTAATCCAGTT 58.353 37.037 0.00 0.00 37.72 3.16
5810 6426 8.010105 AGGAATATCTTGAGAGACTAATCCAGT 58.990 37.037 0.00 0.00 41.47 4.00
5842 6458 6.552008 TCTCAAAAGACAATTATTGAGGGGT 58.448 36.000 12.28 0.00 45.51 4.95
5885 6502 9.249053 AGTACTACCATATATCTCCTGTTGATG 57.751 37.037 0.00 0.00 0.00 3.07
5900 6554 3.605726 TGGCCTAGCAGTACTACCATA 57.394 47.619 3.32 0.00 0.00 2.74
5901 6555 2.471815 TGGCCTAGCAGTACTACCAT 57.528 50.000 3.32 0.00 0.00 3.55
5902 6556 2.039418 CATGGCCTAGCAGTACTACCA 58.961 52.381 3.32 0.00 32.97 3.25
5904 6558 1.412710 TGCATGGCCTAGCAGTACTAC 59.587 52.381 17.04 0.00 35.51 2.73
5905 6559 1.788229 TGCATGGCCTAGCAGTACTA 58.212 50.000 17.04 0.00 35.51 1.82
5907 6561 2.839486 TATGCATGGCCTAGCAGTAC 57.161 50.000 23.40 0.00 44.94 2.73
5908 6562 3.055602 CAGATATGCATGGCCTAGCAGTA 60.056 47.826 23.40 16.65 44.94 2.74
5909 6563 1.983691 AGATATGCATGGCCTAGCAGT 59.016 47.619 23.40 16.18 44.94 4.40
5911 6565 1.980036 TCAGATATGCATGGCCTAGCA 59.020 47.619 21.90 21.90 45.92 3.49
5913 6567 2.236644 AGCTCAGATATGCATGGCCTAG 59.763 50.000 10.16 2.73 0.00 3.02
5914 6568 2.027469 CAGCTCAGATATGCATGGCCTA 60.027 50.000 10.16 0.00 0.00 3.93
5915 6569 1.065647 AGCTCAGATATGCATGGCCT 58.934 50.000 10.16 0.21 0.00 5.19
5916 6570 1.166129 CAGCTCAGATATGCATGGCC 58.834 55.000 10.16 0.00 0.00 5.36
5918 6572 1.166129 GGCAGCTCAGATATGCATGG 58.834 55.000 10.16 0.00 41.78 3.66
5919 6573 1.807142 CTGGCAGCTCAGATATGCATG 59.193 52.381 10.16 0.00 41.78 4.06
5920 6574 1.420514 ACTGGCAGCTCAGATATGCAT 59.579 47.619 15.89 3.79 41.78 3.96
5921 6575 0.835276 ACTGGCAGCTCAGATATGCA 59.165 50.000 15.89 0.00 41.78 3.96
5922 6576 2.612471 CCTACTGGCAGCTCAGATATGC 60.612 54.545 15.89 0.00 38.11 3.14
5937 6597 9.696917 GGAAAAATAAAATGATATGGCCTACTG 57.303 33.333 3.32 0.00 0.00 2.74
5957 6617 3.243267 CCGCCTCTTTCGAAAAGGAAAAA 60.243 43.478 28.33 3.23 35.64 1.94
5987 6648 1.035932 CAAAGCCATGGCAGGAGAGG 61.036 60.000 37.18 15.61 44.88 3.69
5988 6649 1.664321 GCAAAGCCATGGCAGGAGAG 61.664 60.000 37.18 20.63 44.88 3.20
5989 6650 1.679977 GCAAAGCCATGGCAGGAGA 60.680 57.895 37.18 0.00 44.88 3.71
5992 6653 2.012902 GCTAGCAAAGCCATGGCAGG 62.013 60.000 37.18 25.50 46.25 4.85
5993 6654 1.436336 GCTAGCAAAGCCATGGCAG 59.564 57.895 37.18 26.10 46.25 4.85
5994 6655 3.607163 GCTAGCAAAGCCATGGCA 58.393 55.556 37.18 15.66 46.25 4.92
6005 6666 3.251972 CAGACGATCTCATACAGCTAGCA 59.748 47.826 18.83 0.00 0.00 3.49
6020 6681 2.035632 GGAACATCCTCTCCAGACGAT 58.964 52.381 0.00 0.00 32.53 3.73
6022 6683 1.186200 TGGAACATCCTCTCCAGACG 58.814 55.000 0.00 0.00 36.79 4.18
6038 6699 0.616395 TACAGCCCAGACGGAATGGA 60.616 55.000 4.54 0.00 40.51 3.41
6039 6700 0.179073 CTACAGCCCAGACGGAATGG 60.179 60.000 0.00 0.00 37.58 3.16
6040 6701 0.811616 GCTACAGCCCAGACGGAATG 60.812 60.000 0.00 0.00 34.31 2.67
6041 6702 0.978146 AGCTACAGCCCAGACGGAAT 60.978 55.000 0.00 0.00 43.38 3.01
6042 6703 1.605058 GAGCTACAGCCCAGACGGAA 61.605 60.000 0.00 0.00 43.38 4.30
6073 6734 5.048083 GCCTTTGTTCAGTCATTATCCACAA 60.048 40.000 0.00 0.00 0.00 3.33
6074 6735 4.458989 GCCTTTGTTCAGTCATTATCCACA 59.541 41.667 0.00 0.00 0.00 4.17
6083 6744 2.655090 TGGATGCCTTTGTTCAGTCA 57.345 45.000 0.00 0.00 0.00 3.41
6084 6745 4.320608 TTTTGGATGCCTTTGTTCAGTC 57.679 40.909 0.00 0.00 0.00 3.51
6086 6747 5.759273 TGAATTTTTGGATGCCTTTGTTCAG 59.241 36.000 0.00 0.00 0.00 3.02
6088 6749 6.616774 TTGAATTTTTGGATGCCTTTGTTC 57.383 33.333 0.00 0.00 0.00 3.18
6115 6776 9.844257 CATGGAGTAGGATTTTTATCTTCTTCT 57.156 33.333 0.00 0.00 0.00 2.85
6116 6777 9.838339 TCATGGAGTAGGATTTTTATCTTCTTC 57.162 33.333 0.00 0.00 0.00 2.87
6152 6813 9.917887 ATTCAGGTTTCAGATAATTCTCTTCAT 57.082 29.630 0.00 0.00 0.00 2.57
6153 6814 9.170734 CATTCAGGTTTCAGATAATTCTCTTCA 57.829 33.333 0.00 0.00 0.00 3.02
6154 6815 8.127954 GCATTCAGGTTTCAGATAATTCTCTTC 58.872 37.037 0.00 0.00 0.00 2.87
6155 6816 7.833183 AGCATTCAGGTTTCAGATAATTCTCTT 59.167 33.333 0.00 0.00 0.00 2.85
6156 6817 7.344913 AGCATTCAGGTTTCAGATAATTCTCT 58.655 34.615 0.00 0.00 0.00 3.10
6157 6818 7.565323 AGCATTCAGGTTTCAGATAATTCTC 57.435 36.000 0.00 0.00 0.00 2.87
6158 6819 7.630082 GCAAGCATTCAGGTTTCAGATAATTCT 60.630 37.037 0.00 0.00 35.33 2.40
6159 6820 6.474751 GCAAGCATTCAGGTTTCAGATAATTC 59.525 38.462 0.00 0.00 35.33 2.17
6160 6821 6.071221 TGCAAGCATTCAGGTTTCAGATAATT 60.071 34.615 0.00 0.00 35.33 1.40
6161 6822 5.419788 TGCAAGCATTCAGGTTTCAGATAAT 59.580 36.000 0.00 0.00 35.33 1.28
6162 6823 4.766373 TGCAAGCATTCAGGTTTCAGATAA 59.234 37.500 0.00 0.00 35.33 1.75
6163 6824 4.334552 TGCAAGCATTCAGGTTTCAGATA 58.665 39.130 0.00 0.00 35.33 1.98
6164 6825 3.159472 TGCAAGCATTCAGGTTTCAGAT 58.841 40.909 0.00 0.00 35.33 2.90
6165 6826 2.585330 TGCAAGCATTCAGGTTTCAGA 58.415 42.857 0.00 0.00 35.33 3.27
6166 6827 3.587797 ATGCAAGCATTCAGGTTTCAG 57.412 42.857 0.86 0.00 34.53 3.02
6167 6828 4.082081 CCTAATGCAAGCATTCAGGTTTCA 60.082 41.667 22.19 3.38 44.50 2.69
6168 6829 4.082026 ACCTAATGCAAGCATTCAGGTTTC 60.082 41.667 25.89 0.00 44.50 2.78
6169 6830 3.834231 ACCTAATGCAAGCATTCAGGTTT 59.166 39.130 25.89 15.04 44.50 3.27
6170 6831 3.434309 ACCTAATGCAAGCATTCAGGTT 58.566 40.909 25.89 17.51 44.50 3.50
6171 6832 3.091633 ACCTAATGCAAGCATTCAGGT 57.908 42.857 25.89 25.89 44.50 4.00
6172 6833 4.178540 CAAACCTAATGCAAGCATTCAGG 58.821 43.478 22.19 24.04 44.50 3.86
6173 6834 4.178540 CCAAACCTAATGCAAGCATTCAG 58.821 43.478 22.19 16.74 44.50 3.02
6174 6835 3.617045 GCCAAACCTAATGCAAGCATTCA 60.617 43.478 22.19 9.41 44.50 2.57
6175 6836 2.931969 GCCAAACCTAATGCAAGCATTC 59.068 45.455 22.19 3.67 44.50 2.67
6176 6837 2.568509 AGCCAAACCTAATGCAAGCATT 59.431 40.909 22.19 22.19 46.85 3.56
6177 6838 2.181975 AGCCAAACCTAATGCAAGCAT 58.818 42.857 0.86 0.86 38.46 3.79
6178 6839 1.631405 AGCCAAACCTAATGCAAGCA 58.369 45.000 0.00 0.00 0.00 3.91
6179 6840 2.477863 CGTAGCCAAACCTAATGCAAGC 60.478 50.000 0.00 0.00 0.00 4.01
6180 6841 3.405170 CGTAGCCAAACCTAATGCAAG 57.595 47.619 0.00 0.00 0.00 4.01
6196 6857 1.452025 CCGTTGCTATGAATCGCGTAG 59.548 52.381 5.77 0.45 38.81 3.51
6197 6858 1.483316 CCGTTGCTATGAATCGCGTA 58.517 50.000 5.77 0.00 0.00 4.42
6198 6859 1.762222 GCCGTTGCTATGAATCGCGT 61.762 55.000 5.77 0.00 33.53 6.01
6199 6860 1.083401 GCCGTTGCTATGAATCGCG 60.083 57.895 0.00 0.00 33.53 5.87
6200 6861 1.083401 CGCCGTTGCTATGAATCGC 60.083 57.895 0.00 0.00 34.43 4.58
6201 6862 0.043053 CACGCCGTTGCTATGAATCG 60.043 55.000 0.00 0.00 34.43 3.34
6202 6863 0.304705 CCACGCCGTTGCTATGAATC 59.695 55.000 0.00 0.00 34.43 2.52
6203 6864 0.392461 ACCACGCCGTTGCTATGAAT 60.392 50.000 0.00 0.00 34.43 2.57
6204 6865 0.246910 TACCACGCCGTTGCTATGAA 59.753 50.000 0.00 0.00 34.43 2.57
6205 6866 0.246910 TTACCACGCCGTTGCTATGA 59.753 50.000 0.00 0.00 34.43 2.15
6206 6867 0.650512 CTTACCACGCCGTTGCTATG 59.349 55.000 0.00 0.00 34.43 2.23
6207 6868 0.533491 TCTTACCACGCCGTTGCTAT 59.467 50.000 0.00 0.00 34.43 2.97
6208 6869 0.108992 CTCTTACCACGCCGTTGCTA 60.109 55.000 0.00 0.00 34.43 3.49
6209 6870 1.374252 CTCTTACCACGCCGTTGCT 60.374 57.895 0.00 0.00 34.43 3.91
6210 6871 2.388232 CCTCTTACCACGCCGTTGC 61.388 63.158 0.00 0.00 0.00 4.17
6211 6872 1.012486 GTCCTCTTACCACGCCGTTG 61.012 60.000 0.00 0.00 0.00 4.10
6212 6873 1.291272 GTCCTCTTACCACGCCGTT 59.709 57.895 0.00 0.00 0.00 4.44
6213 6874 1.255667 ATGTCCTCTTACCACGCCGT 61.256 55.000 0.00 0.00 0.00 5.68
6214 6875 0.806102 CATGTCCTCTTACCACGCCG 60.806 60.000 0.00 0.00 0.00 6.46
6215 6876 0.249398 ACATGTCCTCTTACCACGCC 59.751 55.000 0.00 0.00 0.00 5.68
6216 6877 2.094762 AACATGTCCTCTTACCACGC 57.905 50.000 0.00 0.00 0.00 5.34
6217 6878 4.158025 ACTCTAACATGTCCTCTTACCACG 59.842 45.833 0.00 0.00 0.00 4.94
6218 6879 5.662674 ACTCTAACATGTCCTCTTACCAC 57.337 43.478 0.00 0.00 0.00 4.16
6219 6880 5.356190 CGTACTCTAACATGTCCTCTTACCA 59.644 44.000 0.00 0.00 0.00 3.25
6220 6881 5.221009 CCGTACTCTAACATGTCCTCTTACC 60.221 48.000 0.00 0.00 0.00 2.85
6221 6882 5.221009 CCCGTACTCTAACATGTCCTCTTAC 60.221 48.000 0.00 0.00 0.00 2.34
6222 6883 4.885907 CCCGTACTCTAACATGTCCTCTTA 59.114 45.833 0.00 0.00 0.00 2.10
6223 6884 3.700038 CCCGTACTCTAACATGTCCTCTT 59.300 47.826 0.00 0.00 0.00 2.85
6224 6885 3.288964 CCCGTACTCTAACATGTCCTCT 58.711 50.000 0.00 0.00 0.00 3.69
6225 6886 2.223758 GCCCGTACTCTAACATGTCCTC 60.224 54.545 0.00 0.00 0.00 3.71
6226 6887 1.755380 GCCCGTACTCTAACATGTCCT 59.245 52.381 0.00 0.00 0.00 3.85
6227 6888 1.535437 CGCCCGTACTCTAACATGTCC 60.535 57.143 0.00 0.00 0.00 4.02
6228 6889 1.535437 CCGCCCGTACTCTAACATGTC 60.535 57.143 0.00 0.00 0.00 3.06
6229 6890 0.458669 CCGCCCGTACTCTAACATGT 59.541 55.000 0.00 0.00 0.00 3.21
6230 6891 0.874607 GCCGCCCGTACTCTAACATG 60.875 60.000 0.00 0.00 0.00 3.21
6231 6892 1.440476 GCCGCCCGTACTCTAACAT 59.560 57.895 0.00 0.00 0.00 2.71
6232 6893 2.713967 GGCCGCCCGTACTCTAACA 61.714 63.158 0.00 0.00 0.00 2.41
6233 6894 2.105729 GGCCGCCCGTACTCTAAC 59.894 66.667 0.00 0.00 0.00 2.34
6243 6904 3.718210 CTAGTCTTGACGGCCGCCC 62.718 68.421 28.58 18.55 0.00 6.13
6244 6905 2.202756 CTAGTCTTGACGGCCGCC 60.203 66.667 28.58 17.03 0.00 6.13
6245 6906 2.202756 CCTAGTCTTGACGGCCGC 60.203 66.667 28.58 19.01 0.00 6.53
6246 6907 2.202756 GCCTAGTCTTGACGGCCG 60.203 66.667 26.86 26.86 36.56 6.13
6248 6909 0.386113 CTAGGCCTAGTCTTGACGGC 59.614 60.000 28.90 10.02 41.75 5.68
6249 6910 0.386113 GCTAGGCCTAGTCTTGACGG 59.614 60.000 34.85 12.82 35.65 4.79
6250 6911 1.394618 AGCTAGGCCTAGTCTTGACG 58.605 55.000 34.85 13.51 35.65 4.35
6251 6912 4.022676 GTGATAGCTAGGCCTAGTCTTGAC 60.023 50.000 34.85 23.39 35.65 3.18
6252 6913 4.145807 GTGATAGCTAGGCCTAGTCTTGA 58.854 47.826 34.85 20.37 35.65 3.02
6253 6914 3.891977 TGTGATAGCTAGGCCTAGTCTTG 59.108 47.826 34.85 15.62 35.65 3.02
6254 6915 3.892588 GTGTGATAGCTAGGCCTAGTCTT 59.107 47.826 34.85 24.16 35.65 3.01
6255 6916 3.492337 GTGTGATAGCTAGGCCTAGTCT 58.508 50.000 34.85 31.16 35.65 3.24
6256 6917 2.226912 CGTGTGATAGCTAGGCCTAGTC 59.773 54.545 34.85 27.13 35.65 2.59
6257 6918 2.231529 CGTGTGATAGCTAGGCCTAGT 58.768 52.381 34.85 24.81 35.65 2.57
6258 6919 1.542030 CCGTGTGATAGCTAGGCCTAG 59.458 57.143 32.12 32.12 36.29 3.02
6259 6920 1.133575 ACCGTGTGATAGCTAGGCCTA 60.134 52.381 13.09 13.09 0.00 3.93
6260 6921 0.397254 ACCGTGTGATAGCTAGGCCT 60.397 55.000 11.78 11.78 0.00 5.19
6261 6922 0.249489 CACCGTGTGATAGCTAGGCC 60.249 60.000 0.00 0.00 35.23 5.19
6262 6923 0.249489 CCACCGTGTGATAGCTAGGC 60.249 60.000 0.00 0.00 35.23 3.93
6263 6924 0.249489 GCCACCGTGTGATAGCTAGG 60.249 60.000 0.00 0.00 35.23 3.02
6264 6925 0.249489 GGCCACCGTGTGATAGCTAG 60.249 60.000 0.00 0.00 35.23 3.42
6265 6926 0.686441 AGGCCACCGTGTGATAGCTA 60.686 55.000 5.01 0.00 35.23 3.32
6266 6927 1.990060 AGGCCACCGTGTGATAGCT 60.990 57.895 5.01 0.00 35.23 3.32
6267 6928 1.815421 CAGGCCACCGTGTGATAGC 60.815 63.158 5.01 1.61 35.23 2.97
6268 6929 1.153369 CCAGGCCACCGTGTGATAG 60.153 63.158 5.01 0.00 35.23 2.08
6269 6930 2.665089 CCCAGGCCACCGTGTGATA 61.665 63.158 5.01 0.00 35.23 2.15
6270 6931 4.033776 CCCAGGCCACCGTGTGAT 62.034 66.667 5.01 0.00 35.23 3.06
6283 6944 3.803082 CGAATGTGCACCGCCCAG 61.803 66.667 15.69 0.00 0.00 4.45
6284 6945 3.241515 TACGAATGTGCACCGCCCA 62.242 57.895 15.69 0.00 0.00 5.36
6285 6946 2.435234 TACGAATGTGCACCGCCC 60.435 61.111 15.69 0.00 0.00 6.13
6286 6947 2.030401 TGTACGAATGTGCACCGCC 61.030 57.895 15.69 5.91 35.67 6.13
6287 6948 3.556625 TGTACGAATGTGCACCGC 58.443 55.556 15.69 2.33 35.67 5.68
6300 6961 0.179145 ATGGAGCTGCGTACGTGTAC 60.179 55.000 17.90 4.43 0.00 2.90
6301 6962 1.381522 TATGGAGCTGCGTACGTGTA 58.618 50.000 17.90 3.04 0.00 2.90
6302 6963 0.744874 ATATGGAGCTGCGTACGTGT 59.255 50.000 17.90 0.00 0.00 4.49
6303 6964 1.269051 TGATATGGAGCTGCGTACGTG 60.269 52.381 17.90 11.28 0.00 4.49
6304 6965 1.029681 TGATATGGAGCTGCGTACGT 58.970 50.000 17.90 0.00 0.00 3.57
6305 6966 1.988467 CATGATATGGAGCTGCGTACG 59.012 52.381 11.84 11.84 0.00 3.67
6306 6967 3.303881 TCATGATATGGAGCTGCGTAC 57.696 47.619 9.57 4.93 0.00 3.67
6307 6968 3.069443 TGTTCATGATATGGAGCTGCGTA 59.931 43.478 9.80 9.80 0.00 4.42
6308 6969 2.158914 TGTTCATGATATGGAGCTGCGT 60.159 45.455 4.95 4.95 0.00 5.24
6309 6970 2.486918 TGTTCATGATATGGAGCTGCG 58.513 47.619 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.