Multiple sequence alignment - TraesCS4D01G298700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G298700 chr4D 100.000 2935 0 0 1 2935 467999944 467997010 0.000000 5421.0
1 TraesCS4D01G298700 chr4A 89.503 1810 127 33 1 1784 3219065 3220837 0.000000 2231.0
2 TraesCS4D01G298700 chr4B 92.483 1051 53 15 732 1780 586331939 586330913 0.000000 1480.0
3 TraesCS4D01G298700 chr4B 95.652 713 28 2 1 711 586332643 586331932 0.000000 1142.0
4 TraesCS4D01G298700 chr7D 98.584 777 5 3 2159 2935 15429665 15428895 0.000000 1369.0
5 TraesCS4D01G298700 chr7D 98.084 783 10 2 2154 2935 625481205 625481983 0.000000 1358.0
6 TraesCS4D01G298700 chr7D 98.201 778 8 2 2158 2935 52808263 52807492 0.000000 1354.0
7 TraesCS4D01G298700 chr7D 98.077 780 9 3 2157 2935 132171374 132172148 0.000000 1352.0
8 TraesCS4D01G298700 chr1D 98.331 779 7 2 2158 2935 487821697 487822470 0.000000 1362.0
9 TraesCS4D01G298700 chr2D 98.201 778 10 2 2158 2935 604762161 604762934 0.000000 1356.0
10 TraesCS4D01G298700 chr2D 98.079 781 7 4 2156 2935 112884872 112884099 0.000000 1352.0
11 TraesCS4D01G298700 chr2D 100.000 31 0 0 401 431 628933100 628933070 0.000114 58.4
12 TraesCS4D01G298700 chr5D 98.203 779 6 4 2158 2935 431825127 431824356 0.000000 1354.0
13 TraesCS4D01G298700 chr3D 98.203 779 6 4 2158 2935 526057236 526058007 0.000000 1354.0
14 TraesCS4D01G298700 chr3A 100.000 31 0 0 401 431 23192156 23192126 0.000114 58.4
15 TraesCS4D01G298700 chr3B 100.000 29 0 0 403 431 672500325 672500297 0.001000 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G298700 chr4D 467997010 467999944 2934 True 5421 5421 100.0000 1 2935 1 chr4D.!!$R1 2934
1 TraesCS4D01G298700 chr4A 3219065 3220837 1772 False 2231 2231 89.5030 1 1784 1 chr4A.!!$F1 1783
2 TraesCS4D01G298700 chr4B 586330913 586332643 1730 True 1311 1480 94.0675 1 1780 2 chr4B.!!$R1 1779
3 TraesCS4D01G298700 chr7D 15428895 15429665 770 True 1369 1369 98.5840 2159 2935 1 chr7D.!!$R1 776
4 TraesCS4D01G298700 chr7D 625481205 625481983 778 False 1358 1358 98.0840 2154 2935 1 chr7D.!!$F2 781
5 TraesCS4D01G298700 chr7D 52807492 52808263 771 True 1354 1354 98.2010 2158 2935 1 chr7D.!!$R2 777
6 TraesCS4D01G298700 chr7D 132171374 132172148 774 False 1352 1352 98.0770 2157 2935 1 chr7D.!!$F1 778
7 TraesCS4D01G298700 chr1D 487821697 487822470 773 False 1362 1362 98.3310 2158 2935 1 chr1D.!!$F1 777
8 TraesCS4D01G298700 chr2D 604762161 604762934 773 False 1356 1356 98.2010 2158 2935 1 chr2D.!!$F1 777
9 TraesCS4D01G298700 chr2D 112884099 112884872 773 True 1352 1352 98.0790 2156 2935 1 chr2D.!!$R1 779
10 TraesCS4D01G298700 chr5D 431824356 431825127 771 True 1354 1354 98.2030 2158 2935 1 chr5D.!!$R1 777
11 TraesCS4D01G298700 chr3D 526057236 526058007 771 False 1354 1354 98.2030 2158 2935 1 chr3D.!!$F1 777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
848 864 0.594796 CACCGCGCTTCAAGCTTTTT 60.595 50.0 8.02 0.0 39.6 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2032 2059 0.038166 TCGGGCAAGGATGAGCTTTT 59.962 50.0 0.0 0.0 0.0 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 2.929398 TCGGTGATGTCGATGATGTTTG 59.071 45.455 0.00 0.00 0.00 2.93
69 70 3.957497 TGCCAACACTGTCAAAGGTTATT 59.043 39.130 0.00 0.00 0.00 1.40
181 182 4.748144 GCACTGGCAAGGGAGGGG 62.748 72.222 0.00 0.00 40.72 4.79
197 198 0.608308 GGGGAAAAGCGGCACTAGTT 60.608 55.000 1.45 0.00 0.00 2.24
244 245 1.067142 AGTGAAATAAGGCGCACGAGA 60.067 47.619 10.83 0.00 36.43 4.04
518 522 0.967380 CCTCCCCAATGGACAAGTGC 60.967 60.000 0.00 0.00 38.61 4.40
541 545 9.681692 GTGCATCATACATTTCAGCAAAATATA 57.318 29.630 0.00 0.00 35.77 0.86
585 592 3.261580 GGGATTTTTGGAGGAAAATGCG 58.738 45.455 7.98 0.00 43.81 4.73
641 650 3.531538 TGCAGATACCGGTGAGAATTTC 58.468 45.455 19.93 2.62 0.00 2.17
644 653 3.557595 CAGATACCGGTGAGAATTTCTGC 59.442 47.826 19.93 0.00 0.00 4.26
842 857 4.389576 GTGCCACCGCGCTTCAAG 62.390 66.667 5.56 0.00 42.47 3.02
848 864 0.594796 CACCGCGCTTCAAGCTTTTT 60.595 50.000 8.02 0.00 39.60 1.94
853 869 2.397549 GCGCTTCAAGCTTTTTCATGT 58.602 42.857 8.02 0.00 39.60 3.21
857 873 3.426525 GCTTCAAGCTTTTTCATGTTCCG 59.573 43.478 0.71 0.00 38.45 4.30
928 945 2.928801 TTTTAGCACTGGCAGAGACA 57.071 45.000 23.66 1.35 44.61 3.41
929 946 2.462456 TTTAGCACTGGCAGAGACAG 57.538 50.000 23.66 6.41 45.62 3.51
1010 1028 3.436496 GCATCGCGTCTCTATATAACCC 58.564 50.000 5.77 0.00 0.00 4.11
1014 1032 3.373130 TCGCGTCTCTATATAACCCATCG 59.627 47.826 5.77 0.00 0.00 3.84
1017 1035 4.438472 GCGTCTCTATATAACCCATCGACC 60.438 50.000 0.00 0.00 0.00 4.79
1031 1049 1.730487 CGACCAGTCGCTAGCTCAT 59.270 57.895 13.93 0.00 46.50 2.90
1036 1054 1.612950 CCAGTCGCTAGCTCATCTCAT 59.387 52.381 13.93 0.00 0.00 2.90
1042 1060 4.097741 GTCGCTAGCTCATCTCATCCATAT 59.902 45.833 13.93 0.00 0.00 1.78
1069 1087 3.689161 CCATTGCCATTCACGTTCTTCTA 59.311 43.478 0.00 0.00 0.00 2.10
1078 1096 6.090088 CCATTCACGTTCTTCTAAGTTCTCAG 59.910 42.308 0.00 0.00 0.00 3.35
1085 1103 6.750039 CGTTCTTCTAAGTTCTCAGAGGAATC 59.250 42.308 0.00 0.00 38.60 2.52
1095 1113 2.436173 CTCAGAGGAATCAACCCCTACC 59.564 54.545 0.00 0.00 31.84 3.18
1158 1177 1.766069 AAAATTTGTTGTCTCGCCGC 58.234 45.000 0.00 0.00 0.00 6.53
1159 1178 0.039527 AAATTTGTTGTCTCGCCGCC 60.040 50.000 0.00 0.00 0.00 6.13
1194 1213 1.045350 CCCAGCCTCTTCCAGATCGA 61.045 60.000 0.00 0.00 0.00 3.59
1198 1217 0.248702 GCCTCTTCCAGATCGACGAC 60.249 60.000 0.00 0.00 0.00 4.34
1492 1517 7.208064 AGAGAGATCAGATATAGACCTACCC 57.792 44.000 0.00 0.00 0.00 3.69
1500 1525 6.497259 TCAGATATAGACCTACCCCATTCAAC 59.503 42.308 0.00 0.00 0.00 3.18
1534 1559 2.079925 GTTACTTGGCTTGAGCTGAGG 58.920 52.381 0.00 0.00 41.70 3.86
1610 1635 2.046988 TGCCGGTGTCAGCAGATG 60.047 61.111 1.90 0.00 33.08 2.90
1613 1638 2.821366 CGGTGTCAGCAGATGGCC 60.821 66.667 0.00 0.00 46.50 5.36
1756 1783 9.899226 AATCTCAAGTTTTTGCTAGTTGATTAC 57.101 29.630 0.00 0.00 35.16 1.89
1757 1784 8.677148 TCTCAAGTTTTTGCTAGTTGATTACT 57.323 30.769 0.00 0.00 35.16 2.24
1758 1785 8.559536 TCTCAAGTTTTTGCTAGTTGATTACTG 58.440 33.333 0.00 0.00 35.16 2.74
1759 1786 8.220755 TCAAGTTTTTGCTAGTTGATTACTGT 57.779 30.769 0.00 0.00 34.94 3.55
1760 1787 9.332502 TCAAGTTTTTGCTAGTTGATTACTGTA 57.667 29.630 0.00 0.00 34.94 2.74
1761 1788 9.599322 CAAGTTTTTGCTAGTTGATTACTGTAG 57.401 33.333 0.00 0.00 37.73 2.74
1762 1789 9.555727 AAGTTTTTGCTAGTTGATTACTGTAGA 57.444 29.630 0.00 0.00 37.73 2.59
1763 1790 9.726438 AGTTTTTGCTAGTTGATTACTGTAGAT 57.274 29.630 0.00 0.00 37.73 1.98
1769 1796 8.630917 TGCTAGTTGATTACTGTAGATCTTACC 58.369 37.037 0.00 0.00 37.73 2.85
1780 1807 3.802948 AGATCTTACCGTACTTGCAGG 57.197 47.619 0.00 0.00 0.00 4.85
1784 1811 1.822990 CTTACCGTACTTGCAGGGAGA 59.177 52.381 0.00 0.00 0.00 3.71
1785 1812 1.471119 TACCGTACTTGCAGGGAGAG 58.529 55.000 0.00 0.00 0.00 3.20
1786 1813 0.251653 ACCGTACTTGCAGGGAGAGA 60.252 55.000 0.00 0.00 0.00 3.10
1787 1814 0.173708 CCGTACTTGCAGGGAGAGAC 59.826 60.000 0.00 0.00 0.00 3.36
1788 1815 1.178276 CGTACTTGCAGGGAGAGACT 58.822 55.000 0.00 0.00 0.00 3.24
1789 1816 2.366533 CGTACTTGCAGGGAGAGACTA 58.633 52.381 0.00 0.00 0.00 2.59
1790 1817 2.753452 CGTACTTGCAGGGAGAGACTAA 59.247 50.000 0.00 0.00 0.00 2.24
1791 1818 3.192844 CGTACTTGCAGGGAGAGACTAAA 59.807 47.826 0.00 0.00 0.00 1.85
1792 1819 3.971245 ACTTGCAGGGAGAGACTAAAG 57.029 47.619 0.00 0.00 0.00 1.85
1793 1820 3.511477 ACTTGCAGGGAGAGACTAAAGA 58.489 45.455 0.00 0.00 0.00 2.52
1794 1821 3.513515 ACTTGCAGGGAGAGACTAAAGAG 59.486 47.826 0.00 0.00 0.00 2.85
1795 1822 2.461695 TGCAGGGAGAGACTAAAGAGG 58.538 52.381 0.00 0.00 0.00 3.69
1796 1823 2.043115 TGCAGGGAGAGACTAAAGAGGA 59.957 50.000 0.00 0.00 0.00 3.71
1797 1824 3.304829 GCAGGGAGAGACTAAAGAGGAT 58.695 50.000 0.00 0.00 0.00 3.24
1798 1825 3.709141 GCAGGGAGAGACTAAAGAGGATT 59.291 47.826 0.00 0.00 0.00 3.01
1799 1826 4.896482 GCAGGGAGAGACTAAAGAGGATTA 59.104 45.833 0.00 0.00 0.00 1.75
1800 1827 5.010617 GCAGGGAGAGACTAAAGAGGATTAG 59.989 48.000 0.00 0.00 38.56 1.73
1801 1828 6.369629 CAGGGAGAGACTAAAGAGGATTAGA 58.630 44.000 1.38 0.00 36.57 2.10
1802 1829 7.010160 CAGGGAGAGACTAAAGAGGATTAGAT 58.990 42.308 1.38 0.00 36.57 1.98
1803 1830 7.010160 AGGGAGAGACTAAAGAGGATTAGATG 58.990 42.308 1.38 0.00 36.57 2.90
1804 1831 6.210584 GGGAGAGACTAAAGAGGATTAGATGG 59.789 46.154 1.38 0.00 36.57 3.51
1805 1832 6.210584 GGAGAGACTAAAGAGGATTAGATGGG 59.789 46.154 1.38 0.00 36.57 4.00
1806 1833 6.928202 AGAGACTAAAGAGGATTAGATGGGA 58.072 40.000 1.38 0.00 36.57 4.37
1807 1834 6.780522 AGAGACTAAAGAGGATTAGATGGGAC 59.219 42.308 1.38 0.00 36.57 4.46
1808 1835 6.444704 AGACTAAAGAGGATTAGATGGGACA 58.555 40.000 1.38 0.00 38.38 4.02
1809 1836 6.903534 AGACTAAAGAGGATTAGATGGGACAA 59.096 38.462 1.38 0.00 37.89 3.18
1810 1837 7.403231 AGACTAAAGAGGATTAGATGGGACAAA 59.597 37.037 1.38 0.00 37.89 2.83
1811 1838 8.107196 ACTAAAGAGGATTAGATGGGACAAAT 57.893 34.615 1.38 0.00 37.89 2.32
1812 1839 8.560903 ACTAAAGAGGATTAGATGGGACAAATT 58.439 33.333 1.38 0.00 37.89 1.82
1824 1851 2.510613 GGACAAATTTGAAGTCCCGGA 58.489 47.619 24.64 0.00 44.72 5.14
1825 1852 3.089284 GGACAAATTTGAAGTCCCGGAT 58.911 45.455 24.64 0.00 44.72 4.18
1826 1853 3.509967 GGACAAATTTGAAGTCCCGGATT 59.490 43.478 24.64 0.00 44.72 3.01
1827 1854 4.021456 GGACAAATTTGAAGTCCCGGATTT 60.021 41.667 24.64 0.00 44.72 2.17
1828 1855 5.184287 GGACAAATTTGAAGTCCCGGATTTA 59.816 40.000 24.64 0.00 44.72 1.40
1829 1856 6.127451 GGACAAATTTGAAGTCCCGGATTTAT 60.127 38.462 24.64 0.00 44.72 1.40
1830 1857 7.239763 ACAAATTTGAAGTCCCGGATTTATT 57.760 32.000 24.64 0.00 0.00 1.40
1831 1858 7.096551 ACAAATTTGAAGTCCCGGATTTATTG 58.903 34.615 24.64 0.00 0.00 1.90
1832 1859 6.850752 AATTTGAAGTCCCGGATTTATTGT 57.149 33.333 0.73 0.00 0.00 2.71
1833 1860 7.948034 AATTTGAAGTCCCGGATTTATTGTA 57.052 32.000 0.73 0.00 0.00 2.41
1834 1861 6.995511 TTTGAAGTCCCGGATTTATTGTAG 57.004 37.500 0.73 0.00 0.00 2.74
1835 1862 5.687166 TGAAGTCCCGGATTTATTGTAGT 57.313 39.130 0.73 0.00 0.00 2.73
1836 1863 6.795144 TGAAGTCCCGGATTTATTGTAGTA 57.205 37.500 0.73 0.00 0.00 1.82
1837 1864 7.369551 TGAAGTCCCGGATTTATTGTAGTAT 57.630 36.000 0.73 0.00 0.00 2.12
1838 1865 8.481492 TGAAGTCCCGGATTTATTGTAGTATA 57.519 34.615 0.73 0.00 0.00 1.47
1839 1866 9.096823 TGAAGTCCCGGATTTATTGTAGTATAT 57.903 33.333 0.73 0.00 0.00 0.86
1855 1882 7.931275 TGTAGTATATATCATCATCGTCCAGC 58.069 38.462 0.00 0.00 0.00 4.85
1856 1883 6.398234 AGTATATATCATCATCGTCCAGCC 57.602 41.667 0.00 0.00 0.00 4.85
1857 1884 5.893824 AGTATATATCATCATCGTCCAGCCA 59.106 40.000 0.00 0.00 0.00 4.75
1858 1885 5.883685 ATATATCATCATCGTCCAGCCAT 57.116 39.130 0.00 0.00 0.00 4.40
1859 1886 2.945080 ATCATCATCGTCCAGCCATT 57.055 45.000 0.00 0.00 0.00 3.16
1860 1887 1.957668 TCATCATCGTCCAGCCATTG 58.042 50.000 0.00 0.00 0.00 2.82
1861 1888 0.309922 CATCATCGTCCAGCCATTGC 59.690 55.000 0.00 0.00 37.95 3.56
1862 1889 0.107066 ATCATCGTCCAGCCATTGCA 60.107 50.000 0.00 0.00 41.13 4.08
1863 1890 0.745486 TCATCGTCCAGCCATTGCAG 60.745 55.000 0.00 0.00 41.13 4.41
1864 1891 0.745486 CATCGTCCAGCCATTGCAGA 60.745 55.000 0.00 0.00 41.13 4.26
1865 1892 0.182061 ATCGTCCAGCCATTGCAGAT 59.818 50.000 0.00 0.00 41.13 2.90
1866 1893 0.745486 TCGTCCAGCCATTGCAGATG 60.745 55.000 0.00 0.00 41.13 2.90
1867 1894 1.721664 CGTCCAGCCATTGCAGATGG 61.722 60.000 18.26 18.26 41.13 3.51
1874 1901 2.702592 CCATTGCAGATGGCCAAAAT 57.297 45.000 10.96 2.15 43.89 1.82
1875 1902 2.557317 CCATTGCAGATGGCCAAAATC 58.443 47.619 10.96 2.19 43.89 2.17
1876 1903 2.169769 CCATTGCAGATGGCCAAAATCT 59.830 45.455 10.96 5.27 43.89 2.40
1877 1904 3.454375 CATTGCAGATGGCCAAAATCTC 58.546 45.455 10.96 1.24 43.89 2.75
1878 1905 2.219080 TGCAGATGGCCAAAATCTCA 57.781 45.000 10.96 6.23 43.89 3.27
1879 1906 2.527497 TGCAGATGGCCAAAATCTCAA 58.473 42.857 10.96 0.00 43.89 3.02
1880 1907 2.494471 TGCAGATGGCCAAAATCTCAAG 59.506 45.455 10.96 0.14 43.89 3.02
1881 1908 2.494870 GCAGATGGCCAAAATCTCAAGT 59.505 45.455 10.96 0.00 31.92 3.16
1882 1909 3.056322 GCAGATGGCCAAAATCTCAAGTT 60.056 43.478 10.96 0.00 31.92 2.66
1883 1910 4.562143 GCAGATGGCCAAAATCTCAAGTTT 60.562 41.667 10.96 0.00 31.92 2.66
1884 1911 5.544650 CAGATGGCCAAAATCTCAAGTTTT 58.455 37.500 10.96 0.00 31.92 2.43
1885 1912 5.993441 CAGATGGCCAAAATCTCAAGTTTTT 59.007 36.000 10.96 0.00 31.92 1.94
1914 1941 5.223449 TGGAGTACCAGTTAACCAGAAAG 57.777 43.478 0.88 0.00 41.77 2.62
1915 1942 4.041198 TGGAGTACCAGTTAACCAGAAAGG 59.959 45.833 0.88 0.00 41.77 3.11
1916 1943 4.285260 GGAGTACCAGTTAACCAGAAAGGA 59.715 45.833 0.88 0.00 37.15 3.36
1917 1944 5.045797 GGAGTACCAGTTAACCAGAAAGGAT 60.046 44.000 0.88 0.00 37.15 3.24
1918 1945 6.449830 AGTACCAGTTAACCAGAAAGGATT 57.550 37.500 0.88 0.00 41.22 3.01
1919 1946 6.238648 AGTACCAGTTAACCAGAAAGGATTG 58.761 40.000 0.88 0.00 41.22 2.67
1920 1947 3.826729 ACCAGTTAACCAGAAAGGATTGC 59.173 43.478 0.88 0.00 41.22 3.56
1921 1948 3.826157 CCAGTTAACCAGAAAGGATTGCA 59.174 43.478 0.88 0.00 41.22 4.08
1922 1949 4.280677 CCAGTTAACCAGAAAGGATTGCAA 59.719 41.667 0.00 0.00 41.22 4.08
1923 1950 5.464168 CAGTTAACCAGAAAGGATTGCAAG 58.536 41.667 4.94 0.00 41.22 4.01
1924 1951 5.010012 CAGTTAACCAGAAAGGATTGCAAGT 59.990 40.000 4.94 0.00 41.22 3.16
1925 1952 5.598417 AGTTAACCAGAAAGGATTGCAAGTT 59.402 36.000 4.94 2.77 41.22 2.66
1926 1953 4.326504 AACCAGAAAGGATTGCAAGTTG 57.673 40.909 4.94 0.00 41.22 3.16
1927 1954 3.299503 ACCAGAAAGGATTGCAAGTTGT 58.700 40.909 4.94 0.00 41.22 3.32
1928 1955 3.706086 ACCAGAAAGGATTGCAAGTTGTT 59.294 39.130 4.94 0.00 41.22 2.83
1929 1956 4.053295 CCAGAAAGGATTGCAAGTTGTTG 58.947 43.478 4.94 1.60 41.22 3.33
1930 1957 4.441913 CCAGAAAGGATTGCAAGTTGTTGT 60.442 41.667 4.94 0.00 41.22 3.32
1931 1958 5.111293 CAGAAAGGATTGCAAGTTGTTGTT 58.889 37.500 4.94 0.00 35.92 2.83
1932 1959 5.232838 CAGAAAGGATTGCAAGTTGTTGTTC 59.767 40.000 4.94 2.47 35.92 3.18
1933 1960 3.733443 AGGATTGCAAGTTGTTGTTCC 57.267 42.857 4.94 4.21 35.92 3.62
1934 1961 3.030291 AGGATTGCAAGTTGTTGTTCCA 58.970 40.909 4.94 0.00 35.92 3.53
1935 1962 3.450457 AGGATTGCAAGTTGTTGTTCCAA 59.550 39.130 4.94 0.00 35.92 3.53
1936 1963 4.081198 AGGATTGCAAGTTGTTGTTCCAAA 60.081 37.500 4.94 0.00 35.92 3.28
1937 1964 4.633565 GGATTGCAAGTTGTTGTTCCAAAA 59.366 37.500 4.94 0.00 35.92 2.44
1938 1965 5.123027 GGATTGCAAGTTGTTGTTCCAAAAA 59.877 36.000 4.94 0.00 35.92 1.94
1962 1989 6.721704 AAAAAGAGAGAAAGGATTGCAAGT 57.278 33.333 4.94 0.00 0.00 3.16
1963 1990 6.721704 AAAAGAGAGAAAGGATTGCAAGTT 57.278 33.333 4.94 0.00 0.00 2.66
1964 1991 7.823745 AAAAGAGAGAAAGGATTGCAAGTTA 57.176 32.000 4.94 0.00 0.00 2.24
1965 1992 6.809630 AAGAGAGAAAGGATTGCAAGTTAC 57.190 37.500 4.94 0.00 0.00 2.50
1966 1993 5.869579 AGAGAGAAAGGATTGCAAGTTACA 58.130 37.500 4.94 0.00 0.00 2.41
1967 1994 5.703130 AGAGAGAAAGGATTGCAAGTTACAC 59.297 40.000 4.94 0.00 0.00 2.90
1968 1995 4.452455 AGAGAAAGGATTGCAAGTTACACG 59.548 41.667 4.94 0.00 0.00 4.49
1969 1996 2.989422 AAGGATTGCAAGTTACACGC 57.011 45.000 4.94 0.00 0.00 5.34
1970 1997 0.796312 AGGATTGCAAGTTACACGCG 59.204 50.000 3.53 3.53 0.00 6.01
1971 1998 0.515564 GGATTGCAAGTTACACGCGT 59.484 50.000 5.58 5.58 0.00 6.01
1972 1999 1.591248 GATTGCAAGTTACACGCGTG 58.409 50.000 35.99 35.99 0.00 5.34
1973 2000 0.941542 ATTGCAAGTTACACGCGTGT 59.058 45.000 42.29 42.29 46.87 4.49
1974 2001 0.727970 TTGCAAGTTACACGCGTGTT 59.272 45.000 45.14 28.06 41.83 3.32
1975 2002 0.302288 TGCAAGTTACACGCGTGTTC 59.698 50.000 45.14 35.01 41.83 3.18
1976 2003 0.302288 GCAAGTTACACGCGTGTTCA 59.698 50.000 45.14 30.61 41.83 3.18
1977 2004 1.070175 GCAAGTTACACGCGTGTTCAT 60.070 47.619 45.14 28.84 41.83 2.57
1978 2005 2.559872 CAAGTTACACGCGTGTTCATG 58.440 47.619 45.14 33.22 41.83 3.07
1979 2006 0.511221 AGTTACACGCGTGTTCATGC 59.489 50.000 45.14 28.97 41.83 4.06
1980 2007 0.511221 GTTACACGCGTGTTCATGCT 59.489 50.000 45.14 24.07 41.83 3.79
1981 2008 0.787787 TTACACGCGTGTTCATGCTC 59.212 50.000 45.14 0.00 41.83 4.26
1982 2009 1.011968 TACACGCGTGTTCATGCTCC 61.012 55.000 45.14 0.00 41.83 4.70
1983 2010 2.030412 ACGCGTGTTCATGCTCCA 59.970 55.556 12.93 0.00 0.00 3.86
1984 2011 1.596752 ACGCGTGTTCATGCTCCAA 60.597 52.632 12.93 0.00 0.00 3.53
1985 2012 0.955428 ACGCGTGTTCATGCTCCAAT 60.955 50.000 12.93 0.00 0.00 3.16
1986 2013 0.168788 CGCGTGTTCATGCTCCAATT 59.831 50.000 13.83 0.00 0.00 2.32
1987 2014 1.396648 CGCGTGTTCATGCTCCAATTA 59.603 47.619 13.83 0.00 0.00 1.40
1988 2015 2.537529 CGCGTGTTCATGCTCCAATTAG 60.538 50.000 13.83 0.00 0.00 1.73
1989 2016 2.792542 GCGTGTTCATGCTCCAATTAGC 60.793 50.000 9.41 0.00 43.08 3.09
1990 2017 2.679837 CGTGTTCATGCTCCAATTAGCT 59.320 45.455 2.08 0.00 43.19 3.32
1991 2018 3.871006 CGTGTTCATGCTCCAATTAGCTA 59.129 43.478 2.08 0.00 43.19 3.32
1992 2019 4.260375 CGTGTTCATGCTCCAATTAGCTAC 60.260 45.833 0.00 0.00 43.19 3.58
1993 2020 3.871006 TGTTCATGCTCCAATTAGCTACG 59.129 43.478 0.00 0.00 43.19 3.51
1994 2021 4.119862 GTTCATGCTCCAATTAGCTACGA 58.880 43.478 0.00 0.00 43.19 3.43
1995 2022 4.400529 TCATGCTCCAATTAGCTACGAA 57.599 40.909 0.00 0.00 43.19 3.85
1996 2023 4.765273 TCATGCTCCAATTAGCTACGAAA 58.235 39.130 0.00 0.00 43.19 3.46
1997 2024 4.811024 TCATGCTCCAATTAGCTACGAAAG 59.189 41.667 0.00 0.00 43.19 2.62
1998 2025 4.202245 TGCTCCAATTAGCTACGAAAGT 57.798 40.909 0.00 0.00 43.19 2.66
1999 2026 4.575885 TGCTCCAATTAGCTACGAAAGTT 58.424 39.130 0.00 0.00 42.28 2.66
2000 2027 4.630069 TGCTCCAATTAGCTACGAAAGTTC 59.370 41.667 0.00 0.00 42.28 3.01
2001 2028 4.259850 GCTCCAATTAGCTACGAAAGTTCG 60.260 45.833 11.72 11.72 46.10 3.95
2002 2029 6.410569 GCTCCAATTAGCTACGAAAGTTCGA 61.411 44.000 19.57 3.43 44.87 3.71
2003 2030 8.128885 GCTCCAATTAGCTACGAAAGTTCGAG 62.129 46.154 19.57 12.76 44.87 4.04
2014 2041 4.590400 GAAAGTTCGAGATGTCCATGTG 57.410 45.455 0.00 0.00 0.00 3.21
2015 2042 2.680312 AGTTCGAGATGTCCATGTGG 57.320 50.000 0.00 0.00 0.00 4.17
2016 2043 2.179427 AGTTCGAGATGTCCATGTGGA 58.821 47.619 0.00 0.00 43.08 4.02
2049 2076 3.790152 CTTAAAAGCTCATCCTTGCCC 57.210 47.619 0.00 0.00 0.00 5.36
2050 2077 1.750193 TAAAAGCTCATCCTTGCCCG 58.250 50.000 0.00 0.00 0.00 6.13
2051 2078 0.038166 AAAAGCTCATCCTTGCCCGA 59.962 50.000 0.00 0.00 0.00 5.14
2052 2079 0.257039 AAAGCTCATCCTTGCCCGAT 59.743 50.000 0.00 0.00 0.00 4.18
2053 2080 0.257039 AAGCTCATCCTTGCCCGATT 59.743 50.000 0.00 0.00 0.00 3.34
2054 2081 0.257039 AGCTCATCCTTGCCCGATTT 59.743 50.000 0.00 0.00 0.00 2.17
2055 2082 1.106285 GCTCATCCTTGCCCGATTTT 58.894 50.000 0.00 0.00 0.00 1.82
2056 2083 1.066152 GCTCATCCTTGCCCGATTTTC 59.934 52.381 0.00 0.00 0.00 2.29
2057 2084 2.368439 CTCATCCTTGCCCGATTTTCA 58.632 47.619 0.00 0.00 0.00 2.69
2058 2085 2.954318 CTCATCCTTGCCCGATTTTCAT 59.046 45.455 0.00 0.00 0.00 2.57
2059 2086 2.689471 TCATCCTTGCCCGATTTTCATG 59.311 45.455 0.00 0.00 0.00 3.07
2060 2087 1.473258 TCCTTGCCCGATTTTCATGG 58.527 50.000 0.00 0.00 0.00 3.66
2061 2088 1.185315 CCTTGCCCGATTTTCATGGT 58.815 50.000 0.00 0.00 0.00 3.55
2062 2089 1.550072 CCTTGCCCGATTTTCATGGTT 59.450 47.619 0.00 0.00 0.00 3.67
2063 2090 2.609350 CTTGCCCGATTTTCATGGTTG 58.391 47.619 0.00 0.00 0.00 3.77
2064 2091 0.246086 TGCCCGATTTTCATGGTTGC 59.754 50.000 0.00 0.00 0.00 4.17
2065 2092 0.460109 GCCCGATTTTCATGGTTGCC 60.460 55.000 0.00 0.00 0.00 4.52
2066 2093 1.185315 CCCGATTTTCATGGTTGCCT 58.815 50.000 0.00 0.00 0.00 4.75
2067 2094 1.134946 CCCGATTTTCATGGTTGCCTC 59.865 52.381 0.00 0.00 0.00 4.70
2068 2095 1.202177 CCGATTTTCATGGTTGCCTCG 60.202 52.381 0.00 0.00 0.00 4.63
2069 2096 1.468520 CGATTTTCATGGTTGCCTCGT 59.531 47.619 0.00 0.00 0.00 4.18
2070 2097 2.728846 CGATTTTCATGGTTGCCTCGTG 60.729 50.000 0.00 0.00 0.00 4.35
2071 2098 0.958091 TTTTCATGGTTGCCTCGTGG 59.042 50.000 0.00 0.00 0.00 4.94
2072 2099 0.179004 TTTCATGGTTGCCTCGTGGT 60.179 50.000 5.26 0.00 35.27 4.16
2073 2100 0.888736 TTCATGGTTGCCTCGTGGTG 60.889 55.000 5.26 0.00 35.27 4.17
2074 2101 1.600636 CATGGTTGCCTCGTGGTGT 60.601 57.895 5.26 0.00 35.27 4.16
2075 2102 1.150536 ATGGTTGCCTCGTGGTGTT 59.849 52.632 5.26 0.00 35.27 3.32
2076 2103 1.172180 ATGGTTGCCTCGTGGTGTTG 61.172 55.000 5.26 0.00 35.27 3.33
2077 2104 1.822186 GGTTGCCTCGTGGTGTTGT 60.822 57.895 5.26 0.00 35.27 3.32
2078 2105 1.381165 GGTTGCCTCGTGGTGTTGTT 61.381 55.000 5.26 0.00 35.27 2.83
2079 2106 0.454196 GTTGCCTCGTGGTGTTGTTT 59.546 50.000 5.26 0.00 35.27 2.83
2080 2107 0.453793 TTGCCTCGTGGTGTTGTTTG 59.546 50.000 5.26 0.00 35.27 2.93
2081 2108 0.678366 TGCCTCGTGGTGTTGTTTGT 60.678 50.000 5.26 0.00 35.27 2.83
2082 2109 0.248458 GCCTCGTGGTGTTGTTTGTG 60.248 55.000 5.26 0.00 35.27 3.33
2083 2110 0.248458 CCTCGTGGTGTTGTTTGTGC 60.248 55.000 0.00 0.00 0.00 4.57
2084 2111 0.588730 CTCGTGGTGTTGTTTGTGCG 60.589 55.000 0.00 0.00 0.00 5.34
2085 2112 2.220887 CGTGGTGTTGTTTGTGCGC 61.221 57.895 0.00 0.00 0.00 6.09
2086 2113 1.153939 GTGGTGTTGTTTGTGCGCA 60.154 52.632 5.66 5.66 0.00 6.09
2087 2114 0.734253 GTGGTGTTGTTTGTGCGCAA 60.734 50.000 14.00 9.01 0.00 4.85
2088 2115 0.174389 TGGTGTTGTTTGTGCGCAAT 59.826 45.000 14.00 0.00 34.18 3.56
2089 2116 1.285578 GGTGTTGTTTGTGCGCAATT 58.714 45.000 14.00 0.00 34.18 2.32
2090 2117 1.663135 GGTGTTGTTTGTGCGCAATTT 59.337 42.857 14.00 0.00 34.18 1.82
2091 2118 2.095053 GGTGTTGTTTGTGCGCAATTTT 59.905 40.909 14.00 0.00 34.18 1.82
2092 2119 3.307242 GGTGTTGTTTGTGCGCAATTTTA 59.693 39.130 14.00 0.00 34.18 1.52
2093 2120 4.259889 GTGTTGTTTGTGCGCAATTTTAC 58.740 39.130 14.00 9.48 34.18 2.01
2094 2121 3.307242 TGTTGTTTGTGCGCAATTTTACC 59.693 39.130 14.00 0.00 34.18 2.85
2095 2122 2.120232 TGTTTGTGCGCAATTTTACCG 58.880 42.857 14.00 0.00 34.18 4.02
2096 2123 1.453900 GTTTGTGCGCAATTTTACCGG 59.546 47.619 14.00 0.00 34.18 5.28
2097 2124 0.952280 TTGTGCGCAATTTTACCGGA 59.048 45.000 14.00 0.00 0.00 5.14
2098 2125 0.952280 TGTGCGCAATTTTACCGGAA 59.048 45.000 14.00 0.00 0.00 4.30
2099 2126 1.337071 TGTGCGCAATTTTACCGGAAA 59.663 42.857 14.00 0.00 0.00 3.13
2100 2127 1.717113 GTGCGCAATTTTACCGGAAAC 59.283 47.619 14.00 0.00 0.00 2.78
2101 2128 1.337071 TGCGCAATTTTACCGGAAACA 59.663 42.857 8.16 0.00 0.00 2.83
2102 2129 1.717113 GCGCAATTTTACCGGAAACAC 59.283 47.619 9.46 0.00 0.00 3.32
2103 2130 2.321263 CGCAATTTTACCGGAAACACC 58.679 47.619 9.46 0.00 0.00 4.16
2104 2131 2.287668 CGCAATTTTACCGGAAACACCA 60.288 45.455 9.46 0.00 38.90 4.17
2105 2132 3.718815 GCAATTTTACCGGAAACACCAA 58.281 40.909 9.46 0.00 38.90 3.67
2106 2133 3.738791 GCAATTTTACCGGAAACACCAAG 59.261 43.478 9.46 0.00 38.90 3.61
2107 2134 4.738243 GCAATTTTACCGGAAACACCAAGT 60.738 41.667 9.46 0.00 38.90 3.16
2108 2135 4.577834 ATTTTACCGGAAACACCAAGTG 57.422 40.909 9.46 0.00 39.75 3.16
2109 2136 1.310904 TTACCGGAAACACCAAGTGC 58.689 50.000 9.46 0.00 36.98 4.40
2110 2137 0.180642 TACCGGAAACACCAAGTGCA 59.819 50.000 9.46 0.00 36.98 4.57
2111 2138 1.101049 ACCGGAAACACCAAGTGCAG 61.101 55.000 9.46 0.00 36.98 4.41
2112 2139 1.008538 CGGAAACACCAAGTGCAGC 60.009 57.895 0.00 0.00 36.98 5.25
2113 2140 1.008538 GGAAACACCAAGTGCAGCG 60.009 57.895 0.00 0.00 36.98 5.18
2114 2141 1.724582 GGAAACACCAAGTGCAGCGT 61.725 55.000 0.00 0.00 36.98 5.07
2115 2142 0.100503 GAAACACCAAGTGCAGCGTT 59.899 50.000 0.00 0.00 36.98 4.84
2116 2143 0.179140 AAACACCAAGTGCAGCGTTG 60.179 50.000 0.00 0.00 36.98 4.10
2117 2144 1.029408 AACACCAAGTGCAGCGTTGA 61.029 50.000 2.38 0.00 36.98 3.18
2118 2145 1.009675 CACCAAGTGCAGCGTTGAC 60.010 57.895 2.38 0.00 0.00 3.18
2119 2146 1.451207 ACCAAGTGCAGCGTTGACA 60.451 52.632 2.38 0.00 0.00 3.58
2120 2147 1.029408 ACCAAGTGCAGCGTTGACAA 61.029 50.000 2.38 0.00 0.00 3.18
2121 2148 0.592247 CCAAGTGCAGCGTTGACAAC 60.592 55.000 8.34 8.34 0.00 3.32
2122 2149 0.098552 CAAGTGCAGCGTTGACAACA 59.901 50.000 18.09 0.00 0.00 3.33
2123 2150 1.024271 AAGTGCAGCGTTGACAACAT 58.976 45.000 18.09 3.31 0.00 2.71
2124 2151 0.588252 AGTGCAGCGTTGACAACATC 59.412 50.000 18.09 8.96 0.00 3.06
2125 2152 0.307453 GTGCAGCGTTGACAACATCA 59.693 50.000 18.09 6.87 34.65 3.07
2126 2153 0.307453 TGCAGCGTTGACAACATCAC 59.693 50.000 18.09 5.47 36.92 3.06
2127 2154 0.307453 GCAGCGTTGACAACATCACA 59.693 50.000 18.09 0.00 36.92 3.58
2128 2155 1.921573 GCAGCGTTGACAACATCACAC 60.922 52.381 18.09 0.00 36.92 3.82
2129 2156 1.330213 CAGCGTTGACAACATCACACA 59.670 47.619 18.09 0.00 36.92 3.72
2130 2157 1.330521 AGCGTTGACAACATCACACAC 59.669 47.619 18.09 0.00 36.92 3.82
2131 2158 1.330521 GCGTTGACAACATCACACACT 59.669 47.619 18.09 0.00 36.92 3.55
2132 2159 2.542178 GCGTTGACAACATCACACACTA 59.458 45.455 18.09 0.00 36.92 2.74
2133 2160 3.603857 GCGTTGACAACATCACACACTAC 60.604 47.826 18.09 0.00 36.92 2.73
2134 2161 3.802139 CGTTGACAACATCACACACTACT 59.198 43.478 18.09 0.00 36.92 2.57
2135 2162 4.979815 CGTTGACAACATCACACACTACTA 59.020 41.667 18.09 0.00 36.92 1.82
2136 2163 5.117135 CGTTGACAACATCACACACTACTAG 59.883 44.000 18.09 0.00 36.92 2.57
2137 2164 4.556233 TGACAACATCACACACTACTAGC 58.444 43.478 0.00 0.00 29.99 3.42
2138 2165 4.038642 TGACAACATCACACACTACTAGCA 59.961 41.667 0.00 0.00 29.99 3.49
2139 2166 4.307432 ACAACATCACACACTACTAGCAC 58.693 43.478 0.00 0.00 0.00 4.40
2140 2167 3.217599 ACATCACACACTACTAGCACG 57.782 47.619 0.00 0.00 0.00 5.34
2141 2168 2.557056 ACATCACACACTACTAGCACGT 59.443 45.455 0.00 0.00 0.00 4.49
2142 2169 3.754850 ACATCACACACTACTAGCACGTA 59.245 43.478 0.00 0.00 0.00 3.57
2143 2170 3.818961 TCACACACTACTAGCACGTAC 57.181 47.619 0.00 0.00 0.00 3.67
2144 2171 3.140623 TCACACACTACTAGCACGTACA 58.859 45.455 0.00 0.00 0.00 2.90
2145 2172 3.754850 TCACACACTACTAGCACGTACAT 59.245 43.478 0.00 0.00 0.00 2.29
2146 2173 4.937015 TCACACACTACTAGCACGTACATA 59.063 41.667 0.00 0.00 0.00 2.29
2147 2174 5.026462 CACACACTACTAGCACGTACATAC 58.974 45.833 0.00 0.00 0.00 2.39
2148 2175 4.940046 ACACACTACTAGCACGTACATACT 59.060 41.667 0.00 0.00 0.00 2.12
2149 2176 5.064452 ACACACTACTAGCACGTACATACTC 59.936 44.000 0.00 0.00 0.00 2.59
2150 2177 5.064325 CACACTACTAGCACGTACATACTCA 59.936 44.000 0.00 0.00 0.00 3.41
2151 2178 5.821470 ACACTACTAGCACGTACATACTCAT 59.179 40.000 0.00 0.00 0.00 2.90
2152 2179 6.988580 ACACTACTAGCACGTACATACTCATA 59.011 38.462 0.00 0.00 0.00 2.15
2153 2180 7.042187 ACACTACTAGCACGTACATACTCATAC 60.042 40.741 0.00 0.00 0.00 2.39
2154 2181 7.171167 CACTACTAGCACGTACATACTCATACT 59.829 40.741 0.00 0.00 0.00 2.12
2386 2413 4.760047 ATCCACGCGTCAGCACCC 62.760 66.667 9.86 0.00 45.49 4.61
2828 2862 3.317430 TCATCATCCTCACAGTCATCGAG 59.683 47.826 0.00 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.826729 CACCGATCTTCTTTCCCCTTTTT 59.173 43.478 0.00 0.00 0.00 1.94
15 16 2.092914 ACATCACCGATCTTCTTTCCCC 60.093 50.000 0.00 0.00 0.00 4.81
48 49 4.584327 AATAACCTTTGACAGTGTTGGC 57.416 40.909 0.00 0.00 0.00 4.52
69 70 6.415573 CGTATGTATTACATGTCTGCACGTTA 59.584 38.462 17.68 0.00 39.53 3.18
181 182 2.007608 CCCTAACTAGTGCCGCTTTTC 58.992 52.381 0.00 0.00 0.00 2.29
197 198 1.420430 CGTTGCTATTCCCCTCCCTA 58.580 55.000 0.00 0.00 0.00 3.53
244 245 6.031964 TCCTTCACCCTCTAGATCTACATT 57.968 41.667 0.00 0.00 0.00 2.71
280 281 9.661954 ATTATCCTATCCTCAGAAAGTAAGTCA 57.338 33.333 0.00 0.00 0.00 3.41
337 338 9.646427 ATCACTCTAGAATCACTTTTCAACTAC 57.354 33.333 0.00 0.00 0.00 2.73
451 452 7.715249 TGCATGATACTCCCTCTGTAAATAAAC 59.285 37.037 0.00 0.00 0.00 2.01
541 545 0.038526 GGTACCCGCATCGATCGATT 60.039 55.000 27.45 15.39 31.62 3.34
585 592 9.529325 TGACATTTTGCTAGTGTATGATACTAC 57.471 33.333 4.03 1.28 0.00 2.73
641 650 3.045688 GCTGAAGTTTCTTTTTCCGCAG 58.954 45.455 0.00 0.00 34.80 5.18
644 653 3.035942 CGTGCTGAAGTTTCTTTTTCCG 58.964 45.455 0.00 0.00 0.00 4.30
842 857 1.344226 GCGCCGGAACATGAAAAAGC 61.344 55.000 5.05 0.00 0.00 3.51
848 864 2.823593 CATGGCGCCGGAACATGA 60.824 61.111 23.90 0.49 43.46 3.07
853 869 2.125310 CTACACATGGCGCCGGAA 60.125 61.111 23.90 4.21 0.00 4.30
924 941 4.376146 GAAAAGTGAAGCTGTCTCTGTCT 58.624 43.478 0.00 0.00 30.44 3.41
925 942 3.183373 CGAAAAGTGAAGCTGTCTCTGTC 59.817 47.826 0.00 0.00 30.44 3.51
926 943 3.126831 CGAAAAGTGAAGCTGTCTCTGT 58.873 45.455 0.00 0.00 30.44 3.41
927 944 2.096516 GCGAAAAGTGAAGCTGTCTCTG 60.097 50.000 0.00 0.00 30.44 3.35
928 945 2.139118 GCGAAAAGTGAAGCTGTCTCT 58.861 47.619 0.00 0.00 0.00 3.10
929 946 1.136502 CGCGAAAAGTGAAGCTGTCTC 60.137 52.381 0.00 0.00 0.00 3.36
1014 1032 1.001815 GAGATGAGCTAGCGACTGGTC 60.002 57.143 9.55 0.32 0.00 4.02
1017 1035 2.351641 GGATGAGATGAGCTAGCGACTG 60.352 54.545 9.55 0.00 0.00 3.51
1031 1049 5.163066 TGGCAATGGAGAAATATGGATGAGA 60.163 40.000 0.00 0.00 0.00 3.27
1036 1054 5.302568 GTGAATGGCAATGGAGAAATATGGA 59.697 40.000 0.00 0.00 0.00 3.41
1042 1060 2.513753 ACGTGAATGGCAATGGAGAAA 58.486 42.857 0.00 0.00 0.00 2.52
1069 1087 3.009584 GGGGTTGATTCCTCTGAGAACTT 59.990 47.826 6.17 0.00 0.00 2.66
1078 1096 1.201424 ACGGTAGGGGTTGATTCCTC 58.799 55.000 0.00 0.00 34.75 3.71
1085 1103 1.072648 TCCTTGAAACGGTAGGGGTTG 59.927 52.381 0.00 0.00 0.00 3.77
1095 1113 0.366871 CGTGCTCGATCCTTGAAACG 59.633 55.000 1.00 0.00 39.71 3.60
1198 1217 2.444706 TGATCCTGGGCCTCTCCG 60.445 66.667 4.53 0.00 34.94 4.63
1471 1496 6.080969 TGGGGTAGGTCTATATCTGATCTC 57.919 45.833 0.00 0.00 0.00 2.75
1483 1508 2.197465 GAGGTTGAATGGGGTAGGTCT 58.803 52.381 0.00 0.00 0.00 3.85
1484 1509 2.197465 AGAGGTTGAATGGGGTAGGTC 58.803 52.381 0.00 0.00 0.00 3.85
1489 1514 2.208872 AGCATAGAGGTTGAATGGGGT 58.791 47.619 0.00 0.00 0.00 4.95
1492 1517 6.949352 ACAATAAGCATAGAGGTTGAATGG 57.051 37.500 0.00 0.00 38.62 3.16
1500 1525 6.058183 AGCCAAGTAACAATAAGCATAGAGG 58.942 40.000 0.00 0.00 0.00 3.69
1534 1559 6.997239 AATAATCCCAAGAACCGTAAGAAC 57.003 37.500 0.00 0.00 43.02 3.01
1613 1638 4.465446 TCCCGCCTCTCCTCCCTG 62.465 72.222 0.00 0.00 0.00 4.45
1685 1710 4.143333 CCGATCGTCTTGCCCGGT 62.143 66.667 15.09 0.00 35.83 5.28
1715 1740 3.039202 GATTTGCACCCTCGCGTGG 62.039 63.158 20.08 20.08 34.16 4.94
1751 1778 7.590689 GCAAGTACGGTAAGATCTACAGTAATC 59.409 40.741 0.00 0.00 31.87 1.75
1756 1783 5.244785 TGCAAGTACGGTAAGATCTACAG 57.755 43.478 0.00 0.00 0.00 2.74
1757 1784 4.097437 CCTGCAAGTACGGTAAGATCTACA 59.903 45.833 0.00 0.00 0.00 2.74
1758 1785 4.499357 CCCTGCAAGTACGGTAAGATCTAC 60.499 50.000 0.00 0.00 0.00 2.59
1759 1786 3.635373 CCCTGCAAGTACGGTAAGATCTA 59.365 47.826 0.00 0.00 0.00 1.98
1760 1787 2.431057 CCCTGCAAGTACGGTAAGATCT 59.569 50.000 0.00 0.00 0.00 2.75
1761 1788 2.429610 TCCCTGCAAGTACGGTAAGATC 59.570 50.000 0.00 0.00 0.00 2.75
1762 1789 2.431057 CTCCCTGCAAGTACGGTAAGAT 59.569 50.000 0.00 0.00 0.00 2.40
1763 1790 1.822990 CTCCCTGCAAGTACGGTAAGA 59.177 52.381 0.00 0.00 0.00 2.10
1767 1794 0.251653 TCTCTCCCTGCAAGTACGGT 60.252 55.000 0.00 0.00 0.00 4.83
1769 1796 1.178276 AGTCTCTCCCTGCAAGTACG 58.822 55.000 0.00 0.00 0.00 3.67
1780 1807 6.210584 CCCATCTAATCCTCTTTAGTCTCTCC 59.789 46.154 0.00 0.00 32.21 3.71
1784 1811 6.444704 TGTCCCATCTAATCCTCTTTAGTCT 58.555 40.000 0.00 0.00 32.21 3.24
1785 1812 6.732896 TGTCCCATCTAATCCTCTTTAGTC 57.267 41.667 0.00 0.00 32.21 2.59
1786 1813 7.510675 TTTGTCCCATCTAATCCTCTTTAGT 57.489 36.000 0.00 0.00 32.21 2.24
1787 1814 8.986929 AATTTGTCCCATCTAATCCTCTTTAG 57.013 34.615 0.00 0.00 0.00 1.85
1788 1815 9.189156 CAAATTTGTCCCATCTAATCCTCTTTA 57.811 33.333 10.15 0.00 0.00 1.85
1789 1816 7.895429 TCAAATTTGTCCCATCTAATCCTCTTT 59.105 33.333 17.47 0.00 0.00 2.52
1790 1817 7.413446 TCAAATTTGTCCCATCTAATCCTCTT 58.587 34.615 17.47 0.00 0.00 2.85
1791 1818 6.973642 TCAAATTTGTCCCATCTAATCCTCT 58.026 36.000 17.47 0.00 0.00 3.69
1792 1819 7.340487 ACTTCAAATTTGTCCCATCTAATCCTC 59.660 37.037 17.47 0.00 0.00 3.71
1793 1820 7.184862 ACTTCAAATTTGTCCCATCTAATCCT 58.815 34.615 17.47 0.00 0.00 3.24
1794 1821 7.410120 ACTTCAAATTTGTCCCATCTAATCC 57.590 36.000 17.47 0.00 0.00 3.01
1795 1822 7.484140 GGACTTCAAATTTGTCCCATCTAATC 58.516 38.462 17.47 3.37 43.10 1.75
1796 1823 7.410120 GGACTTCAAATTTGTCCCATCTAAT 57.590 36.000 17.47 0.00 43.10 1.73
1797 1824 6.834168 GGACTTCAAATTTGTCCCATCTAA 57.166 37.500 17.47 1.79 43.10 2.10
1804 1831 2.510613 TCCGGGACTTCAAATTTGTCC 58.489 47.619 17.47 16.04 46.83 4.02
1805 1832 4.783764 AATCCGGGACTTCAAATTTGTC 57.216 40.909 17.47 8.22 0.00 3.18
1806 1833 6.850752 ATAAATCCGGGACTTCAAATTTGT 57.149 33.333 17.47 0.00 0.00 2.83
1807 1834 7.096551 ACAATAAATCCGGGACTTCAAATTTG 58.903 34.615 12.15 12.15 0.00 2.32
1808 1835 7.239763 ACAATAAATCCGGGACTTCAAATTT 57.760 32.000 0.00 0.00 0.00 1.82
1809 1836 6.850752 ACAATAAATCCGGGACTTCAAATT 57.149 33.333 0.00 0.00 0.00 1.82
1810 1837 7.116736 ACTACAATAAATCCGGGACTTCAAAT 58.883 34.615 0.00 0.00 0.00 2.32
1811 1838 6.478129 ACTACAATAAATCCGGGACTTCAAA 58.522 36.000 0.00 0.00 0.00 2.69
1812 1839 6.057321 ACTACAATAAATCCGGGACTTCAA 57.943 37.500 0.00 0.00 0.00 2.69
1813 1840 5.687166 ACTACAATAAATCCGGGACTTCA 57.313 39.130 0.00 0.00 0.00 3.02
1829 1856 8.406297 GCTGGACGATGATGATATATACTACAA 58.594 37.037 0.00 0.00 0.00 2.41
1830 1857 7.013369 GGCTGGACGATGATGATATATACTACA 59.987 40.741 0.00 0.00 0.00 2.74
1831 1858 7.013369 TGGCTGGACGATGATGATATATACTAC 59.987 40.741 0.00 0.00 0.00 2.73
1832 1859 7.060421 TGGCTGGACGATGATGATATATACTA 58.940 38.462 0.00 0.00 0.00 1.82
1833 1860 5.893824 TGGCTGGACGATGATGATATATACT 59.106 40.000 0.00 0.00 0.00 2.12
1834 1861 6.149129 TGGCTGGACGATGATGATATATAC 57.851 41.667 0.00 0.00 0.00 1.47
1835 1862 6.983906 ATGGCTGGACGATGATGATATATA 57.016 37.500 0.00 0.00 0.00 0.86
1836 1863 5.883685 ATGGCTGGACGATGATGATATAT 57.116 39.130 0.00 0.00 0.00 0.86
1837 1864 5.422145 CAATGGCTGGACGATGATGATATA 58.578 41.667 0.00 0.00 0.00 0.86
1838 1865 4.259356 CAATGGCTGGACGATGATGATAT 58.741 43.478 0.00 0.00 0.00 1.63
1839 1866 3.667360 CAATGGCTGGACGATGATGATA 58.333 45.455 0.00 0.00 0.00 2.15
1840 1867 2.501261 CAATGGCTGGACGATGATGAT 58.499 47.619 0.00 0.00 0.00 2.45
1841 1868 1.957668 CAATGGCTGGACGATGATGA 58.042 50.000 0.00 0.00 0.00 2.92
1842 1869 0.309922 GCAATGGCTGGACGATGATG 59.690 55.000 0.00 0.00 36.96 3.07
1843 1870 0.107066 TGCAATGGCTGGACGATGAT 60.107 50.000 0.00 0.00 41.91 2.45
1844 1871 0.745486 CTGCAATGGCTGGACGATGA 60.745 55.000 0.00 0.00 41.91 2.92
1845 1872 0.745486 TCTGCAATGGCTGGACGATG 60.745 55.000 0.00 0.00 41.91 3.84
1846 1873 0.182061 ATCTGCAATGGCTGGACGAT 59.818 50.000 0.00 0.00 41.91 3.73
1847 1874 0.745486 CATCTGCAATGGCTGGACGA 60.745 55.000 0.00 0.00 41.91 4.20
1848 1875 1.721664 CCATCTGCAATGGCTGGACG 61.722 60.000 12.87 0.00 41.91 4.79
1849 1876 2.112898 CCATCTGCAATGGCTGGAC 58.887 57.895 12.87 0.00 41.91 4.02
1850 1877 4.670199 CCATCTGCAATGGCTGGA 57.330 55.556 12.87 0.00 41.91 3.86
1855 1882 2.169769 AGATTTTGGCCATCTGCAATGG 59.830 45.455 6.09 18.26 43.89 3.16
1856 1883 3.118920 TGAGATTTTGGCCATCTGCAATG 60.119 43.478 12.12 0.00 43.89 2.82
1857 1884 3.101437 TGAGATTTTGGCCATCTGCAAT 58.899 40.909 12.12 3.51 43.89 3.56
1858 1885 2.527497 TGAGATTTTGGCCATCTGCAA 58.473 42.857 12.12 0.00 43.89 4.08
1859 1886 2.219080 TGAGATTTTGGCCATCTGCA 57.781 45.000 12.12 7.32 43.89 4.41
1860 1887 2.494870 ACTTGAGATTTTGGCCATCTGC 59.505 45.455 12.12 5.04 40.16 4.26
1861 1888 4.796038 AACTTGAGATTTTGGCCATCTG 57.204 40.909 12.12 1.08 30.70 2.90
1862 1889 5.813513 AAAACTTGAGATTTTGGCCATCT 57.186 34.783 6.09 6.67 33.42 2.90
1882 1909 3.970842 ACTGGTACTCCACAACCAAAAA 58.029 40.909 0.00 0.00 44.92 1.94
1883 1910 3.655615 ACTGGTACTCCACAACCAAAA 57.344 42.857 0.00 0.00 44.92 2.44
1884 1911 3.655615 AACTGGTACTCCACAACCAAA 57.344 42.857 0.00 0.00 44.92 3.28
1885 1912 4.453751 GTTAACTGGTACTCCACAACCAA 58.546 43.478 0.00 0.00 44.92 3.67
1886 1913 3.181452 GGTTAACTGGTACTCCACAACCA 60.181 47.826 5.42 0.00 43.47 3.67
1887 1914 3.181452 TGGTTAACTGGTACTCCACAACC 60.181 47.826 5.42 10.41 41.04 3.77
1888 1915 4.062991 CTGGTTAACTGGTACTCCACAAC 58.937 47.826 5.42 0.00 39.03 3.32
1889 1916 3.968649 TCTGGTTAACTGGTACTCCACAA 59.031 43.478 5.42 0.00 39.03 3.33
1890 1917 3.578978 TCTGGTTAACTGGTACTCCACA 58.421 45.455 5.42 0.00 39.03 4.17
1891 1918 4.612264 TTCTGGTTAACTGGTACTCCAC 57.388 45.455 5.42 0.00 39.03 4.02
1892 1919 4.041198 CCTTTCTGGTTAACTGGTACTCCA 59.959 45.833 5.42 0.00 42.05 3.86
1893 1920 4.285260 TCCTTTCTGGTTAACTGGTACTCC 59.715 45.833 5.42 0.00 37.07 3.85
1894 1921 5.479124 TCCTTTCTGGTTAACTGGTACTC 57.521 43.478 5.42 0.00 37.07 2.59
1895 1922 6.238648 CAATCCTTTCTGGTTAACTGGTACT 58.761 40.000 5.42 0.00 37.07 2.73
1896 1923 5.106277 GCAATCCTTTCTGGTTAACTGGTAC 60.106 44.000 5.42 0.00 37.07 3.34
1897 1924 5.007682 GCAATCCTTTCTGGTTAACTGGTA 58.992 41.667 5.42 0.00 37.07 3.25
1898 1925 3.826729 GCAATCCTTTCTGGTTAACTGGT 59.173 43.478 5.42 0.00 37.07 4.00
1899 1926 3.826157 TGCAATCCTTTCTGGTTAACTGG 59.174 43.478 5.42 0.00 37.07 4.00
1900 1927 5.010012 ACTTGCAATCCTTTCTGGTTAACTG 59.990 40.000 0.00 0.00 37.07 3.16
1901 1928 5.140454 ACTTGCAATCCTTTCTGGTTAACT 58.860 37.500 0.00 0.00 37.07 2.24
1902 1929 5.453567 ACTTGCAATCCTTTCTGGTTAAC 57.546 39.130 0.00 0.00 37.07 2.01
1903 1930 5.362430 ACAACTTGCAATCCTTTCTGGTTAA 59.638 36.000 0.00 0.00 37.07 2.01
1904 1931 4.892934 ACAACTTGCAATCCTTTCTGGTTA 59.107 37.500 0.00 0.00 37.07 2.85
1905 1932 3.706086 ACAACTTGCAATCCTTTCTGGTT 59.294 39.130 0.00 0.00 37.07 3.67
1906 1933 3.299503 ACAACTTGCAATCCTTTCTGGT 58.700 40.909 0.00 0.00 37.07 4.00
1907 1934 4.053295 CAACAACTTGCAATCCTTTCTGG 58.947 43.478 0.00 0.00 37.10 3.86
1908 1935 4.685924 ACAACAACTTGCAATCCTTTCTG 58.314 39.130 0.00 0.00 0.00 3.02
1909 1936 5.343307 AACAACAACTTGCAATCCTTTCT 57.657 34.783 0.00 0.00 0.00 2.52
1910 1937 4.507756 GGAACAACAACTTGCAATCCTTTC 59.492 41.667 0.00 0.00 30.54 2.62
1911 1938 4.081198 TGGAACAACAACTTGCAATCCTTT 60.081 37.500 11.60 0.00 32.73 3.11
1912 1939 3.450457 TGGAACAACAACTTGCAATCCTT 59.550 39.130 11.60 0.00 32.73 3.36
1913 1940 3.030291 TGGAACAACAACTTGCAATCCT 58.970 40.909 11.60 0.00 32.73 3.24
1914 1941 3.451141 TGGAACAACAACTTGCAATCC 57.549 42.857 0.00 1.61 31.92 3.01
1939 1966 6.721704 ACTTGCAATCCTTTCTCTCTTTTT 57.278 33.333 0.00 0.00 0.00 1.94
1940 1967 6.721704 AACTTGCAATCCTTTCTCTCTTTT 57.278 33.333 0.00 0.00 0.00 2.27
1941 1968 6.772716 TGTAACTTGCAATCCTTTCTCTCTTT 59.227 34.615 0.00 0.00 0.00 2.52
1942 1969 6.205658 GTGTAACTTGCAATCCTTTCTCTCTT 59.794 38.462 0.00 0.00 0.00 2.85
1943 1970 5.703130 GTGTAACTTGCAATCCTTTCTCTCT 59.297 40.000 0.00 0.00 0.00 3.10
1944 1971 5.389935 CGTGTAACTTGCAATCCTTTCTCTC 60.390 44.000 0.00 0.00 31.75 3.20
1945 1972 4.452455 CGTGTAACTTGCAATCCTTTCTCT 59.548 41.667 0.00 0.00 31.75 3.10
1946 1973 4.712763 CGTGTAACTTGCAATCCTTTCTC 58.287 43.478 0.00 0.00 31.75 2.87
1947 1974 3.058224 GCGTGTAACTTGCAATCCTTTCT 60.058 43.478 0.00 0.00 31.75 2.52
1948 1975 3.234386 GCGTGTAACTTGCAATCCTTTC 58.766 45.455 0.00 0.00 31.75 2.62
1949 1976 2.350388 CGCGTGTAACTTGCAATCCTTT 60.350 45.455 0.00 0.00 31.75 3.11
1950 1977 1.196808 CGCGTGTAACTTGCAATCCTT 59.803 47.619 0.00 0.00 31.75 3.36
1951 1978 0.796312 CGCGTGTAACTTGCAATCCT 59.204 50.000 0.00 0.00 31.75 3.24
1952 1979 0.515564 ACGCGTGTAACTTGCAATCC 59.484 50.000 12.93 0.00 31.75 3.01
1953 1980 1.070175 ACACGCGTGTAACTTGCAATC 60.070 47.619 41.14 0.00 42.90 2.67
1954 1981 0.941542 ACACGCGTGTAACTTGCAAT 59.058 45.000 41.14 14.57 42.90 3.56
1955 1982 0.727970 AACACGCGTGTAACTTGCAA 59.272 45.000 41.69 0.00 44.13 4.08
1956 1983 0.302288 GAACACGCGTGTAACTTGCA 59.698 50.000 41.69 0.00 44.13 4.08
1957 1984 0.302288 TGAACACGCGTGTAACTTGC 59.698 50.000 41.69 25.65 44.13 4.01
1958 1985 2.559872 CATGAACACGCGTGTAACTTG 58.440 47.619 41.69 34.43 44.13 3.16
1959 1986 1.070175 GCATGAACACGCGTGTAACTT 60.070 47.619 41.69 30.11 44.13 2.66
1960 1987 0.511221 GCATGAACACGCGTGTAACT 59.489 50.000 41.69 28.50 44.13 2.24
1961 1988 0.511221 AGCATGAACACGCGTGTAAC 59.489 50.000 41.69 34.52 44.13 2.50
1962 1989 0.787787 GAGCATGAACACGCGTGTAA 59.212 50.000 41.69 32.31 44.13 2.41
1963 1990 1.011968 GGAGCATGAACACGCGTGTA 61.012 55.000 41.69 29.21 44.13 2.90
1965 1992 1.840630 TTGGAGCATGAACACGCGTG 61.841 55.000 35.99 35.99 0.00 5.34
1966 1993 0.955428 ATTGGAGCATGAACACGCGT 60.955 50.000 5.58 5.58 0.00 6.01
1967 1994 0.168788 AATTGGAGCATGAACACGCG 59.831 50.000 3.53 3.53 0.00 6.01
1968 1995 2.792542 GCTAATTGGAGCATGAACACGC 60.793 50.000 0.00 0.00 42.36 5.34
1969 1996 2.679837 AGCTAATTGGAGCATGAACACG 59.320 45.455 0.00 0.00 45.43 4.49
1970 1997 4.260375 CGTAGCTAATTGGAGCATGAACAC 60.260 45.833 0.00 0.00 45.43 3.32
1971 1998 3.871006 CGTAGCTAATTGGAGCATGAACA 59.129 43.478 0.00 0.00 45.43 3.18
1972 1999 4.119862 TCGTAGCTAATTGGAGCATGAAC 58.880 43.478 0.00 0.00 45.43 3.18
1973 2000 4.400529 TCGTAGCTAATTGGAGCATGAA 57.599 40.909 0.00 0.00 45.43 2.57
1974 2001 4.400529 TTCGTAGCTAATTGGAGCATGA 57.599 40.909 0.00 0.00 45.43 3.07
1975 2002 4.572389 ACTTTCGTAGCTAATTGGAGCATG 59.428 41.667 0.00 0.00 45.43 4.06
1976 2003 4.770795 ACTTTCGTAGCTAATTGGAGCAT 58.229 39.130 0.00 0.00 45.43 3.79
1977 2004 4.202245 ACTTTCGTAGCTAATTGGAGCA 57.798 40.909 0.00 0.00 45.43 4.26
1978 2005 4.259850 CGAACTTTCGTAGCTAATTGGAGC 60.260 45.833 0.00 0.00 45.09 4.70
1979 2006 5.376947 CGAACTTTCGTAGCTAATTGGAG 57.623 43.478 0.00 0.00 45.09 3.86
1990 2017 8.980333 CCACATGGACATCTCGAACTTTCGTA 62.980 46.154 10.96 2.08 43.83 3.43
1992 2019 5.957092 CCACATGGACATCTCGAACTTTCG 61.957 50.000 4.97 4.97 44.37 3.46
1993 2020 3.372206 CCACATGGACATCTCGAACTTTC 59.628 47.826 0.00 0.00 37.39 2.62
1994 2021 3.007940 TCCACATGGACATCTCGAACTTT 59.992 43.478 0.00 0.00 39.78 2.66
1995 2022 2.567169 TCCACATGGACATCTCGAACTT 59.433 45.455 0.00 0.00 39.78 2.66
1996 2023 2.179427 TCCACATGGACATCTCGAACT 58.821 47.619 0.00 0.00 39.78 3.01
1997 2024 2.672961 TCCACATGGACATCTCGAAC 57.327 50.000 0.00 0.00 39.78 3.95
1998 2025 3.694043 TTTCCACATGGACATCTCGAA 57.306 42.857 0.00 0.00 45.39 3.71
1999 2026 3.694043 TTTTCCACATGGACATCTCGA 57.306 42.857 0.00 0.00 45.39 4.04
2029 2056 2.098117 CGGGCAAGGATGAGCTTTTAAG 59.902 50.000 0.00 0.00 0.00 1.85
2030 2057 2.091541 CGGGCAAGGATGAGCTTTTAA 58.908 47.619 0.00 0.00 0.00 1.52
2031 2058 1.280710 TCGGGCAAGGATGAGCTTTTA 59.719 47.619 0.00 0.00 0.00 1.52
2032 2059 0.038166 TCGGGCAAGGATGAGCTTTT 59.962 50.000 0.00 0.00 0.00 2.27
2033 2060 0.257039 ATCGGGCAAGGATGAGCTTT 59.743 50.000 0.00 0.00 0.00 3.51
2034 2061 0.257039 AATCGGGCAAGGATGAGCTT 59.743 50.000 0.00 0.00 0.00 3.74
2035 2062 0.257039 AAATCGGGCAAGGATGAGCT 59.743 50.000 0.00 0.00 0.00 4.09
2036 2063 1.066152 GAAAATCGGGCAAGGATGAGC 59.934 52.381 0.00 0.00 0.00 4.26
2037 2064 2.368439 TGAAAATCGGGCAAGGATGAG 58.632 47.619 0.00 0.00 0.00 2.90
2038 2065 2.505650 TGAAAATCGGGCAAGGATGA 57.494 45.000 0.00 0.00 0.00 2.92
2039 2066 2.223876 CCATGAAAATCGGGCAAGGATG 60.224 50.000 0.00 0.00 0.00 3.51
2040 2067 2.034124 CCATGAAAATCGGGCAAGGAT 58.966 47.619 0.00 0.00 0.00 3.24
2041 2068 1.272425 ACCATGAAAATCGGGCAAGGA 60.272 47.619 0.00 0.00 0.00 3.36
2042 2069 1.185315 ACCATGAAAATCGGGCAAGG 58.815 50.000 0.00 0.00 0.00 3.61
2043 2070 2.609350 CAACCATGAAAATCGGGCAAG 58.391 47.619 0.00 0.00 0.00 4.01
2044 2071 1.337635 GCAACCATGAAAATCGGGCAA 60.338 47.619 0.00 0.00 0.00 4.52
2045 2072 0.246086 GCAACCATGAAAATCGGGCA 59.754 50.000 0.00 0.00 0.00 5.36
2046 2073 0.460109 GGCAACCATGAAAATCGGGC 60.460 55.000 0.00 0.00 0.00 6.13
2047 2074 1.134946 GAGGCAACCATGAAAATCGGG 59.865 52.381 0.00 0.00 37.17 5.14
2048 2075 1.202177 CGAGGCAACCATGAAAATCGG 60.202 52.381 0.00 0.00 37.17 4.18
2049 2076 1.468520 ACGAGGCAACCATGAAAATCG 59.531 47.619 0.00 0.00 35.21 3.34
2050 2077 2.415893 CCACGAGGCAACCATGAAAATC 60.416 50.000 0.00 0.00 37.17 2.17
2051 2078 1.545582 CCACGAGGCAACCATGAAAAT 59.454 47.619 0.00 0.00 37.17 1.82
2052 2079 0.958091 CCACGAGGCAACCATGAAAA 59.042 50.000 0.00 0.00 37.17 2.29
2053 2080 0.179004 ACCACGAGGCAACCATGAAA 60.179 50.000 0.00 0.00 39.06 2.69
2054 2081 0.888736 CACCACGAGGCAACCATGAA 60.889 55.000 0.00 0.00 39.06 2.57
2055 2082 1.302431 CACCACGAGGCAACCATGA 60.302 57.895 0.00 0.00 39.06 3.07
2056 2083 1.172180 AACACCACGAGGCAACCATG 61.172 55.000 0.00 0.00 39.06 3.66
2057 2084 1.150536 AACACCACGAGGCAACCAT 59.849 52.632 0.00 0.00 39.06 3.55
2058 2085 1.821759 CAACACCACGAGGCAACCA 60.822 57.895 0.00 0.00 39.06 3.67
2059 2086 1.381165 AACAACACCACGAGGCAACC 61.381 55.000 0.00 0.00 39.06 3.77
2060 2087 0.454196 AAACAACACCACGAGGCAAC 59.546 50.000 0.00 0.00 39.06 4.17
2061 2088 0.453793 CAAACAACACCACGAGGCAA 59.546 50.000 0.00 0.00 39.06 4.52
2062 2089 0.678366 ACAAACAACACCACGAGGCA 60.678 50.000 0.00 0.00 39.06 4.75
2063 2090 0.248458 CACAAACAACACCACGAGGC 60.248 55.000 0.00 0.00 39.06 4.70
2064 2091 0.248458 GCACAAACAACACCACGAGG 60.248 55.000 0.00 0.00 42.21 4.63
2065 2092 0.588730 CGCACAAACAACACCACGAG 60.589 55.000 0.00 0.00 0.00 4.18
2066 2093 1.425825 CGCACAAACAACACCACGA 59.574 52.632 0.00 0.00 0.00 4.35
2067 2094 2.220887 GCGCACAAACAACACCACG 61.221 57.895 0.30 0.00 0.00 4.94
2068 2095 0.734253 TTGCGCACAAACAACACCAC 60.734 50.000 11.12 0.00 31.21 4.16
2069 2096 0.174389 ATTGCGCACAAACAACACCA 59.826 45.000 11.12 0.00 39.77 4.17
2070 2097 1.285578 AATTGCGCACAAACAACACC 58.714 45.000 11.12 0.00 39.77 4.16
2071 2098 3.382015 AAAATTGCGCACAAACAACAC 57.618 38.095 11.12 0.00 39.77 3.32
2072 2099 3.307242 GGTAAAATTGCGCACAAACAACA 59.693 39.130 11.12 0.00 39.77 3.33
2073 2100 3.600460 CGGTAAAATTGCGCACAAACAAC 60.600 43.478 11.12 4.37 39.77 3.32
2074 2101 2.535984 CGGTAAAATTGCGCACAAACAA 59.464 40.909 11.12 0.00 39.77 2.83
2075 2102 2.120232 CGGTAAAATTGCGCACAAACA 58.880 42.857 11.12 0.00 39.77 2.83
2076 2103 1.453900 CCGGTAAAATTGCGCACAAAC 59.546 47.619 11.12 4.14 39.77 2.93
2077 2104 1.337071 TCCGGTAAAATTGCGCACAAA 59.663 42.857 11.12 0.00 39.77 2.83
2078 2105 0.952280 TCCGGTAAAATTGCGCACAA 59.048 45.000 11.12 0.00 40.87 3.33
2079 2106 0.952280 TTCCGGTAAAATTGCGCACA 59.048 45.000 11.12 1.31 0.00 4.57
2080 2107 1.717113 GTTTCCGGTAAAATTGCGCAC 59.283 47.619 11.12 0.00 0.00 5.34
2081 2108 1.337071 TGTTTCCGGTAAAATTGCGCA 59.663 42.857 5.66 5.66 0.00 6.09
2082 2109 1.717113 GTGTTTCCGGTAAAATTGCGC 59.283 47.619 0.00 0.00 0.00 6.09
2083 2110 2.287668 TGGTGTTTCCGGTAAAATTGCG 60.288 45.455 0.00 0.00 39.52 4.85
2084 2111 3.372660 TGGTGTTTCCGGTAAAATTGC 57.627 42.857 0.00 0.00 39.52 3.56
2085 2112 4.742659 CACTTGGTGTTTCCGGTAAAATTG 59.257 41.667 0.00 0.00 39.52 2.32
2086 2113 4.738243 GCACTTGGTGTTTCCGGTAAAATT 60.738 41.667 0.00 0.00 39.52 1.82
2087 2114 3.243602 GCACTTGGTGTTTCCGGTAAAAT 60.244 43.478 0.00 0.00 39.52 1.82
2088 2115 2.099427 GCACTTGGTGTTTCCGGTAAAA 59.901 45.455 0.00 0.00 39.52 1.52
2089 2116 1.677052 GCACTTGGTGTTTCCGGTAAA 59.323 47.619 0.00 0.00 39.52 2.01
2090 2117 1.310904 GCACTTGGTGTTTCCGGTAA 58.689 50.000 0.00 0.00 39.52 2.85
2091 2118 0.180642 TGCACTTGGTGTTTCCGGTA 59.819 50.000 0.00 0.00 39.52 4.02
2092 2119 1.077357 TGCACTTGGTGTTTCCGGT 60.077 52.632 0.00 0.00 39.52 5.28
2093 2120 1.654220 CTGCACTTGGTGTTTCCGG 59.346 57.895 0.00 0.00 39.52 5.14
2094 2121 1.008538 GCTGCACTTGGTGTTTCCG 60.009 57.895 0.00 0.00 39.52 4.30
2095 2122 1.008538 CGCTGCACTTGGTGTTTCC 60.009 57.895 0.00 0.00 35.75 3.13
2096 2123 0.100503 AACGCTGCACTTGGTGTTTC 59.899 50.000 0.00 0.00 35.75 2.78
2097 2124 0.179140 CAACGCTGCACTTGGTGTTT 60.179 50.000 0.00 0.00 35.75 2.83
2098 2125 1.029408 TCAACGCTGCACTTGGTGTT 61.029 50.000 0.00 0.00 35.75 3.32
2099 2126 1.451207 TCAACGCTGCACTTGGTGT 60.451 52.632 0.00 0.00 35.75 4.16
2100 2127 1.009675 GTCAACGCTGCACTTGGTG 60.010 57.895 0.00 0.00 36.51 4.17
2101 2128 1.029408 TTGTCAACGCTGCACTTGGT 61.029 50.000 0.00 0.00 0.00 3.67
2102 2129 0.592247 GTTGTCAACGCTGCACTTGG 60.592 55.000 0.00 0.00 0.00 3.61
2103 2130 0.098552 TGTTGTCAACGCTGCACTTG 59.901 50.000 11.03 0.37 0.00 3.16
2104 2131 1.002468 GATGTTGTCAACGCTGCACTT 60.002 47.619 11.03 0.00 0.00 3.16
2105 2132 0.588252 GATGTTGTCAACGCTGCACT 59.412 50.000 11.03 0.00 0.00 4.40
2106 2133 0.307453 TGATGTTGTCAACGCTGCAC 59.693 50.000 11.03 0.00 32.78 4.57
2107 2134 0.307453 GTGATGTTGTCAACGCTGCA 59.693 50.000 11.03 3.83 38.90 4.41
2108 2135 0.307453 TGTGATGTTGTCAACGCTGC 59.693 50.000 11.03 2.87 38.90 5.25
2109 2136 1.330213 TGTGTGATGTTGTCAACGCTG 59.670 47.619 11.03 0.00 38.90 5.18
2110 2137 1.330521 GTGTGTGATGTTGTCAACGCT 59.669 47.619 11.03 0.96 38.90 5.07
2111 2138 1.330521 AGTGTGTGATGTTGTCAACGC 59.669 47.619 11.03 6.36 38.90 4.84
2112 2139 3.802139 AGTAGTGTGTGATGTTGTCAACG 59.198 43.478 11.03 0.00 38.90 4.10
2113 2140 5.107453 GCTAGTAGTGTGTGATGTTGTCAAC 60.107 44.000 8.86 8.86 38.90 3.18
2114 2141 4.988540 GCTAGTAGTGTGTGATGTTGTCAA 59.011 41.667 0.00 0.00 38.90 3.18
2115 2142 4.038642 TGCTAGTAGTGTGTGATGTTGTCA 59.961 41.667 0.00 0.00 0.00 3.58
2116 2143 4.386049 GTGCTAGTAGTGTGTGATGTTGTC 59.614 45.833 0.00 0.00 0.00 3.18
2117 2144 4.307432 GTGCTAGTAGTGTGTGATGTTGT 58.693 43.478 0.00 0.00 0.00 3.32
2118 2145 3.364920 CGTGCTAGTAGTGTGTGATGTTG 59.635 47.826 0.00 0.00 0.00 3.33
2119 2146 3.005472 ACGTGCTAGTAGTGTGTGATGTT 59.995 43.478 0.00 0.00 0.00 2.71
2120 2147 2.557056 ACGTGCTAGTAGTGTGTGATGT 59.443 45.455 0.00 0.00 0.00 3.06
2121 2148 3.217599 ACGTGCTAGTAGTGTGTGATG 57.782 47.619 0.00 0.00 0.00 3.07
2122 2149 3.754850 TGTACGTGCTAGTAGTGTGTGAT 59.245 43.478 4.97 0.00 0.00 3.06
2123 2150 3.140623 TGTACGTGCTAGTAGTGTGTGA 58.859 45.455 4.97 0.00 0.00 3.58
2124 2151 3.547649 TGTACGTGCTAGTAGTGTGTG 57.452 47.619 4.97 0.00 0.00 3.82
2125 2152 4.940046 AGTATGTACGTGCTAGTAGTGTGT 59.060 41.667 3.59 0.00 0.00 3.72
2126 2153 5.064325 TGAGTATGTACGTGCTAGTAGTGTG 59.936 44.000 5.60 0.00 0.00 3.82
2127 2154 5.181009 TGAGTATGTACGTGCTAGTAGTGT 58.819 41.667 5.60 0.00 0.00 3.55
2128 2155 5.729974 TGAGTATGTACGTGCTAGTAGTG 57.270 43.478 5.60 0.00 0.00 2.74
2129 2156 7.215789 AGTATGAGTATGTACGTGCTAGTAGT 58.784 38.462 5.60 2.97 0.00 2.73
2130 2157 7.384387 TGAGTATGAGTATGTACGTGCTAGTAG 59.616 40.741 5.60 0.00 0.00 2.57
2131 2158 7.170489 GTGAGTATGAGTATGTACGTGCTAGTA 59.830 40.741 5.60 0.04 0.00 1.82
2132 2159 6.018098 GTGAGTATGAGTATGTACGTGCTAGT 60.018 42.308 5.60 0.95 0.00 2.57
2133 2160 6.018180 TGTGAGTATGAGTATGTACGTGCTAG 60.018 42.308 5.60 0.00 0.00 3.42
2134 2161 5.818857 TGTGAGTATGAGTATGTACGTGCTA 59.181 40.000 5.60 0.00 0.00 3.49
2135 2162 4.638865 TGTGAGTATGAGTATGTACGTGCT 59.361 41.667 5.26 5.26 0.00 4.40
2136 2163 4.733887 GTGTGAGTATGAGTATGTACGTGC 59.266 45.833 0.00 0.00 0.00 5.34
2137 2164 6.120378 AGTGTGAGTATGAGTATGTACGTG 57.880 41.667 0.00 0.00 0.00 4.49
2138 2165 7.046652 ACTAGTGTGAGTATGAGTATGTACGT 58.953 38.462 0.00 0.00 0.00 3.57
2139 2166 7.479897 ACTAGTGTGAGTATGAGTATGTACG 57.520 40.000 0.00 0.00 0.00 3.67
2140 2167 8.991026 CCTACTAGTGTGAGTATGAGTATGTAC 58.009 40.741 5.39 0.00 31.56 2.90
2141 2168 8.931568 TCCTACTAGTGTGAGTATGAGTATGTA 58.068 37.037 5.39 0.00 31.56 2.29
2142 2169 7.803131 TCCTACTAGTGTGAGTATGAGTATGT 58.197 38.462 5.39 0.00 31.56 2.29
2143 2170 8.678593 TTCCTACTAGTGTGAGTATGAGTATG 57.321 38.462 5.39 0.00 31.04 2.39
2144 2171 9.696572 TTTTCCTACTAGTGTGAGTATGAGTAT 57.303 33.333 5.39 0.00 31.04 2.12
2145 2172 9.175312 CTTTTCCTACTAGTGTGAGTATGAGTA 57.825 37.037 5.39 0.00 31.04 2.59
2146 2173 7.122948 CCTTTTCCTACTAGTGTGAGTATGAGT 59.877 40.741 5.39 0.00 31.04 3.41
2147 2174 7.416890 CCCTTTTCCTACTAGTGTGAGTATGAG 60.417 44.444 5.39 0.00 31.04 2.90
2148 2175 6.380274 CCCTTTTCCTACTAGTGTGAGTATGA 59.620 42.308 5.39 0.00 31.56 2.15
2149 2176 6.407074 CCCCTTTTCCTACTAGTGTGAGTATG 60.407 46.154 5.39 0.00 31.56 2.39
2150 2177 5.661759 CCCCTTTTCCTACTAGTGTGAGTAT 59.338 44.000 5.39 0.00 31.56 2.12
2151 2178 5.021458 CCCCTTTTCCTACTAGTGTGAGTA 58.979 45.833 5.39 0.00 0.00 2.59
2152 2179 3.838903 CCCCTTTTCCTACTAGTGTGAGT 59.161 47.826 5.39 0.00 0.00 3.41
2153 2180 3.369576 GCCCCTTTTCCTACTAGTGTGAG 60.370 52.174 5.39 0.00 0.00 3.51
2154 2181 2.570302 GCCCCTTTTCCTACTAGTGTGA 59.430 50.000 5.39 0.00 0.00 3.58
2358 2385 1.095228 CGCGTGGATGCCTATTGGTT 61.095 55.000 0.00 0.00 35.27 3.67
2386 2413 1.131883 CAAAAATCTCAGCTCCTGCCG 59.868 52.381 0.00 0.00 40.80 5.69
2430 2460 1.074090 CCCCAAAACCCCAAACCCT 60.074 57.895 0.00 0.00 0.00 4.34
2828 2862 5.977489 AAGAACAATTAAGTAGGGTTGGC 57.023 39.130 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.