Multiple sequence alignment - TraesCS4D01G297700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G297700 chr4D 100.000 2595 0 0 1 2595 467115682 467118276 0.000000e+00 4793.0
1 TraesCS4D01G297700 chr4D 100.000 2497 0 0 2836 5332 467118517 467121013 0.000000e+00 4612.0
2 TraesCS4D01G297700 chr4D 94.037 872 49 3 1072 1943 466334368 466335236 0.000000e+00 1319.0
3 TraesCS4D01G297700 chr4D 93.807 872 53 1 1072 1943 466403356 466404226 0.000000e+00 1310.0
4 TraesCS4D01G297700 chr4D 88.571 805 79 11 3480 4280 466294495 466295290 0.000000e+00 965.0
5 TraesCS4D01G297700 chr4D 87.639 809 86 12 3480 4280 466336360 466337162 0.000000e+00 928.0
6 TraesCS4D01G297700 chr4D 80.163 736 103 19 4487 5199 550088 549373 1.320000e-140 510.0
7 TraesCS4D01G297700 chr4D 92.308 195 13 2 3186 3379 466728662 466728469 5.260000e-70 276.0
8 TraesCS4D01G297700 chr4D 83.871 93 12 3 5110 5200 505493860 505493951 9.510000e-13 86.1
9 TraesCS4D01G297700 chr4B 91.914 1954 98 19 672 2593 584846687 584848612 0.000000e+00 2678.0
10 TraesCS4D01G297700 chr4B 91.611 1955 97 21 672 2593 584871980 584873900 0.000000e+00 2639.0
11 TraesCS4D01G297700 chr4B 91.611 1955 97 21 672 2593 584897360 584899280 0.000000e+00 2639.0
12 TraesCS4D01G297700 chr4B 93.120 1032 60 6 2836 3865 584848628 584849650 0.000000e+00 1502.0
13 TraesCS4D01G297700 chr4B 92.829 1032 63 6 2836 3865 584899296 584900318 0.000000e+00 1485.0
14 TraesCS4D01G297700 chr4B 92.733 1032 64 6 2836 3865 584873916 584874938 0.000000e+00 1480.0
15 TraesCS4D01G297700 chr4B 92.465 929 63 5 1021 1943 584125848 584126775 0.000000e+00 1321.0
16 TraesCS4D01G297700 chr4B 92.357 929 64 5 1021 1943 584054483 584055410 0.000000e+00 1315.0
17 TraesCS4D01G297700 chr4B 86.881 808 88 13 3482 4279 584527746 584526947 0.000000e+00 889.0
18 TraesCS4D01G297700 chr4B 92.143 420 26 2 3878 4297 584875304 584875716 2.140000e-163 586.0
19 TraesCS4D01G297700 chr4B 91.905 420 27 2 3878 4297 584850016 584850428 9.950000e-162 580.0
20 TraesCS4D01G297700 chr4B 91.905 420 27 2 3878 4297 584900684 584901096 9.950000e-162 580.0
21 TraesCS4D01G297700 chr4B 84.436 514 51 18 4368 4866 584852988 584853487 3.740000e-131 479.0
22 TraesCS4D01G297700 chr4B 84.436 514 51 18 4368 4866 584878292 584878791 3.740000e-131 479.0
23 TraesCS4D01G297700 chr4B 84.016 513 55 16 4368 4866 584903671 584904170 8.090000e-128 468.0
24 TraesCS4D01G297700 chr4B 95.703 256 8 2 313 567 584871736 584871989 4.970000e-110 409.0
25 TraesCS4D01G297700 chr4B 95.703 256 8 2 313 567 584897116 584897369 4.970000e-110 409.0
26 TraesCS4D01G297700 chr4B 91.597 238 20 0 4878 5115 584878831 584879068 3.980000e-86 329.0
27 TraesCS4D01G297700 chr4B 91.597 238 20 0 4878 5115 584904210 584904447 3.980000e-86 329.0
28 TraesCS4D01G297700 chr4B 91.176 238 21 0 4878 5115 584853527 584853764 1.850000e-84 324.0
29 TraesCS4D01G297700 chr4B 92.857 196 12 2 3185 3379 584528185 584527991 3.140000e-72 283.0
30 TraesCS4D01G297700 chr4B 89.785 186 9 6 14 194 584804852 584805032 4.150000e-56 230.0
31 TraesCS4D01G297700 chr4B 95.238 147 4 2 313 458 584842910 584843054 4.150000e-56 230.0
32 TraesCS4D01G297700 chr4B 94.215 121 5 1 183 303 584842811 584842929 3.280000e-42 183.0
33 TraesCS4D01G297700 chr4B 94.215 121 5 1 183 303 584871637 584871755 3.280000e-42 183.0
34 TraesCS4D01G297700 chr4B 94.215 121 5 1 183 303 584897017 584897135 3.280000e-42 183.0
35 TraesCS4D01G297700 chr4B 95.575 113 5 0 455 567 584846584 584846696 1.180000e-41 182.0
36 TraesCS4D01G297700 chr4B 81.720 93 14 3 5110 5200 100941383 100941292 2.060000e-09 75.0
37 TraesCS4D01G297700 chr4B 90.909 55 1 2 4309 4361 584901139 584901191 2.660000e-08 71.3
38 TraesCS4D01G297700 chr4B 89.091 55 2 2 4309 4361 584850471 584850523 1.240000e-06 65.8
39 TraesCS4D01G297700 chr4B 89.091 55 2 2 4309 4361 584875759 584875811 1.240000e-06 65.8
40 TraesCS4D01G297700 chr4A 93.067 1428 74 12 930 2334 4005750 4004325 0.000000e+00 2065.0
41 TraesCS4D01G297700 chr4A 93.761 1154 62 5 3165 4312 4002714 4001565 0.000000e+00 1724.0
42 TraesCS4D01G297700 chr4A 91.901 926 61 5 1021 1943 4196436 4195522 0.000000e+00 1282.0
43 TraesCS4D01G297700 chr4A 91.387 894 46 13 1053 1943 4157837 4158702 0.000000e+00 1195.0
44 TraesCS4D01G297700 chr4A 88.476 807 76 14 3480 4280 4194113 4193318 0.000000e+00 959.0
45 TraesCS4D01G297700 chr4A 88.039 811 79 14 3480 4279 4239079 4238276 0.000000e+00 944.0
46 TraesCS4D01G297700 chr4A 80.603 464 57 9 4878 5332 4000460 4000021 1.430000e-85 327.0
47 TraesCS4D01G297700 chr4A 92.347 196 13 2 3186 3380 4159968 4160162 1.460000e-70 278.0
48 TraesCS4D01G297700 chr4A 87.037 216 26 2 2337 2550 4003785 4003570 5.340000e-60 243.0
49 TraesCS4D01G297700 chr4A 96.154 104 4 0 717 820 4006093 4005990 2.550000e-38 171.0
50 TraesCS4D01G297700 chr4A 94.118 85 4 1 4375 4458 4001042 4000958 1.560000e-25 128.0
51 TraesCS4D01G297700 chr4A 94.048 84 0 2 838 921 4005881 4005803 7.250000e-24 122.0
52 TraesCS4D01G297700 chr4A 90.476 84 8 0 4393 4476 714426219 714426302 1.570000e-20 111.0
53 TraesCS4D01G297700 chr4A 89.855 69 7 0 2836 2904 4002815 4002747 7.360000e-14 89.8
54 TraesCS4D01G297700 chr4A 84.810 79 5 3 4309 4385 4001511 4001438 7.410000e-09 73.1
55 TraesCS4D01G297700 chrUn 95.659 668 29 0 3198 3865 346800962 346801629 0.000000e+00 1074.0
56 TraesCS4D01G297700 chrUn 95.659 668 29 0 3198 3865 363496383 363495716 0.000000e+00 1074.0
57 TraesCS4D01G297700 chrUn 91.905 420 27 2 3878 4297 346801995 346802407 9.950000e-162 580.0
58 TraesCS4D01G297700 chrUn 91.905 420 27 2 3878 4297 363495350 363494938 9.950000e-162 580.0
59 TraesCS4D01G297700 chrUn 84.436 514 51 18 4368 4866 334407367 334407866 3.740000e-131 479.0
60 TraesCS4D01G297700 chrUn 91.597 238 20 0 4878 5115 334407906 334408143 3.980000e-86 329.0
61 TraesCS4D01G297700 chrUn 90.909 55 1 2 4309 4361 346802450 346802502 2.660000e-08 71.3
62 TraesCS4D01G297700 chrUn 89.091 55 2 2 4309 4361 363494895 363494843 1.240000e-06 65.8
63 TraesCS4D01G297700 chrUn 89.091 55 2 2 4309 4361 413819974 413819922 1.240000e-06 65.8
64 TraesCS4D01G297700 chrUn 89.091 55 2 2 4309 4361 468579726 468579778 1.240000e-06 65.8
65 TraesCS4D01G297700 chr7B 81.572 738 97 22 4487 5199 234915624 234914901 1.670000e-159 573.0
66 TraesCS4D01G297700 chr3B 81.361 735 107 18 4489 5200 819924226 819924953 5.990000e-159 571.0
67 TraesCS4D01G297700 chr3B 80.144 695 109 21 4489 5161 457569709 457569022 4.800000e-135 492.0
68 TraesCS4D01G297700 chr3B 88.950 181 17 3 2986 3166 142240383 142240206 2.500000e-53 220.0
69 TraesCS4D01G297700 chr3B 89.080 174 16 3 2993 3166 142248284 142248114 4.180000e-51 213.0
70 TraesCS4D01G297700 chr3B 90.909 88 8 0 4393 4480 814497891 814497978 9.380000e-23 119.0
71 TraesCS4D01G297700 chr3B 87.500 88 11 0 4393 4480 819924089 819924176 9.450000e-18 102.0
72 TraesCS4D01G297700 chr7A 81.301 738 105 22 4487 5199 275975097 275974368 7.750000e-158 568.0
73 TraesCS4D01G297700 chr7A 90.164 183 16 2 2982 3164 621569126 621568946 2.480000e-58 237.0
74 TraesCS4D01G297700 chr5B 81.224 735 108 18 4489 5200 149382884 149382157 2.790000e-157 566.0
75 TraesCS4D01G297700 chr5B 87.234 188 20 4 2982 3167 445450050 445449865 1.500000e-50 211.0
76 TraesCS4D01G297700 chr6D 81.063 734 109 18 4489 5199 464578141 464577415 4.660000e-155 558.0
77 TraesCS4D01G297700 chr6D 91.463 82 7 0 4399 4480 464578272 464578191 4.360000e-21 113.0
78 TraesCS4D01G297700 chr7D 79.833 719 120 17 4484 5200 11423748 11424443 7.970000e-138 501.0
79 TraesCS4D01G297700 chr2B 81.411 581 79 20 4643 5200 400598846 400598272 1.050000e-121 448.0
80 TraesCS4D01G297700 chr2B 90.476 84 8 0 4393 4476 784672669 784672752 1.570000e-20 111.0
81 TraesCS4D01G297700 chr2B 87.500 88 9 1 4393 4480 51080316 51080231 3.400000e-17 100.0
82 TraesCS4D01G297700 chr2B 90.000 70 7 0 2340 2409 554288589 554288658 2.050000e-14 91.6
83 TraesCS4D01G297700 chr2B 81.720 93 14 3 5110 5200 36628055 36627964 2.060000e-09 75.0
84 TraesCS4D01G297700 chr1D 85.837 233 27 4 2331 2558 343363767 343363536 5.340000e-60 243.0
85 TraesCS4D01G297700 chr2A 90.323 186 14 4 2981 3164 656999486 656999303 1.920000e-59 241.0
86 TraesCS4D01G297700 chr2A 88.587 184 17 4 2983 3165 14824538 14824718 2.500000e-53 220.0
87 TraesCS4D01G297700 chr2A 87.500 88 9 1 4393 4480 644223136 644223051 3.400000e-17 100.0
88 TraesCS4D01G297700 chr1A 84.549 233 30 3 2331 2558 443195674 443195443 5.370000e-55 226.0
89 TraesCS4D01G297700 chr1B 83.843 229 33 4 2331 2558 460580665 460580440 1.160000e-51 215.0
90 TraesCS4D01G297700 chr1B 83.945 218 32 3 2359 2575 394852120 394851905 7.000000e-49 206.0
91 TraesCS4D01G297700 chr3D 95.050 101 5 0 571 671 19362946 19363046 5.530000e-35 159.0
92 TraesCS4D01G297700 chr5A 89.796 98 10 0 575 672 607806551 607806648 5.610000e-25 126.0
93 TraesCS4D01G297700 chr3A 87.500 88 10 1 4393 4480 510304926 510305012 3.400000e-17 100.0
94 TraesCS4D01G297700 chr2D 84.615 91 12 2 5110 5198 194062180 194062090 7.360000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G297700 chr4D 467115682 467121013 5331 False 4702.500000 4793 100.000000 1 5332 2 chr4D.!!$F5 5331
1 TraesCS4D01G297700 chr4D 466403356 466404226 870 False 1310.000000 1310 93.807000 1072 1943 1 chr4D.!!$F2 871
2 TraesCS4D01G297700 chr4D 466334368 466337162 2794 False 1123.500000 1319 90.838000 1072 4280 2 chr4D.!!$F4 3208
3 TraesCS4D01G297700 chr4D 466294495 466295290 795 False 965.000000 965 88.571000 3480 4280 1 chr4D.!!$F1 800
4 TraesCS4D01G297700 chr4D 549373 550088 715 True 510.000000 510 80.163000 4487 5199 1 chr4D.!!$R1 712
5 TraesCS4D01G297700 chr4B 584125848 584126775 927 False 1321.000000 1321 92.465000 1021 1943 1 chr4B.!!$F2 922
6 TraesCS4D01G297700 chr4B 584054483 584055410 927 False 1315.000000 1315 92.357000 1021 1943 1 chr4B.!!$F1 922
7 TraesCS4D01G297700 chr4B 584871637 584879068 7431 False 771.350000 2639 91.441125 183 5115 8 chr4B.!!$F5 4932
8 TraesCS4D01G297700 chr4B 584897017 584904447 7430 False 770.537500 2639 91.598125 183 5115 8 chr4B.!!$F6 4932
9 TraesCS4D01G297700 chr4B 584842811 584853764 10953 False 691.533333 2678 91.852222 183 5115 9 chr4B.!!$F4 4932
10 TraesCS4D01G297700 chr4B 584526947 584528185 1238 True 586.000000 889 89.869000 3185 4279 2 chr4B.!!$R2 1094
11 TraesCS4D01G297700 chr4A 4193318 4196436 3118 True 1120.500000 1282 90.188500 1021 4280 2 chr4A.!!$R3 3259
12 TraesCS4D01G297700 chr4A 4238276 4239079 803 True 944.000000 944 88.039000 3480 4279 1 chr4A.!!$R1 799
13 TraesCS4D01G297700 chr4A 4157837 4160162 2325 False 736.500000 1195 91.867000 1053 3380 2 chr4A.!!$F2 2327
14 TraesCS4D01G297700 chr4A 4000021 4006093 6072 True 549.211111 2065 90.383667 717 5332 9 chr4A.!!$R2 4615
15 TraesCS4D01G297700 chrUn 346800962 346802502 1540 False 575.100000 1074 92.824333 3198 4361 3 chrUn.!!$F3 1163
16 TraesCS4D01G297700 chrUn 363494843 363496383 1540 True 573.266667 1074 92.218333 3198 4361 3 chrUn.!!$R2 1163
17 TraesCS4D01G297700 chrUn 334407367 334408143 776 False 404.000000 479 88.016500 4368 5115 2 chrUn.!!$F2 747
18 TraesCS4D01G297700 chr7B 234914901 234915624 723 True 573.000000 573 81.572000 4487 5199 1 chr7B.!!$R1 712
19 TraesCS4D01G297700 chr3B 457569022 457569709 687 True 492.000000 492 80.144000 4489 5161 1 chr3B.!!$R3 672
20 TraesCS4D01G297700 chr3B 819924089 819924953 864 False 336.500000 571 84.430500 4393 5200 2 chr3B.!!$F2 807
21 TraesCS4D01G297700 chr7A 275974368 275975097 729 True 568.000000 568 81.301000 4487 5199 1 chr7A.!!$R1 712
22 TraesCS4D01G297700 chr5B 149382157 149382884 727 True 566.000000 566 81.224000 4489 5200 1 chr5B.!!$R1 711
23 TraesCS4D01G297700 chr6D 464577415 464578272 857 True 335.500000 558 86.263000 4399 5199 2 chr6D.!!$R1 800
24 TraesCS4D01G297700 chr7D 11423748 11424443 695 False 501.000000 501 79.833000 4484 5200 1 chr7D.!!$F1 716
25 TraesCS4D01G297700 chr2B 400598272 400598846 574 True 448.000000 448 81.411000 4643 5200 1 chr2B.!!$R3 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
609 4144 0.032615 TGACAGGTGGGCCAAGTTTT 60.033 50.0 8.40 0.00 37.19 2.43 F
616 4151 0.250989 TGGGCCAAGTTTTAGTCGGG 60.251 55.0 2.13 0.00 0.00 5.14 F
620 4155 0.250989 CCAAGTTTTAGTCGGGCCCA 60.251 55.0 24.92 6.15 0.00 5.36 F
911 4563 0.322322 TAATTTCTGTCACGGCCGGT 59.678 50.0 31.76 12.63 0.00 5.28 F
2949 8928 0.321919 GAGGAAGGTGACTGCATGCA 60.322 55.0 21.29 21.29 42.68 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2488 7997 0.530870 GATGGAGGCTGACGGTTAGC 60.531 60.000 15.82 15.82 40.41 3.09 R
2550 8060 1.294780 GAGGCCTAGATGGATGGCG 59.705 63.158 4.42 0.00 46.97 5.69 R
2844 8823 0.761702 TCTATCGTTAGGGGTGGGGC 60.762 60.000 0.80 0.00 0.00 5.80 R
2984 8963 1.134560 CGACTTAGACCTAGCCACACC 59.865 57.143 0.00 0.00 0.00 4.16 R
5092 14658 0.038526 ACAGATCACACGGAACCGAC 60.039 55.000 20.14 4.28 42.83 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.978876 ACCAAACAGCCCCTACATC 57.021 52.632 0.00 0.00 0.00 3.06
19 20 1.372501 ACCAAACAGCCCCTACATCT 58.627 50.000 0.00 0.00 0.00 2.90
20 21 2.557869 ACCAAACAGCCCCTACATCTA 58.442 47.619 0.00 0.00 0.00 1.98
21 22 3.123273 ACCAAACAGCCCCTACATCTAT 58.877 45.455 0.00 0.00 0.00 1.98
22 23 3.117888 ACCAAACAGCCCCTACATCTATG 60.118 47.826 0.00 0.00 0.00 2.23
23 24 3.480470 CAAACAGCCCCTACATCTATGG 58.520 50.000 0.00 0.00 0.00 2.74
24 25 2.795291 ACAGCCCCTACATCTATGGA 57.205 50.000 0.00 0.00 0.00 3.41
25 26 2.330216 ACAGCCCCTACATCTATGGAC 58.670 52.381 0.00 0.00 0.00 4.02
26 27 2.329267 CAGCCCCTACATCTATGGACA 58.671 52.381 0.00 0.00 0.00 4.02
27 28 2.909006 CAGCCCCTACATCTATGGACAT 59.091 50.000 0.00 0.00 0.00 3.06
28 29 4.096681 CAGCCCCTACATCTATGGACATA 58.903 47.826 0.00 0.00 0.00 2.29
29 30 4.532126 CAGCCCCTACATCTATGGACATAA 59.468 45.833 0.00 0.00 0.00 1.90
30 31 5.190528 CAGCCCCTACATCTATGGACATAAT 59.809 44.000 0.00 0.00 0.00 1.28
31 32 6.384015 CAGCCCCTACATCTATGGACATAATA 59.616 42.308 0.00 0.00 0.00 0.98
32 33 6.965866 AGCCCCTACATCTATGGACATAATAA 59.034 38.462 0.00 0.00 0.00 1.40
33 34 7.461043 AGCCCCTACATCTATGGACATAATAAA 59.539 37.037 0.00 0.00 0.00 1.40
34 35 8.275040 GCCCCTACATCTATGGACATAATAAAT 58.725 37.037 0.00 0.00 0.00 1.40
47 48 9.051679 TGGACATAATAAATATACAGTGTGTGC 57.948 33.333 5.88 0.00 0.00 4.57
48 49 9.051679 GGACATAATAAATATACAGTGTGTGCA 57.948 33.333 5.88 0.00 0.00 4.57
82 83 7.903452 TCGTATGTACTCTTTTATAGCAACG 57.097 36.000 0.00 0.00 0.00 4.10
83 84 7.475015 TCGTATGTACTCTTTTATAGCAACGT 58.525 34.615 0.00 0.00 0.00 3.99
84 85 7.970061 TCGTATGTACTCTTTTATAGCAACGTT 59.030 33.333 0.00 0.00 0.00 3.99
85 86 8.589629 CGTATGTACTCTTTTATAGCAACGTTT 58.410 33.333 0.00 0.00 0.00 3.60
105 106 2.981400 AAACGGTTTTAGGTGATGCG 57.019 45.000 0.00 0.00 0.00 4.73
106 107 1.886886 AACGGTTTTAGGTGATGCGT 58.113 45.000 0.00 0.00 0.00 5.24
107 108 1.153353 ACGGTTTTAGGTGATGCGTG 58.847 50.000 0.00 0.00 0.00 5.34
108 109 1.153353 CGGTTTTAGGTGATGCGTGT 58.847 50.000 0.00 0.00 0.00 4.49
109 110 1.136085 CGGTTTTAGGTGATGCGTGTG 60.136 52.381 0.00 0.00 0.00 3.82
110 111 1.401018 GGTTTTAGGTGATGCGTGTGC 60.401 52.381 0.00 0.00 43.20 4.57
130 131 3.179010 CACTCGTGCTGACTTTTGATG 57.821 47.619 0.00 0.00 0.00 3.07
131 132 2.096069 CACTCGTGCTGACTTTTGATGG 60.096 50.000 0.00 0.00 0.00 3.51
132 133 2.146342 CTCGTGCTGACTTTTGATGGT 58.854 47.619 0.00 0.00 0.00 3.55
133 134 1.872952 TCGTGCTGACTTTTGATGGTG 59.127 47.619 0.00 0.00 0.00 4.17
134 135 1.069022 CGTGCTGACTTTTGATGGTGG 60.069 52.381 0.00 0.00 0.00 4.61
135 136 0.961019 TGCTGACTTTTGATGGTGGC 59.039 50.000 0.00 0.00 0.00 5.01
136 137 0.961019 GCTGACTTTTGATGGTGGCA 59.039 50.000 0.00 0.00 0.00 4.92
137 138 1.547372 GCTGACTTTTGATGGTGGCAT 59.453 47.619 0.00 0.00 0.00 4.40
138 139 2.754552 GCTGACTTTTGATGGTGGCATA 59.245 45.455 0.00 0.00 0.00 3.14
139 140 3.382546 GCTGACTTTTGATGGTGGCATAT 59.617 43.478 0.00 0.00 0.00 1.78
140 141 4.580167 GCTGACTTTTGATGGTGGCATATA 59.420 41.667 0.00 0.00 0.00 0.86
141 142 5.242393 GCTGACTTTTGATGGTGGCATATAT 59.758 40.000 0.00 0.00 0.00 0.86
142 143 6.430925 GCTGACTTTTGATGGTGGCATATATA 59.569 38.462 0.00 0.00 0.00 0.86
143 144 7.040478 GCTGACTTTTGATGGTGGCATATATAA 60.040 37.037 0.00 0.00 0.00 0.98
144 145 8.938801 TGACTTTTGATGGTGGCATATATAAT 57.061 30.769 0.00 0.00 0.00 1.28
145 146 9.365906 TGACTTTTGATGGTGGCATATATAATT 57.634 29.630 0.00 0.00 0.00 1.40
146 147 9.846248 GACTTTTGATGGTGGCATATATAATTC 57.154 33.333 0.00 0.00 0.00 2.17
147 148 9.365906 ACTTTTGATGGTGGCATATATAATTCA 57.634 29.630 0.00 0.00 0.00 2.57
148 149 9.850628 CTTTTGATGGTGGCATATATAATTCAG 57.149 33.333 0.00 0.00 0.00 3.02
149 150 7.943079 TTGATGGTGGCATATATAATTCAGG 57.057 36.000 0.00 0.00 0.00 3.86
150 151 5.887598 TGATGGTGGCATATATAATTCAGGC 59.112 40.000 0.00 0.00 0.00 4.85
151 152 4.260985 TGGTGGCATATATAATTCAGGCG 58.739 43.478 0.00 0.00 0.00 5.52
152 153 3.627577 GGTGGCATATATAATTCAGGCGG 59.372 47.826 0.00 0.00 0.00 6.13
153 154 4.513442 GTGGCATATATAATTCAGGCGGA 58.487 43.478 0.00 0.00 0.00 5.54
154 155 5.126067 GTGGCATATATAATTCAGGCGGAT 58.874 41.667 0.00 0.00 0.00 4.18
155 156 5.008019 GTGGCATATATAATTCAGGCGGATG 59.992 44.000 0.00 0.00 0.00 3.51
156 157 5.104569 TGGCATATATAATTCAGGCGGATGA 60.105 40.000 0.00 0.00 0.00 2.92
157 158 6.000219 GGCATATATAATTCAGGCGGATGAT 59.000 40.000 0.00 0.00 0.00 2.45
158 159 7.161404 GGCATATATAATTCAGGCGGATGATA 58.839 38.462 0.00 0.00 0.00 2.15
159 160 7.661437 GGCATATATAATTCAGGCGGATGATAA 59.339 37.037 0.00 0.00 0.00 1.75
160 161 8.499162 GCATATATAATTCAGGCGGATGATAAC 58.501 37.037 0.00 0.00 0.00 1.89
161 162 9.770097 CATATATAATTCAGGCGGATGATAACT 57.230 33.333 0.00 0.00 0.00 2.24
165 166 8.723942 ATAATTCAGGCGGATGATAACTTATC 57.276 34.615 2.22 2.22 35.74 1.75
177 178 6.925610 TGATAACTTATCAAAGCGCTCAAT 57.074 33.333 12.06 7.41 41.89 2.57
178 179 7.320443 TGATAACTTATCAAAGCGCTCAATT 57.680 32.000 12.06 0.00 41.89 2.32
179 180 7.761409 TGATAACTTATCAAAGCGCTCAATTT 58.239 30.769 12.06 0.00 41.89 1.82
180 181 8.888716 TGATAACTTATCAAAGCGCTCAATTTA 58.111 29.630 12.06 5.77 41.89 1.40
181 182 9.159470 GATAACTTATCAAAGCGCTCAATTTAC 57.841 33.333 12.06 0.00 36.05 2.01
201 202 7.951530 TTTACTAGTTACCTTGTTGCACTAC 57.048 36.000 0.00 0.00 0.00 2.73
202 203 5.803237 ACTAGTTACCTTGTTGCACTACT 57.197 39.130 0.00 0.00 0.00 2.57
218 219 5.404366 TGCACTACTTAACGTTGTCAAGATC 59.596 40.000 11.99 0.00 28.96 2.75
258 259 1.745827 GCCGCTAAAGCAGGAATACCA 60.746 52.381 14.33 0.00 42.21 3.25
268 269 0.530650 AGGAATACCATGACAGCGCG 60.531 55.000 0.00 0.00 38.94 6.86
287 288 0.661020 GGCGTCCCCGTTGATAAATG 59.339 55.000 0.00 0.00 36.15 2.32
288 289 1.375551 GCGTCCCCGTTGATAAATGT 58.624 50.000 0.00 0.00 36.15 2.71
289 290 2.553086 GCGTCCCCGTTGATAAATGTA 58.447 47.619 0.00 0.00 36.15 2.29
290 291 3.135994 GCGTCCCCGTTGATAAATGTAT 58.864 45.455 0.00 0.00 36.15 2.29
291 292 4.309099 GCGTCCCCGTTGATAAATGTATA 58.691 43.478 0.00 0.00 36.15 1.47
292 293 4.933400 GCGTCCCCGTTGATAAATGTATAT 59.067 41.667 0.00 0.00 36.15 0.86
293 294 5.063060 GCGTCCCCGTTGATAAATGTATATC 59.937 44.000 0.00 0.00 36.15 1.63
294 295 5.287752 CGTCCCCGTTGATAAATGTATATCG 59.712 44.000 0.00 0.00 35.47 2.92
295 296 6.392354 GTCCCCGTTGATAAATGTATATCGA 58.608 40.000 0.00 0.00 35.47 3.59
296 297 6.309737 GTCCCCGTTGATAAATGTATATCGAC 59.690 42.308 0.00 5.10 40.81 4.20
297 298 6.015265 TCCCCGTTGATAAATGTATATCGACA 60.015 38.462 12.69 0.00 42.87 4.35
298 299 6.647481 CCCCGTTGATAAATGTATATCGACAA 59.353 38.462 12.69 0.00 42.87 3.18
299 300 7.359765 CCCCGTTGATAAATGTATATCGACAAC 60.360 40.741 12.69 0.00 42.87 3.32
300 301 7.384115 CCCGTTGATAAATGTATATCGACAACT 59.616 37.037 12.69 0.00 42.87 3.16
301 302 8.425491 CCGTTGATAAATGTATATCGACAACTC 58.575 37.037 12.69 0.00 42.87 3.01
302 303 9.181805 CGTTGATAAATGTATATCGACAACTCT 57.818 33.333 12.69 0.00 42.87 3.24
345 346 6.059484 TCGACAACTCTACCAAAAAGGAAAT 58.941 36.000 0.00 0.00 41.22 2.17
367 369 1.765314 AGGTCGAATTAGGAGCTGCAT 59.235 47.619 8.35 0.00 40.47 3.96
368 370 2.171448 AGGTCGAATTAGGAGCTGCATT 59.829 45.455 8.35 0.00 40.47 3.56
405 407 8.614469 TGTAGATCAAAACATTGATGTGTGTA 57.386 30.769 8.66 0.00 41.38 2.90
494 4029 9.823647 CACCTAATATAAGATCTCACACAAGTT 57.176 33.333 0.00 0.00 0.00 2.66
512 4047 4.123497 AGTTTTCCCTTTTTGTGCTGAC 57.877 40.909 0.00 0.00 0.00 3.51
531 4066 2.979676 CCTGAGCGCTTTGGCACA 60.980 61.111 13.26 2.02 38.60 4.57
560 4095 2.099831 CGGGACTACGTCGAGTGC 59.900 66.667 0.00 0.00 37.08 4.40
562 4097 2.099831 GGACTACGTCGAGTGCCG 59.900 66.667 0.00 0.00 40.25 5.69
563 4098 2.393768 GGACTACGTCGAGTGCCGA 61.394 63.158 0.00 0.00 46.35 5.54
570 4105 3.062466 TCGAGTGCCGAGTGGAGG 61.062 66.667 0.00 0.00 43.23 4.30
571 4106 4.135153 CGAGTGCCGAGTGGAGGG 62.135 72.222 0.00 0.00 41.76 4.30
572 4107 2.680352 GAGTGCCGAGTGGAGGGA 60.680 66.667 0.00 0.00 37.49 4.20
573 4108 2.681778 AGTGCCGAGTGGAGGGAG 60.682 66.667 0.00 0.00 37.49 4.30
574 4109 4.459089 GTGCCGAGTGGAGGGAGC 62.459 72.222 0.00 0.00 37.49 4.70
577 4112 3.465403 CCGAGTGGAGGGAGCCTG 61.465 72.222 0.00 0.00 37.49 4.85
578 4113 4.154347 CGAGTGGAGGGAGCCTGC 62.154 72.222 0.00 0.00 42.53 4.85
579 4114 3.791586 GAGTGGAGGGAGCCTGCC 61.792 72.222 0.00 0.00 41.46 4.85
583 4118 4.785453 GGAGGGAGCCTGCCGTTG 62.785 72.222 0.00 0.00 35.89 4.10
584 4119 4.785453 GAGGGAGCCTGCCGTTGG 62.785 72.222 0.00 0.00 31.76 3.77
595 4130 2.669569 CCGTTGGGCCACTGACAG 60.670 66.667 5.23 0.00 0.00 3.51
596 4131 2.669569 CGTTGGGCCACTGACAGG 60.670 66.667 5.23 0.00 0.00 4.00
597 4132 2.515901 GTTGGGCCACTGACAGGT 59.484 61.111 5.23 0.00 0.00 4.00
598 4133 1.898574 GTTGGGCCACTGACAGGTG 60.899 63.158 5.23 2.99 37.00 4.00
604 4139 2.515398 CACTGACAGGTGGGCCAA 59.485 61.111 8.40 0.00 37.19 4.52
605 4140 1.601759 CACTGACAGGTGGGCCAAG 60.602 63.158 8.40 2.81 37.19 3.61
606 4141 2.078665 ACTGACAGGTGGGCCAAGT 61.079 57.895 8.40 7.65 37.19 3.16
607 4142 1.151450 CTGACAGGTGGGCCAAGTT 59.849 57.895 8.40 0.00 37.19 2.66
608 4143 0.468029 CTGACAGGTGGGCCAAGTTT 60.468 55.000 8.40 0.00 37.19 2.66
609 4144 0.032615 TGACAGGTGGGCCAAGTTTT 60.033 50.000 8.40 0.00 37.19 2.43
610 4145 1.215673 TGACAGGTGGGCCAAGTTTTA 59.784 47.619 8.40 0.00 37.19 1.52
611 4146 1.886542 GACAGGTGGGCCAAGTTTTAG 59.113 52.381 8.40 0.00 37.19 1.85
612 4147 1.216930 ACAGGTGGGCCAAGTTTTAGT 59.783 47.619 8.40 0.00 37.19 2.24
613 4148 1.886542 CAGGTGGGCCAAGTTTTAGTC 59.113 52.381 8.40 0.00 37.19 2.59
614 4149 0.879090 GGTGGGCCAAGTTTTAGTCG 59.121 55.000 8.40 0.00 34.09 4.18
615 4150 0.879090 GTGGGCCAAGTTTTAGTCGG 59.121 55.000 8.40 0.00 0.00 4.79
616 4151 0.250989 TGGGCCAAGTTTTAGTCGGG 60.251 55.000 2.13 0.00 0.00 5.14
617 4152 1.592400 GGGCCAAGTTTTAGTCGGGC 61.592 60.000 4.39 0.00 41.37 6.13
618 4153 1.880894 GCCAAGTTTTAGTCGGGCC 59.119 57.895 0.00 0.00 35.42 5.80
619 4154 1.592400 GCCAAGTTTTAGTCGGGCCC 61.592 60.000 13.57 13.57 35.42 5.80
620 4155 0.250989 CCAAGTTTTAGTCGGGCCCA 60.251 55.000 24.92 6.15 0.00 5.36
621 4156 0.879090 CAAGTTTTAGTCGGGCCCAC 59.121 55.000 24.92 18.86 0.00 4.61
622 4157 0.604511 AAGTTTTAGTCGGGCCCACG 60.605 55.000 24.92 9.15 0.00 4.94
623 4158 1.004679 GTTTTAGTCGGGCCCACGA 60.005 57.895 24.92 11.86 41.13 4.35
624 4159 1.017701 GTTTTAGTCGGGCCCACGAG 61.018 60.000 24.92 5.09 44.42 4.18
626 4161 1.880819 TTTAGTCGGGCCCACGAGTC 61.881 60.000 24.92 2.74 44.64 3.36
627 4162 3.572447 TAGTCGGGCCCACGAGTCA 62.572 63.158 24.92 3.80 44.64 3.41
628 4163 4.436998 GTCGGGCCCACGAGTCAG 62.437 72.222 24.92 1.98 44.42 3.51
629 4164 4.988716 TCGGGCCCACGAGTCAGT 62.989 66.667 24.92 0.00 38.06 3.41
630 4165 4.742201 CGGGCCCACGAGTCAGTG 62.742 72.222 24.92 0.00 41.53 3.66
631 4166 3.311110 GGGCCCACGAGTCAGTGA 61.311 66.667 19.95 0.00 44.43 3.41
632 4167 2.048127 GGCCCACGAGTCAGTGAC 60.048 66.667 15.78 15.78 44.43 3.67
633 4168 2.430921 GCCCACGAGTCAGTGACG 60.431 66.667 17.40 9.50 44.43 4.35
634 4169 2.258591 CCCACGAGTCAGTGACGG 59.741 66.667 17.40 15.31 44.43 4.79
635 4170 2.265904 CCCACGAGTCAGTGACGGA 61.266 63.158 17.40 0.00 44.43 4.69
636 4171 1.658114 CCACGAGTCAGTGACGGAA 59.342 57.895 17.40 0.00 44.43 4.30
637 4172 0.663568 CCACGAGTCAGTGACGGAAC 60.664 60.000 17.40 9.55 44.43 3.62
638 4173 0.997226 CACGAGTCAGTGACGGAACG 60.997 60.000 17.40 20.65 45.85 3.95
664 4199 4.864334 CCGCACAGCAGGGGATCC 62.864 72.222 1.92 1.92 43.81 3.36
665 4200 3.790437 CGCACAGCAGGGGATCCT 61.790 66.667 12.58 0.00 46.26 3.24
666 4201 2.191641 GCACAGCAGGGGATCCTC 59.808 66.667 12.58 7.90 42.67 3.71
667 4202 2.503061 CACAGCAGGGGATCCTCG 59.497 66.667 12.58 5.37 42.67 4.63
668 4203 2.039624 ACAGCAGGGGATCCTCGT 59.960 61.111 12.58 0.00 42.67 4.18
669 4204 2.060980 ACAGCAGGGGATCCTCGTC 61.061 63.158 12.58 4.80 42.67 4.20
670 4205 2.444895 AGCAGGGGATCCTCGTCC 60.445 66.667 12.58 3.97 42.67 4.79
671 4206 3.917760 GCAGGGGATCCTCGTCCG 61.918 72.222 12.58 0.08 42.67 4.79
672 4207 2.442272 CAGGGGATCCTCGTCCGT 60.442 66.667 12.58 0.00 42.67 4.69
673 4208 2.442272 AGGGGATCCTCGTCCGTG 60.442 66.667 12.58 0.00 39.80 4.94
764 4302 3.720494 TATGGCGTGGGCAGAGAA 58.280 55.556 0.00 0.00 42.43 2.87
832 4370 4.642466 ATGAGTCTGATCATGCATCCAT 57.358 40.909 0.00 0.00 38.49 3.41
907 4559 2.930682 GGACTCTAATTTCTGTCACGGC 59.069 50.000 0.00 0.00 0.00 5.68
908 4560 2.930682 GACTCTAATTTCTGTCACGGCC 59.069 50.000 0.00 0.00 0.00 6.13
909 4561 1.927174 CTCTAATTTCTGTCACGGCCG 59.073 52.381 26.86 26.86 0.00 6.13
910 4562 1.006832 CTAATTTCTGTCACGGCCGG 58.993 55.000 31.76 18.67 0.00 6.13
911 4563 0.322322 TAATTTCTGTCACGGCCGGT 59.678 50.000 31.76 12.63 0.00 5.28
962 4656 7.145323 GTCTTACTTCCTTTATGCAAAGCAAA 58.855 34.615 0.00 0.00 43.62 3.68
1058 4755 2.784347 TCACAAGTTCACCACACACAA 58.216 42.857 0.00 0.00 0.00 3.33
1512 5212 2.044946 GGCACCGGCAAGAATCCT 60.045 61.111 0.00 0.00 43.71 3.24
1805 5515 1.812922 GGTGATGCACTCGCTGGAG 60.813 63.158 0.00 0.00 46.13 3.86
1858 5568 2.093021 AGCTGATGAGAGGAAAGAAGGC 60.093 50.000 0.00 0.00 0.00 4.35
1966 5680 6.442952 CCATAGTTAGCTAGCTTCTACTGTG 58.557 44.000 24.88 25.92 0.00 3.66
1981 5703 2.863809 ACTGTGTGTCCAAATTCTCCC 58.136 47.619 0.00 0.00 0.00 4.30
2179 6020 4.993029 AAATCACGTTTGACCAAGGAAA 57.007 36.364 0.00 0.00 33.38 3.13
2272 6529 4.646945 TGAGGGTTGAAAATGCACTTTACA 59.353 37.500 0.00 0.00 0.00 2.41
2379 7882 7.671398 ACCTGAAAATAAAAGTCCATCAGTCAT 59.329 33.333 0.00 0.00 32.86 3.06
2412 7915 2.614057 GCCGTTAGGTCTTCATCCAATG 59.386 50.000 0.00 0.00 40.50 2.82
2461 7970 4.862371 TCTTCTACCTCCCTCTCTTCTTC 58.138 47.826 0.00 0.00 0.00 2.87
2462 7971 3.673543 TCTACCTCCCTCTCTTCTTCC 57.326 52.381 0.00 0.00 0.00 3.46
2463 7972 3.203059 TCTACCTCCCTCTCTTCTTCCT 58.797 50.000 0.00 0.00 0.00 3.36
2464 7973 2.543037 ACCTCCCTCTCTTCTTCCTC 57.457 55.000 0.00 0.00 0.00 3.71
2465 7974 1.341581 ACCTCCCTCTCTTCTTCCTCG 60.342 57.143 0.00 0.00 0.00 4.63
2474 7983 1.006571 TTCTTCCTCGTGACACCGC 60.007 57.895 0.00 0.00 0.00 5.68
2550 8060 4.410400 CACAACCTCTCCGCCCCC 62.410 72.222 0.00 0.00 0.00 5.40
2593 8149 1.990160 AACAGAGAACAACCCCGGCA 61.990 55.000 0.00 0.00 0.00 5.69
2594 8150 1.228124 CAGAGAACAACCCCGGCAA 60.228 57.895 0.00 0.00 0.00 4.52
2883 8862 2.409064 TAGTGGGGTTGTCTTCTCCA 57.591 50.000 0.00 0.00 0.00 3.86
2905 8884 2.232298 GACTTCTCTGGCCAGGTCCG 62.232 65.000 32.23 19.75 0.00 4.79
2921 8900 2.143925 GTCCGGTGTGAAGGAAGAAAG 58.856 52.381 0.00 0.00 38.41 2.62
2949 8928 0.321919 GAGGAAGGTGACTGCATGCA 60.322 55.000 21.29 21.29 42.68 3.96
2981 8960 8.752005 AATTTCAGGTAGCTGATAAATAGCAA 57.248 30.769 24.35 13.55 43.53 3.91
2983 8962 7.792374 TTCAGGTAGCTGATAAATAGCAAAG 57.208 36.000 24.35 0.00 43.53 2.77
2984 8963 6.291377 TCAGGTAGCTGATAAATAGCAAAGG 58.709 40.000 20.43 0.00 43.53 3.11
2985 8964 5.471456 CAGGTAGCTGATAAATAGCAAAGGG 59.529 44.000 17.08 0.00 43.53 3.95
2986 8965 5.132816 AGGTAGCTGATAAATAGCAAAGGGT 59.867 40.000 0.00 0.00 43.53 4.34
2987 8966 5.239525 GGTAGCTGATAAATAGCAAAGGGTG 59.760 44.000 0.00 0.00 43.53 4.61
2988 8967 4.860022 AGCTGATAAATAGCAAAGGGTGT 58.140 39.130 0.00 0.00 43.53 4.16
2989 8968 4.641989 AGCTGATAAATAGCAAAGGGTGTG 59.358 41.667 0.00 0.00 43.53 3.82
2990 8969 4.202050 GCTGATAAATAGCAAAGGGTGTGG 60.202 45.833 0.00 0.00 40.81 4.17
2999 8978 1.906574 CAAAGGGTGTGGCTAGGTCTA 59.093 52.381 0.00 0.00 0.00 2.59
3045 9024 6.999272 AGTCTCGGTCAAGTGATATAGTATGT 59.001 38.462 0.00 0.00 0.00 2.29
3104 9084 5.409214 ACGAATTTCCATGCAAAATCAAAGG 59.591 36.000 0.00 0.00 0.00 3.11
3112 9092 5.751990 CCATGCAAAATCAAAGGAAGATAGC 59.248 40.000 0.00 0.00 0.00 2.97
3116 9096 6.153170 TGCAAAATCAAAGGAAGATAGCATCA 59.847 34.615 0.00 0.00 0.00 3.07
3130 9110 7.117285 AGATAGCATCAACTGAGACATAACA 57.883 36.000 0.00 0.00 0.00 2.41
3133 9113 6.882610 AGCATCAACTGAGACATAACAAAA 57.117 33.333 0.00 0.00 0.00 2.44
3134 9114 6.906659 AGCATCAACTGAGACATAACAAAAG 58.093 36.000 0.00 0.00 0.00 2.27
3136 9116 6.798959 GCATCAACTGAGACATAACAAAAGTC 59.201 38.462 0.00 0.00 0.00 3.01
3147 9127 7.770897 AGACATAACAAAAGTCTCAGTCAACTT 59.229 33.333 0.00 0.00 38.13 2.66
3307 9288 1.289066 CTCGACACGCTTCTCCCAA 59.711 57.895 0.00 0.00 0.00 4.12
3402 9383 3.183754 TGTGTACGTCATAATTCGCAGG 58.816 45.455 0.00 0.00 0.00 4.85
3436 9580 5.720371 TTACTTATTGCACAAACCATGCT 57.280 34.783 0.00 0.00 43.77 3.79
3460 9604 3.365832 CACAACTTTGTCATGACAGCAC 58.634 45.455 26.48 1.39 42.94 4.40
3865 10013 5.755375 GCTCTACCAGTACGTGTATAGTACA 59.245 44.000 0.00 0.00 44.92 2.90
3867 10015 7.518052 GCTCTACCAGTACGTGTATAGTACAAG 60.518 44.444 0.00 2.28 44.92 3.16
3880 10383 8.008844 GTGTATAGTACAAGTATGTCGTCTAGC 58.991 40.741 0.00 0.00 40.93 3.42
3895 10398 3.729762 CGTCTAGCTACACGTGCATGTAA 60.730 47.826 17.22 2.07 34.68 2.41
3902 10405 0.516877 CACGTGCATGTAACCAGTGG 59.483 55.000 12.10 7.91 0.00 4.00
3903 10406 1.234615 ACGTGCATGTAACCAGTGGC 61.235 55.000 10.57 0.00 0.00 5.01
3904 10407 1.883021 GTGCATGTAACCAGTGGCC 59.117 57.895 9.78 0.00 0.00 5.36
3905 10408 0.893270 GTGCATGTAACCAGTGGCCA 60.893 55.000 9.78 0.00 0.00 5.36
3906 10409 0.893270 TGCATGTAACCAGTGGCCAC 60.893 55.000 29.22 29.22 0.00 5.01
3907 10410 0.609131 GCATGTAACCAGTGGCCACT 60.609 55.000 33.20 33.20 43.61 4.00
4169 10673 0.802222 CACCTACAGCATCCACGACG 60.802 60.000 0.00 0.00 0.00 5.12
4270 10774 2.226962 AGCGGGACTACTAGGAACAA 57.773 50.000 0.00 0.00 0.00 2.83
4324 10887 3.403276 GGTCGACCGCATCTATAGC 57.597 57.895 20.85 0.00 0.00 2.97
4325 10888 0.882474 GGTCGACCGCATCTATAGCT 59.118 55.000 20.85 0.00 0.00 3.32
4570 14058 1.148273 TGCTCTTGGTGCCGTTCTT 59.852 52.632 0.00 0.00 0.00 2.52
4571 14059 0.884704 TGCTCTTGGTGCCGTTCTTC 60.885 55.000 0.00 0.00 0.00 2.87
4572 14060 0.603975 GCTCTTGGTGCCGTTCTTCT 60.604 55.000 0.00 0.00 0.00 2.85
4574 14065 2.222027 CTCTTGGTGCCGTTCTTCTTT 58.778 47.619 0.00 0.00 0.00 2.52
4577 14068 4.200874 TCTTGGTGCCGTTCTTCTTTTTA 58.799 39.130 0.00 0.00 0.00 1.52
4587 14078 2.223745 TCTTCTTTTTAAAGGCGCCGT 58.776 42.857 23.20 16.90 36.67 5.68
4621 14112 0.393132 TGGTTGGTGAGCGTTGTTGA 60.393 50.000 0.00 0.00 0.00 3.18
4665 14156 1.211703 TGTGTCCTCTTTGTCCAAGCA 59.788 47.619 0.00 0.00 31.70 3.91
4691 14183 2.921853 TATCCCTCTTCTGCGGCCGA 62.922 60.000 33.48 13.59 0.00 5.54
4811 14305 6.627087 TCTAGGTGAAACATCTCCATCTTT 57.373 37.500 0.00 0.00 39.98 2.52
4816 14310 4.690748 GTGAAACATCTCCATCTTTCGACA 59.309 41.667 0.00 0.00 36.32 4.35
4862 14356 2.050269 CCACGAGGAGGTTGTGTCT 58.950 57.895 0.00 0.00 38.77 3.41
4872 14428 1.593209 GTTGTGTCTTCCGTGCCGA 60.593 57.895 0.00 0.00 0.00 5.54
4874 14430 2.023414 TTGTGTCTTCCGTGCCGAGT 62.023 55.000 0.00 0.00 0.00 4.18
4876 14432 0.878961 GTGTCTTCCGTGCCGAGTTT 60.879 55.000 0.00 0.00 0.00 2.66
4915 14471 0.734889 CATTCCCTGTTGATGTCGGC 59.265 55.000 0.00 0.00 0.00 5.54
4968 14525 0.472471 TTCCCTGGTGCTTCGTTCTT 59.528 50.000 0.00 0.00 0.00 2.52
4976 14533 1.000955 GTGCTTCGTTCTTGGAGGAGA 59.999 52.381 0.00 0.00 0.00 3.71
5037 14596 5.010314 TCCTTCTAGTTTGTAGCGTTTGAGA 59.990 40.000 0.00 0.00 0.00 3.27
5038 14597 5.869888 CCTTCTAGTTTGTAGCGTTTGAGAT 59.130 40.000 0.00 0.00 0.00 2.75
5050 14609 8.357402 TGTAGCGTTTGAGATTATATTAGCTGA 58.643 33.333 0.00 0.00 33.09 4.26
5076 14642 8.771920 TTTCTAATGCATATGTATCTTACCGG 57.228 34.615 6.77 0.00 0.00 5.28
5092 14658 2.429478 ACCGGGTTGTATTTCCTTTCG 58.571 47.619 6.32 0.00 0.00 3.46
5168 14745 1.346068 GAGCTAGGCTCGATTCCCATT 59.654 52.381 3.74 0.00 45.85 3.16
5185 14763 0.323999 ATTTCAGGCTGGCTGATGCA 60.324 50.000 30.88 19.45 41.91 3.96
5242 14820 1.604604 ATTGTACCGTGCTGCAAGTT 58.395 45.000 14.22 2.73 35.30 2.66
5245 14823 0.661020 GTACCGTGCTGCAAGTTGTT 59.339 50.000 14.22 0.00 35.30 2.83
5254 14832 5.909054 CGTGCTGCAAGTTGTTATATTATGG 59.091 40.000 2.77 0.00 35.30 2.74
5259 14837 7.435192 GCTGCAAGTTGTTATATTATGGGAAAC 59.565 37.037 4.48 0.00 35.30 2.78
5260 14838 8.354711 TGCAAGTTGTTATATTATGGGAAACA 57.645 30.769 4.48 0.00 0.00 2.83
5261 14839 8.976353 TGCAAGTTGTTATATTATGGGAAACAT 58.024 29.630 4.48 0.00 43.68 2.71
5305 14883 4.516365 AGCTACTAGCAAGTTGTTACGT 57.484 40.909 10.73 0.00 45.56 3.57
5306 14884 4.879598 AGCTACTAGCAAGTTGTTACGTT 58.120 39.130 10.73 0.00 45.56 3.99
5307 14885 4.684703 AGCTACTAGCAAGTTGTTACGTTG 59.315 41.667 10.73 5.80 45.56 4.10
5317 14895 1.218875 TGTTACGTTGCGAGGTGCTG 61.219 55.000 9.59 0.00 46.63 4.41
5318 14896 1.666553 TTACGTTGCGAGGTGCTGG 60.667 57.895 9.59 0.00 46.63 4.85
5322 14900 4.269523 TTGCGAGGTGCTGGCCTT 62.270 61.111 3.32 0.00 46.63 4.35
5323 14901 4.704833 TGCGAGGTGCTGGCCTTC 62.705 66.667 3.32 0.00 46.63 3.46
5324 14902 4.400961 GCGAGGTGCTGGCCTTCT 62.401 66.667 3.32 0.00 39.34 2.85
5325 14903 2.435586 CGAGGTGCTGGCCTTCTG 60.436 66.667 3.32 0.00 39.34 3.02
5326 14904 2.749441 GAGGTGCTGGCCTTCTGC 60.749 66.667 3.32 3.86 39.34 4.26
5327 14905 4.711949 AGGTGCTGGCCTTCTGCG 62.712 66.667 3.32 0.00 42.34 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.372501 AGATGTAGGGGCTGTTTGGT 58.627 50.000 0.00 0.00 0.00 3.67
2 3 3.136443 TCCATAGATGTAGGGGCTGTTTG 59.864 47.826 0.18 0.00 30.44 2.93
3 4 3.136626 GTCCATAGATGTAGGGGCTGTTT 59.863 47.826 0.00 0.00 31.64 2.83
4 5 2.706190 GTCCATAGATGTAGGGGCTGTT 59.294 50.000 0.00 0.00 31.64 3.16
5 6 2.330216 GTCCATAGATGTAGGGGCTGT 58.670 52.381 0.00 0.00 31.64 4.40
6 7 2.329267 TGTCCATAGATGTAGGGGCTG 58.671 52.381 6.73 0.00 35.62 4.85
7 8 2.795291 TGTCCATAGATGTAGGGGCT 57.205 50.000 6.73 0.00 35.62 5.19
8 9 5.700402 ATTATGTCCATAGATGTAGGGGC 57.300 43.478 0.00 0.00 35.13 5.80
21 22 9.051679 GCACACACTGTATATTTATTATGTCCA 57.948 33.333 0.00 0.00 0.00 4.02
22 23 9.051679 TGCACACACTGTATATTTATTATGTCC 57.948 33.333 0.00 0.00 0.00 4.02
56 57 8.965172 CGTTGCTATAAAAGAGTACATACGATT 58.035 33.333 0.00 0.00 0.00 3.34
57 58 8.133627 ACGTTGCTATAAAAGAGTACATACGAT 58.866 33.333 0.00 0.00 0.00 3.73
58 59 7.475015 ACGTTGCTATAAAAGAGTACATACGA 58.525 34.615 0.00 0.00 0.00 3.43
59 60 7.675270 ACGTTGCTATAAAAGAGTACATACG 57.325 36.000 0.00 0.00 0.00 3.06
64 65 9.243011 CGTTTAAACGTTGCTATAAAAGAGTAC 57.757 33.333 28.24 0.00 46.63 2.73
82 83 4.613866 CGCATCACCTAAAACCGTTTAAAC 59.386 41.667 8.35 8.35 0.00 2.01
83 84 4.275443 ACGCATCACCTAAAACCGTTTAAA 59.725 37.500 0.00 0.00 0.00 1.52
84 85 3.814283 ACGCATCACCTAAAACCGTTTAA 59.186 39.130 0.00 0.00 0.00 1.52
85 86 3.186817 CACGCATCACCTAAAACCGTTTA 59.813 43.478 0.00 0.00 0.00 2.01
86 87 2.031508 CACGCATCACCTAAAACCGTTT 60.032 45.455 0.00 0.00 0.00 3.60
87 88 1.533731 CACGCATCACCTAAAACCGTT 59.466 47.619 0.00 0.00 0.00 4.44
88 89 1.153353 CACGCATCACCTAAAACCGT 58.847 50.000 0.00 0.00 0.00 4.83
89 90 1.136085 CACACGCATCACCTAAAACCG 60.136 52.381 0.00 0.00 0.00 4.44
90 91 1.401018 GCACACGCATCACCTAAAACC 60.401 52.381 0.00 0.00 38.36 3.27
91 92 1.265635 TGCACACGCATCACCTAAAAC 59.734 47.619 0.00 0.00 45.36 2.43
92 93 1.598882 TGCACACGCATCACCTAAAA 58.401 45.000 0.00 0.00 45.36 1.52
93 94 3.314083 TGCACACGCATCACCTAAA 57.686 47.368 0.00 0.00 45.36 1.85
110 111 2.096069 CCATCAAAAGTCAGCACGAGTG 60.096 50.000 0.00 0.00 0.00 3.51
111 112 2.146342 CCATCAAAAGTCAGCACGAGT 58.854 47.619 0.00 0.00 0.00 4.18
112 113 2.096069 CACCATCAAAAGTCAGCACGAG 60.096 50.000 0.00 0.00 0.00 4.18
113 114 1.872952 CACCATCAAAAGTCAGCACGA 59.127 47.619 0.00 0.00 0.00 4.35
114 115 1.069022 CCACCATCAAAAGTCAGCACG 60.069 52.381 0.00 0.00 0.00 5.34
115 116 1.336240 GCCACCATCAAAAGTCAGCAC 60.336 52.381 0.00 0.00 0.00 4.40
116 117 0.961019 GCCACCATCAAAAGTCAGCA 59.039 50.000 0.00 0.00 0.00 4.41
117 118 0.961019 TGCCACCATCAAAAGTCAGC 59.039 50.000 0.00 0.00 0.00 4.26
118 119 6.889301 ATATATGCCACCATCAAAAGTCAG 57.111 37.500 0.00 0.00 32.85 3.51
119 120 8.938801 ATTATATATGCCACCATCAAAAGTCA 57.061 30.769 0.00 0.00 32.85 3.41
120 121 9.846248 GAATTATATATGCCACCATCAAAAGTC 57.154 33.333 0.00 0.00 32.85 3.01
121 122 9.365906 TGAATTATATATGCCACCATCAAAAGT 57.634 29.630 0.00 0.00 32.85 2.66
122 123 9.850628 CTGAATTATATATGCCACCATCAAAAG 57.149 33.333 0.00 0.00 32.85 2.27
123 124 8.805175 CCTGAATTATATATGCCACCATCAAAA 58.195 33.333 0.00 0.00 32.85 2.44
124 125 7.093814 GCCTGAATTATATATGCCACCATCAAA 60.094 37.037 0.00 0.00 32.85 2.69
125 126 6.377996 GCCTGAATTATATATGCCACCATCAA 59.622 38.462 0.00 0.00 32.85 2.57
126 127 5.887598 GCCTGAATTATATATGCCACCATCA 59.112 40.000 0.00 0.00 32.85 3.07
127 128 5.008019 CGCCTGAATTATATATGCCACCATC 59.992 44.000 0.00 0.00 32.85 3.51
128 129 4.883585 CGCCTGAATTATATATGCCACCAT 59.116 41.667 0.00 0.00 35.44 3.55
129 130 4.260985 CGCCTGAATTATATATGCCACCA 58.739 43.478 0.00 0.00 0.00 4.17
130 131 3.627577 CCGCCTGAATTATATATGCCACC 59.372 47.826 0.00 0.00 0.00 4.61
131 132 4.513442 TCCGCCTGAATTATATATGCCAC 58.487 43.478 0.00 0.00 0.00 5.01
132 133 4.835284 TCCGCCTGAATTATATATGCCA 57.165 40.909 0.00 0.00 0.00 4.92
133 134 5.368145 TCATCCGCCTGAATTATATATGCC 58.632 41.667 0.00 0.00 0.00 4.40
134 135 8.499162 GTTATCATCCGCCTGAATTATATATGC 58.501 37.037 0.00 0.00 0.00 3.14
135 136 9.770097 AGTTATCATCCGCCTGAATTATATATG 57.230 33.333 0.00 0.00 0.00 1.78
139 140 9.817809 GATAAGTTATCATCCGCCTGAATTATA 57.182 33.333 16.50 0.00 35.28 0.98
140 141 8.321353 TGATAAGTTATCATCCGCCTGAATTAT 58.679 33.333 19.51 0.00 40.09 1.28
141 142 7.676004 TGATAAGTTATCATCCGCCTGAATTA 58.324 34.615 19.51 0.00 40.09 1.40
142 143 6.533730 TGATAAGTTATCATCCGCCTGAATT 58.466 36.000 19.51 0.00 40.09 2.17
143 144 6.114187 TGATAAGTTATCATCCGCCTGAAT 57.886 37.500 19.51 0.00 40.09 2.57
144 145 5.545063 TGATAAGTTATCATCCGCCTGAA 57.455 39.130 19.51 0.00 40.09 3.02
145 146 5.545063 TTGATAAGTTATCATCCGCCTGA 57.455 39.130 23.01 6.07 44.06 3.86
146 147 5.334414 GCTTTGATAAGTTATCATCCGCCTG 60.334 44.000 23.01 11.09 44.06 4.85
147 148 4.757149 GCTTTGATAAGTTATCATCCGCCT 59.243 41.667 23.01 0.00 44.06 5.52
148 149 4.377431 CGCTTTGATAAGTTATCATCCGCC 60.377 45.833 23.01 11.10 44.06 6.13
149 150 4.702392 CGCTTTGATAAGTTATCATCCGC 58.298 43.478 23.01 21.51 44.06 5.54
150 151 4.449068 AGCGCTTTGATAAGTTATCATCCG 59.551 41.667 23.01 22.78 44.06 4.18
151 152 5.466728 TGAGCGCTTTGATAAGTTATCATCC 59.533 40.000 23.01 14.16 44.06 3.51
152 153 6.530913 TGAGCGCTTTGATAAGTTATCATC 57.469 37.500 23.01 16.99 44.06 2.92
153 154 6.925610 TTGAGCGCTTTGATAAGTTATCAT 57.074 33.333 23.01 9.71 44.06 2.45
154 155 6.925610 ATTGAGCGCTTTGATAAGTTATCA 57.074 33.333 19.51 19.51 43.06 2.15
155 156 9.159470 GTAAATTGAGCGCTTTGATAAGTTATC 57.841 33.333 13.26 14.86 33.74 1.75
156 157 8.893727 AGTAAATTGAGCGCTTTGATAAGTTAT 58.106 29.630 13.26 0.00 33.74 1.89
157 158 8.263940 AGTAAATTGAGCGCTTTGATAAGTTA 57.736 30.769 13.26 9.33 33.74 2.24
158 159 7.145932 AGTAAATTGAGCGCTTTGATAAGTT 57.854 32.000 13.26 10.28 33.74 2.66
159 160 6.743575 AGTAAATTGAGCGCTTTGATAAGT 57.256 33.333 13.26 0.00 33.74 2.24
160 161 7.910304 ACTAGTAAATTGAGCGCTTTGATAAG 58.090 34.615 13.26 4.23 34.36 1.73
161 162 7.843490 ACTAGTAAATTGAGCGCTTTGATAA 57.157 32.000 13.26 2.79 0.00 1.75
162 163 7.843490 AACTAGTAAATTGAGCGCTTTGATA 57.157 32.000 13.26 0.00 0.00 2.15
163 164 6.743575 AACTAGTAAATTGAGCGCTTTGAT 57.256 33.333 13.26 3.00 0.00 2.57
164 165 6.091713 GGTAACTAGTAAATTGAGCGCTTTGA 59.908 38.462 13.26 0.10 0.00 2.69
165 166 6.248631 GGTAACTAGTAAATTGAGCGCTTTG 58.751 40.000 13.26 0.00 0.00 2.77
166 167 6.418585 GGTAACTAGTAAATTGAGCGCTTT 57.581 37.500 13.26 3.91 0.00 3.51
218 219 1.542915 CTTGGTGCCATGGTCTTCAAG 59.457 52.381 14.67 16.74 0.00 3.02
243 244 4.199310 GCTGTCATGGTATTCCTGCTTTA 58.801 43.478 0.00 0.00 34.23 1.85
304 305 7.577979 AGTTGTCGATATACTTTTCGCAAAAA 58.422 30.769 0.00 0.00 35.14 1.94
305 306 7.117236 AGAGTTGTCGATATACTTTTCGCAAAA 59.883 33.333 0.00 0.00 35.14 2.44
306 307 6.588756 AGAGTTGTCGATATACTTTTCGCAAA 59.411 34.615 0.00 0.00 35.14 3.68
307 308 6.097356 AGAGTTGTCGATATACTTTTCGCAA 58.903 36.000 0.00 0.00 35.39 4.85
308 309 5.647589 AGAGTTGTCGATATACTTTTCGCA 58.352 37.500 0.00 0.00 35.39 5.10
309 310 6.142002 GGTAGAGTTGTCGATATACTTTTCGC 59.858 42.308 0.00 0.00 35.39 4.70
310 311 7.191551 TGGTAGAGTTGTCGATATACTTTTCG 58.808 38.462 0.00 0.00 36.72 3.46
311 312 8.922058 TTGGTAGAGTTGTCGATATACTTTTC 57.078 34.615 0.00 0.00 0.00 2.29
312 313 9.715121 TTTTGGTAGAGTTGTCGATATACTTTT 57.285 29.630 0.00 0.00 0.00 2.27
313 314 9.715121 TTTTTGGTAGAGTTGTCGATATACTTT 57.285 29.630 0.00 0.00 0.00 2.66
314 315 9.367444 CTTTTTGGTAGAGTTGTCGATATACTT 57.633 33.333 0.00 0.00 0.00 2.24
315 316 7.980099 CCTTTTTGGTAGAGTTGTCGATATACT 59.020 37.037 0.00 0.00 0.00 2.12
345 346 2.764010 TGCAGCTCCTAATTCGACCTAA 59.236 45.455 0.00 0.00 0.00 2.69
463 3998 9.853555 GTGTGAGATCTTATATTAGGTGAGATG 57.146 37.037 0.00 0.00 0.00 2.90
494 4029 2.693074 GGAGTCAGCACAAAAAGGGAAA 59.307 45.455 0.00 0.00 0.00 3.13
512 4047 2.359107 TGCCAAAGCGCTCAGGAG 60.359 61.111 26.80 9.84 44.31 3.69
560 4095 3.465403 CAGGCTCCCTCCACTCGG 61.465 72.222 0.00 0.00 0.00 4.63
561 4096 4.154347 GCAGGCTCCCTCCACTCG 62.154 72.222 0.00 0.00 0.00 4.18
562 4097 3.791586 GGCAGGCTCCCTCCACTC 61.792 72.222 0.00 0.00 0.00 3.51
566 4101 4.785453 CAACGGCAGGCTCCCTCC 62.785 72.222 0.00 0.00 0.00 4.30
567 4102 4.785453 CCAACGGCAGGCTCCCTC 62.785 72.222 0.00 0.00 0.00 4.30
578 4113 2.669569 CTGTCAGTGGCCCAACGG 60.670 66.667 0.00 0.00 0.00 4.44
579 4114 2.669569 CCTGTCAGTGGCCCAACG 60.670 66.667 0.00 0.00 0.00 4.10
580 4115 1.898574 CACCTGTCAGTGGCCCAAC 60.899 63.158 0.00 0.00 33.95 3.77
581 4116 2.515398 CACCTGTCAGTGGCCCAA 59.485 61.111 0.00 0.00 33.95 4.12
587 4122 1.601759 CTTGGCCCACCTGTCAGTG 60.602 63.158 0.00 0.00 36.63 3.66
588 4123 1.645402 AACTTGGCCCACCTGTCAGT 61.645 55.000 0.00 0.00 36.63 3.41
589 4124 0.468029 AAACTTGGCCCACCTGTCAG 60.468 55.000 0.00 0.00 36.63 3.51
590 4125 0.032615 AAAACTTGGCCCACCTGTCA 60.033 50.000 0.00 0.00 36.63 3.58
591 4126 1.886542 CTAAAACTTGGCCCACCTGTC 59.113 52.381 0.00 0.00 36.63 3.51
592 4127 1.216930 ACTAAAACTTGGCCCACCTGT 59.783 47.619 0.00 0.00 36.63 4.00
593 4128 1.886542 GACTAAAACTTGGCCCACCTG 59.113 52.381 0.00 0.00 36.63 4.00
594 4129 1.544759 CGACTAAAACTTGGCCCACCT 60.545 52.381 0.00 0.00 36.63 4.00
595 4130 0.879090 CGACTAAAACTTGGCCCACC 59.121 55.000 0.00 0.00 0.00 4.61
596 4131 0.879090 CCGACTAAAACTTGGCCCAC 59.121 55.000 0.00 0.00 0.00 4.61
597 4132 0.250989 CCCGACTAAAACTTGGCCCA 60.251 55.000 0.00 0.00 0.00 5.36
598 4133 1.592400 GCCCGACTAAAACTTGGCCC 61.592 60.000 0.00 0.00 32.74 5.80
599 4134 1.880894 GCCCGACTAAAACTTGGCC 59.119 57.895 0.00 0.00 32.74 5.36
600 4135 1.592400 GGGCCCGACTAAAACTTGGC 61.592 60.000 5.69 0.00 38.16 4.52
601 4136 0.250989 TGGGCCCGACTAAAACTTGG 60.251 55.000 19.37 0.00 0.00 3.61
602 4137 0.879090 GTGGGCCCGACTAAAACTTG 59.121 55.000 19.37 0.00 0.00 3.16
603 4138 0.604511 CGTGGGCCCGACTAAAACTT 60.605 55.000 19.37 0.00 0.00 2.66
604 4139 1.004200 CGTGGGCCCGACTAAAACT 60.004 57.895 19.37 0.00 0.00 2.66
605 4140 1.004679 TCGTGGGCCCGACTAAAAC 60.005 57.895 19.37 6.70 30.63 2.43
606 4141 1.294138 CTCGTGGGCCCGACTAAAA 59.706 57.895 19.37 0.00 32.57 1.52
607 4142 1.880819 GACTCGTGGGCCCGACTAAA 61.881 60.000 19.37 0.00 32.57 1.85
608 4143 2.283388 ACTCGTGGGCCCGACTAA 60.283 61.111 19.37 0.00 32.57 2.24
609 4144 2.753043 GACTCGTGGGCCCGACTA 60.753 66.667 19.37 7.81 32.57 2.59
610 4145 4.988716 TGACTCGTGGGCCCGACT 62.989 66.667 19.37 0.00 32.57 4.18
611 4146 4.436998 CTGACTCGTGGGCCCGAC 62.437 72.222 19.37 15.47 32.57 4.79
612 4147 4.988716 ACTGACTCGTGGGCCCGA 62.989 66.667 19.37 10.91 35.22 5.14
613 4148 4.742201 CACTGACTCGTGGGCCCG 62.742 72.222 19.37 6.11 0.00 6.13
614 4149 3.311110 TCACTGACTCGTGGGCCC 61.311 66.667 17.59 17.59 35.63 5.80
615 4150 2.048127 GTCACTGACTCGTGGGCC 60.048 66.667 0.00 0.00 35.63 5.80
616 4151 2.430921 CGTCACTGACTCGTGGGC 60.431 66.667 7.58 0.00 35.63 5.36
617 4152 1.802337 TTCCGTCACTGACTCGTGGG 61.802 60.000 7.58 1.20 35.63 4.61
618 4153 0.663568 GTTCCGTCACTGACTCGTGG 60.664 60.000 7.58 1.55 35.63 4.94
619 4154 0.997226 CGTTCCGTCACTGACTCGTG 60.997 60.000 7.58 0.00 36.25 4.35
620 4155 1.281960 CGTTCCGTCACTGACTCGT 59.718 57.895 7.58 0.00 0.00 4.18
621 4156 1.442184 CCGTTCCGTCACTGACTCG 60.442 63.158 7.58 6.74 0.00 4.18
622 4157 1.733399 GCCGTTCCGTCACTGACTC 60.733 63.158 7.58 0.00 0.00 3.36
623 4158 2.338984 GCCGTTCCGTCACTGACT 59.661 61.111 7.58 0.00 0.00 3.41
624 4159 2.028484 TGCCGTTCCGTCACTGAC 59.972 61.111 0.00 0.00 0.00 3.51
625 4160 2.028484 GTGCCGTTCCGTCACTGA 59.972 61.111 0.00 0.00 0.00 3.41
626 4161 3.041940 GGTGCCGTTCCGTCACTG 61.042 66.667 0.00 0.00 0.00 3.66
627 4162 4.309950 GGGTGCCGTTCCGTCACT 62.310 66.667 0.00 0.00 0.00 3.41
628 4163 4.309950 AGGGTGCCGTTCCGTCAC 62.310 66.667 0.00 0.00 0.00 3.67
629 4164 4.308458 CAGGGTGCCGTTCCGTCA 62.308 66.667 0.00 0.00 0.00 4.35
647 4182 4.864334 GGATCCCCTGCTGTGCGG 62.864 72.222 0.00 0.00 34.23 5.69
648 4183 3.746949 GAGGATCCCCTGCTGTGCG 62.747 68.421 8.55 0.00 44.53 5.34
649 4184 2.191641 GAGGATCCCCTGCTGTGC 59.808 66.667 8.55 0.00 44.53 4.57
650 4185 2.303549 GACGAGGATCCCCTGCTGTG 62.304 65.000 8.55 0.00 44.53 3.66
651 4186 2.039624 ACGAGGATCCCCTGCTGT 59.960 61.111 8.55 0.00 44.53 4.40
652 4187 2.801631 GGACGAGGATCCCCTGCTG 61.802 68.421 8.55 0.00 44.53 4.41
653 4188 2.444895 GGACGAGGATCCCCTGCT 60.445 66.667 8.55 0.00 44.53 4.24
654 4189 3.917760 CGGACGAGGATCCCCTGC 61.918 72.222 8.55 0.00 44.53 4.85
655 4190 2.442272 ACGGACGAGGATCCCCTG 60.442 66.667 8.55 0.45 44.53 4.45
657 4192 4.222847 GCACGGACGAGGATCCCC 62.223 72.222 8.55 0.79 35.03 4.81
658 4193 4.222847 GGCACGGACGAGGATCCC 62.223 72.222 8.55 0.00 35.03 3.85
780 4318 0.176680 AGCGGCATCTACTGGTTGAG 59.823 55.000 1.45 0.00 0.00 3.02
826 4364 2.864097 GCGTACAGACTAGGCATGGATG 60.864 54.545 0.00 0.00 0.00 3.51
827 4365 1.341531 GCGTACAGACTAGGCATGGAT 59.658 52.381 0.00 0.00 0.00 3.41
828 4366 0.744874 GCGTACAGACTAGGCATGGA 59.255 55.000 0.00 0.00 0.00 3.41
829 4367 0.249489 GGCGTACAGACTAGGCATGG 60.249 60.000 0.00 0.00 0.00 3.66
830 4368 0.249489 GGGCGTACAGACTAGGCATG 60.249 60.000 0.00 0.00 0.00 4.06
831 4369 1.400530 GGGGCGTACAGACTAGGCAT 61.401 60.000 0.00 0.00 0.00 4.40
832 4370 2.056223 GGGGCGTACAGACTAGGCA 61.056 63.158 0.00 0.00 0.00 4.75
833 4371 1.757340 AGGGGCGTACAGACTAGGC 60.757 63.158 0.00 0.00 0.00 3.93
834 4372 1.392710 CCAGGGGCGTACAGACTAGG 61.393 65.000 0.00 0.00 0.00 3.02
835 4373 0.683504 ACCAGGGGCGTACAGACTAG 60.684 60.000 0.00 0.00 0.00 2.57
836 4374 0.682209 GACCAGGGGCGTACAGACTA 60.682 60.000 0.00 0.00 0.00 2.59
837 4375 1.982938 GACCAGGGGCGTACAGACT 60.983 63.158 0.00 0.00 0.00 3.24
838 4376 0.682209 TAGACCAGGGGCGTACAGAC 60.682 60.000 0.00 0.00 0.00 3.51
839 4377 0.395311 CTAGACCAGGGGCGTACAGA 60.395 60.000 0.00 0.00 0.00 3.41
840 4378 2.017559 GCTAGACCAGGGGCGTACAG 62.018 65.000 0.00 0.00 0.00 2.74
841 4379 2.056223 GCTAGACCAGGGGCGTACA 61.056 63.158 0.00 0.00 0.00 2.90
842 4380 2.813200 GCTAGACCAGGGGCGTAC 59.187 66.667 0.00 0.00 0.00 3.67
907 4559 1.820906 ATGCATGCTGCTACACCGG 60.821 57.895 20.33 0.00 45.31 5.28
908 4560 1.354155 CATGCATGCTGCTACACCG 59.646 57.895 20.33 0.00 45.31 4.94
938 4606 6.892658 TTGCTTTGCATAAAGGAAGTAAGA 57.107 33.333 1.36 0.00 45.47 2.10
962 4656 5.857845 AGGCTTGAGGGTATTTATAGGGATT 59.142 40.000 0.00 0.00 0.00 3.01
1058 4755 0.835941 GTGATGGATGGAGCTCTGGT 59.164 55.000 14.64 0.00 0.00 4.00
1507 5207 1.078143 GCTTGCCACGGAGAGGATT 60.078 57.895 0.00 0.00 42.26 3.01
1512 5212 3.329889 ATGGGCTTGCCACGGAGA 61.330 61.111 14.04 0.00 0.00 3.71
1805 5515 0.801251 CCTTGCTCAGCTTGCAGTAC 59.199 55.000 10.52 0.00 41.71 2.73
1858 5568 1.142060 TCTTGTACCCAACCACCACAG 59.858 52.381 0.00 0.00 0.00 3.66
1966 5680 3.084786 CCTCTTGGGAGAATTTGGACAC 58.915 50.000 0.00 0.00 41.86 3.67
1981 5703 6.095377 GGATAACAAAATGCACTTCCTCTTG 58.905 40.000 0.00 0.00 0.00 3.02
2272 6529 4.164221 ACCGATCCATGTTTTAGGAGATGT 59.836 41.667 0.00 0.00 37.34 3.06
2335 7304 6.475596 TCAGGTACCTAACTTATAGTTGGC 57.524 41.667 15.80 0.00 39.11 4.52
2379 7882 2.158726 ACCTAACGGCTCTGGTTGAAAA 60.159 45.455 0.00 0.00 0.00 2.29
2412 7915 6.817270 ACAATGCGCAATCTATTTTTGATC 57.183 33.333 17.11 0.00 0.00 2.92
2426 7929 2.677836 GGTAGAAGATGAACAATGCGCA 59.322 45.455 14.96 14.96 0.00 6.09
2427 7930 2.939103 AGGTAGAAGATGAACAATGCGC 59.061 45.455 0.00 0.00 0.00 6.09
2487 7996 1.264749 ATGGAGGCTGACGGTTAGCA 61.265 55.000 23.82 6.22 42.88 3.49
2488 7997 0.530870 GATGGAGGCTGACGGTTAGC 60.531 60.000 15.82 15.82 40.41 3.09
2550 8060 1.294780 GAGGCCTAGATGGATGGCG 59.705 63.158 4.42 0.00 46.97 5.69
2844 8823 0.761702 TCTATCGTTAGGGGTGGGGC 60.762 60.000 0.80 0.00 0.00 5.80
2883 8862 2.654079 CCTGGCCAGAGAAGTCGCT 61.654 63.158 34.91 0.00 0.00 4.93
2905 8884 1.547901 CCCCCTTTCTTCCTTCACACC 60.548 57.143 0.00 0.00 0.00 4.16
2981 8960 2.188817 CTTAGACCTAGCCACACCCTT 58.811 52.381 0.00 0.00 0.00 3.95
2983 8962 1.481363 GACTTAGACCTAGCCACACCC 59.519 57.143 0.00 0.00 0.00 4.61
2984 8963 1.134560 CGACTTAGACCTAGCCACACC 59.865 57.143 0.00 0.00 0.00 4.16
2985 8964 2.089980 TCGACTTAGACCTAGCCACAC 58.910 52.381 0.00 0.00 0.00 3.82
2986 8965 2.089980 GTCGACTTAGACCTAGCCACA 58.910 52.381 8.70 0.00 35.22 4.17
2987 8966 2.097791 CAGTCGACTTAGACCTAGCCAC 59.902 54.545 17.26 0.00 41.83 5.01
2988 8967 2.026542 TCAGTCGACTTAGACCTAGCCA 60.027 50.000 17.26 0.00 41.83 4.75
2989 8968 2.614983 CTCAGTCGACTTAGACCTAGCC 59.385 54.545 19.88 0.00 41.83 3.93
2990 8969 3.310501 GTCTCAGTCGACTTAGACCTAGC 59.689 52.174 34.68 18.86 39.89 3.42
3081 9061 5.638657 TCCTTTGATTTTGCATGGAAATTCG 59.361 36.000 21.78 12.37 0.00 3.34
3084 9064 6.771573 TCTTCCTTTGATTTTGCATGGAAAT 58.228 32.000 13.51 3.99 33.50 2.17
3085 9065 6.172136 TCTTCCTTTGATTTTGCATGGAAA 57.828 33.333 8.47 8.47 33.50 3.13
3086 9066 5.804944 TCTTCCTTTGATTTTGCATGGAA 57.195 34.783 0.00 0.00 33.14 3.53
3087 9067 6.406177 GCTATCTTCCTTTGATTTTGCATGGA 60.406 38.462 0.00 0.00 0.00 3.41
3104 9084 7.708322 TGTTATGTCTCAGTTGATGCTATCTTC 59.292 37.037 0.00 0.00 0.00 2.87
3112 9092 8.092521 AGACTTTTGTTATGTCTCAGTTGATG 57.907 34.615 0.00 0.00 36.78 3.07
3136 9116 7.439655 AGTTTTGCTTAGTCTAAGTTGACTGAG 59.560 37.037 18.72 16.17 46.73 3.35
3140 9120 7.478520 TCAGTTTTGCTTAGTCTAAGTTGAC 57.521 36.000 18.72 12.79 38.07 3.18
3143 9123 8.722394 GCTATTCAGTTTTGCTTAGTCTAAGTT 58.278 33.333 18.72 0.00 38.07 2.66
3147 9127 8.615878 TTTGCTATTCAGTTTTGCTTAGTCTA 57.384 30.769 0.00 0.00 0.00 2.59
3153 9133 5.917462 AGGTTTTGCTATTCAGTTTTGCTT 58.083 33.333 0.00 0.00 0.00 3.91
3307 9288 2.416432 GGGCCGCTCGTAGAAGAGT 61.416 63.158 0.00 0.00 40.26 3.24
3402 9383 5.508224 GTGCAATAAGTAATGTTCTTCACGC 59.492 40.000 0.00 0.00 0.00 5.34
3436 9580 3.734597 GCTGTCATGACAAAGTTGTGCAA 60.735 43.478 27.63 2.15 42.43 4.08
3865 10013 3.937706 ACGTGTAGCTAGACGACATACTT 59.062 43.478 39.85 19.61 44.54 2.24
3867 10015 3.605406 CACGTGTAGCTAGACGACATAC 58.395 50.000 39.85 10.30 44.54 2.39
3868 10016 2.031314 GCACGTGTAGCTAGACGACATA 59.969 50.000 39.85 0.00 44.54 2.29
3870 10018 0.167470 GCACGTGTAGCTAGACGACA 59.833 55.000 39.85 15.84 44.54 4.35
3871 10019 0.167470 TGCACGTGTAGCTAGACGAC 59.833 55.000 39.85 31.02 44.54 4.34
3872 10020 1.092348 ATGCACGTGTAGCTAGACGA 58.908 50.000 39.85 23.82 44.54 4.20
3873 10021 1.191944 CATGCACGTGTAGCTAGACG 58.808 55.000 34.05 34.05 46.73 4.18
3874 10022 2.279582 ACATGCACGTGTAGCTAGAC 57.720 50.000 18.38 10.93 0.00 2.59
3880 10383 2.411748 CACTGGTTACATGCACGTGTAG 59.588 50.000 18.38 9.79 36.08 2.74
3903 10406 1.065636 ACATCAGTCATCAGCCAGTGG 60.066 52.381 4.20 4.20 0.00 4.00
3904 10407 2.007608 CACATCAGTCATCAGCCAGTG 58.992 52.381 0.00 0.00 0.00 3.66
3905 10408 1.627329 ACACATCAGTCATCAGCCAGT 59.373 47.619 0.00 0.00 0.00 4.00
3906 10409 2.398252 ACACATCAGTCATCAGCCAG 57.602 50.000 0.00 0.00 0.00 4.85
3907 10410 2.815503 CAAACACATCAGTCATCAGCCA 59.184 45.455 0.00 0.00 0.00 4.75
3908 10411 2.816087 ACAAACACATCAGTCATCAGCC 59.184 45.455 0.00 0.00 0.00 4.85
4048 10552 4.719369 GTCGGCAGCTCGAACCGT 62.719 66.667 13.44 0.00 46.92 4.83
4254 10758 7.651027 TGTAGTTATTGTTCCTAGTAGTCCC 57.349 40.000 0.00 0.00 0.00 4.46
4270 10774 5.252969 TGCGGTCGAGTAAATGTAGTTAT 57.747 39.130 0.00 0.00 0.00 1.89
4361 10924 7.921214 GTGCAGTAGTTCAGCATATTAAGTAGA 59.079 37.037 0.00 0.00 40.45 2.59
4362 10925 7.923344 AGTGCAGTAGTTCAGCATATTAAGTAG 59.077 37.037 0.00 0.00 40.45 2.57
4363 10926 7.782049 AGTGCAGTAGTTCAGCATATTAAGTA 58.218 34.615 0.00 0.00 40.45 2.24
4365 10928 7.545362 AAGTGCAGTAGTTCAGCATATTAAG 57.455 36.000 0.00 0.00 40.45 1.85
4366 10929 9.613428 AATAAGTGCAGTAGTTCAGCATATTAA 57.387 29.630 0.00 0.00 40.45 1.40
4480 13924 3.005539 GTGGAGGGAGGCTGAGCA 61.006 66.667 6.82 0.00 0.00 4.26
4481 13925 3.791586 GGTGGAGGGAGGCTGAGC 61.792 72.222 0.00 0.00 0.00 4.26
4482 13926 3.086600 GGGTGGAGGGAGGCTGAG 61.087 72.222 0.00 0.00 0.00 3.35
4558 14043 4.202070 CCTTTAAAAAGAAGAACGGCACCA 60.202 41.667 4.01 0.00 38.28 4.17
4570 14058 1.886886 AGACGGCGCCTTTAAAAAGA 58.113 45.000 26.68 0.00 38.28 2.52
4571 14059 2.699251 AAGACGGCGCCTTTAAAAAG 57.301 45.000 26.68 8.67 35.79 2.27
4572 14060 2.358267 TCAAAGACGGCGCCTTTAAAAA 59.642 40.909 26.68 4.75 33.03 1.94
4574 14065 1.533731 CTCAAAGACGGCGCCTTTAAA 59.466 47.619 26.68 11.08 33.03 1.52
4577 14068 0.951040 CTCTCAAAGACGGCGCCTTT 60.951 55.000 26.68 15.55 34.46 3.11
4587 14078 4.157656 CACCAACCAAACAACTCTCAAAGA 59.842 41.667 0.00 0.00 0.00 2.52
4665 14156 2.028294 CGCAGAAGAGGGATAGCATCAT 60.028 50.000 0.00 0.00 0.00 2.45
4796 14290 4.692625 CACTGTCGAAAGATGGAGATGTTT 59.307 41.667 10.30 0.00 45.19 2.83
4811 14305 3.350909 ATAAGCGCCGCACTGTCGA 62.351 57.895 13.36 0.00 0.00 4.20
4816 14310 2.278857 CTCGATAAGCGCCGCACT 60.279 61.111 13.36 0.00 40.61 4.40
4845 14339 1.605712 GGAAGACACAACCTCCTCGTG 60.606 57.143 0.00 0.00 36.70 4.35
4872 14428 5.007332 GTGATCACCAAACAACTACGAAACT 59.993 40.000 15.31 0.00 0.00 2.66
4874 14430 4.876679 TGTGATCACCAAACAACTACGAAA 59.123 37.500 22.85 0.00 0.00 3.46
4876 14432 4.061357 TGTGATCACCAAACAACTACGA 57.939 40.909 22.85 0.00 0.00 3.43
4915 14471 0.179936 GCACAGAGGAGAAGGGATGG 59.820 60.000 0.00 0.00 0.00 3.51
4976 14533 1.407258 GTAGCTGAAGACATCGAGGCT 59.593 52.381 0.00 0.00 36.92 4.58
5050 14609 9.383519 CCGGTAAGATACATATGCATTAGAAAT 57.616 33.333 3.54 0.00 0.00 2.17
5058 14621 4.101898 ACAACCCGGTAAGATACATATGCA 59.898 41.667 1.58 0.00 0.00 3.96
5076 14642 3.069289 ACCGACGAAAGGAAATACAACC 58.931 45.455 0.00 0.00 0.00 3.77
5092 14658 0.038526 ACAGATCACACGGAACCGAC 60.039 55.000 20.14 4.28 42.83 4.79
5161 14738 0.612732 CAGCCAGCCTGAAATGGGAA 60.613 55.000 0.00 0.00 44.64 3.97
5162 14739 1.000521 CAGCCAGCCTGAAATGGGA 60.001 57.895 0.00 0.00 44.64 4.37
5204 14782 6.706055 ACAATACCGATGAAGCATATTACG 57.294 37.500 0.00 0.00 0.00 3.18
5231 14809 6.039270 TCCCATAATATAACAACTTGCAGCAC 59.961 38.462 0.00 0.00 0.00 4.40
5233 14811 6.633500 TCCCATAATATAACAACTTGCAGC 57.367 37.500 0.00 0.00 0.00 5.25
5234 14812 8.465999 TGTTTCCCATAATATAACAACTTGCAG 58.534 33.333 0.00 0.00 0.00 4.41
5245 14823 9.062524 CAGGACGAAAATGTTTCCCATAATATA 57.937 33.333 0.00 0.00 31.97 0.86
5254 14832 3.643159 AAGCAGGACGAAAATGTTTCC 57.357 42.857 0.00 0.00 0.00 3.13
5305 14883 4.269523 AAGGCCAGCACCTCGCAA 62.270 61.111 5.01 0.00 46.13 4.85
5306 14884 4.704833 GAAGGCCAGCACCTCGCA 62.705 66.667 5.01 0.00 46.13 5.10
5307 14885 4.400961 AGAAGGCCAGCACCTCGC 62.401 66.667 5.01 0.00 39.93 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.