Multiple sequence alignment - TraesCS4D01G297600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G297600 chr4D 100.000 5378 0 0 1 5378 466731824 466726447 0.000000e+00 9932.0
1 TraesCS4D01G297600 chr4D 92.203 1244 55 18 970 2182 466334357 466335589 0.000000e+00 1722.0
2 TraesCS4D01G297600 chr4D 89.519 1393 96 27 909 2278 466292415 466293780 0.000000e+00 1718.0
3 TraesCS4D01G297600 chr4D 91.680 1238 57 22 975 2182 466403353 466404574 0.000000e+00 1674.0
4 TraesCS4D01G297600 chr4D 96.118 850 31 2 3537 4385 466336316 466337164 0.000000e+00 1386.0
5 TraesCS4D01G297600 chr4D 96.019 854 28 3 3537 4385 466405643 466406495 0.000000e+00 1384.0
6 TraesCS4D01G297600 chr4D 92.735 234 17 0 3123 3356 466294113 466294346 6.670000e-89 339.0
7 TraesCS4D01G297600 chr4D 86.379 301 29 5 3123 3411 466335975 466336275 8.690000e-83 318.0
8 TraesCS4D01G297600 chr4D 90.476 147 12 2 2781 2927 466335732 466335876 5.500000e-45 193.0
9 TraesCS4D01G297600 chr4D 88.652 141 5 9 2795 2927 466293844 466293981 1.550000e-35 161.0
10 TraesCS4D01G297600 chr4D 89.076 119 10 3 2809 2927 466405060 466405175 1.560000e-30 145.0
11 TraesCS4D01G297600 chr4D 89.899 99 10 0 4880 4978 466726853 466726755 1.570000e-25 128.0
12 TraesCS4D01G297600 chr4D 89.899 99 10 0 4972 5070 466726945 466726847 1.570000e-25 128.0
13 TraesCS4D01G297600 chr4D 97.619 42 1 0 3455 3496 466294408 466294449 7.470000e-09 73.1
14 TraesCS4D01G297600 chr4A 91.335 2816 139 46 2623 5378 4159409 4162179 0.000000e+00 3751.0
15 TraesCS4D01G297600 chr4A 92.171 1750 81 24 442 2163 4157335 4159056 0.000000e+00 2422.0
16 TraesCS4D01G297600 chr4A 91.762 1226 63 16 897 2084 4196474 4195249 0.000000e+00 1670.0
17 TraesCS4D01G297600 chr4A 89.327 1293 66 26 909 2182 4475273 4474034 0.000000e+00 1557.0
18 TraesCS4D01G297600 chr4A 90.304 1217 68 24 910 2106 4241495 4240309 0.000000e+00 1548.0
19 TraesCS4D01G297600 chr4A 95.066 831 40 1 3555 4385 4239104 4238275 0.000000e+00 1306.0
20 TraesCS4D01G297600 chr4A 94.484 852 34 6 3537 4385 4194157 4193316 0.000000e+00 1301.0
21 TraesCS4D01G297600 chr4A 93.312 314 20 1 2221 2533 4159077 4159390 3.790000e-126 462.0
22 TraesCS4D01G297600 chr4A 85.333 450 32 19 3048 3496 4239542 4239126 8.270000e-118 435.0
23 TraesCS4D01G297600 chr4A 86.339 366 35 7 3059 3411 4473230 4472867 8.450000e-103 385.0
24 TraesCS4D01G297600 chr4A 87.838 296 24 7 3128 3411 4194493 4194198 2.400000e-88 337.0
25 TraesCS4D01G297600 chr4A 83.043 230 13 14 2796 3025 4473925 4473722 9.200000e-43 185.0
26 TraesCS4D01G297600 chr4A 90.323 93 9 0 4972 5064 4161676 4161768 7.310000e-24 122.0
27 TraesCS4D01G297600 chr4A 90.323 93 9 0 4880 4972 4161768 4161860 7.310000e-24 122.0
28 TraesCS4D01G297600 chr4A 95.745 47 2 0 29 75 4157269 4157315 5.780000e-10 76.8
29 TraesCS4D01G297600 chr4B 90.395 2103 102 35 2624 4665 584528732 584526669 0.000000e+00 2673.0
30 TraesCS4D01G297600 chr4B 89.532 1433 89 31 897 2278 584125810 584127232 0.000000e+00 1759.0
31 TraesCS4D01G297600 chr4B 89.316 1432 95 28 897 2278 584054445 584055868 0.000000e+00 1744.0
32 TraesCS4D01G297600 chr4B 92.067 1248 62 18 954 2190 583765614 583766835 0.000000e+00 1722.0
33 TraesCS4D01G297600 chr4B 94.406 858 38 3 3537 4385 584127873 584128729 0.000000e+00 1310.0
34 TraesCS4D01G297600 chr4B 93.823 858 43 3 3537 4385 584056514 584057370 0.000000e+00 1282.0
35 TraesCS4D01G297600 chr4B 96.787 747 22 2 770 1514 584530074 584529328 0.000000e+00 1245.0
36 TraesCS4D01G297600 chr4B 93.262 846 52 2 3544 4385 583767761 583768605 0.000000e+00 1242.0
37 TraesCS4D01G297600 chr4B 95.393 369 16 1 1547 1914 584529238 584528870 2.160000e-163 586.0
38 TraesCS4D01G297600 chr4B 94.928 276 13 1 453 728 584530751 584530477 1.070000e-116 431.0
39 TraesCS4D01G297600 chr4B 88.542 288 30 2 3070 3356 583767356 583767641 3.990000e-91 346.0
40 TraesCS4D01G297600 chr4B 88.294 299 22 8 4661 4957 584506263 584505976 3.990000e-91 346.0
41 TraesCS4D01G297600 chr4B 87.586 290 25 4 3123 3401 584127529 584127818 5.190000e-85 326.0
42 TraesCS4D01G297600 chr4B 87.004 277 29 2 5107 5378 584505973 584505699 6.770000e-79 305.0
43 TraesCS4D01G297600 chr4B 92.623 122 7 2 2806 2927 584055917 584056036 1.990000e-39 174.0
44 TraesCS4D01G297600 chr4B 92.623 122 7 2 2806 2927 584127281 584127400 1.990000e-39 174.0
45 TraesCS4D01G297600 chr4B 92.373 118 8 1 2781 2898 583766948 583767064 3.330000e-37 167.0
46 TraesCS4D01G297600 chr4B 87.805 82 4 3 3416 3496 583767675 583767751 2.060000e-14 91.6
47 TraesCS4D01G297600 chrUn 95.263 380 17 1 1574 1952 479224296 479223917 7.710000e-168 601.0
48 TraesCS4D01G297600 chrUn 97.297 37 1 0 115 151 73966727 73966691 4.500000e-06 63.9
49 TraesCS4D01G297600 chr7D 94.444 54 3 0 109 162 41832188 41832135 3.450000e-12 84.2
50 TraesCS4D01G297600 chr7D 92.593 54 4 0 109 162 41932770 41932823 1.610000e-10 78.7
51 TraesCS4D01G297600 chr3D 97.674 43 1 0 116 158 595029145 595029187 2.080000e-09 75.0
52 TraesCS4D01G297600 chr6A 81.319 91 14 3 4489 4578 532849205 532849293 2.690000e-08 71.3
53 TraesCS4D01G297600 chr5D 87.302 63 6 2 4498 4559 468831000 468830939 2.690000e-08 71.3
54 TraesCS4D01G297600 chr7B 87.500 56 5 2 4490 4544 570400576 570400630 4.500000e-06 63.9
55 TraesCS4D01G297600 chr7B 97.059 34 1 0 409 442 571181602 571181635 2.090000e-04 58.4
56 TraesCS4D01G297600 chr5A 92.857 42 3 0 601 642 63381595 63381554 1.620000e-05 62.1
57 TraesCS4D01G297600 chr1A 91.111 45 4 0 409 453 544205812 544205856 1.620000e-05 62.1
58 TraesCS4D01G297600 chr1B 97.059 34 1 0 409 442 398070556 398070523 2.090000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G297600 chr4D 466726447 466731824 5377 True 9932.000000 9932 100.000000 1 5378 1 chr4D.!!$R1 5377
1 TraesCS4D01G297600 chr4D 466403353 466406495 3142 False 1067.666667 1674 92.258333 975 4385 3 chr4D.!!$F3 3410
2 TraesCS4D01G297600 chr4D 466334357 466337164 2807 False 904.750000 1722 91.294000 970 4385 4 chr4D.!!$F2 3415
3 TraesCS4D01G297600 chr4D 466292415 466294449 2034 False 572.775000 1718 92.131250 909 3496 4 chr4D.!!$F1 2587
4 TraesCS4D01G297600 chr4A 4157269 4162179 4910 False 1159.300000 3751 92.201500 29 5378 6 chr4A.!!$F1 5349
5 TraesCS4D01G297600 chr4A 4193316 4196474 3158 True 1102.666667 1670 91.361333 897 4385 3 chr4A.!!$R1 3488
6 TraesCS4D01G297600 chr4A 4238275 4241495 3220 True 1096.333333 1548 90.234333 910 4385 3 chr4A.!!$R2 3475
7 TraesCS4D01G297600 chr4A 4472867 4475273 2406 True 709.000000 1557 86.236333 909 3411 3 chr4A.!!$R3 2502
8 TraesCS4D01G297600 chr4B 584526669 584530751 4082 True 1233.750000 2673 94.375750 453 4665 4 chr4B.!!$R2 4212
9 TraesCS4D01G297600 chr4B 584054445 584057370 2925 False 1066.666667 1744 91.920667 897 4385 3 chr4B.!!$F2 3488
10 TraesCS4D01G297600 chr4B 584125810 584128729 2919 False 892.250000 1759 91.036750 897 4385 4 chr4B.!!$F3 3488
11 TraesCS4D01G297600 chr4B 583765614 583768605 2991 False 713.720000 1722 90.809800 954 4385 5 chr4B.!!$F1 3431
12 TraesCS4D01G297600 chr4B 584505699 584506263 564 True 325.500000 346 87.649000 4661 5378 2 chr4B.!!$R1 717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
369 370 0.178068 CCCCTGTAATGGTCCGTGAG 59.822 60.0 0.00 0.0 0.00 3.51 F
413 414 0.251165 GGGTAACAAAGCCTGCCTGA 60.251 55.0 0.00 0.0 42.89 3.86 F
1810 2264 0.318360 GGCAAACCAAGGTGCGTAAC 60.318 55.0 0.00 0.0 41.85 2.50 F
2612 3892 0.176910 TCCAGCGACATATTTCGGCA 59.823 50.0 12.84 0.0 39.50 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2148 3159 0.321653 GCAACGGGTCAGGACAAGAT 60.322 55.0 1.41 0.00 0.00 2.40 R
2163 3174 1.609932 CGCATGATGAAGTGTGCAAC 58.390 50.0 0.00 0.00 37.44 4.17 R
3535 5797 0.325602 TGAGATGTGCATGCTGGTCA 59.674 50.0 20.33 12.76 0.00 4.02 R
4487 6783 0.836606 TGAGAATTAGCCGCATCCCA 59.163 50.0 0.00 0.00 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.281212 ACATATGAAATAACCTTGAAGTGGAC 57.719 34.615 10.38 0.00 29.06 4.02
26 27 7.339466 ACATATGAAATAACCTTGAAGTGGACC 59.661 37.037 10.38 0.00 29.06 4.46
27 28 4.403734 TGAAATAACCTTGAAGTGGACCC 58.596 43.478 0.00 0.00 0.00 4.46
56 57 8.668510 TTTAAGATCATATGAGAGGCAAAGAC 57.331 34.615 11.78 0.00 0.00 3.01
64 65 3.819368 TGAGAGGCAAAGACAACAATGA 58.181 40.909 0.00 0.00 0.00 2.57
71 72 6.815089 AGGCAAAGACAACAATGATAAACAA 58.185 32.000 0.00 0.00 0.00 2.83
72 73 7.444299 AGGCAAAGACAACAATGATAAACAAT 58.556 30.769 0.00 0.00 0.00 2.71
73 74 8.584157 AGGCAAAGACAACAATGATAAACAATA 58.416 29.630 0.00 0.00 0.00 1.90
74 75 8.647226 GGCAAAGACAACAATGATAAACAATAC 58.353 33.333 0.00 0.00 0.00 1.89
75 76 9.410556 GCAAAGACAACAATGATAAACAATACT 57.589 29.630 0.00 0.00 0.00 2.12
92 93 8.552469 AACAATACTACATACGAATGTACGAC 57.448 34.615 0.00 0.00 44.66 4.34
93 94 7.696755 ACAATACTACATACGAATGTACGACA 58.303 34.615 0.00 0.00 44.66 4.35
97 98 6.427974 ACTACATACGAATGTACGACAGATG 58.572 40.000 0.00 0.00 44.66 2.90
101 102 1.533129 CGAATGTACGACAGATGCGGA 60.533 52.381 0.00 0.00 35.09 5.54
104 105 3.411808 GTACGACAGATGCGGACAA 57.588 52.632 0.00 0.00 42.03 3.18
105 106 0.989890 GTACGACAGATGCGGACAAC 59.010 55.000 0.00 0.00 42.03 3.32
106 107 2.632456 GTACGACAGATGCGGACAACG 61.632 57.143 0.00 0.00 42.03 4.10
117 118 2.750815 GGACAACGACGGATTCAGG 58.249 57.895 0.00 0.00 0.00 3.86
118 119 1.359459 GGACAACGACGGATTCAGGC 61.359 60.000 0.00 0.00 0.00 4.85
120 121 2.813908 AACGACGGATTCAGGCGC 60.814 61.111 12.12 0.00 45.40 6.53
121 122 4.814294 ACGACGGATTCAGGCGCC 62.814 66.667 21.89 21.89 45.40 6.53
122 123 4.812476 CGACGGATTCAGGCGCCA 62.812 66.667 31.54 8.70 31.51 5.69
123 124 2.892425 GACGGATTCAGGCGCCAG 60.892 66.667 31.54 22.82 0.00 4.85
124 125 4.473520 ACGGATTCAGGCGCCAGG 62.474 66.667 31.54 20.82 0.00 4.45
126 127 4.802051 GGATTCAGGCGCCAGGCA 62.802 66.667 31.54 11.50 46.16 4.75
127 128 3.207669 GATTCAGGCGCCAGGCAG 61.208 66.667 31.54 12.80 46.16 4.85
163 164 3.680156 GCGTGAGGCCCAATTCAA 58.320 55.556 0.00 0.00 34.80 2.69
164 165 2.192605 GCGTGAGGCCCAATTCAAT 58.807 52.632 0.00 0.00 34.80 2.57
165 166 0.532115 GCGTGAGGCCCAATTCAATT 59.468 50.000 0.00 0.00 34.80 2.32
166 167 1.736696 GCGTGAGGCCCAATTCAATTG 60.737 52.381 0.00 2.80 39.94 2.32
167 168 1.545582 CGTGAGGCCCAATTCAATTGT 59.454 47.619 9.31 0.00 38.59 2.71
168 169 2.029110 CGTGAGGCCCAATTCAATTGTT 60.029 45.455 9.31 0.00 38.59 2.83
169 170 3.328505 GTGAGGCCCAATTCAATTGTTG 58.671 45.455 9.31 3.64 38.59 3.33
170 171 3.006752 GTGAGGCCCAATTCAATTGTTGA 59.993 43.478 9.31 0.00 38.59 3.18
171 172 3.006752 TGAGGCCCAATTCAATTGTTGAC 59.993 43.478 9.31 2.29 39.87 3.18
172 173 3.242011 AGGCCCAATTCAATTGTTGACT 58.758 40.909 9.31 4.58 39.87 3.41
173 174 3.007182 AGGCCCAATTCAATTGTTGACTG 59.993 43.478 9.31 0.00 39.87 3.51
174 175 2.738314 GCCCAATTCAATTGTTGACTGC 59.262 45.455 9.31 4.28 39.87 4.40
175 176 3.803021 GCCCAATTCAATTGTTGACTGCA 60.803 43.478 9.31 0.00 39.87 4.41
176 177 4.378774 CCCAATTCAATTGTTGACTGCAA 58.621 39.130 9.31 0.00 39.87 4.08
189 190 2.739913 TGACTGCAACATTTACCGTAGC 59.260 45.455 0.00 0.00 0.00 3.58
190 191 3.000727 GACTGCAACATTTACCGTAGCT 58.999 45.455 0.00 0.00 0.00 3.32
191 192 4.178540 GACTGCAACATTTACCGTAGCTA 58.821 43.478 0.00 0.00 0.00 3.32
192 193 4.766375 ACTGCAACATTTACCGTAGCTAT 58.234 39.130 0.00 0.00 0.00 2.97
193 194 5.909477 ACTGCAACATTTACCGTAGCTATA 58.091 37.500 0.00 0.00 0.00 1.31
194 195 6.522054 ACTGCAACATTTACCGTAGCTATAT 58.478 36.000 0.00 0.00 0.00 0.86
195 196 7.663827 ACTGCAACATTTACCGTAGCTATATA 58.336 34.615 0.00 0.00 0.00 0.86
196 197 7.813148 ACTGCAACATTTACCGTAGCTATATAG 59.187 37.037 5.30 5.30 0.00 1.31
209 210 3.917444 GCTATATAGCGCTCGAAATTGC 58.083 45.455 16.34 12.10 39.82 3.56
210 211 3.614616 GCTATATAGCGCTCGAAATTGCT 59.385 43.478 16.34 5.79 39.82 3.91
211 212 4.798907 GCTATATAGCGCTCGAAATTGCTA 59.201 41.667 16.34 9.18 43.40 3.49
212 213 5.288712 GCTATATAGCGCTCGAAATTGCTAA 59.711 40.000 16.34 0.00 42.60 3.09
213 214 6.183360 GCTATATAGCGCTCGAAATTGCTAAA 60.183 38.462 16.34 0.00 42.60 1.85
214 215 2.527442 AGCGCTCGAAATTGCTAAAC 57.473 45.000 2.64 0.00 35.56 2.01
215 216 1.171876 GCGCTCGAAATTGCTAAACG 58.828 50.000 0.00 0.00 0.00 3.60
216 217 1.171876 CGCTCGAAATTGCTAAACGC 58.828 50.000 0.00 0.00 39.77 4.84
224 225 2.422165 TGCTAAACGCACGGACCA 59.578 55.556 0.00 0.00 45.47 4.02
225 226 1.227586 TGCTAAACGCACGGACCAA 60.228 52.632 0.00 0.00 45.47 3.67
226 227 0.604243 TGCTAAACGCACGGACCAAT 60.604 50.000 0.00 0.00 45.47 3.16
227 228 0.519961 GCTAAACGCACGGACCAATT 59.480 50.000 0.00 0.00 38.92 2.32
228 229 1.733360 GCTAAACGCACGGACCAATTA 59.267 47.619 0.00 0.00 38.92 1.40
229 230 2.475022 GCTAAACGCACGGACCAATTAC 60.475 50.000 0.00 0.00 38.92 1.89
230 231 1.595466 AAACGCACGGACCAATTACA 58.405 45.000 0.00 0.00 0.00 2.41
231 232 1.153353 AACGCACGGACCAATTACAG 58.847 50.000 0.00 0.00 0.00 2.74
232 233 0.672401 ACGCACGGACCAATTACAGG 60.672 55.000 0.00 0.00 0.00 4.00
233 234 0.390603 CGCACGGACCAATTACAGGA 60.391 55.000 0.00 0.00 0.00 3.86
234 235 1.742411 CGCACGGACCAATTACAGGAT 60.742 52.381 0.00 0.00 0.00 3.24
235 236 1.670811 GCACGGACCAATTACAGGATG 59.329 52.381 0.00 0.00 46.00 3.51
236 237 2.679639 GCACGGACCAATTACAGGATGA 60.680 50.000 0.00 0.00 39.69 2.92
237 238 3.808728 CACGGACCAATTACAGGATGAT 58.191 45.455 0.00 0.00 39.69 2.45
238 239 3.809832 CACGGACCAATTACAGGATGATC 59.190 47.826 0.00 0.00 39.69 2.92
239 240 3.454447 ACGGACCAATTACAGGATGATCA 59.546 43.478 0.00 0.00 39.69 2.92
240 241 3.809832 CGGACCAATTACAGGATGATCAC 59.190 47.826 0.00 0.00 39.69 3.06
241 242 3.809832 GGACCAATTACAGGATGATCACG 59.190 47.826 0.00 0.00 39.69 4.35
242 243 3.808728 ACCAATTACAGGATGATCACGG 58.191 45.455 0.00 0.00 39.69 4.94
243 244 3.141398 CCAATTACAGGATGATCACGGG 58.859 50.000 0.00 0.00 39.69 5.28
244 245 2.549754 CAATTACAGGATGATCACGGGC 59.450 50.000 0.00 0.00 39.69 6.13
245 246 0.468226 TTACAGGATGATCACGGGCC 59.532 55.000 0.00 0.00 39.69 5.80
246 247 1.407656 TACAGGATGATCACGGGCCC 61.408 60.000 13.57 13.57 39.69 5.80
247 248 3.171388 AGGATGATCACGGGCCCC 61.171 66.667 18.66 1.13 0.00 5.80
248 249 3.171388 GGATGATCACGGGCCCCT 61.171 66.667 18.66 0.12 0.00 4.79
249 250 2.757124 GGATGATCACGGGCCCCTT 61.757 63.158 18.66 0.00 0.00 3.95
250 251 1.227973 GATGATCACGGGCCCCTTC 60.228 63.158 18.66 8.60 0.00 3.46
251 252 2.682582 GATGATCACGGGCCCCTTCC 62.683 65.000 18.66 2.22 0.00 3.46
252 253 3.090532 GATCACGGGCCCCTTCCT 61.091 66.667 18.66 0.00 0.00 3.36
253 254 3.090532 ATCACGGGCCCCTTCCTC 61.091 66.667 18.66 0.00 0.00 3.71
254 255 3.642741 ATCACGGGCCCCTTCCTCT 62.643 63.158 18.66 0.00 0.00 3.69
255 256 2.252012 ATCACGGGCCCCTTCCTCTA 62.252 60.000 18.66 0.00 0.00 2.43
256 257 1.993391 CACGGGCCCCTTCCTCTAA 60.993 63.158 18.66 0.00 0.00 2.10
257 258 1.004361 ACGGGCCCCTTCCTCTAAT 59.996 57.895 18.66 0.00 0.00 1.73
258 259 1.054978 ACGGGCCCCTTCCTCTAATC 61.055 60.000 18.66 0.00 0.00 1.75
259 260 1.769716 CGGGCCCCTTCCTCTAATCC 61.770 65.000 18.66 0.00 0.00 3.01
260 261 0.402126 GGGCCCCTTCCTCTAATCCT 60.402 60.000 12.23 0.00 0.00 3.24
261 262 1.060729 GGCCCCTTCCTCTAATCCTC 58.939 60.000 0.00 0.00 0.00 3.71
262 263 1.415273 GGCCCCTTCCTCTAATCCTCT 60.415 57.143 0.00 0.00 0.00 3.69
263 264 1.974957 GCCCCTTCCTCTAATCCTCTC 59.025 57.143 0.00 0.00 0.00 3.20
264 265 2.615391 CCCCTTCCTCTAATCCTCTCC 58.385 57.143 0.00 0.00 0.00 3.71
265 266 2.090494 CCCCTTCCTCTAATCCTCTCCA 60.090 54.545 0.00 0.00 0.00 3.86
266 267 2.969262 CCCTTCCTCTAATCCTCTCCAC 59.031 54.545 0.00 0.00 0.00 4.02
267 268 2.969262 CCTTCCTCTAATCCTCTCCACC 59.031 54.545 0.00 0.00 0.00 4.61
268 269 2.777459 TCCTCTAATCCTCTCCACCC 57.223 55.000 0.00 0.00 0.00 4.61
269 270 1.220750 TCCTCTAATCCTCTCCACCCC 59.779 57.143 0.00 0.00 0.00 4.95
270 271 1.221781 CCTCTAATCCTCTCCACCCCT 59.778 57.143 0.00 0.00 0.00 4.79
271 272 2.604139 CTCTAATCCTCTCCACCCCTC 58.396 57.143 0.00 0.00 0.00 4.30
272 273 1.220750 TCTAATCCTCTCCACCCCTCC 59.779 57.143 0.00 0.00 0.00 4.30
273 274 1.221781 CTAATCCTCTCCACCCCTCCT 59.778 57.143 0.00 0.00 0.00 3.69
274 275 0.423544 AATCCTCTCCACCCCTCCTT 59.576 55.000 0.00 0.00 0.00 3.36
275 276 0.327000 ATCCTCTCCACCCCTCCTTG 60.327 60.000 0.00 0.00 0.00 3.61
276 277 1.081092 CCTCTCCACCCCTCCTTGA 59.919 63.158 0.00 0.00 0.00 3.02
277 278 0.327000 CCTCTCCACCCCTCCTTGAT 60.327 60.000 0.00 0.00 0.00 2.57
278 279 1.589414 CTCTCCACCCCTCCTTGATT 58.411 55.000 0.00 0.00 0.00 2.57
279 280 1.918957 CTCTCCACCCCTCCTTGATTT 59.081 52.381 0.00 0.00 0.00 2.17
280 281 2.310052 CTCTCCACCCCTCCTTGATTTT 59.690 50.000 0.00 0.00 0.00 1.82
281 282 2.308866 TCTCCACCCCTCCTTGATTTTC 59.691 50.000 0.00 0.00 0.00 2.29
282 283 2.041620 CTCCACCCCTCCTTGATTTTCA 59.958 50.000 0.00 0.00 0.00 2.69
283 284 2.041620 TCCACCCCTCCTTGATTTTCAG 59.958 50.000 0.00 0.00 0.00 3.02
284 285 2.450476 CACCCCTCCTTGATTTTCAGG 58.550 52.381 0.00 0.00 0.00 3.86
285 286 2.073776 ACCCCTCCTTGATTTTCAGGT 58.926 47.619 0.00 0.00 0.00 4.00
286 287 2.225117 ACCCCTCCTTGATTTTCAGGTG 60.225 50.000 0.00 0.00 0.00 4.00
287 288 2.450476 CCCTCCTTGATTTTCAGGTGG 58.550 52.381 0.00 0.00 32.80 4.61
288 289 2.450476 CCTCCTTGATTTTCAGGTGGG 58.550 52.381 0.00 0.00 31.10 4.61
289 290 2.225117 CCTCCTTGATTTTCAGGTGGGT 60.225 50.000 0.00 0.00 31.10 4.51
290 291 3.500343 CTCCTTGATTTTCAGGTGGGTT 58.500 45.455 0.00 0.00 0.00 4.11
291 292 3.230134 TCCTTGATTTTCAGGTGGGTTG 58.770 45.455 0.00 0.00 0.00 3.77
292 293 2.299867 CCTTGATTTTCAGGTGGGTTGG 59.700 50.000 0.00 0.00 0.00 3.77
293 294 2.008242 TGATTTTCAGGTGGGTTGGG 57.992 50.000 0.00 0.00 0.00 4.12
294 295 0.608130 GATTTTCAGGTGGGTTGGGC 59.392 55.000 0.00 0.00 0.00 5.36
295 296 0.835971 ATTTTCAGGTGGGTTGGGCC 60.836 55.000 0.00 0.00 0.00 5.80
309 310 4.118312 GGCCCCTCCTCCCCCTTA 62.118 72.222 0.00 0.00 0.00 2.69
310 311 2.043941 GCCCCTCCTCCCCCTTAA 59.956 66.667 0.00 0.00 0.00 1.85
311 312 2.384433 GCCCCTCCTCCCCCTTAAC 61.384 68.421 0.00 0.00 0.00 2.01
312 313 1.696674 CCCCTCCTCCCCCTTAACC 60.697 68.421 0.00 0.00 0.00 2.85
313 314 1.696674 CCCTCCTCCCCCTTAACCC 60.697 68.421 0.00 0.00 0.00 4.11
314 315 1.084084 CCTCCTCCCCCTTAACCCA 59.916 63.158 0.00 0.00 0.00 4.51
315 316 0.551624 CCTCCTCCCCCTTAACCCAA 60.552 60.000 0.00 0.00 0.00 4.12
316 317 1.608425 CTCCTCCCCCTTAACCCAAT 58.392 55.000 0.00 0.00 0.00 3.16
317 318 1.495148 CTCCTCCCCCTTAACCCAATC 59.505 57.143 0.00 0.00 0.00 2.67
318 319 1.203635 TCCTCCCCCTTAACCCAATCA 60.204 52.381 0.00 0.00 0.00 2.57
319 320 1.063942 CCTCCCCCTTAACCCAATCAC 60.064 57.143 0.00 0.00 0.00 3.06
320 321 1.638589 CTCCCCCTTAACCCAATCACA 59.361 52.381 0.00 0.00 0.00 3.58
321 322 2.042433 CTCCCCCTTAACCCAATCACAA 59.958 50.000 0.00 0.00 0.00 3.33
322 323 2.657459 TCCCCCTTAACCCAATCACAAT 59.343 45.455 0.00 0.00 0.00 2.71
323 324 3.031013 CCCCCTTAACCCAATCACAATC 58.969 50.000 0.00 0.00 0.00 2.67
324 325 3.309848 CCCCCTTAACCCAATCACAATCT 60.310 47.826 0.00 0.00 0.00 2.40
325 326 3.701040 CCCCTTAACCCAATCACAATCTG 59.299 47.826 0.00 0.00 0.00 2.90
326 327 3.131046 CCCTTAACCCAATCACAATCTGC 59.869 47.826 0.00 0.00 0.00 4.26
327 328 3.131046 CCTTAACCCAATCACAATCTGCC 59.869 47.826 0.00 0.00 0.00 4.85
328 329 2.307496 AACCCAATCACAATCTGCCA 57.693 45.000 0.00 0.00 0.00 4.92
329 330 2.307496 ACCCAATCACAATCTGCCAA 57.693 45.000 0.00 0.00 0.00 4.52
330 331 2.173519 ACCCAATCACAATCTGCCAAG 58.826 47.619 0.00 0.00 0.00 3.61
331 332 2.173519 CCCAATCACAATCTGCCAAGT 58.826 47.619 0.00 0.00 0.00 3.16
332 333 2.165030 CCCAATCACAATCTGCCAAGTC 59.835 50.000 0.00 0.00 0.00 3.01
333 334 2.821378 CCAATCACAATCTGCCAAGTCA 59.179 45.455 0.00 0.00 0.00 3.41
334 335 3.256383 CCAATCACAATCTGCCAAGTCAA 59.744 43.478 0.00 0.00 0.00 3.18
335 336 4.262121 CCAATCACAATCTGCCAAGTCAAA 60.262 41.667 0.00 0.00 0.00 2.69
336 337 5.291178 CAATCACAATCTGCCAAGTCAAAA 58.709 37.500 0.00 0.00 0.00 2.44
337 338 5.733620 ATCACAATCTGCCAAGTCAAAAT 57.266 34.783 0.00 0.00 0.00 1.82
338 339 4.873817 TCACAATCTGCCAAGTCAAAATG 58.126 39.130 0.00 0.00 0.00 2.32
339 340 4.583907 TCACAATCTGCCAAGTCAAAATGA 59.416 37.500 0.00 0.00 0.00 2.57
351 352 3.904571 GTCAAAATGACCCCGTAAAACC 58.095 45.455 0.00 0.00 41.37 3.27
352 353 2.892215 TCAAAATGACCCCGTAAAACCC 59.108 45.455 0.00 0.00 0.00 4.11
353 354 1.927487 AAATGACCCCGTAAAACCCC 58.073 50.000 0.00 0.00 0.00 4.95
354 355 1.078115 AATGACCCCGTAAAACCCCT 58.922 50.000 0.00 0.00 0.00 4.79
355 356 0.330267 ATGACCCCGTAAAACCCCTG 59.670 55.000 0.00 0.00 0.00 4.45
356 357 1.061324 TGACCCCGTAAAACCCCTGT 61.061 55.000 0.00 0.00 0.00 4.00
357 358 0.983467 GACCCCGTAAAACCCCTGTA 59.017 55.000 0.00 0.00 0.00 2.74
358 359 1.350684 GACCCCGTAAAACCCCTGTAA 59.649 52.381 0.00 0.00 0.00 2.41
359 360 1.994794 ACCCCGTAAAACCCCTGTAAT 59.005 47.619 0.00 0.00 0.00 1.89
360 361 2.291089 ACCCCGTAAAACCCCTGTAATG 60.291 50.000 0.00 0.00 0.00 1.90
361 362 2.371306 CCCGTAAAACCCCTGTAATGG 58.629 52.381 0.00 0.00 0.00 3.16
362 363 2.291089 CCCGTAAAACCCCTGTAATGGT 60.291 50.000 0.00 0.00 36.06 3.55
363 364 3.011818 CCGTAAAACCCCTGTAATGGTC 58.988 50.000 0.00 0.00 32.40 4.02
364 365 3.011818 CGTAAAACCCCTGTAATGGTCC 58.988 50.000 0.00 0.00 32.40 4.46
365 366 2.209690 AAAACCCCTGTAATGGTCCG 57.790 50.000 0.00 0.00 32.40 4.79
366 367 1.069775 AAACCCCTGTAATGGTCCGT 58.930 50.000 0.00 0.00 32.40 4.69
367 368 0.326927 AACCCCTGTAATGGTCCGTG 59.673 55.000 0.00 0.00 32.40 4.94
368 369 0.545787 ACCCCTGTAATGGTCCGTGA 60.546 55.000 0.00 0.00 0.00 4.35
369 370 0.178068 CCCCTGTAATGGTCCGTGAG 59.822 60.000 0.00 0.00 0.00 3.51
370 371 0.902531 CCCTGTAATGGTCCGTGAGT 59.097 55.000 0.00 0.00 0.00 3.41
371 372 1.405526 CCCTGTAATGGTCCGTGAGTG 60.406 57.143 0.00 0.00 0.00 3.51
372 373 1.275291 CCTGTAATGGTCCGTGAGTGT 59.725 52.381 0.00 0.00 0.00 3.55
373 374 2.494471 CCTGTAATGGTCCGTGAGTGTA 59.506 50.000 0.00 0.00 0.00 2.90
374 375 3.428999 CCTGTAATGGTCCGTGAGTGTAG 60.429 52.174 0.00 0.00 0.00 2.74
375 376 2.094390 TGTAATGGTCCGTGAGTGTAGC 60.094 50.000 0.00 0.00 0.00 3.58
376 377 0.973632 AATGGTCCGTGAGTGTAGCA 59.026 50.000 0.00 0.00 0.00 3.49
377 378 1.195115 ATGGTCCGTGAGTGTAGCAT 58.805 50.000 0.00 0.00 0.00 3.79
378 379 0.973632 TGGTCCGTGAGTGTAGCATT 59.026 50.000 0.00 0.00 0.00 3.56
379 380 1.337728 TGGTCCGTGAGTGTAGCATTG 60.338 52.381 0.00 0.00 0.00 2.82
380 381 0.721718 GTCCGTGAGTGTAGCATTGC 59.278 55.000 0.00 0.00 0.00 3.56
381 382 0.608130 TCCGTGAGTGTAGCATTGCT 59.392 50.000 16.63 16.63 43.41 3.91
382 383 1.002366 CCGTGAGTGTAGCATTGCTC 58.998 55.000 15.81 7.72 40.44 4.26
383 384 1.002366 CGTGAGTGTAGCATTGCTCC 58.998 55.000 15.81 3.99 40.44 4.70
384 385 1.404717 CGTGAGTGTAGCATTGCTCCT 60.405 52.381 15.81 9.63 40.44 3.69
385 386 2.159240 CGTGAGTGTAGCATTGCTCCTA 60.159 50.000 15.81 0.00 40.44 2.94
386 387 3.676049 CGTGAGTGTAGCATTGCTCCTAA 60.676 47.826 15.81 0.20 40.44 2.69
387 388 4.253685 GTGAGTGTAGCATTGCTCCTAAA 58.746 43.478 15.81 0.00 40.44 1.85
388 389 4.695455 GTGAGTGTAGCATTGCTCCTAAAA 59.305 41.667 15.81 0.00 40.44 1.52
389 390 5.355350 GTGAGTGTAGCATTGCTCCTAAAAT 59.645 40.000 15.81 0.00 40.44 1.82
390 391 5.355071 TGAGTGTAGCATTGCTCCTAAAATG 59.645 40.000 15.81 0.00 40.44 2.32
396 397 4.843220 CATTGCTCCTAAAATGCTAGGG 57.157 45.455 0.00 0.00 39.26 3.53
397 398 4.210331 CATTGCTCCTAAAATGCTAGGGT 58.790 43.478 0.00 0.00 39.26 4.34
398 399 5.376625 CATTGCTCCTAAAATGCTAGGGTA 58.623 41.667 0.00 0.00 39.26 3.69
399 400 5.444744 TTGCTCCTAAAATGCTAGGGTAA 57.555 39.130 0.00 0.00 39.26 2.85
400 401 4.777463 TGCTCCTAAAATGCTAGGGTAAC 58.223 43.478 0.00 0.00 39.26 2.50
401 402 4.226394 TGCTCCTAAAATGCTAGGGTAACA 59.774 41.667 0.00 0.00 39.26 2.41
402 403 5.190677 GCTCCTAAAATGCTAGGGTAACAA 58.809 41.667 0.00 0.00 39.26 2.83
403 404 5.650703 GCTCCTAAAATGCTAGGGTAACAAA 59.349 40.000 0.00 0.00 39.26 2.83
404 405 6.183360 GCTCCTAAAATGCTAGGGTAACAAAG 60.183 42.308 0.00 0.00 39.26 2.77
405 406 5.650703 TCCTAAAATGCTAGGGTAACAAAGC 59.349 40.000 0.00 0.00 43.89 3.51
406 407 4.801330 AAAATGCTAGGGTAACAAAGCC 57.199 40.909 1.55 0.00 46.88 4.35
411 412 4.843624 GGGTAACAAAGCCTGCCT 57.156 55.556 0.00 0.00 42.89 4.75
412 413 2.267045 GGGTAACAAAGCCTGCCTG 58.733 57.895 0.00 0.00 42.89 4.85
413 414 0.251165 GGGTAACAAAGCCTGCCTGA 60.251 55.000 0.00 0.00 42.89 3.86
414 415 1.168714 GGTAACAAAGCCTGCCTGAG 58.831 55.000 0.00 0.00 0.00 3.35
415 416 1.168714 GTAACAAAGCCTGCCTGAGG 58.831 55.000 0.00 0.00 46.13 3.86
431 432 4.847367 GGCCTGGCCCATTCCTGG 62.847 72.222 27.77 1.86 44.06 4.45
439 440 3.727258 CCATTCCTGGGTCCGCCA 61.727 66.667 0.00 0.00 39.04 5.69
440 441 2.438434 CATTCCTGGGTCCGCCAC 60.438 66.667 0.00 0.00 36.17 5.01
441 442 2.610859 ATTCCTGGGTCCGCCACT 60.611 61.111 0.00 0.00 36.17 4.00
442 443 2.670148 ATTCCTGGGTCCGCCACTC 61.670 63.158 0.00 0.00 36.17 3.51
443 444 4.631740 TCCTGGGTCCGCCACTCA 62.632 66.667 0.00 0.00 36.17 3.41
444 445 3.402681 CCTGGGTCCGCCACTCAT 61.403 66.667 0.00 0.00 33.79 2.90
445 446 2.063979 CCTGGGTCCGCCACTCATA 61.064 63.158 0.00 0.00 33.79 2.15
446 447 1.443407 CTGGGTCCGCCACTCATAG 59.557 63.158 0.00 0.00 33.79 2.23
447 448 1.305802 TGGGTCCGCCACTCATAGT 60.306 57.895 0.00 0.00 36.17 2.12
448 449 1.144057 GGGTCCGCCACTCATAGTG 59.856 63.158 0.00 0.00 45.53 2.74
466 467 8.231692 TCATAGTGAGAAAGAAGAGGACATAG 57.768 38.462 0.00 0.00 0.00 2.23
554 555 1.132834 GTGGAACGGTTGGAAAAACGT 59.867 47.619 0.00 0.00 42.30 3.99
566 567 5.548706 TGGAAAAACGTCAATTATACCCG 57.451 39.130 0.00 0.00 0.00 5.28
580 581 2.457813 TACCCGGTGGAGCTATGTAA 57.542 50.000 0.00 0.00 34.81 2.41
591 592 5.927115 GTGGAGCTATGTAACCTAGCATTAC 59.073 44.000 10.51 7.76 43.26 1.89
611 612 2.163815 ACTGCTCGTAAGTAAGTCGCAT 59.836 45.455 0.00 0.00 39.48 4.73
613 614 4.142534 ACTGCTCGTAAGTAAGTCGCATTA 60.143 41.667 0.00 0.00 39.48 1.90
741 761 2.482721 GCCTAGCTACGTTTCAGCAAAA 59.517 45.455 11.19 0.00 41.66 2.44
964 1336 4.969196 AGCACCTCGCCACACACG 62.969 66.667 0.00 0.00 44.04 4.49
1498 1877 7.611770 TCAGGTACCATATATACTTGACATGC 58.388 38.462 15.94 0.00 34.70 4.06
1545 1989 6.493449 TTTGTATTCAATTGATCTCACGCA 57.507 33.333 9.40 0.00 33.32 5.24
1581 2035 5.118203 GCAGTATTACAAGTTCGAGTTCGTT 59.882 40.000 1.07 0.00 40.80 3.85
1810 2264 0.318360 GGCAAACCAAGGTGCGTAAC 60.318 55.000 0.00 0.00 41.85 2.50
1870 2331 8.650490 ACATGGTTTGAACAAAAATTCTCCTAT 58.350 29.630 0.00 0.00 31.33 2.57
1944 2412 8.016229 CAGATAAGCTATCGTACTCGTGTAAAT 58.984 37.037 0.00 0.00 40.12 1.40
1952 2420 3.002732 CGTACTCGTGTAAATGCGTGTAC 60.003 47.826 14.93 14.93 45.94 2.90
1992 2460 8.246871 AGAAAAAGAATATGCTAAGCAAGTTCC 58.753 33.333 0.00 0.00 43.62 3.62
2148 3159 4.503714 ACTCTGTTCCAGAAAAGGTCAA 57.496 40.909 0.00 0.00 40.18 3.18
2163 3174 1.726853 GTCAATCTTGTCCTGACCCG 58.273 55.000 0.00 0.00 34.63 5.28
2182 3193 1.609932 GTTGCACACTTCATCATGCG 58.390 50.000 0.00 0.00 41.07 4.73
2185 3196 1.430632 CACACTTCATCATGCGCCC 59.569 57.895 4.18 0.00 0.00 6.13
2190 3464 1.949525 ACTTCATCATGCGCCCATTAC 59.050 47.619 4.18 0.00 0.00 1.89
2192 3466 2.275134 TCATCATGCGCCCATTACAT 57.725 45.000 4.18 0.00 0.00 2.29
2195 3471 3.384146 TCATCATGCGCCCATTACATTTT 59.616 39.130 4.18 0.00 0.00 1.82
2312 3591 4.637483 TGCTAATGCATTGGCTCTTAAC 57.363 40.909 37.17 15.77 45.31 2.01
2324 3603 7.567571 CATTGGCTCTTAACACGTTATCATAG 58.432 38.462 0.00 0.00 0.00 2.23
2385 3665 6.183360 TGCATTGTCTGTTAAATGTTGTGTCT 60.183 34.615 0.00 0.00 36.39 3.41
2436 3716 5.529060 GGAACCATGTTTACATCTCCATCTC 59.471 44.000 8.98 0.00 33.61 2.75
2439 3719 4.509230 CCATGTTTACATCTCCATCTCGTG 59.491 45.833 0.00 0.00 33.61 4.35
2448 3728 1.746615 CCATCTCGTGGCCTGGTTG 60.747 63.158 3.32 0.00 42.12 3.77
2461 3741 1.271597 CCTGGTTGTGGAGAGAAAGGG 60.272 57.143 0.00 0.00 0.00 3.95
2465 3745 2.372172 GGTTGTGGAGAGAAAGGGAAGA 59.628 50.000 0.00 0.00 0.00 2.87
2475 3755 7.448469 TGGAGAGAAAGGGAAGAGTAAAAATTG 59.552 37.037 0.00 0.00 0.00 2.32
2480 3760 6.918067 AAGGGAAGAGTAAAAATTGGGAAG 57.082 37.500 0.00 0.00 0.00 3.46
2497 3777 4.080919 TGGGAAGATAAGTCACACCAGATG 60.081 45.833 0.00 0.00 0.00 2.90
2502 3782 5.268387 AGATAAGTCACACCAGATGAGAGT 58.732 41.667 0.00 0.00 33.41 3.24
2513 3793 9.035607 CACACCAGATGAGAGTATTAATTACAC 57.964 37.037 0.00 0.00 32.87 2.90
2551 3831 9.924650 ATAAGTTAAGAGTTGTTTCGTCACTAT 57.075 29.630 0.00 0.00 0.00 2.12
2554 3834 9.189723 AGTTAAGAGTTGTTTCGTCACTATTAC 57.810 33.333 0.00 0.00 0.00 1.89
2556 3836 7.870588 AAGAGTTGTTTCGTCACTATTACTC 57.129 36.000 0.00 0.00 0.00 2.59
2557 3837 6.388278 AGAGTTGTTTCGTCACTATTACTCC 58.612 40.000 0.00 0.00 32.09 3.85
2558 3838 5.476614 AGTTGTTTCGTCACTATTACTCCC 58.523 41.667 0.00 0.00 0.00 4.30
2559 3839 5.245526 AGTTGTTTCGTCACTATTACTCCCT 59.754 40.000 0.00 0.00 0.00 4.20
2561 3841 5.014858 TGTTTCGTCACTATTACTCCCTCT 58.985 41.667 0.00 0.00 0.00 3.69
2563 3843 6.832384 TGTTTCGTCACTATTACTCCCTCTAT 59.168 38.462 0.00 0.00 0.00 1.98
2564 3844 7.994911 TGTTTCGTCACTATTACTCCCTCTATA 59.005 37.037 0.00 0.00 0.00 1.31
2565 3845 7.976135 TTCGTCACTATTACTCCCTCTATAC 57.024 40.000 0.00 0.00 0.00 1.47
2570 3850 9.804977 GTCACTATTACTCCCTCTATACCTAAA 57.195 37.037 0.00 0.00 0.00 1.85
2579 3859 9.629878 ACTCCCTCTATACCTAAATATATGTCG 57.370 37.037 0.00 0.00 0.00 4.35
2589 3869 7.376615 ACCTAAATATATGTCGTTGGAGTAGC 58.623 38.462 0.00 0.00 0.00 3.58
2590 3870 7.232941 ACCTAAATATATGTCGTTGGAGTAGCT 59.767 37.037 0.00 0.00 0.00 3.32
2591 3871 7.542477 CCTAAATATATGTCGTTGGAGTAGCTG 59.458 40.741 0.00 0.00 0.00 4.24
2592 3872 2.579207 TATGTCGTTGGAGTAGCTGC 57.421 50.000 0.00 0.00 0.00 5.25
2593 3873 0.898320 ATGTCGTTGGAGTAGCTGCT 59.102 50.000 3.08 3.08 0.00 4.24
2594 3874 0.243907 TGTCGTTGGAGTAGCTGCTC 59.756 55.000 22.31 22.31 34.89 4.26
2609 3889 1.524355 CTGCTCCAGCGACATATTTCG 59.476 52.381 6.91 6.91 45.83 3.46
2610 3890 0.861837 GCTCCAGCGACATATTTCGG 59.138 55.000 12.84 0.00 39.50 4.30
2611 3891 0.861837 CTCCAGCGACATATTTCGGC 59.138 55.000 12.84 5.67 39.50 5.54
2612 3892 0.176910 TCCAGCGACATATTTCGGCA 59.823 50.000 12.84 0.00 39.50 5.69
2613 3893 0.304705 CCAGCGACATATTTCGGCAC 59.695 55.000 12.84 0.00 39.50 5.01
2614 3894 1.006086 CAGCGACATATTTCGGCACA 58.994 50.000 12.84 0.00 39.50 4.57
2615 3895 1.004610 CAGCGACATATTTCGGCACAG 60.005 52.381 12.84 0.00 39.50 3.66
2616 3896 1.134818 AGCGACATATTTCGGCACAGA 60.135 47.619 12.84 0.00 39.50 3.41
2617 3897 1.258982 GCGACATATTTCGGCACAGAG 59.741 52.381 12.84 0.00 39.50 3.35
2618 3898 1.258982 CGACATATTTCGGCACAGAGC 59.741 52.381 3.28 0.00 44.65 4.09
2644 3924 4.268359 CCCCCTTCTCTCTTCTTTGAATG 58.732 47.826 0.00 0.00 0.00 2.67
2710 3990 2.039084 ACAAACATCAGGACTGTCCTCC 59.961 50.000 26.11 0.58 45.66 4.30
2738 4019 4.448210 TGACTTTTCAACGTTCCTAGCTT 58.552 39.130 0.00 0.00 0.00 3.74
2816 4298 6.156519 GCGTCACTCAATCATATATGTACCA 58.843 40.000 12.42 0.00 0.00 3.25
2945 4434 1.070758 CTAGTTGCCATGGCGTCCTAT 59.929 52.381 30.87 15.68 45.51 2.57
3005 4729 9.665719 TCAAAACAATAGTATAATCAGTGCTGA 57.334 29.630 4.23 4.23 44.59 4.26
3165 5394 0.785979 GATTGCGTTTGCTTGCTTGG 59.214 50.000 0.00 0.00 43.34 3.61
3281 5510 1.174783 TCTACTCCACACGCTTCTCC 58.825 55.000 0.00 0.00 0.00 3.71
3401 5641 1.662133 ACGACACGCATGCACGTAA 60.662 52.632 19.57 0.00 46.34 3.18
3498 5748 1.734117 TGTGCATGCTCGAGACGTG 60.734 57.895 18.75 18.77 0.00 4.49
3518 5780 1.818674 GCCCCGATCAACAAGAACATT 59.181 47.619 0.00 0.00 0.00 2.71
3535 5797 5.643777 AGAACATTAATTACTGCACGAAGCT 59.356 36.000 2.90 0.00 45.94 3.74
3581 5852 3.063452 TGACAGCAACGTCTTGTTCTTTC 59.937 43.478 0.00 0.00 39.29 2.62
4050 6344 2.124570 GGCAGTGGCACGATCCAT 60.125 61.111 12.58 0.00 43.71 3.41
4113 6407 1.522806 GTCCAACCTGCACACGTCA 60.523 57.895 0.00 0.00 0.00 4.35
4396 6690 6.197364 AGTAACTCATACTGCAGTGTACTC 57.803 41.667 29.57 11.48 43.33 2.59
4397 6691 3.766676 ACTCATACTGCAGTGTACTCG 57.233 47.619 29.57 10.80 0.00 4.18
4398 6692 3.082548 ACTCATACTGCAGTGTACTCGT 58.917 45.455 29.57 14.71 0.00 4.18
4399 6693 4.259356 ACTCATACTGCAGTGTACTCGTA 58.741 43.478 29.57 6.90 0.00 3.43
4409 6703 6.213677 TGCAGTGTACTCGTATAATTCATCC 58.786 40.000 0.00 0.00 0.00 3.51
4500 6797 1.816224 GTTTTTCTGGGATGCGGCTAA 59.184 47.619 0.00 0.00 0.00 3.09
4512 6809 1.409064 TGCGGCTAATTCTCAGTCGAT 59.591 47.619 4.94 0.00 43.67 3.59
4544 6841 2.738846 CCAAGTCTCGGTCAAATGACAG 59.261 50.000 14.93 11.11 46.47 3.51
4555 6862 8.795786 TCGGTCAAATGACAGAAAAATAAAAG 57.204 30.769 12.89 0.00 44.09 2.27
4680 6993 6.268387 ACATCATCCAGACCAAAGAAAACAAT 59.732 34.615 0.00 0.00 0.00 2.71
4692 7007 7.990886 ACCAAAGAAAACAATGAGTGTCTACTA 59.009 33.333 0.00 0.00 40.60 1.82
4693 7008 8.499162 CCAAAGAAAACAATGAGTGTCTACTAG 58.501 37.037 0.00 0.00 40.60 2.57
4694 7009 7.659652 AAGAAAACAATGAGTGTCTACTAGC 57.340 36.000 0.00 0.00 40.60 3.42
4695 7010 6.998802 AGAAAACAATGAGTGTCTACTAGCT 58.001 36.000 0.00 0.00 40.60 3.32
4696 7011 8.123639 AGAAAACAATGAGTGTCTACTAGCTA 57.876 34.615 0.00 0.00 40.60 3.32
4697 7012 8.247562 AGAAAACAATGAGTGTCTACTAGCTAG 58.752 37.037 19.44 19.44 40.60 3.42
4701 7016 6.317642 ACAATGAGTGTCTACTAGCTAGTCAG 59.682 42.308 29.28 22.06 34.38 3.51
4728 7043 9.492973 AAGTTAGAGCACATTTTAATGCAAATT 57.507 25.926 0.00 0.00 44.59 1.82
4856 7171 6.155221 TGCTTCTGATATTCCAGTGTACTTCT 59.845 38.462 0.00 0.00 35.71 2.85
4858 7173 6.716934 TCTGATATTCCAGTGTACTTCTCC 57.283 41.667 0.00 0.00 35.71 3.71
4864 7179 1.002087 CCAGTGTACTTCTCCCACCAC 59.998 57.143 0.00 0.00 0.00 4.16
4893 7208 6.382869 ACATTTTCAACTGTCTCTTTCCAG 57.617 37.500 0.00 0.00 34.82 3.86
4918 7233 7.819900 AGAATACAGAGTCAAACCACATCTTAC 59.180 37.037 0.00 0.00 0.00 2.34
4925 7240 9.601217 AGAGTCAAACCACATCTTACATTATAC 57.399 33.333 0.00 0.00 0.00 1.47
4935 7250 9.559732 CACATCTTACATTATACCAATCTGGAA 57.440 33.333 0.00 0.00 40.96 3.53
4959 7274 1.081175 GCAAAAGGCGCCTTCAGAC 60.081 57.895 40.13 25.37 34.84 3.51
4973 7288 0.392706 TCAGACGCATCCACAACACT 59.607 50.000 0.00 0.00 0.00 3.55
4979 7294 1.606480 CGCATCCACAACACTGTCTCT 60.606 52.381 0.00 0.00 31.64 3.10
4992 7307 3.931468 CACTGTCTCTTTGCAGGATACAG 59.069 47.826 22.95 22.95 40.97 2.74
5009 7324 6.600822 AGGATACAGATTCAAACCACATCTTG 59.399 38.462 0.00 0.00 41.41 3.02
5017 7332 9.139734 AGATTCAAACCACATCTTGCATTATAT 57.860 29.630 0.00 0.00 0.00 0.86
5072 7387 1.947678 GCATCCACAACAGGGTCTGAG 60.948 57.143 1.59 0.00 35.18 3.35
5089 7404 2.438763 CTGAGATTCCATCAGAAGCCCT 59.561 50.000 0.00 0.00 45.80 5.19
5129 7445 5.009610 TGCTTTGTCCAACTTCTCAAATACC 59.990 40.000 0.00 0.00 31.08 2.73
5168 7484 6.054295 AGAACATGTTTCATAGAGATCCAGC 58.946 40.000 13.36 0.00 0.00 4.85
5203 7519 9.705290 TTAAAAGCAATGGAGTTCCTAAAATTC 57.295 29.630 0.00 0.00 36.82 2.17
5204 7520 6.916360 AAGCAATGGAGTTCCTAAAATTCA 57.084 33.333 0.00 0.00 36.82 2.57
5208 7524 8.377799 AGCAATGGAGTTCCTAAAATTCAATTT 58.622 29.630 0.00 0.00 36.82 1.82
5217 7533 6.028780 TCCTAAAATTCAATTTCCCCCACAT 58.971 36.000 0.00 0.00 0.00 3.21
5225 7541 2.692709 TTTCCCCCACATGACAACAT 57.307 45.000 0.00 0.00 37.19 2.71
5265 7581 9.793259 AAGATGTAAGTATCTTCTTCCACAAAA 57.207 29.630 0.00 0.00 42.22 2.44
5286 7602 4.470334 ACCAGTGTTTTGCAACTGATTT 57.530 36.364 16.17 0.00 33.58 2.17
5313 7629 9.573133 AAAGTTATCAACAGAAACTTGAAACAG 57.427 29.630 0.85 0.00 41.36 3.16
5338 7659 2.334977 TCAACCTCAAACCAGCCTAGA 58.665 47.619 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.339466 GGTCCACTTCAAGGTTATTTCATATGT 59.661 37.037 1.90 0.00 0.00 2.29
1 2 7.201821 GGGTCCACTTCAAGGTTATTTCATATG 60.202 40.741 0.00 0.00 0.00 1.78
2 3 6.833933 GGGTCCACTTCAAGGTTATTTCATAT 59.166 38.462 0.00 0.00 0.00 1.78
4 5 5.016831 GGGTCCACTTCAAGGTTATTTCAT 58.983 41.667 0.00 0.00 0.00 2.57
8 9 4.675063 ATGGGTCCACTTCAAGGTTATT 57.325 40.909 0.00 0.00 0.00 1.40
9 10 5.994416 ATATGGGTCCACTTCAAGGTTAT 57.006 39.130 0.00 0.00 0.00 1.89
10 11 5.789574 AATATGGGTCCACTTCAAGGTTA 57.210 39.130 0.00 0.00 0.00 2.85
11 12 4.675063 AATATGGGTCCACTTCAAGGTT 57.325 40.909 0.00 0.00 0.00 3.50
12 13 4.675063 AAATATGGGTCCACTTCAAGGT 57.325 40.909 0.00 0.00 0.00 3.50
13 14 6.423182 TCTTAAATATGGGTCCACTTCAAGG 58.577 40.000 0.00 0.00 0.00 3.61
14 15 7.775093 TGATCTTAAATATGGGTCCACTTCAAG 59.225 37.037 0.00 0.00 0.00 3.02
15 16 7.638444 TGATCTTAAATATGGGTCCACTTCAA 58.362 34.615 0.00 0.00 0.00 2.69
16 17 7.206789 TGATCTTAAATATGGGTCCACTTCA 57.793 36.000 0.00 0.00 0.00 3.02
17 18 9.965902 ATATGATCTTAAATATGGGTCCACTTC 57.034 33.333 0.00 0.00 0.00 3.01
18 19 9.745018 CATATGATCTTAAATATGGGTCCACTT 57.255 33.333 0.00 0.00 34.48 3.16
19 20 9.116080 TCATATGATCTTAAATATGGGTCCACT 57.884 33.333 0.00 0.00 37.36 4.00
20 21 9.388506 CTCATATGATCTTAAATATGGGTCCAC 57.611 37.037 5.72 0.00 37.36 4.02
21 22 9.337714 TCTCATATGATCTTAAATATGGGTCCA 57.662 33.333 5.72 0.00 38.10 4.02
22 23 9.829507 CTCTCATATGATCTTAAATATGGGTCC 57.170 37.037 5.72 0.00 38.10 4.46
23 24 9.829507 CCTCTCATATGATCTTAAATATGGGTC 57.170 37.037 5.72 0.00 38.10 4.46
24 25 8.270744 GCCTCTCATATGATCTTAAATATGGGT 58.729 37.037 5.72 0.00 38.10 4.51
25 26 8.270030 TGCCTCTCATATGATCTTAAATATGGG 58.730 37.037 5.72 7.34 38.21 4.00
26 27 9.676861 TTGCCTCTCATATGATCTTAAATATGG 57.323 33.333 5.72 0.00 37.36 2.74
71 72 7.719778 TCTGTCGTACATTCGTATGTAGTAT 57.280 36.000 14.34 0.00 45.42 2.12
72 73 7.570161 CATCTGTCGTACATTCGTATGTAGTA 58.430 38.462 14.34 4.16 45.42 1.82
73 74 6.427974 CATCTGTCGTACATTCGTATGTAGT 58.572 40.000 14.34 0.00 45.42 2.73
74 75 5.339875 GCATCTGTCGTACATTCGTATGTAG 59.660 44.000 14.34 9.35 45.42 2.74
75 76 5.209977 GCATCTGTCGTACATTCGTATGTA 58.790 41.667 10.46 10.46 43.12 2.29
76 77 4.042398 GCATCTGTCGTACATTCGTATGT 58.958 43.478 12.50 12.50 46.49 2.29
77 78 3.117994 CGCATCTGTCGTACATTCGTATG 59.882 47.826 0.00 0.00 36.16 2.39
92 93 2.444624 CCGTCGTTGTCCGCATCTG 61.445 63.158 0.00 0.00 36.19 2.90
93 94 1.945354 ATCCGTCGTTGTCCGCATCT 61.945 55.000 0.00 0.00 36.19 2.90
97 98 1.683790 CTGAATCCGTCGTTGTCCGC 61.684 60.000 0.00 0.00 36.19 5.54
101 102 1.736645 CGCCTGAATCCGTCGTTGT 60.737 57.895 0.00 0.00 0.00 3.32
104 105 4.814294 GGCGCCTGAATCCGTCGT 62.814 66.667 22.15 0.00 0.00 4.34
105 106 4.812476 TGGCGCCTGAATCCGTCG 62.812 66.667 29.70 0.00 0.00 5.12
106 107 2.892425 CTGGCGCCTGAATCCGTC 60.892 66.667 29.70 0.00 0.00 4.79
107 108 4.473520 CCTGGCGCCTGAATCCGT 62.474 66.667 32.43 0.00 0.00 4.69
109 110 4.802051 TGCCTGGCGCCTGAATCC 62.802 66.667 32.43 17.74 36.24 3.01
110 111 3.207669 CTGCCTGGCGCCTGAATC 61.208 66.667 32.43 20.47 36.24 2.52
146 147 0.532115 AATTGAATTGGGCCTCACGC 59.468 50.000 4.53 0.00 0.00 5.34
147 148 1.545582 ACAATTGAATTGGGCCTCACG 59.454 47.619 20.69 0.00 44.42 4.35
148 149 3.006752 TCAACAATTGAATTGGGCCTCAC 59.993 43.478 20.69 0.00 44.42 3.51
149 150 3.006752 GTCAACAATTGAATTGGGCCTCA 59.993 43.478 20.69 0.00 44.42 3.86
150 151 3.259123 AGTCAACAATTGAATTGGGCCTC 59.741 43.478 20.69 8.12 44.42 4.70
151 152 3.007182 CAGTCAACAATTGAATTGGGCCT 59.993 43.478 20.69 6.27 44.42 5.19
152 153 3.328505 CAGTCAACAATTGAATTGGGCC 58.671 45.455 20.69 0.00 44.42 5.80
153 154 2.738314 GCAGTCAACAATTGAATTGGGC 59.262 45.455 20.69 6.74 44.42 5.36
154 155 3.992643 TGCAGTCAACAATTGAATTGGG 58.007 40.909 20.69 12.82 44.42 4.12
167 168 3.187637 GCTACGGTAAATGTTGCAGTCAA 59.812 43.478 0.00 0.00 37.87 3.18
168 169 2.739913 GCTACGGTAAATGTTGCAGTCA 59.260 45.455 0.00 0.00 37.87 3.41
169 170 3.000727 AGCTACGGTAAATGTTGCAGTC 58.999 45.455 2.76 0.00 39.93 3.51
170 171 3.053831 AGCTACGGTAAATGTTGCAGT 57.946 42.857 2.76 0.00 39.93 4.40
171 172 7.201444 GCTATATAGCTACGGTAAATGTTGCAG 60.201 40.741 24.63 0.00 45.62 4.41
172 173 6.588756 GCTATATAGCTACGGTAAATGTTGCA 59.411 38.462 24.63 0.00 45.62 4.08
173 174 6.237490 CGCTATATAGCTACGGTAAATGTTGC 60.237 42.308 27.71 1.60 46.85 4.17
174 175 6.237490 GCGCTATATAGCTACGGTAAATGTTG 60.237 42.308 27.71 11.36 46.85 3.33
175 176 5.803967 GCGCTATATAGCTACGGTAAATGTT 59.196 40.000 27.71 0.00 46.85 2.71
176 177 5.125097 AGCGCTATATAGCTACGGTAAATGT 59.875 40.000 27.71 3.80 46.85 2.71
177 178 5.579718 AGCGCTATATAGCTACGGTAAATG 58.420 41.667 27.71 12.35 46.85 2.32
178 179 5.503683 CGAGCGCTATATAGCTACGGTAAAT 60.504 44.000 27.71 7.18 46.85 1.40
179 180 4.201753 CGAGCGCTATATAGCTACGGTAAA 60.202 45.833 27.71 0.00 46.85 2.01
180 181 3.308053 CGAGCGCTATATAGCTACGGTAA 59.692 47.826 27.71 0.00 46.85 2.85
181 182 2.862536 CGAGCGCTATATAGCTACGGTA 59.137 50.000 27.71 0.00 46.85 4.02
182 183 1.664659 CGAGCGCTATATAGCTACGGT 59.335 52.381 27.71 19.32 46.85 4.83
183 184 1.931841 TCGAGCGCTATATAGCTACGG 59.068 52.381 27.71 15.78 46.85 4.02
184 185 3.653256 TTCGAGCGCTATATAGCTACG 57.347 47.619 27.71 26.03 46.85 3.51
185 186 5.275974 GCAATTTCGAGCGCTATATAGCTAC 60.276 44.000 27.71 20.50 46.85 3.58
186 187 4.798907 GCAATTTCGAGCGCTATATAGCTA 59.201 41.667 27.71 0.00 46.85 3.32
187 188 3.614616 GCAATTTCGAGCGCTATATAGCT 59.385 43.478 27.71 13.72 46.85 3.32
188 189 3.614616 AGCAATTTCGAGCGCTATATAGC 59.385 43.478 22.56 22.56 45.62 2.97
189 190 6.871044 TTAGCAATTTCGAGCGCTATATAG 57.129 37.500 11.50 5.30 36.87 1.31
190 191 6.183359 CGTTTAGCAATTTCGAGCGCTATATA 60.183 38.462 11.50 0.00 36.87 0.86
191 192 5.388475 CGTTTAGCAATTTCGAGCGCTATAT 60.388 40.000 11.50 0.00 36.87 0.86
192 193 4.085261 CGTTTAGCAATTTCGAGCGCTATA 60.085 41.667 11.50 0.00 36.87 1.31
193 194 3.302480 CGTTTAGCAATTTCGAGCGCTAT 60.302 43.478 11.50 0.00 36.87 2.97
194 195 2.028763 CGTTTAGCAATTTCGAGCGCTA 59.971 45.455 11.50 0.00 35.93 4.26
195 196 1.201921 CGTTTAGCAATTTCGAGCGCT 60.202 47.619 11.27 11.27 38.51 5.92
196 197 1.171876 CGTTTAGCAATTTCGAGCGC 58.828 50.000 0.00 0.00 35.48 5.92
209 210 2.737783 TGTAATTGGTCCGTGCGTTTAG 59.262 45.455 0.00 0.00 0.00 1.85
210 211 2.737783 CTGTAATTGGTCCGTGCGTTTA 59.262 45.455 0.00 0.00 0.00 2.01
211 212 1.533731 CTGTAATTGGTCCGTGCGTTT 59.466 47.619 0.00 0.00 0.00 3.60
212 213 1.153353 CTGTAATTGGTCCGTGCGTT 58.847 50.000 0.00 0.00 0.00 4.84
213 214 0.672401 CCTGTAATTGGTCCGTGCGT 60.672 55.000 0.00 0.00 0.00 5.24
214 215 0.390603 TCCTGTAATTGGTCCGTGCG 60.391 55.000 0.00 0.00 0.00 5.34
215 216 1.670811 CATCCTGTAATTGGTCCGTGC 59.329 52.381 0.00 0.00 0.00 5.34
216 217 3.260475 TCATCCTGTAATTGGTCCGTG 57.740 47.619 0.00 0.00 0.00 4.94
217 218 3.454447 TGATCATCCTGTAATTGGTCCGT 59.546 43.478 0.00 0.00 0.00 4.69
218 219 3.809832 GTGATCATCCTGTAATTGGTCCG 59.190 47.826 0.00 0.00 0.00 4.79
219 220 3.809832 CGTGATCATCCTGTAATTGGTCC 59.190 47.826 0.00 0.00 0.00 4.46
220 221 3.809832 CCGTGATCATCCTGTAATTGGTC 59.190 47.826 0.00 0.00 0.00 4.02
221 222 3.433598 CCCGTGATCATCCTGTAATTGGT 60.434 47.826 0.00 0.00 0.00 3.67
222 223 3.141398 CCCGTGATCATCCTGTAATTGG 58.859 50.000 0.00 0.00 0.00 3.16
223 224 2.549754 GCCCGTGATCATCCTGTAATTG 59.450 50.000 0.00 0.00 0.00 2.32
224 225 2.487265 GGCCCGTGATCATCCTGTAATT 60.487 50.000 0.00 0.00 0.00 1.40
225 226 1.072331 GGCCCGTGATCATCCTGTAAT 59.928 52.381 0.00 0.00 0.00 1.89
226 227 0.468226 GGCCCGTGATCATCCTGTAA 59.532 55.000 0.00 0.00 0.00 2.41
227 228 1.407656 GGGCCCGTGATCATCCTGTA 61.408 60.000 5.69 0.00 0.00 2.74
228 229 2.746375 GGGCCCGTGATCATCCTGT 61.746 63.158 5.69 0.00 0.00 4.00
229 230 2.111878 GGGCCCGTGATCATCCTG 59.888 66.667 5.69 0.00 0.00 3.86
230 231 3.171388 GGGGCCCGTGATCATCCT 61.171 66.667 17.79 0.00 0.00 3.24
231 232 2.682582 GAAGGGGCCCGTGATCATCC 62.683 65.000 19.90 0.00 0.00 3.51
232 233 1.227973 GAAGGGGCCCGTGATCATC 60.228 63.158 19.90 7.62 0.00 2.92
233 234 2.757124 GGAAGGGGCCCGTGATCAT 61.757 63.158 19.90 0.35 0.00 2.45
234 235 3.407967 GGAAGGGGCCCGTGATCA 61.408 66.667 19.90 0.00 0.00 2.92
235 236 3.090532 AGGAAGGGGCCCGTGATC 61.091 66.667 19.90 12.87 0.00 2.92
236 237 2.252012 TAGAGGAAGGGGCCCGTGAT 62.252 60.000 19.90 2.20 0.00 3.06
237 238 2.465010 TTAGAGGAAGGGGCCCGTGA 62.465 60.000 19.90 0.00 0.00 4.35
238 239 1.345715 ATTAGAGGAAGGGGCCCGTG 61.346 60.000 19.90 0.00 0.00 4.94
239 240 1.004361 ATTAGAGGAAGGGGCCCGT 59.996 57.895 18.95 15.68 0.00 5.28
240 241 1.755384 GATTAGAGGAAGGGGCCCG 59.245 63.158 18.95 0.00 0.00 6.13
241 242 0.402126 AGGATTAGAGGAAGGGGCCC 60.402 60.000 17.12 17.12 0.00 5.80
242 243 1.060729 GAGGATTAGAGGAAGGGGCC 58.939 60.000 0.00 0.00 0.00 5.80
243 244 1.974957 GAGAGGATTAGAGGAAGGGGC 59.025 57.143 0.00 0.00 0.00 5.80
244 245 2.090494 TGGAGAGGATTAGAGGAAGGGG 60.090 54.545 0.00 0.00 0.00 4.79
245 246 2.969262 GTGGAGAGGATTAGAGGAAGGG 59.031 54.545 0.00 0.00 0.00 3.95
246 247 2.969262 GGTGGAGAGGATTAGAGGAAGG 59.031 54.545 0.00 0.00 0.00 3.46
247 248 2.969262 GGGTGGAGAGGATTAGAGGAAG 59.031 54.545 0.00 0.00 0.00 3.46
248 249 2.360423 GGGGTGGAGAGGATTAGAGGAA 60.360 54.545 0.00 0.00 0.00 3.36
249 250 1.220750 GGGGTGGAGAGGATTAGAGGA 59.779 57.143 0.00 0.00 0.00 3.71
250 251 1.221781 AGGGGTGGAGAGGATTAGAGG 59.778 57.143 0.00 0.00 0.00 3.69
251 252 2.604139 GAGGGGTGGAGAGGATTAGAG 58.396 57.143 0.00 0.00 0.00 2.43
252 253 1.220750 GGAGGGGTGGAGAGGATTAGA 59.779 57.143 0.00 0.00 0.00 2.10
253 254 1.221781 AGGAGGGGTGGAGAGGATTAG 59.778 57.143 0.00 0.00 0.00 1.73
254 255 1.330155 AGGAGGGGTGGAGAGGATTA 58.670 55.000 0.00 0.00 0.00 1.75
255 256 0.423544 AAGGAGGGGTGGAGAGGATT 59.576 55.000 0.00 0.00 0.00 3.01
256 257 0.327000 CAAGGAGGGGTGGAGAGGAT 60.327 60.000 0.00 0.00 0.00 3.24
257 258 1.081092 CAAGGAGGGGTGGAGAGGA 59.919 63.158 0.00 0.00 0.00 3.71
258 259 0.327000 ATCAAGGAGGGGTGGAGAGG 60.327 60.000 0.00 0.00 0.00 3.69
259 260 1.589414 AATCAAGGAGGGGTGGAGAG 58.411 55.000 0.00 0.00 0.00 3.20
260 261 2.059756 AAATCAAGGAGGGGTGGAGA 57.940 50.000 0.00 0.00 0.00 3.71
261 262 2.041620 TGAAAATCAAGGAGGGGTGGAG 59.958 50.000 0.00 0.00 0.00 3.86
262 263 2.041620 CTGAAAATCAAGGAGGGGTGGA 59.958 50.000 0.00 0.00 0.00 4.02
263 264 2.450476 CTGAAAATCAAGGAGGGGTGG 58.550 52.381 0.00 0.00 0.00 4.61
264 265 2.225117 ACCTGAAAATCAAGGAGGGGTG 60.225 50.000 0.00 0.00 0.00 4.61
265 266 2.073776 ACCTGAAAATCAAGGAGGGGT 58.926 47.619 0.00 0.00 0.00 4.95
266 267 2.450476 CACCTGAAAATCAAGGAGGGG 58.550 52.381 0.00 0.00 0.00 4.79
267 268 2.450476 CCACCTGAAAATCAAGGAGGG 58.550 52.381 0.00 0.00 29.16 4.30
268 269 2.225117 ACCCACCTGAAAATCAAGGAGG 60.225 50.000 0.00 0.00 30.97 4.30
269 270 3.160679 ACCCACCTGAAAATCAAGGAG 57.839 47.619 0.00 0.00 0.00 3.69
270 271 3.230134 CAACCCACCTGAAAATCAAGGA 58.770 45.455 0.00 0.00 0.00 3.36
271 272 2.299867 CCAACCCACCTGAAAATCAAGG 59.700 50.000 0.00 0.00 0.00 3.61
272 273 2.299867 CCCAACCCACCTGAAAATCAAG 59.700 50.000 0.00 0.00 0.00 3.02
273 274 2.324541 CCCAACCCACCTGAAAATCAA 58.675 47.619 0.00 0.00 0.00 2.57
274 275 2.008242 CCCAACCCACCTGAAAATCA 57.992 50.000 0.00 0.00 0.00 2.57
275 276 0.608130 GCCCAACCCACCTGAAAATC 59.392 55.000 0.00 0.00 0.00 2.17
276 277 0.835971 GGCCCAACCCACCTGAAAAT 60.836 55.000 0.00 0.00 0.00 1.82
277 278 1.458588 GGCCCAACCCACCTGAAAA 60.459 57.895 0.00 0.00 0.00 2.29
278 279 2.200092 GGCCCAACCCACCTGAAA 59.800 61.111 0.00 0.00 0.00 2.69
292 293 3.670620 TTAAGGGGGAGGAGGGGCC 62.671 68.421 0.00 0.00 0.00 5.80
293 294 2.043941 TTAAGGGGGAGGAGGGGC 59.956 66.667 0.00 0.00 0.00 5.80
294 295 1.696674 GGTTAAGGGGGAGGAGGGG 60.697 68.421 0.00 0.00 0.00 4.79
295 296 1.696674 GGGTTAAGGGGGAGGAGGG 60.697 68.421 0.00 0.00 0.00 4.30
296 297 0.551624 TTGGGTTAAGGGGGAGGAGG 60.552 60.000 0.00 0.00 0.00 4.30
297 298 1.495148 GATTGGGTTAAGGGGGAGGAG 59.505 57.143 0.00 0.00 0.00 3.69
298 299 1.203635 TGATTGGGTTAAGGGGGAGGA 60.204 52.381 0.00 0.00 0.00 3.71
299 300 1.063942 GTGATTGGGTTAAGGGGGAGG 60.064 57.143 0.00 0.00 0.00 4.30
300 301 1.638589 TGTGATTGGGTTAAGGGGGAG 59.361 52.381 0.00 0.00 0.00 4.30
301 302 1.761711 TGTGATTGGGTTAAGGGGGA 58.238 50.000 0.00 0.00 0.00 4.81
302 303 2.614134 TTGTGATTGGGTTAAGGGGG 57.386 50.000 0.00 0.00 0.00 5.40
303 304 3.701040 CAGATTGTGATTGGGTTAAGGGG 59.299 47.826 0.00 0.00 0.00 4.79
304 305 3.131046 GCAGATTGTGATTGGGTTAAGGG 59.869 47.826 0.00 0.00 0.00 3.95
305 306 3.131046 GGCAGATTGTGATTGGGTTAAGG 59.869 47.826 0.00 0.00 0.00 2.69
306 307 3.763360 TGGCAGATTGTGATTGGGTTAAG 59.237 43.478 0.00 0.00 0.00 1.85
307 308 3.772387 TGGCAGATTGTGATTGGGTTAA 58.228 40.909 0.00 0.00 0.00 2.01
308 309 3.448093 TGGCAGATTGTGATTGGGTTA 57.552 42.857 0.00 0.00 0.00 2.85
309 310 2.307496 TGGCAGATTGTGATTGGGTT 57.693 45.000 0.00 0.00 0.00 4.11
310 311 2.173519 CTTGGCAGATTGTGATTGGGT 58.826 47.619 0.00 0.00 0.00 4.51
311 312 2.165030 GACTTGGCAGATTGTGATTGGG 59.835 50.000 0.00 0.00 0.00 4.12
312 313 2.821378 TGACTTGGCAGATTGTGATTGG 59.179 45.455 0.00 0.00 0.00 3.16
313 314 4.508461 TTGACTTGGCAGATTGTGATTG 57.492 40.909 0.00 0.00 0.00 2.67
314 315 5.534207 TTTTGACTTGGCAGATTGTGATT 57.466 34.783 0.00 0.00 0.00 2.57
315 316 5.244402 TCATTTTGACTTGGCAGATTGTGAT 59.756 36.000 0.00 0.00 0.00 3.06
316 317 4.583907 TCATTTTGACTTGGCAGATTGTGA 59.416 37.500 0.00 0.00 0.00 3.58
317 318 4.682860 GTCATTTTGACTTGGCAGATTGTG 59.317 41.667 0.45 0.00 43.73 3.33
318 319 4.262164 GGTCATTTTGACTTGGCAGATTGT 60.262 41.667 7.51 0.00 46.19 2.71
319 320 4.240096 GGTCATTTTGACTTGGCAGATTG 58.760 43.478 7.51 0.00 46.19 2.67
320 321 3.259123 GGGTCATTTTGACTTGGCAGATT 59.741 43.478 7.51 0.00 46.19 2.40
321 322 2.827921 GGGTCATTTTGACTTGGCAGAT 59.172 45.455 7.51 0.00 46.19 2.90
322 323 2.238521 GGGTCATTTTGACTTGGCAGA 58.761 47.619 7.51 0.00 46.19 4.26
323 324 1.273327 GGGGTCATTTTGACTTGGCAG 59.727 52.381 7.51 0.00 46.19 4.85
324 325 1.337118 GGGGTCATTTTGACTTGGCA 58.663 50.000 7.51 0.00 46.19 4.92
325 326 0.243636 CGGGGTCATTTTGACTTGGC 59.756 55.000 7.51 0.00 46.19 4.52
326 327 1.616159 ACGGGGTCATTTTGACTTGG 58.384 50.000 7.51 0.68 46.19 3.61
327 328 4.839668 TTTACGGGGTCATTTTGACTTG 57.160 40.909 7.51 1.44 46.19 3.16
328 329 4.038282 GGTTTTACGGGGTCATTTTGACTT 59.962 41.667 7.51 0.00 46.19 3.01
329 330 3.570975 GGTTTTACGGGGTCATTTTGACT 59.429 43.478 7.51 0.00 46.19 3.41
330 331 3.305539 GGGTTTTACGGGGTCATTTTGAC 60.306 47.826 0.00 0.00 46.23 3.18
331 332 2.892215 GGGTTTTACGGGGTCATTTTGA 59.108 45.455 0.00 0.00 0.00 2.69
332 333 2.028839 GGGGTTTTACGGGGTCATTTTG 60.029 50.000 0.00 0.00 0.00 2.44
333 334 2.158279 AGGGGTTTTACGGGGTCATTTT 60.158 45.455 0.00 0.00 0.00 1.82
334 335 1.430075 AGGGGTTTTACGGGGTCATTT 59.570 47.619 0.00 0.00 0.00 2.32
335 336 1.078115 AGGGGTTTTACGGGGTCATT 58.922 50.000 0.00 0.00 0.00 2.57
336 337 0.330267 CAGGGGTTTTACGGGGTCAT 59.670 55.000 0.00 0.00 0.00 3.06
337 338 1.061324 ACAGGGGTTTTACGGGGTCA 61.061 55.000 0.00 0.00 0.00 4.02
338 339 0.983467 TACAGGGGTTTTACGGGGTC 59.017 55.000 0.00 0.00 0.00 4.46
339 340 1.443852 TTACAGGGGTTTTACGGGGT 58.556 50.000 0.00 0.00 0.00 4.95
340 341 2.371306 CATTACAGGGGTTTTACGGGG 58.629 52.381 0.00 0.00 0.00 5.73
341 342 2.291089 ACCATTACAGGGGTTTTACGGG 60.291 50.000 0.00 0.00 32.12 5.28
342 343 3.011818 GACCATTACAGGGGTTTTACGG 58.988 50.000 0.00 0.00 37.57 4.02
343 344 3.011818 GGACCATTACAGGGGTTTTACG 58.988 50.000 0.00 0.00 37.57 3.18
344 345 3.011818 CGGACCATTACAGGGGTTTTAC 58.988 50.000 0.00 0.00 37.57 2.01
345 346 2.643801 ACGGACCATTACAGGGGTTTTA 59.356 45.455 0.00 0.00 37.57 1.52
346 347 1.426215 ACGGACCATTACAGGGGTTTT 59.574 47.619 0.00 0.00 37.57 2.43
347 348 1.069775 ACGGACCATTACAGGGGTTT 58.930 50.000 0.00 0.00 37.57 3.27
348 349 0.326927 CACGGACCATTACAGGGGTT 59.673 55.000 0.00 0.00 37.57 4.11
349 350 0.545787 TCACGGACCATTACAGGGGT 60.546 55.000 0.00 0.00 40.96 4.95
350 351 0.178068 CTCACGGACCATTACAGGGG 59.822 60.000 0.00 0.00 0.00 4.79
351 352 0.902531 ACTCACGGACCATTACAGGG 59.097 55.000 0.00 0.00 0.00 4.45
352 353 1.275291 ACACTCACGGACCATTACAGG 59.725 52.381 0.00 0.00 0.00 4.00
353 354 2.743636 ACACTCACGGACCATTACAG 57.256 50.000 0.00 0.00 0.00 2.74
354 355 2.094390 GCTACACTCACGGACCATTACA 60.094 50.000 0.00 0.00 0.00 2.41
355 356 2.094390 TGCTACACTCACGGACCATTAC 60.094 50.000 0.00 0.00 0.00 1.89
356 357 2.172679 TGCTACACTCACGGACCATTA 58.827 47.619 0.00 0.00 0.00 1.90
357 358 0.973632 TGCTACACTCACGGACCATT 59.026 50.000 0.00 0.00 0.00 3.16
358 359 1.195115 ATGCTACACTCACGGACCAT 58.805 50.000 0.00 0.00 0.00 3.55
359 360 0.973632 AATGCTACACTCACGGACCA 59.026 50.000 0.00 0.00 0.00 4.02
360 361 1.359848 CAATGCTACACTCACGGACC 58.640 55.000 0.00 0.00 0.00 4.46
361 362 0.721718 GCAATGCTACACTCACGGAC 59.278 55.000 0.00 0.00 0.00 4.79
362 363 0.608130 AGCAATGCTACACTCACGGA 59.392 50.000 5.69 0.00 36.99 4.69
363 364 1.002366 GAGCAATGCTACACTCACGG 58.998 55.000 8.12 0.00 39.88 4.94
364 365 1.002366 GGAGCAATGCTACACTCACG 58.998 55.000 13.46 0.00 39.71 4.35
365 366 2.393271 AGGAGCAATGCTACACTCAC 57.607 50.000 20.85 0.00 42.99 3.51
366 367 4.551702 TTTAGGAGCAATGCTACACTCA 57.448 40.909 20.85 2.24 42.99 3.41
367 368 5.814783 CATTTTAGGAGCAATGCTACACTC 58.185 41.667 20.85 1.16 42.99 3.51
368 369 5.824904 CATTTTAGGAGCAATGCTACACT 57.175 39.130 20.85 14.91 42.99 3.55
375 376 4.210331 ACCCTAGCATTTTAGGAGCAATG 58.790 43.478 0.71 0.00 42.39 2.82
376 377 4.526438 ACCCTAGCATTTTAGGAGCAAT 57.474 40.909 0.71 0.00 42.39 3.56
377 378 5.190677 GTTACCCTAGCATTTTAGGAGCAA 58.809 41.667 0.71 0.00 42.39 3.91
378 379 4.226394 TGTTACCCTAGCATTTTAGGAGCA 59.774 41.667 0.71 0.00 42.39 4.26
379 380 4.777463 TGTTACCCTAGCATTTTAGGAGC 58.223 43.478 0.71 0.00 42.39 4.70
380 381 6.183360 GCTTTGTTACCCTAGCATTTTAGGAG 60.183 42.308 0.71 0.00 42.39 3.69
381 382 5.650703 GCTTTGTTACCCTAGCATTTTAGGA 59.349 40.000 0.71 0.00 42.39 2.94
382 383 5.163550 GGCTTTGTTACCCTAGCATTTTAGG 60.164 44.000 0.00 0.00 39.99 2.69
383 384 5.652452 AGGCTTTGTTACCCTAGCATTTTAG 59.348 40.000 0.00 0.00 35.36 1.85
384 385 5.417580 CAGGCTTTGTTACCCTAGCATTTTA 59.582 40.000 0.00 0.00 35.36 1.52
385 386 4.220602 CAGGCTTTGTTACCCTAGCATTTT 59.779 41.667 0.00 0.00 35.36 1.82
386 387 3.763897 CAGGCTTTGTTACCCTAGCATTT 59.236 43.478 0.00 0.00 35.36 2.32
387 388 3.356290 CAGGCTTTGTTACCCTAGCATT 58.644 45.455 0.00 0.00 35.36 3.56
388 389 2.945890 GCAGGCTTTGTTACCCTAGCAT 60.946 50.000 0.00 0.00 35.36 3.79
389 390 1.613255 GCAGGCTTTGTTACCCTAGCA 60.613 52.381 0.00 0.00 35.36 3.49
390 391 1.095600 GCAGGCTTTGTTACCCTAGC 58.904 55.000 0.00 0.00 0.00 3.42
391 392 1.282157 AGGCAGGCTTTGTTACCCTAG 59.718 52.381 0.00 0.00 0.00 3.02
392 393 1.004277 CAGGCAGGCTTTGTTACCCTA 59.996 52.381 0.00 0.00 0.00 3.53
393 394 0.251341 CAGGCAGGCTTTGTTACCCT 60.251 55.000 0.00 0.00 0.00 4.34
394 395 0.251165 TCAGGCAGGCTTTGTTACCC 60.251 55.000 0.00 0.00 0.00 3.69
395 396 1.168714 CTCAGGCAGGCTTTGTTACC 58.831 55.000 0.00 0.00 0.00 2.85
396 397 1.168714 CCTCAGGCAGGCTTTGTTAC 58.831 55.000 0.00 0.00 34.56 2.50
397 398 3.650647 CCTCAGGCAGGCTTTGTTA 57.349 52.632 0.00 0.00 34.56 2.41
398 399 4.507969 CCTCAGGCAGGCTTTGTT 57.492 55.556 0.00 0.00 34.56 2.83
415 416 4.847367 CCCAGGAATGGGCCAGGC 62.847 72.222 13.78 1.26 42.99 4.85
422 423 3.727258 TGGCGGACCCAGGAATGG 61.727 66.667 0.00 0.00 39.18 3.16
423 424 2.438434 GTGGCGGACCCAGGAATG 60.438 66.667 0.00 0.00 46.54 2.67
424 425 2.610859 AGTGGCGGACCCAGGAAT 60.611 61.111 0.00 0.00 46.54 3.01
425 426 3.319198 GAGTGGCGGACCCAGGAA 61.319 66.667 0.00 0.00 46.54 3.36
426 427 2.523740 TATGAGTGGCGGACCCAGGA 62.524 60.000 0.00 0.00 46.54 3.86
427 428 2.032860 CTATGAGTGGCGGACCCAGG 62.033 65.000 0.00 0.00 46.54 4.45
428 429 1.330655 ACTATGAGTGGCGGACCCAG 61.331 60.000 0.00 0.00 46.54 4.45
429 430 1.305802 ACTATGAGTGGCGGACCCA 60.306 57.895 0.00 0.00 42.79 4.51
430 431 1.144057 CACTATGAGTGGCGGACCC 59.856 63.158 0.00 0.00 42.35 4.46
431 432 0.103208 CTCACTATGAGTGGCGGACC 59.897 60.000 6.77 0.00 45.94 4.46
432 433 1.103803 TCTCACTATGAGTGGCGGAC 58.896 55.000 6.77 0.00 45.94 4.79
433 434 1.847328 TTCTCACTATGAGTGGCGGA 58.153 50.000 6.77 1.43 45.94 5.54
434 435 2.166459 TCTTTCTCACTATGAGTGGCGG 59.834 50.000 6.77 0.00 45.94 6.13
435 436 3.510388 TCTTTCTCACTATGAGTGGCG 57.490 47.619 6.77 0.00 45.94 5.69
436 437 5.078411 TCTTCTTTCTCACTATGAGTGGC 57.922 43.478 6.77 0.00 45.94 5.01
437 438 5.420421 TCCTCTTCTTTCTCACTATGAGTGG 59.580 44.000 6.77 0.00 45.94 4.00
439 440 6.013379 TGTCCTCTTCTTTCTCACTATGAGT 58.987 40.000 5.77 0.00 44.58 3.41
440 441 6.522625 TGTCCTCTTCTTTCTCACTATGAG 57.477 41.667 0.00 0.00 45.59 2.90
441 442 7.286546 CCTATGTCCTCTTCTTTCTCACTATGA 59.713 40.741 0.00 0.00 0.00 2.15
442 443 7.069331 ACCTATGTCCTCTTCTTTCTCACTATG 59.931 40.741 0.00 0.00 0.00 2.23
443 444 7.129425 ACCTATGTCCTCTTCTTTCTCACTAT 58.871 38.462 0.00 0.00 0.00 2.12
444 445 6.494952 ACCTATGTCCTCTTCTTTCTCACTA 58.505 40.000 0.00 0.00 0.00 2.74
445 446 5.337788 ACCTATGTCCTCTTCTTTCTCACT 58.662 41.667 0.00 0.00 0.00 3.41
446 447 5.669164 ACCTATGTCCTCTTCTTTCTCAC 57.331 43.478 0.00 0.00 0.00 3.51
447 448 7.182760 TCTAACCTATGTCCTCTTCTTTCTCA 58.817 38.462 0.00 0.00 0.00 3.27
448 449 7.201875 CCTCTAACCTATGTCCTCTTCTTTCTC 60.202 44.444 0.00 0.00 0.00 2.87
459 460 4.585581 GTCTCCTTCCTCTAACCTATGTCC 59.414 50.000 0.00 0.00 0.00 4.02
466 467 4.716794 TCTATCGTCTCCTTCCTCTAACC 58.283 47.826 0.00 0.00 0.00 2.85
554 555 2.404559 AGCTCCACCGGGTATAATTGA 58.595 47.619 6.32 0.00 34.93 2.57
566 567 2.698797 TGCTAGGTTACATAGCTCCACC 59.301 50.000 25.65 1.13 44.83 4.61
580 581 3.700038 ACTTACGAGCAGTAATGCTAGGT 59.300 43.478 25.35 22.77 46.36 3.08
591 592 2.257974 TGCGACTTACTTACGAGCAG 57.742 50.000 0.00 0.00 0.00 4.24
642 643 9.490379 GTATACCTGTCTCCCAGTATAATTTTG 57.510 37.037 0.00 0.00 39.74 2.44
676 677 1.541147 ACAAGCATACGCACAGCAATT 59.459 42.857 0.00 0.00 42.27 2.32
745 765 8.861086 TGTGTCTCTTAGAAAATGTACTCTCTT 58.139 33.333 0.00 0.00 0.00 2.85
746 766 8.301002 GTGTGTCTCTTAGAAAATGTACTCTCT 58.699 37.037 0.00 0.00 0.00 3.10
747 767 8.082852 TGTGTGTCTCTTAGAAAATGTACTCTC 58.917 37.037 0.00 0.00 0.00 3.20
748 768 7.952671 TGTGTGTCTCTTAGAAAATGTACTCT 58.047 34.615 0.00 0.00 0.00 3.24
749 769 7.868415 ACTGTGTGTCTCTTAGAAAATGTACTC 59.132 37.037 0.00 0.00 0.00 2.59
754 774 5.180117 CCCACTGTGTGTCTCTTAGAAAATG 59.820 44.000 7.08 0.00 0.00 2.32
767 1131 1.742411 CGTGAGTTTCCCACTGTGTGT 60.742 52.381 7.08 0.00 35.01 3.72
768 1132 0.937304 CGTGAGTTTCCCACTGTGTG 59.063 55.000 7.08 0.00 35.01 3.82
890 1254 1.476845 TAAGGGGTGCAGAGCGTGAA 61.477 55.000 0.00 0.00 0.00 3.18
964 1336 1.246056 TGTTGGATGAAGCTGGCTGC 61.246 55.000 8.47 8.47 43.29 5.25
1498 1877 7.591006 ATTATCTTGAAACAAGCATGCAAAG 57.409 32.000 21.98 11.41 0.00 2.77
1545 1989 5.333299 TGTAATACTGCAGATTACCGTGT 57.667 39.130 27.63 9.54 38.47 4.49
1581 2035 1.302431 CTTCCCCGTGCACATCACA 60.302 57.895 18.64 0.00 45.92 3.58
1776 2230 4.312052 GCCTGGGCACATTCGTTA 57.688 55.556 6.75 0.00 41.49 3.18
1870 2331 6.907853 TCCATGTTGAATTTTGTCCATGTA 57.092 33.333 0.00 0.00 0.00 2.29
1944 2412 1.070914 TGATTTCCTGGTGTACACGCA 59.929 47.619 19.41 16.35 0.00 5.24
1992 2460 3.781079 TTGTTTTGTTCAGCTCTGTGG 57.219 42.857 0.00 0.00 0.00 4.17
2148 3159 0.321653 GCAACGGGTCAGGACAAGAT 60.322 55.000 1.41 0.00 0.00 2.40
2163 3174 1.609932 CGCATGATGAAGTGTGCAAC 58.390 50.000 0.00 0.00 37.44 4.17
2197 3473 9.094578 CTGTCTAGAATTGAAATAGGGGATCTA 57.905 37.037 0.00 0.00 0.00 1.98
2198 3474 7.474079 GCTGTCTAGAATTGAAATAGGGGATCT 60.474 40.741 0.00 0.00 0.00 2.75
2199 3475 6.652900 GCTGTCTAGAATTGAAATAGGGGATC 59.347 42.308 0.00 0.00 0.00 3.36
2200 3476 6.466470 GGCTGTCTAGAATTGAAATAGGGGAT 60.466 42.308 0.00 0.00 0.00 3.85
2202 3478 5.066593 GGCTGTCTAGAATTGAAATAGGGG 58.933 45.833 0.00 0.00 0.00 4.79
2203 3479 5.934781 AGGCTGTCTAGAATTGAAATAGGG 58.065 41.667 0.00 0.00 0.00 3.53
2204 3480 7.821846 GGATAGGCTGTCTAGAATTGAAATAGG 59.178 40.741 11.21 0.00 0.00 2.57
2206 3482 8.497910 AGGATAGGCTGTCTAGAATTGAAATA 57.502 34.615 11.21 0.00 0.00 1.40
2207 3483 7.385894 AGGATAGGCTGTCTAGAATTGAAAT 57.614 36.000 11.21 0.00 0.00 2.17
2211 3487 5.719173 GCTAGGATAGGCTGTCTAGAATTG 58.281 45.833 18.35 0.00 39.70 2.32
2212 3488 5.993748 GCTAGGATAGGCTGTCTAGAATT 57.006 43.478 18.35 0.00 39.70 2.17
2312 3591 5.237127 TCACTACCGTACCTATGATAACGTG 59.763 44.000 0.00 0.00 33.63 4.49
2436 3716 2.669569 CTCCACAACCAGGCCACG 60.670 66.667 5.01 0.00 0.00 4.94
2439 3719 0.110486 TTTCTCTCCACAACCAGGCC 59.890 55.000 0.00 0.00 0.00 5.19
2444 3724 2.372172 TCTTCCCTTTCTCTCCACAACC 59.628 50.000 0.00 0.00 0.00 3.77
2448 3728 5.485209 TTTACTCTTCCCTTTCTCTCCAC 57.515 43.478 0.00 0.00 0.00 4.02
2465 3745 8.793592 GTGTGACTTATCTTCCCAATTTTTACT 58.206 33.333 0.00 0.00 0.00 2.24
2475 3755 4.162320 TCATCTGGTGTGACTTATCTTCCC 59.838 45.833 0.00 0.00 0.00 3.97
2480 3760 5.590530 ACTCTCATCTGGTGTGACTTATC 57.409 43.478 0.00 0.00 0.00 1.75
2533 3813 6.388278 GGAGTAATAGTGACGAAACAACTCT 58.612 40.000 0.00 0.00 33.16 3.24
2534 3814 5.575995 GGGAGTAATAGTGACGAAACAACTC 59.424 44.000 0.00 0.00 0.00 3.01
2535 3815 5.245526 AGGGAGTAATAGTGACGAAACAACT 59.754 40.000 0.00 0.00 0.00 3.16
2536 3816 5.476614 AGGGAGTAATAGTGACGAAACAAC 58.523 41.667 0.00 0.00 0.00 3.32
2544 3824 9.804977 TTTAGGTATAGAGGGAGTAATAGTGAC 57.195 37.037 0.00 0.00 0.00 3.67
2554 3834 9.629878 ACGACATATATTTAGGTATAGAGGGAG 57.370 37.037 0.00 0.00 0.00 4.30
2563 3843 8.517878 GCTACTCCAACGACATATATTTAGGTA 58.482 37.037 0.00 0.00 0.00 3.08
2564 3844 7.232941 AGCTACTCCAACGACATATATTTAGGT 59.767 37.037 0.00 0.00 0.00 3.08
2565 3845 7.542477 CAGCTACTCCAACGACATATATTTAGG 59.458 40.741 0.00 0.00 0.00 2.69
2570 3850 4.524714 AGCAGCTACTCCAACGACATATAT 59.475 41.667 0.00 0.00 0.00 0.86
2571 3851 3.889538 AGCAGCTACTCCAACGACATATA 59.110 43.478 0.00 0.00 0.00 0.86
2573 3853 2.099263 GAGCAGCTACTCCAACGACATA 59.901 50.000 2.14 0.00 0.00 2.29
2574 3854 0.898320 AGCAGCTACTCCAACGACAT 59.102 50.000 0.00 0.00 0.00 3.06
2575 3855 0.243907 GAGCAGCTACTCCAACGACA 59.756 55.000 2.14 0.00 0.00 4.35
2576 3856 3.037485 GAGCAGCTACTCCAACGAC 57.963 57.895 2.14 0.00 0.00 4.34
2589 3869 1.524355 CGAAATATGTCGCTGGAGCAG 59.476 52.381 1.56 0.00 42.21 4.24
2590 3870 1.570813 CGAAATATGTCGCTGGAGCA 58.429 50.000 1.56 0.00 42.21 4.26
2591 3871 0.861837 CCGAAATATGTCGCTGGAGC 59.138 55.000 9.95 0.00 39.74 4.70
2592 3872 0.861837 GCCGAAATATGTCGCTGGAG 59.138 55.000 9.95 0.00 39.74 3.86
2593 3873 0.176910 TGCCGAAATATGTCGCTGGA 59.823 50.000 9.95 0.00 39.74 3.86
2594 3874 0.304705 GTGCCGAAATATGTCGCTGG 59.695 55.000 9.95 0.00 39.74 4.85
2595 3875 1.004610 CTGTGCCGAAATATGTCGCTG 60.005 52.381 9.95 0.00 39.74 5.18
2596 3876 1.134818 TCTGTGCCGAAATATGTCGCT 60.135 47.619 9.95 0.00 39.74 4.93
2597 3877 1.258982 CTCTGTGCCGAAATATGTCGC 59.741 52.381 9.95 6.31 39.74 5.19
2598 3878 1.258982 GCTCTGTGCCGAAATATGTCG 59.741 52.381 8.41 8.41 40.77 4.35
2622 3902 4.268359 CATTCAAAGAAGAGAGAAGGGGG 58.732 47.826 0.00 0.00 0.00 5.40
2623 3903 3.693578 GCATTCAAAGAAGAGAGAAGGGG 59.306 47.826 0.00 0.00 0.00 4.79
2624 3904 4.330250 TGCATTCAAAGAAGAGAGAAGGG 58.670 43.478 0.00 0.00 0.00 3.95
2625 3905 6.323266 CAATGCATTCAAAGAAGAGAGAAGG 58.677 40.000 9.53 0.00 0.00 3.46
2626 3906 5.800941 GCAATGCATTCAAAGAAGAGAGAAG 59.199 40.000 9.53 0.00 0.00 2.85
2627 3907 5.336213 GGCAATGCATTCAAAGAAGAGAGAA 60.336 40.000 9.53 0.00 0.00 2.87
2628 3908 4.157289 GGCAATGCATTCAAAGAAGAGAGA 59.843 41.667 9.53 0.00 0.00 3.10
2629 3909 4.082408 TGGCAATGCATTCAAAGAAGAGAG 60.082 41.667 9.53 0.00 0.00 3.20
2630 3910 3.827876 TGGCAATGCATTCAAAGAAGAGA 59.172 39.130 9.53 0.00 0.00 3.10
2631 3911 4.174009 CTGGCAATGCATTCAAAGAAGAG 58.826 43.478 9.53 0.00 0.00 2.85
2640 3920 1.396653 ACCTAGCTGGCAATGCATTC 58.603 50.000 9.53 4.70 40.22 2.67
2644 3924 4.261614 GGTAAAATACCTAGCTGGCAATGC 60.262 45.833 0.00 0.00 45.52 3.56
2673 3953 9.755804 CTGATGTTTGTGTACAGTATGATAGAT 57.244 33.333 0.00 0.00 39.69 1.98
2674 3954 8.197439 CCTGATGTTTGTGTACAGTATGATAGA 58.803 37.037 0.00 0.00 39.69 1.98
2675 3955 8.197439 TCCTGATGTTTGTGTACAGTATGATAG 58.803 37.037 0.00 0.00 39.69 2.08
2676 3956 7.979537 GTCCTGATGTTTGTGTACAGTATGATA 59.020 37.037 0.00 0.00 39.69 2.15
2677 3957 6.818644 GTCCTGATGTTTGTGTACAGTATGAT 59.181 38.462 0.00 0.00 39.69 2.45
2678 3958 6.014584 AGTCCTGATGTTTGTGTACAGTATGA 60.015 38.462 0.00 0.00 39.69 2.15
2679 3959 6.091305 CAGTCCTGATGTTTGTGTACAGTATG 59.909 42.308 0.00 0.00 46.00 2.39
2680 3960 6.166279 CAGTCCTGATGTTTGTGTACAGTAT 58.834 40.000 0.00 0.00 0.00 2.12
2684 3964 4.377021 GACAGTCCTGATGTTTGTGTACA 58.623 43.478 0.40 0.00 0.00 2.90
2710 3990 4.814771 AGGAACGTTGAAAAGTCAAGTAGG 59.185 41.667 5.00 0.00 44.44 3.18
2751 4032 5.047235 CCCCAACTGGAGTAGCATATAGTAC 60.047 48.000 0.00 0.00 37.39 2.73
2760 4041 0.690762 TTGACCCCAACTGGAGTAGC 59.309 55.000 0.00 0.00 37.39 3.58
2765 4076 3.390175 TTTTCTTTGACCCCAACTGGA 57.610 42.857 0.00 0.00 37.39 3.86
2816 4298 6.630071 ACTAGTCAAACATGCAAACACTTTT 58.370 32.000 0.00 0.00 0.00 2.27
2945 4434 6.152154 TGAAATGTATACTCAAGTCAGGTCGA 59.848 38.462 4.17 0.00 0.00 4.20
3005 4729 2.750815 GCGTCAAGCTGTTCGGTAT 58.249 52.632 0.00 0.00 44.04 2.73
3165 5394 4.785453 CCCTCCCTCGCCTGCAAC 62.785 72.222 0.00 0.00 0.00 4.17
3401 5641 5.527582 GCTTCTACGTACATCATTTCCCATT 59.472 40.000 0.00 0.00 0.00 3.16
3498 5748 1.463674 ATGTTCTTGTTGATCGGGGC 58.536 50.000 0.00 0.00 0.00 5.80
3503 5753 9.065871 GTGCAGTAATTAATGTTCTTGTTGATC 57.934 33.333 13.91 0.00 0.00 2.92
3518 5780 3.259064 GGTCAGCTTCGTGCAGTAATTA 58.741 45.455 0.00 0.00 45.94 1.40
3535 5797 0.325602 TGAGATGTGCATGCTGGTCA 59.674 50.000 20.33 12.76 0.00 4.02
3581 5852 1.068434 ACCGCTGGACCACAAAAATTG 59.932 47.619 0.00 0.00 0.00 2.32
4050 6344 1.143838 CATGTTCGGGATGAGCGGA 59.856 57.895 0.00 0.00 0.00 5.54
4394 6688 6.403418 GGGACGTAGAGGATGAATTATACGAG 60.403 46.154 9.27 0.00 39.30 4.18
4395 6689 5.413833 GGGACGTAGAGGATGAATTATACGA 59.586 44.000 9.27 0.00 39.30 3.43
4396 6690 5.415077 AGGGACGTAGAGGATGAATTATACG 59.585 44.000 0.00 0.00 41.17 3.06
4397 6691 6.208994 ACAGGGACGTAGAGGATGAATTATAC 59.791 42.308 0.00 0.00 0.00 1.47
4398 6692 6.312529 ACAGGGACGTAGAGGATGAATTATA 58.687 40.000 0.00 0.00 0.00 0.98
4399 6693 5.148502 ACAGGGACGTAGAGGATGAATTAT 58.851 41.667 0.00 0.00 0.00 1.28
4409 6703 3.870633 AAAAGCTACAGGGACGTAGAG 57.129 47.619 2.36 0.00 41.21 2.43
4457 6752 9.656040 AAACTGATTTATTTTATTGCATGCAGA 57.344 25.926 21.50 12.42 0.00 4.26
4486 6782 1.202687 TGAGAATTAGCCGCATCCCAG 60.203 52.381 0.00 0.00 0.00 4.45
4487 6783 0.836606 TGAGAATTAGCCGCATCCCA 59.163 50.000 0.00 0.00 0.00 4.37
4488 6784 1.202698 ACTGAGAATTAGCCGCATCCC 60.203 52.381 0.00 0.00 0.00 3.85
4500 6797 6.380274 TGGTTAAGTCCTAATCGACTGAGAAT 59.620 38.462 0.00 0.00 42.35 2.40
4653 6966 5.710513 TTTCTTTGGTCTGGATGATGTTG 57.289 39.130 0.00 0.00 0.00 3.33
4680 6993 5.678955 TCTGACTAGCTAGTAGACACTCA 57.321 43.478 26.11 16.07 36.50 3.41
4692 7007 4.082845 TGTGCTCTAACTTCTGACTAGCT 58.917 43.478 0.00 0.00 0.00 3.32
4693 7008 4.442375 TGTGCTCTAACTTCTGACTAGC 57.558 45.455 0.00 0.00 0.00 3.42
4694 7009 7.897575 AAAATGTGCTCTAACTTCTGACTAG 57.102 36.000 0.00 0.00 0.00 2.57
4695 7010 9.944376 ATTAAAATGTGCTCTAACTTCTGACTA 57.056 29.630 0.00 0.00 0.00 2.59
4696 7011 8.725148 CATTAAAATGTGCTCTAACTTCTGACT 58.275 33.333 0.00 0.00 0.00 3.41
4697 7012 7.483059 GCATTAAAATGTGCTCTAACTTCTGAC 59.517 37.037 4.71 0.00 38.65 3.51
4701 7016 8.519492 TTTGCATTAAAATGTGCTCTAACTTC 57.481 30.769 4.71 0.00 41.78 3.01
4728 7043 3.625764 GTCTGAACTTTGCTGTGTTGGTA 59.374 43.478 0.00 0.00 0.00 3.25
4783 7098 6.688578 TCCATGTTGTGTTCTCTAGTTACTC 58.311 40.000 0.00 0.00 0.00 2.59
4856 7171 4.634703 ATGTTGCGCGTGGTGGGA 62.635 61.111 8.43 0.00 0.00 4.37
4858 7173 1.274798 GAAAATGTTGCGCGTGGTGG 61.275 55.000 8.43 0.00 0.00 4.61
4864 7179 1.447938 GACAGTTGAAAATGTTGCGCG 59.552 47.619 0.00 0.00 0.00 6.86
4893 7208 7.602644 TGTAAGATGTGGTTTGACTCTGTATTC 59.397 37.037 0.00 0.00 0.00 1.75
4918 7233 5.406780 GCTCTCGTTCCAGATTGGTATAATG 59.593 44.000 0.00 0.00 39.03 1.90
4925 7240 2.099141 TTGCTCTCGTTCCAGATTGG 57.901 50.000 0.00 0.00 39.43 3.16
4935 7250 3.050275 GGCGCCTTTTGCTCTCGT 61.050 61.111 22.15 0.00 38.05 4.18
4959 7274 0.792640 GAGACAGTGTTGTGGATGCG 59.207 55.000 0.00 0.00 37.76 4.73
4973 7288 5.046376 TGAATCTGTATCCTGCAAAGAGACA 60.046 40.000 11.95 11.95 34.50 3.41
4979 7294 5.048083 GTGGTTTGAATCTGTATCCTGCAAA 60.048 40.000 0.00 0.00 0.00 3.68
4992 7307 9.403110 GATATAATGCAAGATGTGGTTTGAATC 57.597 33.333 0.00 0.00 0.00 2.52
5009 7324 4.082517 TCTCGAGCCAGACTGATATAATGC 60.083 45.833 7.81 0.00 0.00 3.56
5072 7387 1.139853 ACGAGGGCTTCTGATGGAATC 59.860 52.381 0.00 0.00 45.83 2.52
5084 7399 3.105283 AGTACAAGGATTTACGAGGGCT 58.895 45.455 0.00 0.00 0.00 5.19
5089 7404 5.302360 ACAAAGCAGTACAAGGATTTACGA 58.698 37.500 0.00 0.00 0.00 3.43
5129 7445 3.536956 TGTTCTAGGGCTGGTTTATCG 57.463 47.619 0.00 0.00 0.00 2.92
5168 7484 5.126061 ACTCCATTGCTTTTAATAGGTGCTG 59.874 40.000 0.00 0.00 0.00 4.41
5203 7519 2.632028 TGTTGTCATGTGGGGGAAATTG 59.368 45.455 0.00 0.00 0.00 2.32
5204 7520 2.969628 TGTTGTCATGTGGGGGAAATT 58.030 42.857 0.00 0.00 0.00 1.82
5208 7524 2.916269 TCTTATGTTGTCATGTGGGGGA 59.084 45.455 0.00 0.00 35.70 4.81
5265 7581 4.470334 AAATCAGTTGCAAAACACTGGT 57.530 36.364 14.64 6.34 31.94 4.00
5313 7629 2.034685 GGCTGGTTTGAGGTTGAAAGTC 59.965 50.000 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.