Multiple sequence alignment - TraesCS4D01G297400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G297400 chr4D 100.000 5133 0 0 1 5133 466402356 466407488 0.000000e+00 9479.0
1 TraesCS4D01G297400 chr4D 93.687 2265 85 19 1 2226 466333351 466335596 0.000000e+00 3338.0
2 TraesCS4D01G297400 chr4D 94.345 1450 49 13 2706 4154 466335761 466337178 0.000000e+00 2193.0
3 TraesCS4D01G297400 chr4D 88.073 1484 109 45 2703 4154 466293859 466295306 0.000000e+00 1698.0
4 TraesCS4D01G297400 chr4D 91.795 1231 57 17 1003 2219 466730843 466729643 0.000000e+00 1674.0
5 TraesCS4D01G297400 chr4D 85.429 1551 95 49 733 2227 466292212 466293687 0.000000e+00 1491.0
6 TraesCS4D01G297400 chr4D 96.019 854 28 3 3288 4140 466728288 466727440 0.000000e+00 1384.0
7 TraesCS4D01G297400 chr4D 93.807 872 53 1 1001 1871 467116753 467117624 0.000000e+00 1310.0
8 TraesCS4D01G297400 chr4D 86.622 299 28 5 2944 3242 466728702 466728416 2.310000e-83 320.0
9 TraesCS4D01G297400 chr4D 96.875 160 4 1 2488 2647 466335601 466335759 3.050000e-67 267.0
10 TraesCS4D01G297400 chr4D 87.425 167 10 6 2494 2649 466293693 466293859 1.140000e-41 182.0
11 TraesCS4D01G297400 chr4D 89.076 119 10 3 2705 2820 466729016 466728898 1.490000e-30 145.0
12 TraesCS4D01G297400 chr4D 95.652 46 2 0 2661 2706 121813439 121813394 1.980000e-09 75.0
13 TraesCS4D01G297400 chr4D 95.652 46 2 0 2662 2707 421087771 421087726 1.980000e-09 75.0
14 TraesCS4D01G297400 chr4B 90.706 2238 103 26 58 2231 584124945 584127141 0.000000e+00 2883.0
15 TraesCS4D01G297400 chr4B 89.983 2296 109 33 2 2231 584053537 584055777 0.000000e+00 2854.0
16 TraesCS4D01G297400 chr4B 94.705 1662 55 14 2705 4343 584127284 584128935 0.000000e+00 2551.0
17 TraesCS4D01G297400 chr4B 94.258 1463 57 10 2705 4146 584055920 584057376 0.000000e+00 2211.0
18 TraesCS4D01G297400 chr4B 91.667 1224 79 17 2943 4154 583767407 583768619 0.000000e+00 1674.0
19 TraesCS4D01G297400 chr4B 86.852 1544 94 46 733 2220 583765338 583766828 0.000000e+00 1626.0
20 TraesCS4D01G297400 chr4B 92.649 857 52 6 3287 4140 584527794 584526946 0.000000e+00 1223.0
21 TraesCS4D01G297400 chr4B 89.534 879 82 9 1001 1871 584872375 584873251 0.000000e+00 1105.0
22 TraesCS4D01G297400 chr4B 96.059 406 16 0 1528 1933 584529307 584528902 0.000000e+00 662.0
23 TraesCS4D01G297400 chr4B 93.436 259 17 0 2230 2488 418510722 418510980 8.060000e-103 385.0
24 TraesCS4D01G297400 chr4B 86.333 300 27 7 2944 3242 584528225 584527939 1.070000e-81 315.0
25 TraesCS4D01G297400 chr4B 97.902 143 3 0 2488 2630 584055775 584055917 1.100000e-61 248.0
26 TraesCS4D01G297400 chr4B 97.203 143 4 0 2488 2630 584127139 584127281 5.130000e-60 243.0
27 TraesCS4D01G297400 chr4B 92.029 138 3 4 2519 2649 583766841 583766977 2.440000e-43 187.0
28 TraesCS4D01G297400 chr4B 92.391 92 5 2 2705 2794 583766976 583767067 4.170000e-26 130.0
29 TraesCS4D01G297400 chr4A 91.761 2112 107 32 2936 5023 4194506 4192438 0.000000e+00 2874.0
30 TraesCS4D01G297400 chr4A 93.668 1216 58 7 2943 4154 4473168 4471968 0.000000e+00 1801.0
31 TraesCS4D01G297400 chr4A 92.090 1239 43 24 929 2121 4196478 4195249 0.000000e+00 1694.0
32 TraesCS4D01G297400 chr4A 91.673 1225 73 17 2943 4154 4239469 4238261 0.000000e+00 1670.0
33 TraesCS4D01G297400 chr4A 90.577 1231 60 20 998 2200 4157854 4159056 0.000000e+00 1580.0
34 TraesCS4D01G297400 chr4A 85.374 1552 75 51 733 2220 4475496 4474033 0.000000e+00 1469.0
35 TraesCS4D01G297400 chr4A 85.743 1473 89 51 733 2143 4241722 4240309 0.000000e+00 1445.0
36 TraesCS4D01G297400 chr4A 88.485 964 69 20 1 937 4197480 4196532 0.000000e+00 1127.0
37 TraesCS4D01G297400 chr4A 91.606 274 20 3 2226 2496 494702788 494702515 4.850000e-100 375.0
38 TraesCS4D01G297400 chr4A 78.495 372 66 12 287 648 601174077 601174444 1.110000e-56 231.0
39 TraesCS4D01G297400 chr4A 96.396 111 4 0 2539 2649 4474021 4473911 3.160000e-42 183.0
40 TraesCS4D01G297400 chr4A 95.960 99 4 0 2487 2585 4194889 4194791 1.480000e-35 161.0
41 TraesCS4D01G297400 chr4A 88.194 144 4 6 2519 2651 4239945 4239804 5.320000e-35 159.0
42 TraesCS4D01G297400 chr4A 90.385 104 8 2 2705 2806 4473912 4473809 8.960000e-28 135.0
43 TraesCS4D01G297400 chr4A 89.524 105 7 4 2705 2805 4159601 4159705 4.170000e-26 130.0
44 TraesCS4D01G297400 chr4A 92.500 80 6 0 2147 2226 4240031 4239952 1.170000e-21 115.0
45 TraesCS4D01G297400 chr4A 90.278 72 6 1 2703 2773 4239695 4239624 5.470000e-15 93.5
46 TraesCS4D01G297400 chrUn 94.949 396 12 1 1624 2011 479224296 479223901 9.450000e-172 614.0
47 TraesCS4D01G297400 chrUn 90.000 50 3 2 2661 2709 23661073 23661025 4.290000e-06 63.9
48 TraesCS4D01G297400 chr3B 93.511 262 17 0 2229 2490 168523812 168523551 1.730000e-104 390.0
49 TraesCS4D01G297400 chr2B 92.058 277 21 1 2230 2505 475256407 475256683 6.230000e-104 388.0
50 TraesCS4D01G297400 chr2B 92.830 265 19 0 2226 2490 513201104 513201368 8.060000e-103 385.0
51 TraesCS4D01G297400 chr2B 76.940 464 88 17 185 635 587246018 587245561 3.970000e-61 246.0
52 TraesCS4D01G297400 chr2D 92.830 265 19 0 2229 2493 64978489 64978225 8.060000e-103 385.0
53 TraesCS4D01G297400 chr2D 95.652 46 2 0 2661 2706 51247654 51247609 1.980000e-09 75.0
54 TraesCS4D01G297400 chr7D 92.509 267 20 0 2225 2491 209183932 209183666 2.900000e-102 383.0
55 TraesCS4D01G297400 chr7D 76.739 417 79 15 236 642 28543481 28543073 3.110000e-52 217.0
56 TraesCS4D01G297400 chr7D 98.291 117 2 0 5017 5133 484418104 484418220 6.740000e-49 206.0
57 TraesCS4D01G297400 chr7D 87.755 98 12 0 4708 4805 576840707 576840804 1.170000e-21 115.0
58 TraesCS4D01G297400 chr1B 91.912 272 20 2 2230 2499 2308163 2308434 3.750000e-101 379.0
59 TraesCS4D01G297400 chr1B 80.990 384 58 9 256 631 45351672 45351296 1.810000e-74 291.0
60 TraesCS4D01G297400 chr1B 77.322 463 89 14 186 636 45350269 45349811 5.100000e-65 259.0
61 TraesCS4D01G297400 chr5B 91.667 276 18 5 2216 2490 507103878 507104149 1.350000e-100 377.0
62 TraesCS4D01G297400 chr5B 80.506 395 57 16 235 616 338935177 338934790 8.410000e-73 285.0
63 TraesCS4D01G297400 chr6A 79.206 428 72 15 234 648 423308351 423308774 1.090000e-71 281.0
64 TraesCS4D01G297400 chr6A 99.123 114 0 1 5020 5133 88084593 88084705 2.420000e-48 204.0
65 TraesCS4D01G297400 chr6A 94.444 54 2 1 2661 2713 11165101 11165048 1.180000e-11 82.4
66 TraesCS4D01G297400 chr3D 82.508 303 46 6 360 656 84581168 84581469 5.100000e-65 259.0
67 TraesCS4D01G297400 chr3D 98.319 119 1 1 5016 5133 462238694 462238812 1.870000e-49 207.0
68 TraesCS4D01G297400 chr3D 98.291 117 2 0 5017 5133 239582949 239582833 6.740000e-49 206.0
69 TraesCS4D01G297400 chr3D 95.918 49 1 1 2666 2713 449752061 449752013 1.530000e-10 78.7
70 TraesCS4D01G297400 chr6D 99.123 114 1 0 5020 5133 275465313 275465200 6.740000e-49 206.0
71 TraesCS4D01G297400 chr6D 100.000 111 0 0 5023 5133 402837688 402837578 6.740000e-49 206.0
72 TraesCS4D01G297400 chr6D 93.617 47 3 0 2660 2706 10762940 10762894 2.560000e-08 71.3
73 TraesCS4D01G297400 chr5D 99.123 114 1 0 5020 5133 95870430 95870543 6.740000e-49 206.0
74 TraesCS4D01G297400 chr5D 97.479 119 3 0 5015 5133 395736433 395736551 2.420000e-48 204.0
75 TraesCS4D01G297400 chr5D 95.745 47 1 1 2661 2707 52614276 52614231 1.980000e-09 75.0
76 TraesCS4D01G297400 chr5D 89.286 56 4 2 2825 2879 390511420 390511474 9.220000e-08 69.4
77 TraesCS4D01G297400 chr1D 100.000 111 0 0 5023 5133 197528687 197528797 6.740000e-49 206.0
78 TraesCS4D01G297400 chr7B 93.878 49 2 1 2660 2707 633856528 633856576 7.130000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G297400 chr4D 466402356 466407488 5132 False 9479.000000 9479 100.000000 1 5133 1 chr4D.!!$F1 5132
1 TraesCS4D01G297400 chr4D 466333351 466337178 3827 False 1932.666667 3338 94.969000 1 4154 3 chr4D.!!$F4 4153
2 TraesCS4D01G297400 chr4D 467116753 467117624 871 False 1310.000000 1310 93.807000 1001 1871 1 chr4D.!!$F2 870
3 TraesCS4D01G297400 chr4D 466292212 466295306 3094 False 1123.666667 1698 86.975667 733 4154 3 chr4D.!!$F3 3421
4 TraesCS4D01G297400 chr4D 466727440 466730843 3403 True 880.750000 1674 90.878000 1003 4140 4 chr4D.!!$R3 3137
5 TraesCS4D01G297400 chr4B 584124945 584128935 3990 False 1892.333333 2883 94.204667 58 4343 3 chr4B.!!$F5 4285
6 TraesCS4D01G297400 chr4B 584053537 584057376 3839 False 1771.000000 2854 94.047667 2 4146 3 chr4B.!!$F4 4144
7 TraesCS4D01G297400 chr4B 584872375 584873251 876 False 1105.000000 1105 89.534000 1001 1871 1 chr4B.!!$F2 870
8 TraesCS4D01G297400 chr4B 583765338 583768619 3281 False 904.250000 1674 90.734750 733 4154 4 chr4B.!!$F3 3421
9 TraesCS4D01G297400 chr4B 584526946 584529307 2361 True 733.333333 1223 91.680333 1528 4140 3 chr4B.!!$R1 2612
10 TraesCS4D01G297400 chr4A 4192438 4197480 5042 True 1464.000000 2874 92.074000 1 5023 4 chr4A.!!$R2 5022
11 TraesCS4D01G297400 chr4A 4471968 4475496 3528 True 897.000000 1801 91.455750 733 4154 4 chr4A.!!$R4 3421
12 TraesCS4D01G297400 chr4A 4157854 4159705 1851 False 855.000000 1580 90.050500 998 2805 2 chr4A.!!$F2 1807
13 TraesCS4D01G297400 chr4A 4238261 4241722 3461 True 696.500000 1670 89.677600 733 4154 5 chr4A.!!$R3 3421
14 TraesCS4D01G297400 chr1B 45349811 45351672 1861 True 275.000000 291 79.156000 186 636 2 chr1B.!!$R1 450

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
608 628 0.176680 AATCGTGAGGCAATCGAGCT 59.823 50.0 0.0 0.0 37.04 4.09 F
2152 2935 0.244450 CATGTGCCTTGCCGATTTGT 59.756 50.0 0.0 0.0 0.00 2.83 F
2617 3831 0.110373 CGCCTTGACTTTTACCGCAC 60.110 55.0 0.0 0.0 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2237 3020 0.802494 GGCACTACGTTGTGGAATGG 59.198 55.0 27.13 5.53 38.31 3.16 R
3057 5123 0.337428 AGAATGGCAAGCCCCAGATT 59.663 50.0 8.89 1.24 38.50 2.40 R
4428 6783 0.109597 GTCGCGAGTCCTTAACCGAA 60.110 55.0 10.24 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 1.134907 GGCCATTTGTTCTGCATCAGG 60.135 52.381 0.00 0.00 31.51 3.86
50 51 1.822990 CCATTTGTTCTGCATCAGGCT 59.177 47.619 0.00 0.00 45.15 4.58
51 52 3.018856 CCATTTGTTCTGCATCAGGCTA 58.981 45.455 0.00 0.00 45.15 3.93
67 71 4.074970 CAGGCTACAAACAAATCTGACCT 58.925 43.478 0.00 0.00 0.00 3.85
68 72 4.520492 CAGGCTACAAACAAATCTGACCTT 59.480 41.667 0.00 0.00 0.00 3.50
117 123 8.847196 CCCTAGCCAGTCCTTTTTATTTTATAC 58.153 37.037 0.00 0.00 0.00 1.47
226 234 3.508012 CAGGTCTCACAGTAAGCAGTACT 59.492 47.826 0.00 0.00 44.33 2.73
227 235 3.759618 AGGTCTCACAGTAAGCAGTACTC 59.240 47.826 0.00 0.00 41.37 2.59
229 237 3.090037 TCTCACAGTAAGCAGTACTCCC 58.910 50.000 0.00 0.00 41.37 4.30
233 241 1.816835 CAGTAAGCAGTACTCCCGACA 59.183 52.381 0.00 0.00 41.37 4.35
247 255 6.827586 ACTCCCGACATGCTTTTATTTTTA 57.172 33.333 0.00 0.00 0.00 1.52
248 256 7.222000 ACTCCCGACATGCTTTTATTTTTAA 57.778 32.000 0.00 0.00 0.00 1.52
498 515 2.413837 GCTTGGTAAAAGCGAGTGAGA 58.586 47.619 0.00 0.00 33.20 3.27
508 525 3.273919 AGCGAGTGAGAAAAATTGCAC 57.726 42.857 0.00 0.00 0.00 4.57
509 526 2.880890 AGCGAGTGAGAAAAATTGCACT 59.119 40.909 0.00 0.00 43.67 4.40
608 628 0.176680 AATCGTGAGGCAATCGAGCT 59.823 50.000 0.00 0.00 37.04 4.09
718 746 3.059868 TCGTGCATCGTTTTTCTCTCAAC 60.060 43.478 8.22 0.00 40.80 3.18
754 782 3.128938 GCTGCATGCATTTCTTCTCTCTT 59.871 43.478 22.97 0.00 42.31 2.85
812 873 1.303561 TCACATGCTCAACAGCCCC 60.304 57.895 0.00 0.00 46.26 5.80
1269 1440 1.292223 CTCCTGGAAGAACCGCGAA 59.708 57.895 8.23 0.00 42.61 4.70
1320 1491 0.763652 TCGACTACCTCGAGGGCTAT 59.236 55.000 34.04 16.58 46.75 2.97
1526 1712 9.938280 GGTGCCATATATACTTTAACATGTCTA 57.062 33.333 0.00 0.00 0.00 2.59
1546 1741 5.694006 GTCTAGCATGCTTGTTTCGAGATAT 59.306 40.000 28.02 0.00 0.00 1.63
2002 2224 1.842546 GTAAACGCGTGTATCCGACTC 59.157 52.381 14.98 0.00 0.00 3.36
2144 2927 0.388659 TTTGGTGACATGTGCCTTGC 59.611 50.000 1.15 0.00 42.32 4.01
2152 2935 0.244450 CATGTGCCTTGCCGATTTGT 59.756 50.000 0.00 0.00 0.00 2.83
2153 2936 0.968405 ATGTGCCTTGCCGATTTGTT 59.032 45.000 0.00 0.00 0.00 2.83
2231 3014 5.520288 ACTTCATCATGCATCTTGTACGTAC 59.480 40.000 18.90 18.90 0.00 3.67
2232 3015 5.262588 TCATCATGCATCTTGTACGTACT 57.737 39.130 25.12 3.27 0.00 2.73
2233 3016 5.281727 TCATCATGCATCTTGTACGTACTC 58.718 41.667 25.12 1.60 0.00 2.59
2234 3017 4.041740 TCATGCATCTTGTACGTACTCC 57.958 45.455 25.12 8.58 0.00 3.85
2235 3018 3.699538 TCATGCATCTTGTACGTACTCCT 59.300 43.478 25.12 6.12 0.00 3.69
2236 3019 4.159693 TCATGCATCTTGTACGTACTCCTT 59.840 41.667 25.12 6.63 0.00 3.36
2237 3020 4.106029 TGCATCTTGTACGTACTCCTTC 57.894 45.455 25.12 11.20 0.00 3.46
2238 3021 3.119245 TGCATCTTGTACGTACTCCTTCC 60.119 47.826 25.12 11.06 0.00 3.46
2239 3022 3.119245 GCATCTTGTACGTACTCCTTCCA 60.119 47.826 25.12 1.43 0.00 3.53
2240 3023 4.441634 GCATCTTGTACGTACTCCTTCCAT 60.442 45.833 25.12 6.24 0.00 3.41
2241 3024 5.661458 CATCTTGTACGTACTCCTTCCATT 58.339 41.667 25.12 0.00 0.00 3.16
2242 3025 5.320549 TCTTGTACGTACTCCTTCCATTC 57.679 43.478 25.12 0.00 0.00 2.67
2243 3026 4.159135 TCTTGTACGTACTCCTTCCATTCC 59.841 45.833 25.12 0.00 0.00 3.01
2244 3027 3.433343 TGTACGTACTCCTTCCATTCCA 58.567 45.455 25.12 0.00 0.00 3.53
2245 3028 3.194116 TGTACGTACTCCTTCCATTCCAC 59.806 47.826 25.12 0.00 0.00 4.02
2246 3029 2.253610 ACGTACTCCTTCCATTCCACA 58.746 47.619 0.00 0.00 0.00 4.17
2247 3030 2.635915 ACGTACTCCTTCCATTCCACAA 59.364 45.455 0.00 0.00 0.00 3.33
2248 3031 3.000727 CGTACTCCTTCCATTCCACAAC 58.999 50.000 0.00 0.00 0.00 3.32
2249 3032 2.185004 ACTCCTTCCATTCCACAACG 57.815 50.000 0.00 0.00 0.00 4.10
2250 3033 1.420138 ACTCCTTCCATTCCACAACGT 59.580 47.619 0.00 0.00 0.00 3.99
2251 3034 2.635915 ACTCCTTCCATTCCACAACGTA 59.364 45.455 0.00 0.00 0.00 3.57
2252 3035 3.262420 CTCCTTCCATTCCACAACGTAG 58.738 50.000 0.00 0.00 0.00 3.51
2254 3037 2.742053 CCTTCCATTCCACAACGTAGTG 59.258 50.000 0.00 0.00 45.00 2.74
2255 3038 1.803334 TCCATTCCACAACGTAGTGC 58.197 50.000 0.00 0.00 45.00 4.40
2256 3039 0.802494 CCATTCCACAACGTAGTGCC 59.198 55.000 0.00 0.00 45.00 5.01
2257 3040 1.610624 CCATTCCACAACGTAGTGCCT 60.611 52.381 0.00 0.00 45.00 4.75
2258 3041 2.354303 CCATTCCACAACGTAGTGCCTA 60.354 50.000 0.00 0.00 45.00 3.93
2259 3042 3.531538 CATTCCACAACGTAGTGCCTAT 58.468 45.455 0.00 0.00 45.00 2.57
2260 3043 4.442332 CCATTCCACAACGTAGTGCCTATA 60.442 45.833 0.00 0.00 45.00 1.31
2261 3044 4.380841 TTCCACAACGTAGTGCCTATAG 57.619 45.455 0.00 0.00 45.00 1.31
2262 3045 3.623703 TCCACAACGTAGTGCCTATAGA 58.376 45.455 0.00 0.00 45.00 1.98
2263 3046 4.212716 TCCACAACGTAGTGCCTATAGAT 58.787 43.478 0.00 0.00 45.00 1.98
2264 3047 4.647853 TCCACAACGTAGTGCCTATAGATT 59.352 41.667 0.00 0.00 45.00 2.40
2265 3048 5.128171 TCCACAACGTAGTGCCTATAGATTT 59.872 40.000 0.00 0.00 45.00 2.17
2266 3049 5.815740 CCACAACGTAGTGCCTATAGATTTT 59.184 40.000 0.00 0.00 45.00 1.82
2267 3050 6.315393 CCACAACGTAGTGCCTATAGATTTTT 59.685 38.462 0.00 0.00 45.00 1.94
2268 3051 7.180079 CACAACGTAGTGCCTATAGATTTTTG 58.820 38.462 0.00 0.00 45.00 2.44
2269 3052 6.877322 ACAACGTAGTGCCTATAGATTTTTGT 59.123 34.615 0.00 0.00 45.00 2.83
2270 3053 6.903883 ACGTAGTGCCTATAGATTTTTGTG 57.096 37.500 0.00 0.00 42.51 3.33
2271 3054 6.636705 ACGTAGTGCCTATAGATTTTTGTGA 58.363 36.000 0.00 0.00 42.51 3.58
2272 3055 7.101054 ACGTAGTGCCTATAGATTTTTGTGAA 58.899 34.615 0.00 0.00 42.51 3.18
2273 3056 7.604927 ACGTAGTGCCTATAGATTTTTGTGAAA 59.395 33.333 0.00 0.00 42.51 2.69
2274 3057 8.116753 CGTAGTGCCTATAGATTTTTGTGAAAG 58.883 37.037 0.00 0.00 0.00 2.62
2275 3058 8.947115 GTAGTGCCTATAGATTTTTGTGAAAGT 58.053 33.333 0.00 0.00 0.00 2.66
2276 3059 8.409358 AGTGCCTATAGATTTTTGTGAAAGTT 57.591 30.769 0.00 0.00 0.00 2.66
2277 3060 9.515226 AGTGCCTATAGATTTTTGTGAAAGTTA 57.485 29.630 0.00 0.00 0.00 2.24
2290 3073 9.921637 TTTTGTGAAAGTTAAACTTCATCAACT 57.078 25.926 4.32 0.00 37.47 3.16
2291 3074 9.921637 TTTGTGAAAGTTAAACTTCATCAACTT 57.078 25.926 4.32 0.00 41.67 2.66
2293 3076 9.352784 TGTGAAAGTTAAACTTCATCAACTTTG 57.647 29.630 14.10 0.00 46.05 2.77
2294 3077 9.567848 GTGAAAGTTAAACTTCATCAACTTTGA 57.432 29.630 14.10 5.22 46.05 2.69
2299 3082 9.956720 AGTTAAACTTCATCAACTTTGATCAAG 57.043 29.630 12.52 12.52 46.93 3.02
2307 3090 9.942850 TTCATCAACTTTGATCAAGTGTATAGA 57.057 29.630 8.41 10.58 45.77 1.98
2308 3091 9.591792 TCATCAACTTTGATCAAGTGTATAGAG 57.408 33.333 8.41 3.25 45.77 2.43
2309 3092 9.591792 CATCAACTTTGATCAAGTGTATAGAGA 57.408 33.333 8.41 6.59 45.77 3.10
2311 3094 9.996554 TCAACTTTGATCAAGTGTATAGAGAAA 57.003 29.630 8.41 0.00 45.77 2.52
2316 3099 9.778741 TTTGATCAAGTGTATAGAGAAAACTGT 57.221 29.630 8.41 0.00 0.00 3.55
2317 3100 8.988064 TGATCAAGTGTATAGAGAAAACTGTC 57.012 34.615 0.00 0.00 0.00 3.51
2318 3101 8.807118 TGATCAAGTGTATAGAGAAAACTGTCT 58.193 33.333 0.00 0.00 0.00 3.41
2321 3104 9.074576 TCAAGTGTATAGAGAAAACTGTCTACA 57.925 33.333 0.00 0.00 0.00 2.74
2322 3105 9.862371 CAAGTGTATAGAGAAAACTGTCTACAT 57.138 33.333 0.00 0.00 0.00 2.29
2324 3107 9.469097 AGTGTATAGAGAAAACTGTCTACATCT 57.531 33.333 0.00 0.00 0.00 2.90
2332 3115 9.303537 GAGAAAACTGTCTACATCTACAATACC 57.696 37.037 0.00 0.00 0.00 2.73
2333 3116 8.812972 AGAAAACTGTCTACATCTACAATACCA 58.187 33.333 0.00 0.00 0.00 3.25
2334 3117 9.431887 GAAAACTGTCTACATCTACAATACCAA 57.568 33.333 0.00 0.00 0.00 3.67
2335 3118 9.787435 AAAACTGTCTACATCTACAATACCAAA 57.213 29.630 0.00 0.00 0.00 3.28
2336 3119 8.773404 AACTGTCTACATCTACAATACCAAAC 57.227 34.615 0.00 0.00 0.00 2.93
2337 3120 7.903145 ACTGTCTACATCTACAATACCAAACA 58.097 34.615 0.00 0.00 0.00 2.83
2338 3121 8.540388 ACTGTCTACATCTACAATACCAAACAT 58.460 33.333 0.00 0.00 0.00 2.71
2339 3122 8.716646 TGTCTACATCTACAATACCAAACATG 57.283 34.615 0.00 0.00 0.00 3.21
2340 3123 8.318412 TGTCTACATCTACAATACCAAACATGT 58.682 33.333 0.00 0.00 0.00 3.21
2341 3124 9.811995 GTCTACATCTACAATACCAAACATGTA 57.188 33.333 0.00 0.00 0.00 2.29
2342 3125 9.811995 TCTACATCTACAATACCAAACATGTAC 57.188 33.333 0.00 0.00 0.00 2.90
2343 3126 9.594478 CTACATCTACAATACCAAACATGTACA 57.406 33.333 0.00 0.00 0.00 2.90
2345 3128 9.461312 ACATCTACAATACCAAACATGTACATT 57.539 29.630 5.37 0.00 0.00 2.71
2346 3129 9.935682 CATCTACAATACCAAACATGTACATTC 57.064 33.333 5.37 0.00 0.00 2.67
2347 3130 9.905713 ATCTACAATACCAAACATGTACATTCT 57.094 29.630 5.37 0.00 0.00 2.40
2348 3131 9.161629 TCTACAATACCAAACATGTACATTCTG 57.838 33.333 5.37 0.00 0.00 3.02
2349 3132 7.994425 ACAATACCAAACATGTACATTCTGA 57.006 32.000 5.37 0.00 0.00 3.27
2350 3133 8.402798 ACAATACCAAACATGTACATTCTGAA 57.597 30.769 5.37 0.00 0.00 3.02
2351 3134 8.855110 ACAATACCAAACATGTACATTCTGAAA 58.145 29.630 5.37 0.00 0.00 2.69
2352 3135 9.689976 CAATACCAAACATGTACATTCTGAAAA 57.310 29.630 5.37 0.00 0.00 2.29
2364 3147 9.863845 TGTACATTCTGAAAATATAACTCACGA 57.136 29.630 0.00 0.00 0.00 4.35
2367 3150 9.383519 ACATTCTGAAAATATAACTCACGATGT 57.616 29.630 0.00 0.00 0.00 3.06
2371 3154 9.692749 TCTGAAAATATAACTCACGATGTATCC 57.307 33.333 0.00 0.00 0.00 2.59
2372 3155 9.476202 CTGAAAATATAACTCACGATGTATCCA 57.524 33.333 0.00 0.00 0.00 3.41
2373 3156 9.825109 TGAAAATATAACTCACGATGTATCCAA 57.175 29.630 0.00 0.00 0.00 3.53
2376 3159 9.996554 AAATATAACTCACGATGTATCCAATGA 57.003 29.630 0.00 0.00 0.00 2.57
2378 3161 7.895975 ATAACTCACGATGTATCCAATGATG 57.104 36.000 0.00 0.00 32.18 3.07
2379 3162 5.282055 ACTCACGATGTATCCAATGATGT 57.718 39.130 0.00 0.00 32.18 3.06
2380 3163 5.052481 ACTCACGATGTATCCAATGATGTG 58.948 41.667 0.00 0.00 32.18 3.21
2381 3164 3.809279 TCACGATGTATCCAATGATGTGC 59.191 43.478 0.00 0.00 32.18 4.57
2382 3165 3.560896 CACGATGTATCCAATGATGTGCA 59.439 43.478 0.00 0.00 32.18 4.57
2383 3166 4.214758 CACGATGTATCCAATGATGTGCAT 59.785 41.667 0.00 0.00 39.43 3.96
2385 3168 5.300034 ACGATGTATCCAATGATGTGCATTT 59.700 36.000 0.00 0.00 44.68 2.32
2386 3169 5.854866 CGATGTATCCAATGATGTGCATTTC 59.145 40.000 0.00 0.00 44.68 2.17
2387 3170 5.172460 TGTATCCAATGATGTGCATTTCG 57.828 39.130 0.00 0.00 44.68 3.46
2388 3171 4.639755 TGTATCCAATGATGTGCATTTCGT 59.360 37.500 0.00 0.00 44.68 3.85
2389 3172 5.819901 TGTATCCAATGATGTGCATTTCGTA 59.180 36.000 0.00 0.00 44.68 3.43
2390 3173 4.880886 TCCAATGATGTGCATTTCGTAG 57.119 40.909 0.00 0.00 44.68 3.51
2391 3174 4.260985 TCCAATGATGTGCATTTCGTAGT 58.739 39.130 0.00 0.00 44.68 2.73
2392 3175 4.332543 TCCAATGATGTGCATTTCGTAGTC 59.667 41.667 0.00 0.00 44.68 2.59
2393 3176 4.333649 CCAATGATGTGCATTTCGTAGTCT 59.666 41.667 0.00 0.00 44.68 3.24
2394 3177 5.523552 CCAATGATGTGCATTTCGTAGTCTA 59.476 40.000 0.00 0.00 44.68 2.59
2395 3178 6.292542 CCAATGATGTGCATTTCGTAGTCTAG 60.293 42.308 0.00 0.00 44.68 2.43
2396 3179 5.576447 TGATGTGCATTTCGTAGTCTAGA 57.424 39.130 0.00 0.00 0.00 2.43
2397 3180 6.149129 TGATGTGCATTTCGTAGTCTAGAT 57.851 37.500 0.00 0.00 0.00 1.98
2398 3181 5.979517 TGATGTGCATTTCGTAGTCTAGATG 59.020 40.000 0.00 0.00 0.00 2.90
2399 3182 5.324784 TGTGCATTTCGTAGTCTAGATGT 57.675 39.130 0.00 0.00 0.00 3.06
2400 3183 6.445357 TGTGCATTTCGTAGTCTAGATGTA 57.555 37.500 0.00 0.00 0.00 2.29
2401 3184 6.263344 TGTGCATTTCGTAGTCTAGATGTAC 58.737 40.000 0.00 0.43 32.91 2.90
2402 3185 5.686397 GTGCATTTCGTAGTCTAGATGTACC 59.314 44.000 0.00 0.00 0.00 3.34
2403 3186 5.593095 TGCATTTCGTAGTCTAGATGTACCT 59.407 40.000 0.00 0.00 0.00 3.08
2404 3187 6.769341 TGCATTTCGTAGTCTAGATGTACCTA 59.231 38.462 0.00 0.00 0.00 3.08
2405 3188 7.283807 TGCATTTCGTAGTCTAGATGTACCTAA 59.716 37.037 0.00 0.00 0.00 2.69
2406 3189 8.298140 GCATTTCGTAGTCTAGATGTACCTAAT 58.702 37.037 0.00 0.91 0.00 1.73
2411 3194 9.624373 TCGTAGTCTAGATGTACCTAATTTTCT 57.376 33.333 0.00 0.00 0.00 2.52
2412 3195 9.881529 CGTAGTCTAGATGTACCTAATTTTCTC 57.118 37.037 0.00 0.00 0.00 2.87
2442 3225 9.912634 AGATATGGTCAAAGTTTGTAATGTTTG 57.087 29.630 15.08 0.00 0.00 2.93
2443 3226 9.906660 GATATGGTCAAAGTTTGTAATGTTTGA 57.093 29.630 15.08 0.00 36.74 2.69
2450 3233 8.439286 TCAAAGTTTGTAATGTTTGACTTTTGC 58.561 29.630 15.08 0.00 35.75 3.68
2451 3234 7.897575 AAGTTTGTAATGTTTGACTTTTGCA 57.102 28.000 0.00 0.00 0.00 4.08
2452 3235 7.897575 AGTTTGTAATGTTTGACTTTTGCAA 57.102 28.000 0.00 0.00 0.00 4.08
2453 3236 8.316640 AGTTTGTAATGTTTGACTTTTGCAAA 57.683 26.923 8.05 8.05 33.22 3.68
2454 3237 8.778358 AGTTTGTAATGTTTGACTTTTGCAAAA 58.222 25.926 22.61 22.61 37.03 2.44
2455 3238 9.387123 GTTTGTAATGTTTGACTTTTGCAAAAA 57.613 25.926 23.92 8.29 37.03 1.94
2457 3240 9.766277 TTGTAATGTTTGACTTTTGCAAAAATC 57.234 25.926 22.90 22.90 37.03 2.17
2458 3241 9.160496 TGTAATGTTTGACTTTTGCAAAAATCT 57.840 25.926 27.69 13.35 37.03 2.40
2464 3247 9.797473 GTTTGACTTTTGCAAAAATCTATAAGC 57.203 29.630 27.69 15.53 37.03 3.09
2465 3248 9.539825 TTTGACTTTTGCAAAAATCTATAAGCA 57.460 25.926 27.69 9.19 32.75 3.91
2466 3249 8.519492 TGACTTTTGCAAAAATCTATAAGCAC 57.481 30.769 27.69 12.13 0.00 4.40
2467 3250 8.359642 TGACTTTTGCAAAAATCTATAAGCACT 58.640 29.630 27.69 0.83 0.00 4.40
2468 3251 9.840427 GACTTTTGCAAAAATCTATAAGCACTA 57.160 29.630 22.52 0.00 0.00 2.74
2469 3252 9.626045 ACTTTTGCAAAAATCTATAAGCACTAC 57.374 29.630 23.92 0.00 0.00 2.73
2470 3253 9.624697 CTTTTGCAAAAATCTATAAGCACTACA 57.375 29.630 23.92 0.00 0.00 2.74
2478 3261 9.573166 AAAATCTATAAGCACTACATTATGGCA 57.427 29.630 0.00 0.00 0.00 4.92
2479 3262 8.553459 AATCTATAAGCACTACATTATGGCAC 57.447 34.615 0.00 0.00 0.00 5.01
2480 3263 6.156519 TCTATAAGCACTACATTATGGCACG 58.843 40.000 0.00 0.00 0.00 5.34
2481 3264 1.953559 AGCACTACATTATGGCACGG 58.046 50.000 0.00 0.00 0.00 4.94
2482 3265 1.484653 AGCACTACATTATGGCACGGA 59.515 47.619 0.00 0.00 0.00 4.69
2483 3266 2.104792 AGCACTACATTATGGCACGGAT 59.895 45.455 0.00 0.00 0.00 4.18
2484 3267 2.224079 GCACTACATTATGGCACGGATG 59.776 50.000 0.00 0.00 0.00 3.51
2485 3268 2.807967 CACTACATTATGGCACGGATGG 59.192 50.000 10.20 0.00 0.00 3.51
2486 3269 2.703536 ACTACATTATGGCACGGATGGA 59.296 45.455 10.20 2.48 0.00 3.41
2591 3380 6.452494 AAGTACACTAGACGCAATCAGTAT 57.548 37.500 0.00 0.00 0.00 2.12
2617 3831 0.110373 CGCCTTGACTTTTACCGCAC 60.110 55.000 0.00 0.00 0.00 5.34
2649 4055 8.443898 TTTATACGCGTCACTCAATCATATAC 57.556 34.615 18.63 0.00 0.00 1.47
2650 4056 4.569761 ACGCGTCACTCAATCATATACT 57.430 40.909 5.58 0.00 0.00 2.12
2651 4057 4.537965 ACGCGTCACTCAATCATATACTC 58.462 43.478 5.58 0.00 0.00 2.59
2652 4058 3.914966 CGCGTCACTCAATCATATACTCC 59.085 47.826 0.00 0.00 0.00 3.85
2653 4059 4.238514 GCGTCACTCAATCATATACTCCC 58.761 47.826 0.00 0.00 0.00 4.30
2654 4060 4.021894 GCGTCACTCAATCATATACTCCCT 60.022 45.833 0.00 0.00 0.00 4.20
2655 4061 5.704888 CGTCACTCAATCATATACTCCCTC 58.295 45.833 0.00 0.00 0.00 4.30
2656 4062 5.336055 CGTCACTCAATCATATACTCCCTCC 60.336 48.000 0.00 0.00 0.00 4.30
2657 4063 4.767409 TCACTCAATCATATACTCCCTCCG 59.233 45.833 0.00 0.00 0.00 4.63
2658 4064 4.524714 CACTCAATCATATACTCCCTCCGT 59.475 45.833 0.00 0.00 0.00 4.69
2659 4065 5.011125 CACTCAATCATATACTCCCTCCGTT 59.989 44.000 0.00 0.00 0.00 4.44
2660 4066 6.208797 CACTCAATCATATACTCCCTCCGTTA 59.791 42.308 0.00 0.00 0.00 3.18
2661 4067 6.781014 ACTCAATCATATACTCCCTCCGTTAA 59.219 38.462 0.00 0.00 0.00 2.01
2662 4068 7.289317 ACTCAATCATATACTCCCTCCGTTAAA 59.711 37.037 0.00 0.00 0.00 1.52
2663 4069 7.667557 TCAATCATATACTCCCTCCGTTAAAG 58.332 38.462 0.00 0.00 0.00 1.85
2664 4070 7.289317 TCAATCATATACTCCCTCCGTTAAAGT 59.711 37.037 0.00 0.00 0.00 2.66
2665 4071 7.613551 ATCATATACTCCCTCCGTTAAAGTT 57.386 36.000 0.00 0.00 0.00 2.66
2666 4072 8.716674 ATCATATACTCCCTCCGTTAAAGTTA 57.283 34.615 0.00 0.00 0.00 2.24
2667 4073 8.174733 TCATATACTCCCTCCGTTAAAGTTAG 57.825 38.462 0.00 0.00 0.00 2.34
2668 4074 7.781693 TCATATACTCCCTCCGTTAAAGTTAGT 59.218 37.037 0.00 0.00 0.00 2.24
2669 4075 9.071276 CATATACTCCCTCCGTTAAAGTTAGTA 57.929 37.037 0.00 0.00 0.00 1.82
2670 4076 5.651387 ACTCCCTCCGTTAAAGTTAGTAC 57.349 43.478 0.00 0.00 0.00 2.73
2671 4077 5.079643 ACTCCCTCCGTTAAAGTTAGTACA 58.920 41.667 0.00 0.00 0.00 2.90
2672 4078 5.539955 ACTCCCTCCGTTAAAGTTAGTACAA 59.460 40.000 0.00 0.00 0.00 2.41
2673 4079 6.041979 ACTCCCTCCGTTAAAGTTAGTACAAA 59.958 38.462 0.00 0.00 0.00 2.83
2674 4080 6.458210 TCCCTCCGTTAAAGTTAGTACAAAG 58.542 40.000 0.00 0.00 0.00 2.77
2675 4081 6.041979 TCCCTCCGTTAAAGTTAGTACAAAGT 59.958 38.462 0.00 0.00 0.00 2.66
2676 4082 6.707608 CCCTCCGTTAAAGTTAGTACAAAGTT 59.292 38.462 0.00 0.00 0.00 2.66
2677 4083 7.307573 CCCTCCGTTAAAGTTAGTACAAAGTTG 60.308 40.741 0.00 0.00 0.00 3.16
2678 4084 7.439056 CCTCCGTTAAAGTTAGTACAAAGTTGA 59.561 37.037 0.00 0.00 0.00 3.18
2679 4085 8.356533 TCCGTTAAAGTTAGTACAAAGTTGAG 57.643 34.615 0.00 0.00 0.00 3.02
2680 4086 7.981225 TCCGTTAAAGTTAGTACAAAGTTGAGT 59.019 33.333 0.00 0.00 0.00 3.41
2681 4087 8.606602 CCGTTAAAGTTAGTACAAAGTTGAGTT 58.393 33.333 0.00 0.00 0.00 3.01
2773 4262 4.949856 ACAAAGATTATCTGCCGTTCCAAT 59.050 37.500 0.00 0.00 0.00 3.16
2796 4286 4.573201 TCGAACCTTCCAAACTAACTGTTG 59.427 41.667 2.69 0.00 39.13 3.33
2807 4307 3.359033 ACTAACTGTTGGCATGCATGAT 58.641 40.909 30.64 7.28 0.00 2.45
2812 4312 1.624312 TGTTGGCATGCATGATTGGTT 59.376 42.857 30.64 0.00 0.00 3.67
2843 4499 7.993758 GCTTCCTTAAAACATAATACTCCCTCT 59.006 37.037 0.00 0.00 0.00 3.69
3057 5123 1.271840 GGGTGGTGCCATCCTACTCA 61.272 60.000 13.09 0.00 43.62 3.41
3322 5503 2.560504 TCACAATCTGACAGCAACGTT 58.439 42.857 0.00 0.00 0.00 3.99
3757 6080 6.005823 CCAAGCCTCCAACATATATGAATCA 58.994 40.000 19.63 0.00 0.00 2.57
3770 6093 2.362169 TGAATCAATCGACGCTGACA 57.638 45.000 0.00 0.00 0.00 3.58
3785 6109 4.626604 ACGCTGACATGCAATTTATTTTGG 59.373 37.500 0.00 0.00 0.00 3.28
3786 6110 4.492895 CGCTGACATGCAATTTATTTTGGC 60.493 41.667 0.00 0.00 0.00 4.52
3787 6111 4.392445 GCTGACATGCAATTTATTTTGGCA 59.608 37.500 0.00 0.00 0.00 4.92
4171 6499 2.632377 ACAACCTCCGCATCAATACAG 58.368 47.619 0.00 0.00 0.00 2.74
4188 6516 4.559229 GGCGGCCGAGTACGTACC 62.559 72.222 33.48 14.56 37.88 3.34
4314 6664 7.766738 TGCAATAAGATTCGTTATTCCTGTACA 59.233 33.333 0.00 0.00 31.49 2.90
4315 6665 8.774586 GCAATAAGATTCGTTATTCCTGTACAT 58.225 33.333 0.00 0.00 31.49 2.29
4348 6698 9.745018 ATTACTACTACAGTGTGTAAGTCCTTA 57.255 33.333 5.88 0.00 38.24 2.69
4367 6717 6.153680 GTCCTTAGGGATCGATGATGACTAAT 59.846 42.308 0.54 0.00 44.33 1.73
4428 6783 1.148310 CATGTGAACCGAAGAAGCGT 58.852 50.000 0.00 0.00 0.00 5.07
4455 6810 2.181521 GGACTCGCGACCTCGATCT 61.182 63.158 3.71 0.00 43.02 2.75
4474 6829 2.684735 GGAGGTCTCGTCTCCCCT 59.315 66.667 0.00 0.00 43.71 4.79
4481 6836 4.671590 TCGTCTCCCCTGCGACCA 62.672 66.667 0.00 0.00 0.00 4.02
4482 6837 4.436998 CGTCTCCCCTGCGACCAC 62.437 72.222 0.00 0.00 0.00 4.16
4483 6838 3.311110 GTCTCCCCTGCGACCACA 61.311 66.667 0.00 0.00 0.00 4.17
4485 6840 2.046892 CTCCCCTGCGACCACAAG 60.047 66.667 0.00 0.00 0.00 3.16
4486 6841 2.525629 TCCCCTGCGACCACAAGA 60.526 61.111 0.00 0.00 0.00 3.02
4487 6842 1.903877 CTCCCCTGCGACCACAAGAT 61.904 60.000 0.00 0.00 0.00 2.40
4488 6843 1.450312 CCCCTGCGACCACAAGATC 60.450 63.158 0.00 0.00 0.00 2.75
4489 6844 1.811266 CCCTGCGACCACAAGATCG 60.811 63.158 0.00 0.00 41.32 3.69
4490 6845 1.215382 CCTGCGACCACAAGATCGA 59.785 57.895 0.00 0.00 40.86 3.59
4491 6846 0.179100 CCTGCGACCACAAGATCGAT 60.179 55.000 0.00 0.00 40.86 3.59
4492 6847 1.203928 CTGCGACCACAAGATCGATC 58.796 55.000 17.91 17.91 40.86 3.69
4499 6854 3.993081 GACCACAAGATCGATCATGGATC 59.007 47.826 33.06 25.17 40.45 3.36
4543 6898 0.741326 TCGAGGAGCATGTAGACTGC 59.259 55.000 0.00 0.00 39.97 4.40
4680 7035 8.899427 TGCAATGAAATTCCTCATTTTGTTTA 57.101 26.923 3.13 0.00 42.16 2.01
4714 7069 4.618489 GCAAATGACATTCTGGTTCTTTCG 59.382 41.667 0.05 0.00 0.00 3.46
4715 7070 5.562696 GCAAATGACATTCTGGTTCTTTCGA 60.563 40.000 0.05 0.00 0.00 3.71
4718 7073 2.412089 GACATTCTGGTTCTTTCGACCG 59.588 50.000 0.00 0.00 40.13 4.79
4752 7107 6.552008 AGGGTTTCCTCATCACTTTTTATCA 58.448 36.000 0.00 0.00 39.80 2.15
4758 7113 5.874810 TCCTCATCACTTTTTATCAGTTCGG 59.125 40.000 0.00 0.00 0.00 4.30
4759 7114 5.447818 CCTCATCACTTTTTATCAGTTCGGC 60.448 44.000 0.00 0.00 0.00 5.54
4780 7135 5.669477 GGCCATTTGTGCCTTTATATTTCA 58.331 37.500 0.00 0.00 45.70 2.69
4789 7144 3.704061 GCCTTTATATTTCAAGGGGTGCA 59.296 43.478 9.11 0.00 40.16 4.57
4794 7149 6.926630 TTATATTTCAAGGGGTGCAAAAGT 57.073 33.333 0.00 0.00 0.00 2.66
4797 7152 1.691196 TCAAGGGGTGCAAAAGTCTG 58.309 50.000 0.00 0.00 0.00 3.51
4800 7155 2.159179 AGGGGTGCAAAAGTCTGTTT 57.841 45.000 0.00 0.00 0.00 2.83
4801 7156 2.466846 AGGGGTGCAAAAGTCTGTTTT 58.533 42.857 0.00 0.00 0.00 2.43
4839 7194 0.920664 GTTGGCGTGTGTTTTCTTGC 59.079 50.000 0.00 0.00 0.00 4.01
4938 7293 5.428253 AGAAGTGTAGAGAAACAAAGTGCA 58.572 37.500 0.00 0.00 0.00 4.57
4960 7315 9.017669 GTGCAAATGAATCTCTGTATGATTTTC 57.982 33.333 0.00 0.00 34.67 2.29
4973 7328 6.918626 TGTATGATTTTCGAAATGAGGCAAA 58.081 32.000 12.12 0.00 0.00 3.68
5003 7358 7.627340 TGTCATTTTCGTTGACTAAGAAGAAC 58.373 34.615 5.52 0.00 43.12 3.01
5011 7366 5.332656 CGTTGACTAAGAAGAACAGAGTTGC 60.333 44.000 0.00 0.00 0.00 4.17
5012 7367 4.632153 TGACTAAGAAGAACAGAGTTGCC 58.368 43.478 0.00 0.00 0.00 4.52
5023 7378 6.485171 AGAACAGAGTTGCCAGGTTAATTAT 58.515 36.000 0.00 0.00 0.00 1.28
5024 7379 6.375455 AGAACAGAGTTGCCAGGTTAATTATG 59.625 38.462 0.00 0.00 0.00 1.90
5025 7380 5.570320 ACAGAGTTGCCAGGTTAATTATGT 58.430 37.500 0.00 0.00 0.00 2.29
5026 7381 6.010219 ACAGAGTTGCCAGGTTAATTATGTT 58.990 36.000 0.00 0.00 0.00 2.71
5028 7383 7.336931 ACAGAGTTGCCAGGTTAATTATGTTAG 59.663 37.037 0.00 0.00 0.00 2.34
5030 7385 7.770897 AGAGTTGCCAGGTTAATTATGTTAGAG 59.229 37.037 0.00 0.00 0.00 2.43
5032 7387 7.888546 AGTTGCCAGGTTAATTATGTTAGAGTT 59.111 33.333 0.00 0.00 0.00 3.01
5033 7388 9.169592 GTTGCCAGGTTAATTATGTTAGAGTTA 57.830 33.333 0.00 0.00 0.00 2.24
5034 7389 9.914834 TTGCCAGGTTAATTATGTTAGAGTTAT 57.085 29.630 0.00 0.00 0.00 1.89
5066 7421 7.287810 AGTCATGTACCCCTTTGTATTTATCC 58.712 38.462 0.00 0.00 0.00 2.59
5067 7422 6.489022 GTCATGTACCCCTTTGTATTTATCCC 59.511 42.308 0.00 0.00 0.00 3.85
5068 7423 5.038651 TGTACCCCTTTGTATTTATCCCG 57.961 43.478 0.00 0.00 0.00 5.14
5070 7425 4.596354 ACCCCTTTGTATTTATCCCGTT 57.404 40.909 0.00 0.00 0.00 4.44
5071 7426 4.274978 ACCCCTTTGTATTTATCCCGTTG 58.725 43.478 0.00 0.00 0.00 4.10
5072 7427 4.264038 ACCCCTTTGTATTTATCCCGTTGT 60.264 41.667 0.00 0.00 0.00 3.32
5074 7429 6.066032 CCCCTTTGTATTTATCCCGTTGTAT 58.934 40.000 0.00 0.00 0.00 2.29
5075 7430 7.147337 ACCCCTTTGTATTTATCCCGTTGTATA 60.147 37.037 0.00 0.00 0.00 1.47
5076 7431 7.720515 CCCCTTTGTATTTATCCCGTTGTATAA 59.279 37.037 0.00 0.00 0.00 0.98
5077 7432 8.780249 CCCTTTGTATTTATCCCGTTGTATAAG 58.220 37.037 0.00 0.00 0.00 1.73
5078 7433 8.780249 CCTTTGTATTTATCCCGTTGTATAAGG 58.220 37.037 0.00 0.00 0.00 2.69
5079 7434 8.680039 TTTGTATTTATCCCGTTGTATAAGGG 57.320 34.615 4.10 4.10 46.40 3.95
5096 7451 3.018423 AGGGGTTTCCTGCATATGTTC 57.982 47.619 4.29 0.00 46.07 3.18
5098 7453 2.622977 GGGGTTTCCTGCATATGTTCCA 60.623 50.000 4.29 0.00 0.00 3.53
5099 7454 2.427095 GGGTTTCCTGCATATGTTCCAC 59.573 50.000 4.29 0.00 0.00 4.02
5101 7456 3.119495 GGTTTCCTGCATATGTTCCACAC 60.119 47.826 4.29 0.00 0.00 3.82
5102 7457 2.418368 TCCTGCATATGTTCCACACC 57.582 50.000 4.29 0.00 0.00 4.16
5104 7459 2.019249 CCTGCATATGTTCCACACCTG 58.981 52.381 4.29 0.00 0.00 4.00
5105 7460 2.618816 CCTGCATATGTTCCACACCTGT 60.619 50.000 4.29 0.00 0.00 4.00
5108 7463 3.008485 TGCATATGTTCCACACCTGTACA 59.992 43.478 4.29 0.00 0.00 2.90
5109 7464 4.199310 GCATATGTTCCACACCTGTACAT 58.801 43.478 4.29 0.00 34.18 2.29
5110 7465 4.035558 GCATATGTTCCACACCTGTACATG 59.964 45.833 4.29 0.00 32.23 3.21
5112 7467 4.901197 ATGTTCCACACCTGTACATGTA 57.099 40.909 0.08 0.08 0.00 2.29
5113 7468 4.901197 TGTTCCACACCTGTACATGTAT 57.099 40.909 9.18 0.00 0.00 2.29
5116 7471 7.663043 TGTTCCACACCTGTACATGTATATA 57.337 36.000 9.18 0.00 0.00 0.86
5117 7472 8.257602 TGTTCCACACCTGTACATGTATATAT 57.742 34.615 9.18 0.00 0.00 0.86
5121 7476 8.899771 TCCACACCTGTACATGTATATATATCG 58.100 37.037 9.18 0.00 0.00 2.92
5122 7477 8.135529 CCACACCTGTACATGTATATATATCGG 58.864 40.741 9.18 5.41 0.00 4.18
5123 7478 7.648112 CACACCTGTACATGTATATATATCGGC 59.352 40.741 9.18 0.00 0.00 5.54
5124 7479 7.145985 CACCTGTACATGTATATATATCGGCC 58.854 42.308 9.18 0.00 0.00 6.13
5125 7480 7.014326 CACCTGTACATGTATATATATCGGCCT 59.986 40.741 9.18 0.00 0.00 5.19
5126 7481 8.222637 ACCTGTACATGTATATATATCGGCCTA 58.777 37.037 9.18 0.00 0.00 3.93
5127 7482 9.244292 CCTGTACATGTATATATATCGGCCTAT 57.756 37.037 9.18 0.00 0.00 2.57
5129 7484 9.020731 TGTACATGTATATATATCGGCCTATGG 57.979 37.037 9.18 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 131 3.434637 GTGCCAAACATTATTGCCTACG 58.565 45.455 0.00 0.00 0.00 3.51
129 135 1.406751 GGGGTGCCAAACATTATTGCC 60.407 52.381 0.00 0.00 0.00 4.52
130 136 1.277557 TGGGGTGCCAAACATTATTGC 59.722 47.619 0.00 0.00 0.00 3.56
131 137 3.451902 AGATGGGGTGCCAAACATTATTG 59.548 43.478 0.00 0.00 0.00 1.90
132 138 3.723325 AGATGGGGTGCCAAACATTATT 58.277 40.909 0.00 0.00 0.00 1.40
183 189 2.449464 CATGCCACAAATCCTCTCCAA 58.551 47.619 0.00 0.00 0.00 3.53
226 234 7.222000 AGTTAAAAATAAAAGCATGTCGGGA 57.778 32.000 0.00 0.00 0.00 5.14
227 235 7.883229 AAGTTAAAAATAAAAGCATGTCGGG 57.117 32.000 0.00 0.00 0.00 5.14
302 311 8.024146 TCGTCGAGAAACATGAATATGAAAAA 57.976 30.769 0.00 0.00 37.73 1.94
478 495 2.413837 TCTCACTCGCTTTTACCAAGC 58.586 47.619 0.00 0.00 39.77 4.01
522 539 4.742438 TCGGTTGTTGAAACTTATGAGC 57.258 40.909 0.00 0.00 0.00 4.26
732 760 2.683867 AGAGAGAAGAAATGCATGCAGC 59.316 45.455 26.69 17.07 45.96 5.25
812 873 1.873591 GCGAGGCCTGGTGTATTTATG 59.126 52.381 12.00 0.00 0.00 1.90
1503 1674 9.653287 TGCTAGACATGTTAAAGTATATATGGC 57.347 33.333 0.00 0.00 0.00 4.40
1526 1712 5.824904 AAATATCTCGAAACAAGCATGCT 57.175 34.783 16.30 16.30 0.00 3.79
1546 1741 6.433716 TGAATTGATCTGAACATGGTGCTAAA 59.566 34.615 0.00 0.00 0.00 1.85
1912 2120 6.493166 TCCATTTGTCCATGTTTTAGGAGAT 58.507 36.000 0.00 0.00 33.85 2.75
2002 2224 3.568538 AGCTTAGCATGTTCTTTTTGCG 58.431 40.909 7.07 0.00 41.22 4.85
2072 2319 1.303309 GAATGATGGGACGCTTCCAG 58.697 55.000 11.89 0.00 44.98 3.86
2152 2935 5.072736 TCTGGACCATAGTATCCGACTCTAA 59.927 44.000 0.00 0.00 39.81 2.10
2153 2936 4.596212 TCTGGACCATAGTATCCGACTCTA 59.404 45.833 0.00 0.00 39.81 2.43
2231 3014 2.185004 ACGTTGTGGAATGGAAGGAG 57.815 50.000 0.00 0.00 0.00 3.69
2232 3015 2.635915 ACTACGTTGTGGAATGGAAGGA 59.364 45.455 0.73 0.00 0.00 3.36
2233 3016 2.742053 CACTACGTTGTGGAATGGAAGG 59.258 50.000 20.42 0.00 34.56 3.46
2234 3017 2.159627 GCACTACGTTGTGGAATGGAAG 59.840 50.000 27.13 2.31 38.31 3.46
2235 3018 2.147958 GCACTACGTTGTGGAATGGAA 58.852 47.619 27.13 0.00 38.31 3.53
2236 3019 1.609580 GGCACTACGTTGTGGAATGGA 60.610 52.381 27.13 0.00 38.31 3.41
2237 3020 0.802494 GGCACTACGTTGTGGAATGG 59.198 55.000 27.13 5.53 38.31 3.16
2238 3021 1.808411 AGGCACTACGTTGTGGAATG 58.192 50.000 27.13 6.27 36.02 2.67
2251 3034 8.409358 AACTTTCACAAAAATCTATAGGCACT 57.591 30.769 0.00 0.00 46.37 4.40
2264 3047 9.921637 AGTTGATGAAGTTTAACTTTCACAAAA 57.078 25.926 11.88 3.04 38.80 2.44
2265 3048 9.921637 AAGTTGATGAAGTTTAACTTTCACAAA 57.078 25.926 11.88 6.96 38.80 2.83
2266 3049 9.921637 AAAGTTGATGAAGTTTAACTTTCACAA 57.078 25.926 11.88 13.71 45.18 3.33
2267 3050 9.352784 CAAAGTTGATGAAGTTTAACTTTCACA 57.647 29.630 11.88 6.04 45.18 3.58
2268 3051 9.567848 TCAAAGTTGATGAAGTTTAACTTTCAC 57.432 29.630 11.88 7.57 45.18 3.18
2273 3056 9.956720 CTTGATCAAAGTTGATGAAGTTTAACT 57.043 29.630 19.22 0.00 46.74 2.24
2290 3073 9.778741 ACAGTTTTCTCTATACACTTGATCAAA 57.221 29.630 9.88 0.00 0.00 2.69
2291 3074 9.424319 GACAGTTTTCTCTATACACTTGATCAA 57.576 33.333 8.12 8.12 0.00 2.57
2292 3075 8.807118 AGACAGTTTTCTCTATACACTTGATCA 58.193 33.333 0.00 0.00 0.00 2.92
2295 3078 9.074576 TGTAGACAGTTTTCTCTATACACTTGA 57.925 33.333 0.00 0.00 0.00 3.02
2296 3079 9.862371 ATGTAGACAGTTTTCTCTATACACTTG 57.138 33.333 0.00 0.00 0.00 3.16
2298 3081 9.469097 AGATGTAGACAGTTTTCTCTATACACT 57.531 33.333 0.00 0.00 0.00 3.55
2306 3089 9.303537 GGTATTGTAGATGTAGACAGTTTTCTC 57.696 37.037 0.00 0.00 0.00 2.87
2307 3090 8.812972 TGGTATTGTAGATGTAGACAGTTTTCT 58.187 33.333 0.00 0.00 0.00 2.52
2308 3091 8.997621 TGGTATTGTAGATGTAGACAGTTTTC 57.002 34.615 0.00 0.00 0.00 2.29
2309 3092 9.787435 TTTGGTATTGTAGATGTAGACAGTTTT 57.213 29.630 0.00 0.00 0.00 2.43
2310 3093 9.216117 GTTTGGTATTGTAGATGTAGACAGTTT 57.784 33.333 0.00 0.00 0.00 2.66
2311 3094 8.372459 TGTTTGGTATTGTAGATGTAGACAGTT 58.628 33.333 0.00 0.00 0.00 3.16
2312 3095 7.903145 TGTTTGGTATTGTAGATGTAGACAGT 58.097 34.615 0.00 0.00 0.00 3.55
2313 3096 8.820933 CATGTTTGGTATTGTAGATGTAGACAG 58.179 37.037 0.00 0.00 0.00 3.51
2314 3097 8.318412 ACATGTTTGGTATTGTAGATGTAGACA 58.682 33.333 0.00 0.00 0.00 3.41
2315 3098 8.718102 ACATGTTTGGTATTGTAGATGTAGAC 57.282 34.615 0.00 0.00 0.00 2.59
2316 3099 9.811995 GTACATGTTTGGTATTGTAGATGTAGA 57.188 33.333 2.30 0.00 0.00 2.59
2317 3100 9.594478 TGTACATGTTTGGTATTGTAGATGTAG 57.406 33.333 2.30 0.00 0.00 2.74
2319 3102 9.461312 AATGTACATGTTTGGTATTGTAGATGT 57.539 29.630 9.63 0.00 31.34 3.06
2320 3103 9.935682 GAATGTACATGTTTGGTATTGTAGATG 57.064 33.333 9.63 0.00 31.34 2.90
2321 3104 9.905713 AGAATGTACATGTTTGGTATTGTAGAT 57.094 29.630 9.63 0.00 31.99 1.98
2322 3105 9.161629 CAGAATGTACATGTTTGGTATTGTAGA 57.838 33.333 9.63 0.00 0.00 2.59
2323 3106 9.161629 TCAGAATGTACATGTTTGGTATTGTAG 57.838 33.333 9.63 0.00 37.40 2.74
2324 3107 9.508642 TTCAGAATGTACATGTTTGGTATTGTA 57.491 29.630 9.63 0.00 37.40 2.41
2325 3108 7.994425 TCAGAATGTACATGTTTGGTATTGT 57.006 32.000 9.63 0.00 37.40 2.71
2326 3109 9.689976 TTTTCAGAATGTACATGTTTGGTATTG 57.310 29.630 9.63 0.00 37.40 1.90
2338 3121 9.863845 TCGTGAGTTATATTTTCAGAATGTACA 57.136 29.630 0.00 0.00 37.40 2.90
2341 3124 9.383519 ACATCGTGAGTTATATTTTCAGAATGT 57.616 29.630 0.00 0.00 37.40 2.71
2345 3128 9.692749 GGATACATCGTGAGTTATATTTTCAGA 57.307 33.333 0.00 0.00 0.00 3.27
2346 3129 9.476202 TGGATACATCGTGAGTTATATTTTCAG 57.524 33.333 0.00 0.00 46.17 3.02
2366 3149 5.173774 ACGAAATGCACATCATTGGATAC 57.826 39.130 0.00 0.00 44.23 2.24
2367 3150 6.054941 ACTACGAAATGCACATCATTGGATA 58.945 36.000 0.00 0.00 44.23 2.59
2368 3151 4.883585 ACTACGAAATGCACATCATTGGAT 59.116 37.500 0.00 0.00 44.23 3.41
2369 3152 4.260985 ACTACGAAATGCACATCATTGGA 58.739 39.130 0.00 0.00 44.23 3.53
2370 3153 4.333649 AGACTACGAAATGCACATCATTGG 59.666 41.667 0.00 0.00 44.23 3.16
2371 3154 5.475273 AGACTACGAAATGCACATCATTG 57.525 39.130 0.00 0.00 44.23 2.82
2372 3155 6.573434 TCTAGACTACGAAATGCACATCATT 58.427 36.000 0.00 0.00 46.82 2.57
2373 3156 6.149129 TCTAGACTACGAAATGCACATCAT 57.851 37.500 0.00 0.00 36.87 2.45
2374 3157 5.576447 TCTAGACTACGAAATGCACATCA 57.424 39.130 0.00 0.00 0.00 3.07
2375 3158 5.980116 ACATCTAGACTACGAAATGCACATC 59.020 40.000 0.00 0.00 0.00 3.06
2376 3159 5.907207 ACATCTAGACTACGAAATGCACAT 58.093 37.500 0.00 0.00 0.00 3.21
2377 3160 5.324784 ACATCTAGACTACGAAATGCACA 57.675 39.130 0.00 0.00 0.00 4.57
2378 3161 5.686397 GGTACATCTAGACTACGAAATGCAC 59.314 44.000 0.00 0.00 0.00 4.57
2379 3162 5.593095 AGGTACATCTAGACTACGAAATGCA 59.407 40.000 0.00 0.00 0.00 3.96
2380 3163 6.074544 AGGTACATCTAGACTACGAAATGC 57.925 41.667 0.00 0.00 0.00 3.56
2385 3168 9.624373 AGAAAATTAGGTACATCTAGACTACGA 57.376 33.333 0.00 0.00 0.00 3.43
2386 3169 9.881529 GAGAAAATTAGGTACATCTAGACTACG 57.118 37.037 0.00 0.00 0.00 3.51
2416 3199 9.912634 CAAACATTACAAACTTTGACCATATCT 57.087 29.630 8.55 0.00 0.00 1.98
2417 3200 9.906660 TCAAACATTACAAACTTTGACCATATC 57.093 29.630 8.55 0.00 29.66 1.63
2418 3201 9.691362 GTCAAACATTACAAACTTTGACCATAT 57.309 29.630 8.55 0.00 43.35 1.78
2423 3206 9.739786 CAAAAGTCAAACATTACAAACTTTGAC 57.260 29.630 8.55 12.19 46.84 3.18
2424 3207 8.439286 GCAAAAGTCAAACATTACAAACTTTGA 58.561 29.630 8.55 0.00 37.12 2.69
2425 3208 8.226448 TGCAAAAGTCAAACATTACAAACTTTG 58.774 29.630 0.00 0.00 37.12 2.77
2426 3209 8.316640 TGCAAAAGTCAAACATTACAAACTTT 57.683 26.923 0.00 0.00 38.27 2.66
2427 3210 7.897575 TGCAAAAGTCAAACATTACAAACTT 57.102 28.000 0.00 0.00 0.00 2.66
2428 3211 7.897575 TTGCAAAAGTCAAACATTACAAACT 57.102 28.000 0.00 0.00 0.00 2.66
2429 3212 8.941127 TTTTGCAAAAGTCAAACATTACAAAC 57.059 26.923 20.46 0.00 33.66 2.93
2431 3214 9.766277 GATTTTTGCAAAAGTCAAACATTACAA 57.234 25.926 31.15 12.48 35.47 2.41
2432 3215 9.160496 AGATTTTTGCAAAAGTCAAACATTACA 57.840 25.926 34.74 15.56 37.17 2.41
2438 3221 9.797473 GCTTATAGATTTTTGCAAAAGTCAAAC 57.203 29.630 34.74 19.71 37.17 2.93
2439 3222 9.539825 TGCTTATAGATTTTTGCAAAAGTCAAA 57.460 25.926 34.74 26.42 37.17 2.69
2440 3223 8.977505 GTGCTTATAGATTTTTGCAAAAGTCAA 58.022 29.630 34.74 24.21 37.17 3.18
2441 3224 8.359642 AGTGCTTATAGATTTTTGCAAAAGTCA 58.640 29.630 34.74 25.12 37.17 3.41
2442 3225 8.748380 AGTGCTTATAGATTTTTGCAAAAGTC 57.252 30.769 29.81 29.81 35.58 3.01
2443 3226 9.626045 GTAGTGCTTATAGATTTTTGCAAAAGT 57.374 29.630 22.78 20.72 32.10 2.66
2444 3227 9.624697 TGTAGTGCTTATAGATTTTTGCAAAAG 57.375 29.630 22.78 11.15 32.10 2.27
2452 3235 9.573166 TGCCATAATGTAGTGCTTATAGATTTT 57.427 29.630 0.00 0.00 0.00 1.82
2453 3236 9.003658 GTGCCATAATGTAGTGCTTATAGATTT 57.996 33.333 0.00 0.00 0.00 2.17
2454 3237 7.331934 CGTGCCATAATGTAGTGCTTATAGATT 59.668 37.037 0.00 0.00 0.00 2.40
2455 3238 6.813649 CGTGCCATAATGTAGTGCTTATAGAT 59.186 38.462 0.00 0.00 0.00 1.98
2456 3239 6.156519 CGTGCCATAATGTAGTGCTTATAGA 58.843 40.000 0.00 0.00 0.00 1.98
2457 3240 5.348724 CCGTGCCATAATGTAGTGCTTATAG 59.651 44.000 0.00 0.00 0.00 1.31
2458 3241 5.011227 TCCGTGCCATAATGTAGTGCTTATA 59.989 40.000 0.00 0.00 0.00 0.98
2459 3242 4.065088 CCGTGCCATAATGTAGTGCTTAT 58.935 43.478 0.00 0.00 0.00 1.73
2460 3243 3.133183 TCCGTGCCATAATGTAGTGCTTA 59.867 43.478 0.00 0.00 0.00 3.09
2461 3244 2.093181 TCCGTGCCATAATGTAGTGCTT 60.093 45.455 0.00 0.00 0.00 3.91
2462 3245 1.484653 TCCGTGCCATAATGTAGTGCT 59.515 47.619 0.00 0.00 0.00 4.40
2463 3246 1.948104 TCCGTGCCATAATGTAGTGC 58.052 50.000 0.00 0.00 0.00 4.40
2464 3247 2.807967 CCATCCGTGCCATAATGTAGTG 59.192 50.000 0.00 0.00 0.00 2.74
2465 3248 2.703536 TCCATCCGTGCCATAATGTAGT 59.296 45.455 0.00 0.00 0.00 2.73
2466 3249 3.244215 ACTCCATCCGTGCCATAATGTAG 60.244 47.826 0.00 0.00 0.00 2.74
2467 3250 2.703536 ACTCCATCCGTGCCATAATGTA 59.296 45.455 0.00 0.00 0.00 2.29
2468 3251 1.490490 ACTCCATCCGTGCCATAATGT 59.510 47.619 0.00 0.00 0.00 2.71
2469 3252 2.260844 ACTCCATCCGTGCCATAATG 57.739 50.000 0.00 0.00 0.00 1.90
2470 3253 5.755409 TTATACTCCATCCGTGCCATAAT 57.245 39.130 0.00 0.00 0.00 1.28
2471 3254 5.755409 ATTATACTCCATCCGTGCCATAA 57.245 39.130 0.00 0.00 0.00 1.90
2472 3255 5.483937 AGAATTATACTCCATCCGTGCCATA 59.516 40.000 0.00 0.00 0.00 2.74
2473 3256 4.287067 AGAATTATACTCCATCCGTGCCAT 59.713 41.667 0.00 0.00 0.00 4.40
2474 3257 3.646162 AGAATTATACTCCATCCGTGCCA 59.354 43.478 0.00 0.00 0.00 4.92
2475 3258 4.273148 AGAATTATACTCCATCCGTGCC 57.727 45.455 0.00 0.00 0.00 5.01
2476 3259 4.865365 GCTAGAATTATACTCCATCCGTGC 59.135 45.833 0.00 0.00 0.00 5.34
2477 3260 5.186021 AGGCTAGAATTATACTCCATCCGTG 59.814 44.000 0.00 0.00 0.00 4.94
2478 3261 5.334421 AGGCTAGAATTATACTCCATCCGT 58.666 41.667 0.00 0.00 0.00 4.69
2479 3262 5.923733 AGGCTAGAATTATACTCCATCCG 57.076 43.478 0.00 0.00 0.00 4.18
2480 3263 7.616150 TGTCTAGGCTAGAATTATACTCCATCC 59.384 40.741 25.07 8.65 36.40 3.51
2481 3264 8.582657 TGTCTAGGCTAGAATTATACTCCATC 57.417 38.462 25.07 9.05 36.40 3.51
2482 3265 8.174085 ACTGTCTAGGCTAGAATTATACTCCAT 58.826 37.037 25.07 4.56 36.40 3.41
2483 3266 7.527796 ACTGTCTAGGCTAGAATTATACTCCA 58.472 38.462 25.07 14.13 36.40 3.86
2484 3267 8.411991 AACTGTCTAGGCTAGAATTATACTCC 57.588 38.462 25.07 10.41 36.40 3.85
2617 3831 2.534349 AGTGACGCGTATAAATTGCTCG 59.466 45.455 13.97 0.00 0.00 5.03
2649 4055 5.649782 TGTACTAACTTTAACGGAGGGAG 57.350 43.478 0.00 0.00 0.00 4.30
2650 4056 6.041979 ACTTTGTACTAACTTTAACGGAGGGA 59.958 38.462 0.00 0.00 0.00 4.20
2651 4057 6.226052 ACTTTGTACTAACTTTAACGGAGGG 58.774 40.000 0.00 0.00 0.00 4.30
2652 4058 7.439056 TCAACTTTGTACTAACTTTAACGGAGG 59.561 37.037 0.00 0.00 0.00 4.30
2653 4059 8.356533 TCAACTTTGTACTAACTTTAACGGAG 57.643 34.615 0.00 0.00 0.00 4.63
2654 4060 7.981225 ACTCAACTTTGTACTAACTTTAACGGA 59.019 33.333 0.00 0.00 0.00 4.69
2655 4061 8.134905 ACTCAACTTTGTACTAACTTTAACGG 57.865 34.615 0.00 0.00 0.00 4.44
2670 4076 9.370126 CGTCTCAAAATAAGTAACTCAACTTTG 57.630 33.333 0.00 0.00 40.20 2.77
2671 4077 8.557029 CCGTCTCAAAATAAGTAACTCAACTTT 58.443 33.333 0.00 0.00 40.20 2.66
2672 4078 7.929785 TCCGTCTCAAAATAAGTAACTCAACTT 59.070 33.333 0.00 0.00 42.31 2.66
2673 4079 7.439381 TCCGTCTCAAAATAAGTAACTCAACT 58.561 34.615 0.00 0.00 0.00 3.16
2674 4080 7.148623 CCTCCGTCTCAAAATAAGTAACTCAAC 60.149 40.741 0.00 0.00 0.00 3.18
2675 4081 6.872020 CCTCCGTCTCAAAATAAGTAACTCAA 59.128 38.462 0.00 0.00 0.00 3.02
2676 4082 6.395629 CCTCCGTCTCAAAATAAGTAACTCA 58.604 40.000 0.00 0.00 0.00 3.41
2677 4083 5.811100 CCCTCCGTCTCAAAATAAGTAACTC 59.189 44.000 0.00 0.00 0.00 3.01
2678 4084 5.482878 TCCCTCCGTCTCAAAATAAGTAACT 59.517 40.000 0.00 0.00 0.00 2.24
2679 4085 5.727434 TCCCTCCGTCTCAAAATAAGTAAC 58.273 41.667 0.00 0.00 0.00 2.50
2680 4086 5.482878 ACTCCCTCCGTCTCAAAATAAGTAA 59.517 40.000 0.00 0.00 0.00 2.24
2681 4087 5.021458 ACTCCCTCCGTCTCAAAATAAGTA 58.979 41.667 0.00 0.00 0.00 2.24
2682 4088 3.838903 ACTCCCTCCGTCTCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
2683 4089 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
2684 4090 5.424252 ACATACTCCCTCCGTCTCAAAATAA 59.576 40.000 0.00 0.00 0.00 1.40
2690 4096 2.240414 TGTACATACTCCCTCCGTCTCA 59.760 50.000 0.00 0.00 0.00 3.27
2691 4097 2.928334 TGTACATACTCCCTCCGTCTC 58.072 52.381 0.00 0.00 0.00 3.36
2692 4098 3.377253 TTGTACATACTCCCTCCGTCT 57.623 47.619 0.00 0.00 0.00 4.18
2773 4262 4.411256 ACAGTTAGTTTGGAAGGTTCGA 57.589 40.909 0.00 0.00 0.00 3.71
2796 4286 2.389962 AACAACCAATCATGCATGCC 57.610 45.000 22.25 0.00 0.00 4.40
2807 4307 6.777213 TGTTTTAAGGAAGCTAACAACCAA 57.223 33.333 0.00 0.00 0.00 3.67
3057 5123 0.337428 AGAATGGCAAGCCCCAGATT 59.663 50.000 8.89 1.24 38.50 2.40
3280 5398 1.063649 GCATGCATGGTCTTGAGCG 59.936 57.895 27.34 0.00 0.00 5.03
3322 5503 5.334414 GCACCACAAAAATTCAAAACACACA 60.334 36.000 0.00 0.00 0.00 3.72
3479 5660 0.528684 GTCCGCCATCTCGAAGAAGG 60.529 60.000 0.00 0.00 36.24 3.46
3757 6080 1.372582 ATTGCATGTCAGCGTCGATT 58.627 45.000 0.00 0.00 37.31 3.34
3770 6093 3.332919 TGCGTGCCAAAATAAATTGCAT 58.667 36.364 0.00 0.00 0.00 3.96
3785 6109 4.152625 GATCGTGCCACTGCGTGC 62.153 66.667 0.00 0.00 41.78 5.34
3786 6110 3.490759 GGATCGTGCCACTGCGTG 61.491 66.667 0.00 2.27 41.78 5.34
3787 6111 4.002506 TGGATCGTGCCACTGCGT 62.003 61.111 0.00 0.00 41.78 5.24
4069 6397 4.954933 GCGATCCAGTTGCCCTTA 57.045 55.556 0.00 0.00 0.00 2.69
4171 6499 4.559229 GGTACGTACTCGGCCGCC 62.559 72.222 23.51 9.67 41.85 6.13
4188 6516 5.382618 AGAACGTATTATACCGGCCTTAG 57.617 43.478 0.00 0.00 0.00 2.18
4320 6670 9.917887 AGGACTTACACACTGTAGTAGTAATAT 57.082 33.333 8.66 3.34 37.60 1.28
4322 6672 8.647256 AAGGACTTACACACTGTAGTAGTAAT 57.353 34.615 8.66 2.84 37.60 1.89
4323 6673 9.224267 CTAAGGACTTACACACTGTAGTAGTAA 57.776 37.037 8.18 8.18 37.60 2.24
4326 6676 6.095160 CCCTAAGGACTTACACACTGTAGTAG 59.905 46.154 0.00 0.00 32.01 2.57
4348 6698 6.767524 GACTATTAGTCATCATCGATCCCT 57.232 41.667 17.16 0.00 44.45 4.20
4374 6724 4.623932 TTATCATGCATGACCTAGTCCC 57.376 45.455 30.92 0.00 40.03 4.46
4428 6783 0.109597 GTCGCGAGTCCTTAACCGAA 60.110 55.000 10.24 0.00 0.00 4.30
4471 6826 1.811266 CGATCTTGTGGTCGCAGGG 60.811 63.158 0.00 0.00 0.00 4.45
4474 6829 0.530288 TGATCGATCTTGTGGTCGCA 59.470 50.000 25.02 0.00 37.74 5.10
4489 6844 2.168106 CCCCTGAGATCGATCCATGATC 59.832 54.545 21.66 12.57 42.04 2.92
4490 6845 2.186243 CCCCTGAGATCGATCCATGAT 58.814 52.381 21.66 2.52 0.00 2.45
4491 6846 1.147817 TCCCCTGAGATCGATCCATGA 59.852 52.381 21.66 12.25 0.00 3.07
4492 6847 1.637338 TCCCCTGAGATCGATCCATG 58.363 55.000 21.66 14.74 0.00 3.66
4543 6898 2.169832 AATCACACAAGGACCGACTG 57.830 50.000 0.00 0.00 0.00 3.51
4548 6903 8.693625 AGTAGTATAAGTAATCACACAAGGACC 58.306 37.037 0.00 0.00 0.00 4.46
4580 6935 6.163476 GGGCGTACATGATGAATCATAGTAA 58.837 40.000 0.00 0.00 45.23 2.24
4582 6937 4.563580 GGGGCGTACATGATGAATCATAGT 60.564 45.833 0.00 8.81 45.23 2.12
4583 6938 3.935203 GGGGCGTACATGATGAATCATAG 59.065 47.826 0.00 3.98 45.23 2.23
4584 6939 3.307410 GGGGGCGTACATGATGAATCATA 60.307 47.826 0.00 0.00 45.23 2.15
4630 6985 7.071069 TGCTCATAGATCCAATAGTGACATT 57.929 36.000 0.00 0.00 0.00 2.71
4635 6990 5.243207 TGCATGCTCATAGATCCAATAGTG 58.757 41.667 20.33 0.00 0.00 2.74
4680 7035 4.530710 ATGTCATTTGCAGCAGAACATT 57.469 36.364 0.00 0.00 0.00 2.71
4714 7069 0.822121 AACCCTCAAACAAGCCGGTC 60.822 55.000 1.90 0.00 0.00 4.79
4715 7070 0.396556 AAACCCTCAAACAAGCCGGT 60.397 50.000 1.90 0.00 0.00 5.28
4718 7073 1.704641 AGGAAACCCTCAAACAAGCC 58.295 50.000 0.00 0.00 0.00 4.35
4752 7107 3.365535 GGCACAAATGGCCGAACT 58.634 55.556 0.00 0.00 45.63 3.01
4759 7114 6.762661 CCCTTGAAATATAAAGGCACAAATGG 59.237 38.462 6.33 0.00 41.46 3.16
4780 7135 2.159179 AACAGACTTTTGCACCCCTT 57.841 45.000 0.00 0.00 0.00 3.95
4789 7144 7.771183 TGTCATTTAGCTCAAAACAGACTTTT 58.229 30.769 13.36 0.00 32.29 2.27
4794 7149 7.308770 CCAGAATGTCATTTAGCTCAAAACAGA 60.309 37.037 0.00 0.00 0.00 3.41
4797 7152 6.681777 ACCAGAATGTCATTTAGCTCAAAAC 58.318 36.000 0.00 0.00 0.00 2.43
4800 7155 5.183713 CCAACCAGAATGTCATTTAGCTCAA 59.816 40.000 0.00 0.00 0.00 3.02
4801 7156 4.701651 CCAACCAGAATGTCATTTAGCTCA 59.298 41.667 0.00 0.00 0.00 4.26
4839 7194 5.163723 TGTTAGGACTTAACGACGTATCCAG 60.164 44.000 17.63 8.13 43.78 3.86
4960 7315 4.797471 TGACAAATCTTTGCCTCATTTCG 58.203 39.130 2.63 0.00 41.79 3.46
5003 7358 6.515272 AACATAATTAACCTGGCAACTCTG 57.485 37.500 0.00 0.00 37.61 3.35
5040 7395 7.778382 GGATAAATACAAAGGGGTACATGACTT 59.222 37.037 0.00 0.00 0.00 3.01
5041 7396 7.287810 GGATAAATACAAAGGGGTACATGACT 58.712 38.462 0.00 0.00 0.00 3.41
5042 7397 6.489022 GGGATAAATACAAAGGGGTACATGAC 59.511 42.308 0.00 0.00 0.00 3.06
5044 7399 5.472137 CGGGATAAATACAAAGGGGTACATG 59.528 44.000 0.00 0.00 0.00 3.21
5045 7400 5.133153 ACGGGATAAATACAAAGGGGTACAT 59.867 40.000 0.00 0.00 0.00 2.29
5046 7401 4.474287 ACGGGATAAATACAAAGGGGTACA 59.526 41.667 0.00 0.00 0.00 2.90
5047 7402 5.039920 ACGGGATAAATACAAAGGGGTAC 57.960 43.478 0.00 0.00 0.00 3.34
5048 7403 5.044993 ACAACGGGATAAATACAAAGGGGTA 60.045 40.000 0.00 0.00 0.00 3.69
5050 7405 4.274978 ACAACGGGATAAATACAAAGGGG 58.725 43.478 0.00 0.00 0.00 4.79
5051 7406 8.680039 TTATACAACGGGATAAATACAAAGGG 57.320 34.615 0.00 0.00 0.00 3.95
5052 7407 8.780249 CCTTATACAACGGGATAAATACAAAGG 58.220 37.037 0.00 0.00 0.00 3.11
5054 7409 7.720515 CCCCTTATACAACGGGATAAATACAAA 59.279 37.037 0.00 0.00 40.55 2.83
5056 7411 6.329723 ACCCCTTATACAACGGGATAAATACA 59.670 38.462 0.00 0.00 40.55 2.29
5057 7412 6.772605 ACCCCTTATACAACGGGATAAATAC 58.227 40.000 0.00 0.00 40.55 1.89
5058 7413 7.391388 AACCCCTTATACAACGGGATAAATA 57.609 36.000 0.00 0.00 40.55 1.40
5059 7414 5.917545 ACCCCTTATACAACGGGATAAAT 57.082 39.130 0.00 0.00 40.55 1.40
5062 7417 4.102996 GGAAACCCCTTATACAACGGGATA 59.897 45.833 0.00 0.00 40.55 2.59
5064 7419 2.239402 GGAAACCCCTTATACAACGGGA 59.761 50.000 0.00 0.00 40.55 5.14
5066 7421 3.275999 CAGGAAACCCCTTATACAACGG 58.724 50.000 0.00 0.00 44.85 4.44
5067 7422 2.681344 GCAGGAAACCCCTTATACAACG 59.319 50.000 0.00 0.00 44.85 4.10
5068 7423 3.692690 TGCAGGAAACCCCTTATACAAC 58.307 45.455 0.00 0.00 44.85 3.32
5070 7425 5.133660 ACATATGCAGGAAACCCCTTATACA 59.866 40.000 1.58 0.00 44.85 2.29
5071 7426 5.631119 ACATATGCAGGAAACCCCTTATAC 58.369 41.667 1.58 0.00 44.85 1.47
5072 7427 5.922960 ACATATGCAGGAAACCCCTTATA 57.077 39.130 1.58 0.00 44.85 0.98
5074 7429 4.532834 GAACATATGCAGGAAACCCCTTA 58.467 43.478 1.58 0.00 44.85 2.69
5075 7430 3.365472 GAACATATGCAGGAAACCCCTT 58.635 45.455 1.58 0.00 44.85 3.95
5076 7431 6.943825 GTGGAACATATGCAGGAAACCCCT 62.944 50.000 1.58 0.00 45.17 4.79
5077 7432 2.031870 GGAACATATGCAGGAAACCCC 58.968 52.381 1.58 0.00 0.00 4.95
5078 7433 2.427095 GTGGAACATATGCAGGAAACCC 59.573 50.000 1.58 0.00 44.52 4.11
5079 7434 3.088532 TGTGGAACATATGCAGGAAACC 58.911 45.455 1.58 0.00 45.67 3.27
5096 7451 8.135529 CCGATATATATACATGTACAGGTGTGG 58.864 40.741 22.69 8.15 0.00 4.17
5098 7453 7.201884 GGCCGATATATATACATGTACAGGTGT 60.202 40.741 22.69 18.40 0.00 4.16
5099 7454 7.014326 AGGCCGATATATATACATGTACAGGTG 59.986 40.741 22.69 9.15 0.00 4.00
5101 7456 7.526142 AGGCCGATATATATACATGTACAGG 57.474 40.000 7.96 5.87 0.00 4.00
5104 7459 7.974501 GCCATAGGCCGATATATATACATGTAC 59.025 40.741 7.96 0.00 44.06 2.90
5105 7460 8.063200 GCCATAGGCCGATATATATACATGTA 57.937 38.462 8.27 8.27 44.06 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.