Multiple sequence alignment - TraesCS4D01G296900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G296900 chr4D 100.000 7255 0 0 1 7255 466015024 466022278 0.000000e+00 13398.0
1 TraesCS4D01G296900 chr4A 94.127 3848 131 30 3440 7249 4591683 4587893 0.000000e+00 5766.0
2 TraesCS4D01G296900 chr4A 92.612 2707 106 40 727 3394 4594415 4591764 0.000000e+00 3805.0
3 TraesCS4D01G296900 chr4A 94.096 271 8 4 211 480 4594796 4594533 8.760000e-109 405.0
4 TraesCS4D01G296900 chr4A 88.710 124 11 1 559 682 4594528 4594408 1.630000e-31 148.0
5 TraesCS4D01G296900 chr4A 96.471 85 2 1 1401 1484 45361093 45361177 9.810000e-29 139.0
6 TraesCS4D01G296900 chr4A 96.226 53 2 0 1248 1300 5969053 5969105 3.610000e-13 87.9
7 TraesCS4D01G296900 chr4A 100.000 35 0 0 1518 1552 5969158 5969192 1.690000e-06 65.8
8 TraesCS4D01G296900 chr4B 96.241 3059 99 9 3805 6859 583478094 583481140 0.000000e+00 4998.0
9 TraesCS4D01G296900 chr4B 94.261 3032 97 38 738 3728 583474881 583477876 0.000000e+00 4564.0
10 TraesCS4D01G296900 chr4B 84.791 526 36 19 1 516 583473810 583474301 8.460000e-134 488.0
11 TraesCS4D01G296900 chr4B 95.146 309 9 1 6888 7190 583481138 583481446 3.940000e-132 483.0
12 TraesCS4D01G296900 chr4B 93.814 97 6 0 559 655 583474730 583474826 5.870000e-31 147.0
13 TraesCS4D01G296900 chr5D 88.038 209 11 2 1346 1552 217742113 217742309 1.220000e-57 235.0
14 TraesCS4D01G296900 chr5D 97.015 67 2 0 1346 1412 524485045 524485111 5.950000e-21 113.0
15 TraesCS4D01G296900 chr3D 91.018 167 13 1 1349 1513 330252911 330252745 2.630000e-54 224.0
16 TraesCS4D01G296900 chr1B 90.179 112 11 0 1932 2043 316642451 316642340 5.870000e-31 147.0
17 TraesCS4D01G296900 chr1A 93.258 89 5 1 1401 1488 314478186 314478274 5.910000e-26 130.0
18 TraesCS4D01G296900 chr1A 100.000 33 0 0 1543 1575 540392240 540392208 2.190000e-05 62.1
19 TraesCS4D01G296900 chr5B 89.888 89 8 1 1401 1488 498069660 498069572 5.950000e-21 113.0
20 TraesCS4D01G296900 chr7D 83.206 131 2 3 1498 1627 12550395 12550284 1.290000e-17 102.0
21 TraesCS4D01G296900 chr7B 98.113 53 1 0 1248 1300 423179207 423179259 7.750000e-15 93.5
22 TraesCS4D01G296900 chr7B 96.429 56 2 0 1245 1300 427406156 427406101 7.750000e-15 93.5
23 TraesCS4D01G296900 chr7B 96.226 53 2 0 1248 1300 734276049 734276101 3.610000e-13 87.9
24 TraesCS4D01G296900 chr1D 96.429 56 2 0 1245 1300 488428251 488428196 7.750000e-15 93.5
25 TraesCS4D01G296900 chr3A 94.231 52 3 0 1248 1299 690464177 690464228 6.030000e-11 80.5
26 TraesCS4D01G296900 chr3A 100.000 30 0 0 1543 1572 555114851 555114880 1.000000e-03 56.5
27 TraesCS4D01G296900 chr2D 100.000 31 0 0 1545 1575 102288528 102288558 2.830000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G296900 chr4D 466015024 466022278 7254 False 13398 13398 100.00000 1 7255 1 chr4D.!!$F1 7254
1 TraesCS4D01G296900 chr4A 4587893 4594796 6903 True 2531 5766 92.38625 211 7249 4 chr4A.!!$R1 7038
2 TraesCS4D01G296900 chr4B 583473810 583481446 7636 False 2136 4998 92.85060 1 7190 5 chr4B.!!$F1 7189

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 186 0.176680 GCAGAGAGCGAGAAATGGGA 59.823 55.0 0.00 0.00 0.00 4.37 F
636 1099 0.179076 TGCATCGCTATGTCCACTGG 60.179 55.0 0.00 0.00 35.38 4.00 F
1641 2117 0.592247 GCGACAACCACAACAAGCTG 60.592 55.0 0.00 0.00 0.00 4.24 F
2439 2937 0.542467 TGGCAGGGTTTGTGCATCAT 60.542 50.0 0.00 0.00 43.12 2.45 F
3422 3998 0.248907 TCGATCGGCCGATGAAGTTC 60.249 55.0 43.46 27.46 34.60 3.01 F
3423 3999 0.527600 CGATCGGCCGATGAAGTTCA 60.528 55.0 43.46 13.24 34.60 3.18 F
4463 5188 0.113776 TCCAGGTGTACTTCGACCCT 59.886 55.0 0.00 0.00 32.03 4.34 F
4841 5566 0.530744 CCTGCACTCCACTAACGCTA 59.469 55.0 0.00 0.00 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2066 2542 0.953727 TGGCATGTCAGAACAACAGC 59.046 50.000 0.00 0.00 39.30 4.40 R
2369 2865 0.466124 GTAGAGCGCTGGGAGGATTT 59.534 55.000 18.48 0.00 0.00 2.17 R
3211 3729 0.329261 CCTTGAACTCCATCCTGCCA 59.671 55.000 0.00 0.00 0.00 4.92 R
4331 5056 0.669932 GCTGCAGCTCCCATATCTCG 60.670 60.000 31.33 0.00 38.21 4.04 R
4463 5188 0.037326 GCCTCATCTTGTCCGTGTCA 60.037 55.000 0.00 0.00 0.00 3.58 R
4811 5536 2.185867 GTGCAGGCCATGGCAATG 59.814 61.111 36.56 31.83 42.45 2.82 R
5942 6668 1.293924 CGATCGCAATCCTCTGCTTT 58.706 50.000 0.26 0.00 40.33 3.51 R
6826 7571 0.802494 CTGCCACCGTTAACATGGTC 59.198 55.000 21.24 15.62 40.77 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.895932 AAATACTCAGATTTGAATTGTAACGC 57.104 30.769 0.00 0.00 31.69 4.84
38 39 4.957971 ACTCAGATTTGAATTGTAACGCG 58.042 39.130 3.53 3.53 31.69 6.01
39 40 4.142902 ACTCAGATTTGAATTGTAACGCGG 60.143 41.667 12.47 0.00 31.69 6.46
40 41 2.845967 CAGATTTGAATTGTAACGCGGC 59.154 45.455 12.47 0.03 0.00 6.53
41 42 2.159435 AGATTTGAATTGTAACGCGGCC 60.159 45.455 12.47 0.00 0.00 6.13
42 43 0.952280 TTTGAATTGTAACGCGGCCA 59.048 45.000 12.47 0.00 0.00 5.36
47 48 0.963355 ATTGTAACGCGGCCAACCAT 60.963 50.000 12.47 0.00 34.57 3.55
76 78 6.318900 TCGTCTGAAGAATAGACAGCAGATAA 59.681 38.462 0.00 0.00 43.65 1.75
85 87 9.087871 AGAATAGACAGCAGATAATCATACTGT 57.912 33.333 0.00 0.00 40.85 3.55
86 88 9.703892 GAATAGACAGCAGATAATCATACTGTT 57.296 33.333 0.00 0.00 38.42 3.16
89 91 8.798859 AGACAGCAGATAATCATACTGTTTTT 57.201 30.769 0.00 0.00 38.42 1.94
121 123 6.471976 TTGCGAATCAGATAATCATACTGC 57.528 37.500 0.00 0.00 0.00 4.40
138 140 6.317140 TCATACTGCTGCTTTCCAAATCTTAG 59.683 38.462 0.00 0.00 0.00 2.18
141 143 5.645497 ACTGCTGCTTTCCAAATCTTAGTAG 59.355 40.000 0.00 0.00 0.00 2.57
143 145 6.707290 TGCTGCTTTCCAAATCTTAGTAGTA 58.293 36.000 0.00 0.00 0.00 1.82
144 146 7.338710 TGCTGCTTTCCAAATCTTAGTAGTAT 58.661 34.615 0.00 0.00 0.00 2.12
180 186 0.176680 GCAGAGAGCGAGAAATGGGA 59.823 55.000 0.00 0.00 0.00 4.37
181 187 1.933247 CAGAGAGCGAGAAATGGGAC 58.067 55.000 0.00 0.00 0.00 4.46
195 201 2.265904 GGGACAAGGGCCGTGAAAC 61.266 63.158 26.44 15.20 0.00 2.78
248 254 1.140852 CTGGGCATATTCTGGGACGAA 59.859 52.381 0.00 0.00 0.00 3.85
249 255 1.134220 TGGGCATATTCTGGGACGAAC 60.134 52.381 0.00 0.00 0.00 3.95
373 381 0.682209 CTTGGTGGCAGGCTGCTAAT 60.682 55.000 35.73 0.00 44.28 1.73
374 382 0.966875 TTGGTGGCAGGCTGCTAATG 60.967 55.000 35.73 1.63 44.28 1.90
375 383 1.077501 GGTGGCAGGCTGCTAATGA 60.078 57.895 35.73 14.30 44.28 2.57
488 496 8.633075 TGATCACATCAAAGAAAAGAAACAAC 57.367 30.769 0.00 0.00 36.11 3.32
489 497 7.706179 TGATCACATCAAAGAAAAGAAACAACC 59.294 33.333 0.00 0.00 36.11 3.77
490 498 6.929625 TCACATCAAAGAAAAGAAACAACCA 58.070 32.000 0.00 0.00 0.00 3.67
491 499 7.555087 TCACATCAAAGAAAAGAAACAACCAT 58.445 30.769 0.00 0.00 0.00 3.55
492 500 7.706179 TCACATCAAAGAAAAGAAACAACCATC 59.294 33.333 0.00 0.00 0.00 3.51
493 501 7.707893 CACATCAAAGAAAAGAAACAACCATCT 59.292 33.333 0.00 0.00 0.00 2.90
494 502 8.912988 ACATCAAAGAAAAGAAACAACCATCTA 58.087 29.630 0.00 0.00 0.00 1.98
495 503 9.403110 CATCAAAGAAAAGAAACAACCATCTAG 57.597 33.333 0.00 0.00 0.00 2.43
496 504 8.519799 TCAAAGAAAAGAAACAACCATCTAGT 57.480 30.769 0.00 0.00 0.00 2.57
497 505 8.966868 TCAAAGAAAAGAAACAACCATCTAGTT 58.033 29.630 0.00 0.00 0.00 2.24
498 506 9.237846 CAAAGAAAAGAAACAACCATCTAGTTC 57.762 33.333 0.00 0.00 0.00 3.01
499 507 8.519799 AAGAAAAGAAACAACCATCTAGTTCA 57.480 30.769 0.00 0.00 0.00 3.18
500 508 8.159344 AGAAAAGAAACAACCATCTAGTTCAG 57.841 34.615 0.00 0.00 0.00 3.02
501 509 6.884280 AAAGAAACAACCATCTAGTTCAGG 57.116 37.500 0.00 0.00 0.00 3.86
502 510 4.327680 AGAAACAACCATCTAGTTCAGGC 58.672 43.478 0.00 0.00 0.00 4.85
503 511 4.042187 AGAAACAACCATCTAGTTCAGGCT 59.958 41.667 0.00 0.00 0.00 4.58
504 512 3.618690 ACAACCATCTAGTTCAGGCTC 57.381 47.619 0.00 0.00 0.00 4.70
505 513 2.237392 ACAACCATCTAGTTCAGGCTCC 59.763 50.000 0.00 0.00 0.00 4.70
506 514 2.237143 CAACCATCTAGTTCAGGCTCCA 59.763 50.000 0.00 0.00 0.00 3.86
507 515 1.834263 ACCATCTAGTTCAGGCTCCAC 59.166 52.381 0.00 0.00 0.00 4.02
508 516 1.833630 CCATCTAGTTCAGGCTCCACA 59.166 52.381 0.00 0.00 0.00 4.17
509 517 2.437281 CCATCTAGTTCAGGCTCCACAT 59.563 50.000 0.00 0.00 0.00 3.21
510 518 3.464907 CATCTAGTTCAGGCTCCACATG 58.535 50.000 0.00 0.00 0.00 3.21
511 519 2.540383 TCTAGTTCAGGCTCCACATGT 58.460 47.619 0.00 0.00 0.00 3.21
512 520 2.906389 TCTAGTTCAGGCTCCACATGTT 59.094 45.455 0.00 0.00 0.00 2.71
513 521 2.664402 AGTTCAGGCTCCACATGTTT 57.336 45.000 0.00 0.00 0.00 2.83
514 522 3.788227 AGTTCAGGCTCCACATGTTTA 57.212 42.857 0.00 0.00 0.00 2.01
515 523 3.679389 AGTTCAGGCTCCACATGTTTAG 58.321 45.455 0.00 0.00 0.00 1.85
516 524 3.073062 AGTTCAGGCTCCACATGTTTAGT 59.927 43.478 0.00 0.00 0.00 2.24
517 525 3.057969 TCAGGCTCCACATGTTTAGTG 57.942 47.619 0.00 0.00 36.76 2.74
518 526 1.470098 CAGGCTCCACATGTTTAGTGC 59.530 52.381 0.00 0.61 35.69 4.40
519 527 1.352352 AGGCTCCACATGTTTAGTGCT 59.648 47.619 0.00 0.00 35.69 4.40
520 528 1.470098 GGCTCCACATGTTTAGTGCTG 59.530 52.381 0.00 0.00 35.69 4.41
521 529 2.426522 GCTCCACATGTTTAGTGCTGA 58.573 47.619 0.00 0.00 35.69 4.26
522 530 2.813754 GCTCCACATGTTTAGTGCTGAA 59.186 45.455 0.00 0.00 35.69 3.02
523 531 3.441572 GCTCCACATGTTTAGTGCTGAAT 59.558 43.478 0.00 0.00 35.69 2.57
524 532 4.437930 GCTCCACATGTTTAGTGCTGAATC 60.438 45.833 0.00 0.00 35.69 2.52
525 533 4.009675 TCCACATGTTTAGTGCTGAATCC 58.990 43.478 0.00 0.00 35.69 3.01
526 534 3.758023 CCACATGTTTAGTGCTGAATCCA 59.242 43.478 0.00 0.00 35.69 3.41
527 535 4.379813 CCACATGTTTAGTGCTGAATCCAC 60.380 45.833 0.00 0.00 35.69 4.02
528 536 4.216042 CACATGTTTAGTGCTGAATCCACA 59.784 41.667 0.00 0.00 35.69 4.17
529 537 4.456911 ACATGTTTAGTGCTGAATCCACAG 59.543 41.667 0.00 0.00 40.43 3.66
536 544 2.845019 CTGAATCCACAGCGCAAGA 58.155 52.632 11.47 0.00 43.02 3.02
537 545 1.159285 CTGAATCCACAGCGCAAGAA 58.841 50.000 11.47 0.00 43.02 2.52
538 546 1.741706 CTGAATCCACAGCGCAAGAAT 59.258 47.619 11.47 0.00 43.02 2.40
539 547 2.938451 CTGAATCCACAGCGCAAGAATA 59.062 45.455 11.47 0.00 43.02 1.75
540 548 2.677836 TGAATCCACAGCGCAAGAATAC 59.322 45.455 11.47 0.00 43.02 1.89
541 549 2.401583 ATCCACAGCGCAAGAATACA 57.598 45.000 11.47 0.00 43.02 2.29
542 550 2.177394 TCCACAGCGCAAGAATACAA 57.823 45.000 11.47 0.00 43.02 2.41
543 551 2.076100 TCCACAGCGCAAGAATACAAG 58.924 47.619 11.47 0.00 43.02 3.16
544 552 1.131126 CCACAGCGCAAGAATACAAGG 59.869 52.381 11.47 0.00 43.02 3.61
545 553 1.806542 CACAGCGCAAGAATACAAGGT 59.193 47.619 11.47 0.00 43.02 3.50
546 554 3.000041 CACAGCGCAAGAATACAAGGTA 59.000 45.455 11.47 0.00 43.02 3.08
547 555 3.000727 ACAGCGCAAGAATACAAGGTAC 58.999 45.455 11.47 0.00 43.02 3.34
548 556 2.029244 CAGCGCAAGAATACAAGGTACG 59.971 50.000 11.47 0.00 43.02 3.67
549 557 1.267383 GCGCAAGAATACAAGGTACGC 60.267 52.381 0.30 0.00 43.02 4.42
550 558 1.006391 CGCAAGAATACAAGGTACGCG 60.006 52.381 3.53 3.53 43.02 6.01
551 559 2.264813 GCAAGAATACAAGGTACGCGA 58.735 47.619 15.93 0.00 0.00 5.87
552 560 2.281762 GCAAGAATACAAGGTACGCGAG 59.718 50.000 15.93 0.00 0.00 5.03
553 561 2.858344 CAAGAATACAAGGTACGCGAGG 59.142 50.000 15.93 0.00 0.00 4.63
554 562 2.372264 AGAATACAAGGTACGCGAGGA 58.628 47.619 15.93 0.00 0.00 3.71
555 563 2.358267 AGAATACAAGGTACGCGAGGAG 59.642 50.000 15.93 0.00 0.00 3.69
556 564 1.760192 ATACAAGGTACGCGAGGAGT 58.240 50.000 15.93 6.00 0.00 3.85
557 565 1.538047 TACAAGGTACGCGAGGAGTT 58.462 50.000 15.93 0.00 0.00 3.01
561 569 1.183549 AGGTACGCGAGGAGTTCATT 58.816 50.000 15.93 0.00 0.00 2.57
634 1097 0.528466 CGTGCATCGCTATGTCCACT 60.528 55.000 0.00 0.00 35.38 4.00
636 1099 0.179076 TGCATCGCTATGTCCACTGG 60.179 55.000 0.00 0.00 35.38 4.00
670 1133 6.970484 ACTTGGTAAAGCATCAAGTGTTTAG 58.030 36.000 2.23 0.00 46.17 1.85
671 1134 6.546034 ACTTGGTAAAGCATCAAGTGTTTAGT 59.454 34.615 2.23 0.00 46.17 2.24
674 1137 8.263940 TGGTAAAGCATCAAGTGTTTAGTATC 57.736 34.615 0.00 0.00 30.44 2.24
675 1138 7.880713 TGGTAAAGCATCAAGTGTTTAGTATCA 59.119 33.333 0.00 0.00 30.44 2.15
680 1143 8.092521 AGCATCAAGTGTTTAGTATCATATGC 57.907 34.615 0.00 0.00 36.08 3.14
681 1144 7.716560 AGCATCAAGTGTTTAGTATCATATGCA 59.283 33.333 0.00 0.00 37.79 3.96
682 1145 7.800380 GCATCAAGTGTTTAGTATCATATGCAC 59.200 37.037 0.00 0.00 35.94 4.57
683 1146 8.829612 CATCAAGTGTTTAGTATCATATGCACA 58.170 33.333 0.00 0.00 0.00 4.57
684 1147 8.424274 TCAAGTGTTTAGTATCATATGCACAG 57.576 34.615 0.00 0.00 0.00 3.66
685 1148 8.040727 TCAAGTGTTTAGTATCATATGCACAGT 58.959 33.333 0.00 0.00 0.00 3.55
686 1149 7.776933 AGTGTTTAGTATCATATGCACAGTG 57.223 36.000 0.00 0.00 0.00 3.66
687 1150 7.555965 AGTGTTTAGTATCATATGCACAGTGA 58.444 34.615 4.15 0.00 0.00 3.41
688 1151 8.206867 AGTGTTTAGTATCATATGCACAGTGAT 58.793 33.333 4.15 13.00 36.60 3.06
689 1152 8.830580 GTGTTTAGTATCATATGCACAGTGATT 58.169 33.333 4.15 0.00 34.62 2.57
690 1153 9.394767 TGTTTAGTATCATATGCACAGTGATTT 57.605 29.630 4.15 7.33 34.62 2.17
697 1160 7.451501 TCATATGCACAGTGATTTCAGAAAA 57.548 32.000 4.15 0.00 0.00 2.29
698 1161 7.884257 TCATATGCACAGTGATTTCAGAAAAA 58.116 30.769 4.15 0.00 0.00 1.94
723 1186 6.851222 AAGGCATGATATTTACAGAGTTCG 57.149 37.500 0.00 0.00 0.00 3.95
724 1187 4.752101 AGGCATGATATTTACAGAGTTCGC 59.248 41.667 0.00 0.00 0.00 4.70
725 1188 4.083802 GGCATGATATTTACAGAGTTCGCC 60.084 45.833 0.00 0.00 0.00 5.54
726 1189 4.083802 GCATGATATTTACAGAGTTCGCCC 60.084 45.833 0.00 0.00 0.00 6.13
727 1190 4.746535 TGATATTTACAGAGTTCGCCCA 57.253 40.909 0.00 0.00 0.00 5.36
728 1191 5.290493 TGATATTTACAGAGTTCGCCCAT 57.710 39.130 0.00 0.00 0.00 4.00
729 1192 6.413783 TGATATTTACAGAGTTCGCCCATA 57.586 37.500 0.00 0.00 0.00 2.74
730 1193 6.455647 TGATATTTACAGAGTTCGCCCATAG 58.544 40.000 0.00 0.00 0.00 2.23
750 1213 1.400846 GTGCAGGCAGAATCATGTCAG 59.599 52.381 0.00 0.00 0.00 3.51
776 1240 1.075979 CGCCATTCATCACGTCACGA 61.076 55.000 2.91 0.00 0.00 4.35
796 1260 3.001838 CGAACACGAAACAGTCAAATCCA 59.998 43.478 0.00 0.00 0.00 3.41
797 1261 4.527564 GAACACGAAACAGTCAAATCCAG 58.472 43.478 0.00 0.00 0.00 3.86
798 1262 3.541632 ACACGAAACAGTCAAATCCAGT 58.458 40.909 0.00 0.00 0.00 4.00
799 1263 3.312421 ACACGAAACAGTCAAATCCAGTG 59.688 43.478 0.00 0.00 0.00 3.66
800 1264 2.290641 ACGAAACAGTCAAATCCAGTGC 59.709 45.455 0.00 0.00 0.00 4.40
801 1265 2.290367 CGAAACAGTCAAATCCAGTGCA 59.710 45.455 0.00 0.00 0.00 4.57
804 1268 4.942761 AACAGTCAAATCCAGTGCAAAT 57.057 36.364 0.00 0.00 0.00 2.32
805 1269 6.403866 AAACAGTCAAATCCAGTGCAAATA 57.596 33.333 0.00 0.00 0.00 1.40
806 1270 6.594788 AACAGTCAAATCCAGTGCAAATAT 57.405 33.333 0.00 0.00 0.00 1.28
807 1271 7.701539 AACAGTCAAATCCAGTGCAAATATA 57.298 32.000 0.00 0.00 0.00 0.86
808 1272 7.701539 ACAGTCAAATCCAGTGCAAATATAA 57.298 32.000 0.00 0.00 0.00 0.98
809 1273 7.538575 ACAGTCAAATCCAGTGCAAATATAAC 58.461 34.615 0.00 0.00 0.00 1.89
810 1274 7.394359 ACAGTCAAATCCAGTGCAAATATAACT 59.606 33.333 0.00 0.00 0.00 2.24
811 1275 7.912250 CAGTCAAATCCAGTGCAAATATAACTC 59.088 37.037 0.00 0.00 0.00 3.01
825 1289 8.169268 GCAAATATAACTCATATACCGTTGCTC 58.831 37.037 0.00 0.00 38.09 4.26
921 1388 4.717629 CGACTGGCGACCAAGCGA 62.718 66.667 0.00 0.00 44.57 4.93
947 1414 4.029472 GGGAGCTACACCCGAGAA 57.971 61.111 0.00 0.00 37.85 2.87
949 1416 1.516423 GGAGCTACACCCGAGAACC 59.484 63.158 0.00 0.00 0.00 3.62
960 1427 1.446272 CGAGAACCGGAGCACCTTC 60.446 63.158 9.46 0.00 33.91 3.46
1568 2044 2.585247 GATGGTGAGGTACGGCGC 60.585 66.667 6.90 0.00 0.00 6.53
1569 2045 4.157120 ATGGTGAGGTACGGCGCC 62.157 66.667 19.07 19.07 38.34 6.53
1641 2117 0.592247 GCGACAACCACAACAAGCTG 60.592 55.000 0.00 0.00 0.00 4.24
1858 2334 1.679641 TACTCCACGCCGATGGACA 60.680 57.895 4.62 0.00 44.14 4.02
1983 2459 3.193263 CGACAAGGACCAGATGATGAAG 58.807 50.000 0.00 0.00 0.00 3.02
2035 2511 4.986587 TCGCCGTGGTTGTCGTCG 62.987 66.667 0.00 0.00 0.00 5.12
2083 2573 0.953727 TGGCTGTTGTTCTGACATGC 59.046 50.000 0.00 0.00 35.29 4.06
2098 2588 3.151554 GACATGCCATTCCTCATGCATA 58.848 45.455 0.00 0.00 42.72 3.14
2341 2834 6.205853 ACCAAGATTACATTGCTTAAACACGA 59.794 34.615 0.00 0.00 0.00 4.35
2360 2856 2.477189 CGATGCCCGTATCCACAAAAAC 60.477 50.000 0.00 0.00 0.00 2.43
2369 2865 4.155099 CGTATCCACAAAAACACATGGCTA 59.845 41.667 0.00 0.00 31.87 3.93
2387 2883 1.964223 CTAAATCCTCCCAGCGCTCTA 59.036 52.381 7.13 0.00 0.00 2.43
2414 2910 3.067106 ACTGCTGTACTTGTGCATGTAC 58.933 45.455 16.56 16.56 40.37 2.90
2439 2937 0.542467 TGGCAGGGTTTGTGCATCAT 60.542 50.000 0.00 0.00 43.12 2.45
2535 3033 2.591753 CCGGTCATGATGGCCTGT 59.408 61.111 14.92 0.00 40.79 4.00
2588 3086 1.359459 GCCGCCAACGAAGAGGTAAG 61.359 60.000 0.00 0.00 43.93 2.34
2590 3088 1.607251 CCGCCAACGAAGAGGTAAGTT 60.607 52.381 0.00 0.00 43.93 2.66
2591 3089 2.140717 CGCCAACGAAGAGGTAAGTTT 58.859 47.619 0.00 0.00 43.93 2.66
2592 3090 2.157085 CGCCAACGAAGAGGTAAGTTTC 59.843 50.000 0.00 0.00 43.93 2.78
2593 3091 3.400255 GCCAACGAAGAGGTAAGTTTCT 58.600 45.455 0.00 0.00 0.00 2.52
2595 3093 4.319549 GCCAACGAAGAGGTAAGTTTCTTG 60.320 45.833 0.00 0.00 33.97 3.02
2596 3094 4.319549 CCAACGAAGAGGTAAGTTTCTTGC 60.320 45.833 0.00 0.00 33.97 4.01
2598 3096 4.308265 ACGAAGAGGTAAGTTTCTTGCTC 58.692 43.478 0.00 0.00 33.97 4.26
2601 3099 4.965200 AGAGGTAAGTTTCTTGCTCACT 57.035 40.909 0.00 0.00 0.00 3.41
2602 3100 4.636249 AGAGGTAAGTTTCTTGCTCACTG 58.364 43.478 0.00 0.00 0.00 3.66
2603 3101 4.345257 AGAGGTAAGTTTCTTGCTCACTGA 59.655 41.667 0.00 0.00 0.00 3.41
2604 3102 5.012561 AGAGGTAAGTTTCTTGCTCACTGAT 59.987 40.000 0.00 0.00 0.00 2.90
2605 3103 4.999950 AGGTAAGTTTCTTGCTCACTGATG 59.000 41.667 0.00 0.00 0.00 3.07
2606 3104 4.154918 GGTAAGTTTCTTGCTCACTGATGG 59.845 45.833 0.00 0.00 0.00 3.51
2614 3118 0.747283 GCTCACTGATGGCTGAAGGG 60.747 60.000 0.00 0.00 0.00 3.95
2619 3123 1.707427 ACTGATGGCTGAAGGGAAACT 59.293 47.619 0.00 0.00 0.00 2.66
2620 3124 2.089980 CTGATGGCTGAAGGGAAACTG 58.910 52.381 0.00 0.00 0.00 3.16
2663 3167 4.408993 TTTGTGTTGCTTCTGATCATCG 57.591 40.909 0.00 0.00 0.00 3.84
2668 3172 4.330894 GTGTTGCTTCTGATCATCGATCAA 59.669 41.667 7.97 0.00 46.51 2.57
2690 3194 1.140375 CTAGGCGTCGTACCAACCC 59.860 63.158 0.00 0.00 0.00 4.11
3063 3581 2.222953 GAAATGGTGGTCGTCGTGCG 62.223 60.000 0.00 0.00 43.01 5.34
3064 3582 2.981977 AAATGGTGGTCGTCGTGCGT 62.982 55.000 0.00 0.00 42.13 5.24
3065 3583 4.934942 TGGTGGTCGTCGTGCGTG 62.935 66.667 0.00 0.00 42.13 5.34
3066 3584 4.936823 GGTGGTCGTCGTGCGTGT 62.937 66.667 0.00 0.00 42.13 4.49
3292 3810 4.422057 TCCTGTACAACCTGAACCTGATA 58.578 43.478 0.00 0.00 0.00 2.15
3394 3970 4.139234 GACCCCACGCGAGGTACC 62.139 72.222 21.30 2.73 36.17 3.34
3414 3990 1.250840 ATGGATGATCGATCGGCCGA 61.251 55.000 33.12 33.12 43.16 5.54
3421 3997 0.389391 ATCGATCGGCCGATGAAGTT 59.611 50.000 43.46 24.49 46.22 2.66
3422 3998 0.248907 TCGATCGGCCGATGAAGTTC 60.249 55.000 43.46 27.46 34.60 3.01
3423 3999 0.527600 CGATCGGCCGATGAAGTTCA 60.528 55.000 43.46 13.24 34.60 3.18
3424 4000 1.651987 GATCGGCCGATGAAGTTCAA 58.348 50.000 43.46 12.37 34.60 2.69
3425 4001 2.006888 GATCGGCCGATGAAGTTCAAA 58.993 47.619 43.46 11.76 34.60 2.69
3428 4004 1.135972 CGGCCGATGAAGTTCAAACTG 60.136 52.381 24.07 5.26 39.66 3.16
3429 4005 1.880027 GGCCGATGAAGTTCAAACTGT 59.120 47.619 10.14 0.00 39.66 3.55
3430 4006 3.071479 GGCCGATGAAGTTCAAACTGTA 58.929 45.455 10.14 0.00 39.66 2.74
3431 4007 3.689649 GGCCGATGAAGTTCAAACTGTAT 59.310 43.478 10.14 0.00 39.66 2.29
3432 4008 4.201822 GGCCGATGAAGTTCAAACTGTATC 60.202 45.833 10.14 0.00 39.66 2.24
3433 4009 4.631813 GCCGATGAAGTTCAAACTGTATCT 59.368 41.667 10.14 0.00 39.66 1.98
3434 4010 5.122396 GCCGATGAAGTTCAAACTGTATCTT 59.878 40.000 10.14 0.00 39.66 2.40
3435 4011 6.537566 CCGATGAAGTTCAAACTGTATCTTG 58.462 40.000 10.14 0.00 39.66 3.02
3436 4012 6.147821 CCGATGAAGTTCAAACTGTATCTTGT 59.852 38.462 10.14 0.00 39.66 3.16
3437 4013 7.307989 CCGATGAAGTTCAAACTGTATCTTGTT 60.308 37.037 10.14 0.00 39.66 2.83
3438 4014 7.531871 CGATGAAGTTCAAACTGTATCTTGTTG 59.468 37.037 10.14 0.00 39.66 3.33
3439 4015 7.026631 TGAAGTTCAAACTGTATCTTGTTGG 57.973 36.000 2.20 0.00 39.66 3.77
3440 4016 6.826231 TGAAGTTCAAACTGTATCTTGTTGGA 59.174 34.615 2.20 0.00 39.66 3.53
3441 4017 7.338196 TGAAGTTCAAACTGTATCTTGTTGGAA 59.662 33.333 2.20 0.00 39.66 3.53
3442 4018 7.264373 AGTTCAAACTGTATCTTGTTGGAAG 57.736 36.000 0.00 0.00 36.95 3.46
3443 4019 6.828785 AGTTCAAACTGTATCTTGTTGGAAGT 59.171 34.615 0.00 0.00 36.95 3.01
3453 4029 5.534207 TCTTGTTGGAAGTTCATGCAAAT 57.466 34.783 5.01 0.00 32.21 2.32
3505 4081 3.775654 CTGGACGGGCAGGACCTC 61.776 72.222 0.00 0.00 39.10 3.85
3740 4347 1.590932 AACTGATGATGCCGATGCTC 58.409 50.000 0.00 0.00 38.71 4.26
3742 4349 1.149148 CTGATGATGCCGATGCTCAG 58.851 55.000 0.00 0.00 38.71 3.35
3764 4371 1.550327 TGGCCTCACTAGTCTGTCTG 58.450 55.000 3.32 0.00 0.00 3.51
3766 4373 1.896465 GGCCTCACTAGTCTGTCTGTT 59.104 52.381 0.00 0.00 0.00 3.16
3767 4374 3.090037 GGCCTCACTAGTCTGTCTGTTA 58.910 50.000 0.00 0.00 0.00 2.41
3768 4375 3.510360 GGCCTCACTAGTCTGTCTGTTAA 59.490 47.826 0.00 0.00 0.00 2.01
3770 4377 4.924462 GCCTCACTAGTCTGTCTGTTAAAC 59.076 45.833 0.00 0.00 0.00 2.01
3771 4378 5.509163 GCCTCACTAGTCTGTCTGTTAAACA 60.509 44.000 0.00 0.00 0.00 2.83
3772 4379 6.513180 CCTCACTAGTCTGTCTGTTAAACAA 58.487 40.000 0.00 0.00 0.00 2.83
3773 4380 6.984474 CCTCACTAGTCTGTCTGTTAAACAAA 59.016 38.462 0.00 0.00 0.00 2.83
3774 4381 7.042658 CCTCACTAGTCTGTCTGTTAAACAAAC 60.043 40.741 0.00 0.00 38.67 2.93
3775 4382 7.324935 TCACTAGTCTGTCTGTTAAACAAACA 58.675 34.615 0.00 0.00 45.90 2.83
3777 4384 8.612619 CACTAGTCTGTCTGTTAAACAAACATT 58.387 33.333 0.00 0.00 46.81 2.71
3778 4385 9.174166 ACTAGTCTGTCTGTTAAACAAACATTT 57.826 29.630 0.00 0.00 46.81 2.32
3782 4389 9.301153 GTCTGTCTGTTAAACAAACATTTTCAT 57.699 29.630 0.00 0.00 46.81 2.57
3783 4390 9.868277 TCTGTCTGTTAAACAAACATTTTCATT 57.132 25.926 0.00 0.00 46.81 2.57
3811 4533 9.292195 TCTTTTCTTGGTTTATTACTAGGTTGG 57.708 33.333 0.00 0.00 0.00 3.77
3812 4534 7.457024 TTTCTTGGTTTATTACTAGGTTGGC 57.543 36.000 0.00 0.00 0.00 4.52
4241 4963 1.066752 CGTGTCGGTGTCCAAGTCA 59.933 57.895 0.00 0.00 0.00 3.41
4331 5056 3.567473 GCCAAGTTCAGCGTCTCC 58.433 61.111 0.00 0.00 0.00 3.71
4463 5188 0.113776 TCCAGGTGTACTTCGACCCT 59.886 55.000 0.00 0.00 32.03 4.34
4565 5290 4.357279 GGGCAGCAGGGCTTCTGT 62.357 66.667 0.00 0.00 45.08 3.41
4835 5560 1.603842 CATGGCCTGCACTCCACTA 59.396 57.895 3.32 0.00 34.81 2.74
4841 5566 0.530744 CCTGCACTCCACTAACGCTA 59.469 55.000 0.00 0.00 0.00 4.26
5057 5782 2.501261 CAGTACATGGGCATCATCCTG 58.499 52.381 0.00 0.00 32.92 3.86
5180 5905 1.871418 TCTTCCTCATCCTGGTCCTG 58.129 55.000 0.00 0.00 0.00 3.86
5195 5920 0.967887 TCCTGAGCTCCTTCTCCGTG 60.968 60.000 12.15 0.00 32.22 4.94
5498 6223 1.519455 GGTGCAGCGCTTCTACGAT 60.519 57.895 7.50 0.00 34.06 3.73
5567 6292 2.045536 CTCAAGTGGCTCAGGGGC 60.046 66.667 0.00 0.00 41.27 5.80
5789 6514 5.841957 AACTGCTCACAAATCTCAACTTT 57.158 34.783 0.00 0.00 0.00 2.66
5912 6638 2.029470 CGCTTATTTTTGGCAGGTTGGA 60.029 45.455 0.00 0.00 0.00 3.53
5942 6668 1.227943 GCAGCTGTCAGGTGGTCAA 60.228 57.895 28.40 0.00 43.49 3.18
5990 6716 1.205893 GTCCTGAAGCAGTCGAGGATT 59.794 52.381 0.00 0.00 36.53 3.01
6002 6728 1.047002 CGAGGATTCTGCTCCTGGAT 58.953 55.000 0.00 0.00 45.89 3.41
6257 6983 2.178521 CAGGCGTTCGCGTAGAGT 59.821 61.111 5.77 0.00 43.62 3.24
6259 6985 0.860618 CAGGCGTTCGCGTAGAGTAC 60.861 60.000 5.77 0.00 43.62 2.73
6260 6986 1.135315 GGCGTTCGCGTAGAGTACA 59.865 57.895 5.77 0.00 43.62 2.90
6261 6987 0.860618 GGCGTTCGCGTAGAGTACAG 60.861 60.000 5.77 0.00 43.62 2.74
6262 6988 0.095935 GCGTTCGCGTAGAGTACAGA 59.904 55.000 5.77 0.00 43.62 3.41
6264 6990 2.164427 CGTTCGCGTAGAGTACAGAAC 58.836 52.381 5.77 0.00 39.97 3.01
6420 7154 5.541845 TGCGAGAATACAAGGATTAGATGG 58.458 41.667 0.00 0.00 0.00 3.51
6508 7242 9.464714 GAGAGAAAACAAAATTAGGGAGAAAAC 57.535 33.333 0.00 0.00 0.00 2.43
6540 7275 9.448294 CTTAGCAAATAAGATGAGAAATCTTGC 57.552 33.333 10.18 6.31 43.17 4.01
6677 7412 6.545666 TGTGATCATTGAGCCGGTTATTTTAT 59.454 34.615 1.90 0.00 0.00 1.40
6808 7553 5.886960 AATTGTGTAGTGAAGATTCTGGC 57.113 39.130 0.00 0.00 0.00 4.85
6826 7571 1.135315 CGCTCATTTGGAACTGGCG 59.865 57.895 0.00 0.00 35.54 5.69
6855 7601 0.181824 ACGGTGGCAGTTGTTAAGGT 59.818 50.000 0.00 0.00 0.00 3.50
6859 7605 1.607148 GTGGCAGTTGTTAAGGTCCAC 59.393 52.381 0.00 0.00 36.20 4.02
6860 7606 1.213182 TGGCAGTTGTTAAGGTCCACA 59.787 47.619 0.00 0.00 0.00 4.17
6861 7607 2.158534 TGGCAGTTGTTAAGGTCCACAT 60.159 45.455 0.00 0.00 0.00 3.21
6862 7608 2.228822 GGCAGTTGTTAAGGTCCACATG 59.771 50.000 0.00 0.00 0.00 3.21
6863 7609 3.146066 GCAGTTGTTAAGGTCCACATGA 58.854 45.455 0.00 0.00 0.00 3.07
6864 7610 3.058224 GCAGTTGTTAAGGTCCACATGAC 60.058 47.826 0.00 0.00 43.67 3.06
6865 7611 4.133820 CAGTTGTTAAGGTCCACATGACA 58.866 43.478 0.00 0.00 46.38 3.58
6866 7612 4.214119 CAGTTGTTAAGGTCCACATGACAG 59.786 45.833 0.00 0.00 46.38 3.51
6867 7613 3.417069 TGTTAAGGTCCACATGACAGG 57.583 47.619 0.00 0.00 46.38 4.00
6868 7614 2.976185 TGTTAAGGTCCACATGACAGGA 59.024 45.455 0.00 0.39 46.38 3.86
6869 7615 3.392947 TGTTAAGGTCCACATGACAGGAA 59.607 43.478 0.00 0.00 46.38 3.36
6870 7616 4.042809 TGTTAAGGTCCACATGACAGGAAT 59.957 41.667 0.00 0.00 46.38 3.01
6871 7617 3.814504 AAGGTCCACATGACAGGAATT 57.185 42.857 0.00 0.24 46.38 2.17
6872 7618 4.927267 AAGGTCCACATGACAGGAATTA 57.073 40.909 0.00 0.00 46.38 1.40
6873 7619 4.494091 AGGTCCACATGACAGGAATTAG 57.506 45.455 0.00 0.00 46.38 1.73
6874 7620 3.846588 AGGTCCACATGACAGGAATTAGT 59.153 43.478 0.00 0.00 46.38 2.24
6875 7621 4.289672 AGGTCCACATGACAGGAATTAGTT 59.710 41.667 0.00 0.00 46.38 2.24
6876 7622 4.396166 GGTCCACATGACAGGAATTAGTTG 59.604 45.833 0.00 0.00 46.38 3.16
6877 7623 5.245531 GTCCACATGACAGGAATTAGTTGA 58.754 41.667 0.00 0.00 43.85 3.18
6878 7624 5.882557 GTCCACATGACAGGAATTAGTTGAT 59.117 40.000 0.00 0.00 43.85 2.57
6879 7625 6.375455 GTCCACATGACAGGAATTAGTTGATT 59.625 38.462 0.00 0.00 43.85 2.57
6880 7626 7.552687 GTCCACATGACAGGAATTAGTTGATTA 59.447 37.037 0.00 0.00 43.85 1.75
6881 7627 8.106462 TCCACATGACAGGAATTAGTTGATTAA 58.894 33.333 0.00 0.00 0.00 1.40
6882 7628 8.906867 CCACATGACAGGAATTAGTTGATTAAT 58.093 33.333 0.00 0.00 0.00 1.40
6888 7634 9.788960 GACAGGAATTAGTTGATTAATTGTTCC 57.211 33.333 0.00 0.00 34.31 3.62
6889 7635 9.308000 ACAGGAATTAGTTGATTAATTGTTCCA 57.692 29.630 11.39 0.00 34.31 3.53
7054 7806 2.122783 TTATTTTGTGGCCGAGGAGG 57.877 50.000 0.00 0.00 44.97 4.30
7063 7815 0.464554 GGCCGAGGAGGGAAAAGATG 60.465 60.000 0.00 0.00 41.48 2.90
7065 7817 0.464554 CCGAGGAGGGAAAAGATGGC 60.465 60.000 0.00 0.00 35.97 4.40
7176 7928 1.599542 GTTGGTGCATCGCCTTATCTC 59.400 52.381 0.00 0.00 34.70 2.75
7234 7986 5.161943 AGGTTTCCACTGGTAGTACATTC 57.838 43.478 2.06 0.00 0.00 2.67
7249 8001 8.368668 GGTAGTACATTCATTAGGAGCATAACT 58.631 37.037 2.06 0.00 0.00 2.24
7250 8002 9.765795 GTAGTACATTCATTAGGAGCATAACTT 57.234 33.333 0.00 0.00 0.00 2.66
7251 8003 8.668510 AGTACATTCATTAGGAGCATAACTTG 57.331 34.615 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.816083 CGATGGTTGGCCGCGTTA 60.816 61.111 4.92 0.00 37.67 3.18
38 39 3.195698 GACGAGCGATGGTTGGCC 61.196 66.667 0.00 0.00 0.00 5.36
39 40 2.125512 AGACGAGCGATGGTTGGC 60.126 61.111 0.00 0.00 0.00 4.52
40 41 0.389817 TTCAGACGAGCGATGGTTGG 60.390 55.000 0.00 0.00 0.00 3.77
41 42 0.994995 CTTCAGACGAGCGATGGTTG 59.005 55.000 0.00 0.00 0.00 3.77
42 43 0.888619 TCTTCAGACGAGCGATGGTT 59.111 50.000 0.00 0.00 0.00 3.67
47 48 3.007635 TGTCTATTCTTCAGACGAGCGA 58.992 45.455 0.00 0.00 44.44 4.93
50 51 4.095632 TCTGCTGTCTATTCTTCAGACGAG 59.904 45.833 0.00 0.00 44.44 4.18
53 54 8.140628 TGATTATCTGCTGTCTATTCTTCAGAC 58.859 37.037 0.00 0.00 42.31 3.51
92 94 6.193514 TGATTATCTGATTCGCAAGCAAAA 57.806 33.333 0.00 0.00 37.18 2.44
93 95 5.816449 TGATTATCTGATTCGCAAGCAAA 57.184 34.783 0.00 0.00 37.18 3.68
94 96 6.707608 AGTATGATTATCTGATTCGCAAGCAA 59.292 34.615 0.00 0.00 37.18 3.91
95 97 6.146673 CAGTATGATTATCTGATTCGCAAGCA 59.853 38.462 0.00 0.00 39.69 3.91
96 98 6.532311 CAGTATGATTATCTGATTCGCAAGC 58.468 40.000 0.00 0.00 39.69 4.01
98 100 6.146673 CAGCAGTATGATTATCTGATTCGCAA 59.853 38.462 0.00 0.00 39.69 4.85
99 101 5.636543 CAGCAGTATGATTATCTGATTCGCA 59.363 40.000 0.00 0.00 39.69 5.10
100 102 5.445673 GCAGCAGTATGATTATCTGATTCGC 60.446 44.000 0.00 0.00 39.69 4.70
101 103 5.868258 AGCAGCAGTATGATTATCTGATTCG 59.132 40.000 0.00 0.00 39.69 3.34
102 104 7.670009 AAGCAGCAGTATGATTATCTGATTC 57.330 36.000 0.00 0.00 39.69 2.52
103 105 7.174599 GGAAAGCAGCAGTATGATTATCTGATT 59.825 37.037 0.00 0.00 39.69 2.57
105 107 5.994054 GGAAAGCAGCAGTATGATTATCTGA 59.006 40.000 0.00 0.00 39.69 3.27
106 108 5.761726 TGGAAAGCAGCAGTATGATTATCTG 59.238 40.000 0.00 0.00 39.69 2.90
107 109 5.933617 TGGAAAGCAGCAGTATGATTATCT 58.066 37.500 0.00 0.00 39.69 1.98
108 110 6.624352 TTGGAAAGCAGCAGTATGATTATC 57.376 37.500 0.00 0.00 39.69 1.75
110 112 6.830324 AGATTTGGAAAGCAGCAGTATGATTA 59.170 34.615 0.00 0.00 39.69 1.75
113 115 4.592942 AGATTTGGAAAGCAGCAGTATGA 58.407 39.130 0.00 0.00 39.69 2.15
138 140 5.277731 GCTCCTCCGTACACTGTAATACTAC 60.278 48.000 0.00 0.00 0.00 2.73
141 143 3.379372 TGCTCCTCCGTACACTGTAATAC 59.621 47.826 0.00 0.00 0.00 1.89
143 145 2.427453 CTGCTCCTCCGTACACTGTAAT 59.573 50.000 0.00 0.00 0.00 1.89
144 146 1.816835 CTGCTCCTCCGTACACTGTAA 59.183 52.381 0.00 0.00 0.00 2.41
151 157 1.731093 GCTCTCTGCTCCTCCGTAC 59.269 63.158 0.00 0.00 38.95 3.67
178 184 1.228154 AGTTTCACGGCCCTTGTCC 60.228 57.895 0.00 0.00 0.00 4.02
180 186 2.193536 GCAGTTTCACGGCCCTTGT 61.194 57.895 0.00 0.00 33.12 3.16
181 187 1.733402 TTGCAGTTTCACGGCCCTTG 61.733 55.000 0.00 0.00 38.55 3.61
187 193 3.730715 GTCATTTTCTTGCAGTTTCACGG 59.269 43.478 0.00 0.00 0.00 4.94
188 194 3.418619 CGTCATTTTCTTGCAGTTTCACG 59.581 43.478 0.00 0.00 0.00 4.35
195 201 0.883833 AGCCCGTCATTTTCTTGCAG 59.116 50.000 0.00 0.00 0.00 4.41
248 254 2.047274 CACGACGCCCCATGAAGT 60.047 61.111 0.00 0.00 0.00 3.01
249 255 2.819595 CCACGACGCCCCATGAAG 60.820 66.667 0.00 0.00 0.00 3.02
373 381 2.257207 CTAGACAGGGTTGGGAGTTCA 58.743 52.381 0.00 0.00 0.00 3.18
374 382 2.258109 ACTAGACAGGGTTGGGAGTTC 58.742 52.381 0.00 0.00 0.00 3.01
375 383 2.417719 ACTAGACAGGGTTGGGAGTT 57.582 50.000 0.00 0.00 0.00 3.01
434 442 1.851304 ACGCCAATGTCCAATGGATT 58.149 45.000 4.81 0.00 39.12 3.01
435 443 1.477700 CAACGCCAATGTCCAATGGAT 59.522 47.619 4.81 0.00 39.12 3.41
480 488 4.042187 AGCCTGAACTAGATGGTTGTTTCT 59.958 41.667 0.00 0.00 0.00 2.52
481 489 4.327680 AGCCTGAACTAGATGGTTGTTTC 58.672 43.478 0.00 0.00 0.00 2.78
483 491 3.307762 GGAGCCTGAACTAGATGGTTGTT 60.308 47.826 0.00 0.00 0.00 2.83
484 492 2.237392 GGAGCCTGAACTAGATGGTTGT 59.763 50.000 0.00 0.00 0.00 3.32
485 493 2.237143 TGGAGCCTGAACTAGATGGTTG 59.763 50.000 0.00 0.00 0.00 3.77
486 494 2.237392 GTGGAGCCTGAACTAGATGGTT 59.763 50.000 0.00 0.00 0.00 3.67
487 495 1.834263 GTGGAGCCTGAACTAGATGGT 59.166 52.381 0.00 0.00 0.00 3.55
488 496 1.833630 TGTGGAGCCTGAACTAGATGG 59.166 52.381 0.00 0.00 0.00 3.51
489 497 3.118482 ACATGTGGAGCCTGAACTAGATG 60.118 47.826 0.00 0.00 0.00 2.90
490 498 3.110705 ACATGTGGAGCCTGAACTAGAT 58.889 45.455 0.00 0.00 0.00 1.98
491 499 2.540383 ACATGTGGAGCCTGAACTAGA 58.460 47.619 0.00 0.00 0.00 2.43
492 500 3.340814 AACATGTGGAGCCTGAACTAG 57.659 47.619 0.00 0.00 0.00 2.57
493 501 3.788227 AAACATGTGGAGCCTGAACTA 57.212 42.857 0.00 0.00 0.00 2.24
494 502 2.664402 AAACATGTGGAGCCTGAACT 57.336 45.000 0.00 0.00 0.00 3.01
495 503 3.189287 CACTAAACATGTGGAGCCTGAAC 59.811 47.826 0.00 0.00 0.00 3.18
496 504 3.411446 CACTAAACATGTGGAGCCTGAA 58.589 45.455 0.00 0.00 0.00 3.02
497 505 2.875672 GCACTAAACATGTGGAGCCTGA 60.876 50.000 0.00 0.00 36.08 3.86
498 506 1.470098 GCACTAAACATGTGGAGCCTG 59.530 52.381 0.00 0.00 36.08 4.85
499 507 1.352352 AGCACTAAACATGTGGAGCCT 59.648 47.619 0.00 0.00 36.08 4.58
500 508 1.470098 CAGCACTAAACATGTGGAGCC 59.530 52.381 0.00 0.00 36.08 4.70
501 509 2.426522 TCAGCACTAAACATGTGGAGC 58.573 47.619 0.00 3.67 36.08 4.70
502 510 4.095483 GGATTCAGCACTAAACATGTGGAG 59.905 45.833 0.00 2.03 36.08 3.86
503 511 4.009675 GGATTCAGCACTAAACATGTGGA 58.990 43.478 0.00 0.00 36.08 4.02
504 512 3.758023 TGGATTCAGCACTAAACATGTGG 59.242 43.478 0.00 0.00 36.08 4.17
505 513 4.216042 TGTGGATTCAGCACTAAACATGTG 59.784 41.667 0.00 0.00 38.36 3.21
506 514 4.397420 TGTGGATTCAGCACTAAACATGT 58.603 39.130 0.00 0.00 0.00 3.21
507 515 4.978186 CTGTGGATTCAGCACTAAACATG 58.022 43.478 0.00 0.00 0.00 3.21
518 526 1.159285 TTCTTGCGCTGTGGATTCAG 58.841 50.000 9.73 0.00 38.35 3.02
519 527 1.825090 ATTCTTGCGCTGTGGATTCA 58.175 45.000 9.73 0.00 0.00 2.57
520 528 2.677836 TGTATTCTTGCGCTGTGGATTC 59.322 45.455 9.73 0.00 0.00 2.52
521 529 2.710377 TGTATTCTTGCGCTGTGGATT 58.290 42.857 9.73 1.08 0.00 3.01
522 530 2.401583 TGTATTCTTGCGCTGTGGAT 57.598 45.000 9.73 1.21 0.00 3.41
523 531 2.076100 CTTGTATTCTTGCGCTGTGGA 58.924 47.619 9.73 0.00 0.00 4.02
524 532 1.131126 CCTTGTATTCTTGCGCTGTGG 59.869 52.381 9.73 0.00 0.00 4.17
525 533 1.806542 ACCTTGTATTCTTGCGCTGTG 59.193 47.619 9.73 0.00 0.00 3.66
526 534 2.185004 ACCTTGTATTCTTGCGCTGT 57.815 45.000 9.73 0.00 0.00 4.40
527 535 2.029244 CGTACCTTGTATTCTTGCGCTG 59.971 50.000 9.73 1.08 0.00 5.18
528 536 2.268298 CGTACCTTGTATTCTTGCGCT 58.732 47.619 9.73 0.00 0.00 5.92
529 537 1.267383 GCGTACCTTGTATTCTTGCGC 60.267 52.381 0.00 0.00 35.77 6.09
530 538 1.006391 CGCGTACCTTGTATTCTTGCG 60.006 52.381 0.00 0.00 36.96 4.85
531 539 2.264813 TCGCGTACCTTGTATTCTTGC 58.735 47.619 5.77 0.00 0.00 4.01
532 540 2.858344 CCTCGCGTACCTTGTATTCTTG 59.142 50.000 5.77 0.00 0.00 3.02
533 541 2.756760 TCCTCGCGTACCTTGTATTCTT 59.243 45.455 5.77 0.00 0.00 2.52
534 542 2.358267 CTCCTCGCGTACCTTGTATTCT 59.642 50.000 5.77 0.00 0.00 2.40
535 543 2.098770 ACTCCTCGCGTACCTTGTATTC 59.901 50.000 5.77 0.00 0.00 1.75
536 544 2.097825 ACTCCTCGCGTACCTTGTATT 58.902 47.619 5.77 0.00 0.00 1.89
537 545 1.760192 ACTCCTCGCGTACCTTGTAT 58.240 50.000 5.77 0.00 0.00 2.29
538 546 1.470098 GAACTCCTCGCGTACCTTGTA 59.530 52.381 5.77 0.00 0.00 2.41
539 547 0.243095 GAACTCCTCGCGTACCTTGT 59.757 55.000 5.77 0.00 0.00 3.16
540 548 0.242825 TGAACTCCTCGCGTACCTTG 59.757 55.000 5.77 0.00 0.00 3.61
541 549 1.183549 ATGAACTCCTCGCGTACCTT 58.816 50.000 5.77 0.00 0.00 3.50
542 550 1.135083 CAATGAACTCCTCGCGTACCT 60.135 52.381 5.77 0.00 0.00 3.08
543 551 1.278238 CAATGAACTCCTCGCGTACC 58.722 55.000 5.77 0.00 0.00 3.34
544 552 1.918609 GACAATGAACTCCTCGCGTAC 59.081 52.381 5.77 0.00 0.00 3.67
545 553 1.816835 AGACAATGAACTCCTCGCGTA 59.183 47.619 5.77 0.00 0.00 4.42
546 554 0.603569 AGACAATGAACTCCTCGCGT 59.396 50.000 5.77 0.00 0.00 6.01
547 555 0.994995 CAGACAATGAACTCCTCGCG 59.005 55.000 0.00 0.00 0.00 5.87
548 556 1.066858 TCCAGACAATGAACTCCTCGC 60.067 52.381 0.00 0.00 0.00 5.03
549 557 2.886081 CTCCAGACAATGAACTCCTCG 58.114 52.381 0.00 0.00 0.00 4.63
550 558 2.626840 GCTCCAGACAATGAACTCCTC 58.373 52.381 0.00 0.00 0.00 3.71
551 559 1.280421 GGCTCCAGACAATGAACTCCT 59.720 52.381 0.00 0.00 0.00 3.69
552 560 1.280421 AGGCTCCAGACAATGAACTCC 59.720 52.381 0.00 0.00 0.00 3.85
553 561 2.354259 CAGGCTCCAGACAATGAACTC 58.646 52.381 0.00 0.00 0.00 3.01
554 562 1.004044 CCAGGCTCCAGACAATGAACT 59.996 52.381 0.00 0.00 0.00 3.01
555 563 1.457346 CCAGGCTCCAGACAATGAAC 58.543 55.000 0.00 0.00 0.00 3.18
556 564 0.322816 GCCAGGCTCCAGACAATGAA 60.323 55.000 3.29 0.00 0.00 2.57
557 565 1.300963 GCCAGGCTCCAGACAATGA 59.699 57.895 3.29 0.00 0.00 2.57
561 569 2.401699 CTGTTGCCAGGCTCCAGACA 62.402 60.000 20.50 12.71 34.90 3.41
634 1097 0.541063 TACCAAGTCCGAGCTGTCCA 60.541 55.000 0.00 0.00 0.00 4.02
636 1099 2.338500 CTTTACCAAGTCCGAGCTGTC 58.662 52.381 0.00 0.00 0.00 3.51
665 1128 9.869844 GAAATCACTGTGCATATGATACTAAAC 57.130 33.333 6.97 0.00 32.74 2.01
666 1129 9.612066 TGAAATCACTGTGCATATGATACTAAA 57.388 29.630 6.97 0.00 32.74 1.85
670 1133 7.719778 TCTGAAATCACTGTGCATATGATAC 57.280 36.000 6.97 5.27 32.74 2.24
671 1134 8.735692 TTTCTGAAATCACTGTGCATATGATA 57.264 30.769 6.97 0.00 32.74 2.15
697 1160 8.184192 CGAACTCTGTAAATATCATGCCTTTTT 58.816 33.333 0.00 0.00 0.00 1.94
698 1161 7.679638 GCGAACTCTGTAAATATCATGCCTTTT 60.680 37.037 0.00 0.00 0.00 2.27
699 1162 6.238484 GCGAACTCTGTAAATATCATGCCTTT 60.238 38.462 0.00 0.00 0.00 3.11
700 1163 5.237344 GCGAACTCTGTAAATATCATGCCTT 59.763 40.000 0.00 0.00 0.00 4.35
706 1169 4.746535 TGGGCGAACTCTGTAAATATCA 57.253 40.909 0.00 0.00 0.00 2.15
707 1170 6.366332 CACTATGGGCGAACTCTGTAAATATC 59.634 42.308 0.00 0.00 0.00 1.63
709 1172 5.597806 CACTATGGGCGAACTCTGTAAATA 58.402 41.667 0.00 0.00 0.00 1.40
710 1173 4.442706 CACTATGGGCGAACTCTGTAAAT 58.557 43.478 0.00 0.00 0.00 1.40
711 1174 3.857052 CACTATGGGCGAACTCTGTAAA 58.143 45.455 0.00 0.00 0.00 2.01
712 1175 2.418197 GCACTATGGGCGAACTCTGTAA 60.418 50.000 0.00 0.00 0.00 2.41
713 1176 1.136305 GCACTATGGGCGAACTCTGTA 59.864 52.381 0.00 0.00 0.00 2.74
714 1177 0.108138 GCACTATGGGCGAACTCTGT 60.108 55.000 0.00 0.00 0.00 3.41
715 1178 0.108186 TGCACTATGGGCGAACTCTG 60.108 55.000 0.00 0.00 0.00 3.35
716 1179 0.176680 CTGCACTATGGGCGAACTCT 59.823 55.000 0.00 0.00 0.00 3.24
717 1180 0.811616 CCTGCACTATGGGCGAACTC 60.812 60.000 0.00 0.00 0.00 3.01
718 1181 1.221840 CCTGCACTATGGGCGAACT 59.778 57.895 0.00 0.00 0.00 3.01
719 1182 2.472909 GCCTGCACTATGGGCGAAC 61.473 63.158 0.00 0.00 36.37 3.95
720 1183 2.124736 GCCTGCACTATGGGCGAA 60.125 61.111 0.00 0.00 36.37 4.70
723 1186 0.466922 ATTCTGCCTGCACTATGGGC 60.467 55.000 6.96 6.96 45.45 5.36
724 1187 1.134007 TGATTCTGCCTGCACTATGGG 60.134 52.381 0.00 0.00 0.00 4.00
725 1188 2.336945 TGATTCTGCCTGCACTATGG 57.663 50.000 0.00 0.00 0.00 2.74
726 1189 3.211865 ACATGATTCTGCCTGCACTATG 58.788 45.455 0.00 0.00 0.00 2.23
727 1190 3.118149 TGACATGATTCTGCCTGCACTAT 60.118 43.478 0.00 0.00 0.00 2.12
728 1191 2.236893 TGACATGATTCTGCCTGCACTA 59.763 45.455 0.00 0.00 0.00 2.74
729 1192 1.003928 TGACATGATTCTGCCTGCACT 59.996 47.619 0.00 0.00 0.00 4.40
730 1193 1.400846 CTGACATGATTCTGCCTGCAC 59.599 52.381 0.00 0.00 0.00 4.57
760 1223 2.470621 CGTGTTCGTGACGTGATGAATG 60.471 50.000 12.82 3.19 32.06 2.67
765 1228 1.519758 GTTTCGTGTTCGTGACGTGAT 59.480 47.619 4.40 0.00 38.04 3.06
776 1240 3.945285 ACTGGATTTGACTGTTTCGTGTT 59.055 39.130 0.00 0.00 0.00 3.32
796 1260 8.988934 CAACGGTATATGAGTTATATTTGCACT 58.011 33.333 0.00 0.00 33.96 4.40
797 1261 7.744715 GCAACGGTATATGAGTTATATTTGCAC 59.255 37.037 13.25 0.00 36.73 4.57
798 1262 7.659799 AGCAACGGTATATGAGTTATATTTGCA 59.340 33.333 17.48 0.00 37.78 4.08
799 1263 8.029642 AGCAACGGTATATGAGTTATATTTGC 57.970 34.615 11.38 11.38 36.84 3.68
800 1264 9.203421 TGAGCAACGGTATATGAGTTATATTTG 57.797 33.333 0.00 0.00 33.96 2.32
801 1265 9.944376 ATGAGCAACGGTATATGAGTTATATTT 57.056 29.630 0.00 0.00 33.96 1.40
804 1268 7.396339 AGGATGAGCAACGGTATATGAGTTATA 59.604 37.037 0.00 0.00 0.00 0.98
805 1269 6.211584 AGGATGAGCAACGGTATATGAGTTAT 59.788 38.462 0.00 0.00 0.00 1.89
806 1270 5.538813 AGGATGAGCAACGGTATATGAGTTA 59.461 40.000 0.00 0.00 0.00 2.24
807 1271 4.345257 AGGATGAGCAACGGTATATGAGTT 59.655 41.667 0.00 0.00 0.00 3.01
808 1272 3.898123 AGGATGAGCAACGGTATATGAGT 59.102 43.478 0.00 0.00 0.00 3.41
809 1273 4.240888 CAGGATGAGCAACGGTATATGAG 58.759 47.826 0.00 0.00 39.69 2.90
810 1274 3.006859 CCAGGATGAGCAACGGTATATGA 59.993 47.826 0.00 0.00 39.69 2.15
811 1275 3.329386 CCAGGATGAGCAACGGTATATG 58.671 50.000 0.00 0.00 39.69 1.78
921 1388 1.753078 TGTAGCTCCCGATGCTCGT 60.753 57.895 0.00 0.00 41.46 4.18
947 1414 1.568504 TGATAAGAAGGTGCTCCGGT 58.431 50.000 0.00 0.00 39.05 5.28
949 1416 2.398498 CGATGATAAGAAGGTGCTCCG 58.602 52.381 0.00 0.00 39.05 4.63
953 1420 2.484889 GGTCCGATGATAAGAAGGTGC 58.515 52.381 0.00 0.00 0.00 5.01
955 1422 2.759355 TGGGTCCGATGATAAGAAGGT 58.241 47.619 0.00 0.00 0.00 3.50
960 1427 1.217882 GCGTTGGGTCCGATGATAAG 58.782 55.000 0.73 0.00 0.00 1.73
1608 2084 4.161976 TCGCGCGAGAAGGAGACG 62.162 66.667 31.40 0.00 0.00 4.18
1858 2334 2.507992 GAGCACGAGCAGCACGAT 60.508 61.111 19.68 4.24 45.49 3.73
1969 2445 2.166459 TGACGTCCTTCATCATCTGGTC 59.834 50.000 14.12 0.00 0.00 4.02
1970 2446 2.167281 CTGACGTCCTTCATCATCTGGT 59.833 50.000 14.12 0.00 0.00 4.00
1971 2447 2.482664 CCTGACGTCCTTCATCATCTGG 60.483 54.545 14.12 0.00 0.00 3.86
1983 2459 1.520342 GCTGATCTGCCTGACGTCC 60.520 63.158 14.12 0.00 0.00 4.79
2035 2511 3.130160 ACCGAGGTACGCTCCGAC 61.130 66.667 0.00 0.00 41.07 4.79
2066 2542 0.953727 TGGCATGTCAGAACAACAGC 59.046 50.000 0.00 0.00 39.30 4.40
2083 2573 6.349115 GCAGTAGATTTATGCATGAGGAATGG 60.349 42.308 10.16 0.00 39.75 3.16
2098 2588 5.683509 GCTCATCAGTACTGGCAGTAGATTT 60.684 44.000 26.87 10.75 30.12 2.17
2341 2834 2.230266 GTGTTTTTGTGGATACGGGCAT 59.770 45.455 0.00 0.00 42.51 4.40
2352 2845 5.540911 AGGATTTAGCCATGTGTTTTTGTG 58.459 37.500 0.00 0.00 0.00 3.33
2354 2847 5.170748 GGAGGATTTAGCCATGTGTTTTTG 58.829 41.667 0.00 0.00 0.00 2.44
2355 2848 4.222810 GGGAGGATTTAGCCATGTGTTTTT 59.777 41.667 0.00 0.00 0.00 1.94
2360 2856 2.579873 CTGGGAGGATTTAGCCATGTG 58.420 52.381 0.00 0.00 0.00 3.21
2369 2865 0.466124 GTAGAGCGCTGGGAGGATTT 59.534 55.000 18.48 0.00 0.00 2.17
2387 2883 2.838736 CACAAGTACAGCAGTTCAGGT 58.161 47.619 0.00 0.00 0.00 4.00
2414 2910 1.406539 GCACAAACCCTGCCATCTATG 59.593 52.381 0.00 0.00 0.00 2.23
2439 2937 2.612972 GCCGAAGATGAAGGTGAAGACA 60.613 50.000 0.00 0.00 0.00 3.41
2588 3086 2.095364 CAGCCATCAGTGAGCAAGAAAC 60.095 50.000 7.08 0.00 0.00 2.78
2590 3088 1.348696 TCAGCCATCAGTGAGCAAGAA 59.651 47.619 7.08 0.00 0.00 2.52
2591 3089 0.978907 TCAGCCATCAGTGAGCAAGA 59.021 50.000 7.08 2.22 0.00 3.02
2592 3090 1.738350 CTTCAGCCATCAGTGAGCAAG 59.262 52.381 7.08 0.00 0.00 4.01
2593 3091 1.612462 CCTTCAGCCATCAGTGAGCAA 60.612 52.381 7.08 0.00 0.00 3.91
2595 3093 0.747283 CCCTTCAGCCATCAGTGAGC 60.747 60.000 0.00 0.00 0.00 4.26
2596 3094 0.907486 TCCCTTCAGCCATCAGTGAG 59.093 55.000 0.00 0.00 0.00 3.51
2598 3096 1.815003 GTTTCCCTTCAGCCATCAGTG 59.185 52.381 0.00 0.00 0.00 3.66
2601 3099 1.704628 TCAGTTTCCCTTCAGCCATCA 59.295 47.619 0.00 0.00 0.00 3.07
2602 3100 2.087646 GTCAGTTTCCCTTCAGCCATC 58.912 52.381 0.00 0.00 0.00 3.51
2603 3101 1.425066 TGTCAGTTTCCCTTCAGCCAT 59.575 47.619 0.00 0.00 0.00 4.40
2604 3102 0.843309 TGTCAGTTTCCCTTCAGCCA 59.157 50.000 0.00 0.00 0.00 4.75
2605 3103 1.815003 CATGTCAGTTTCCCTTCAGCC 59.185 52.381 0.00 0.00 0.00 4.85
2606 3104 1.200948 GCATGTCAGTTTCCCTTCAGC 59.799 52.381 0.00 0.00 0.00 4.26
2663 3167 1.992170 ACGACGCCTAGTTGTTGATC 58.008 50.000 0.00 0.00 44.87 2.92
3211 3729 0.329261 CCTTGAACTCCATCCTGCCA 59.671 55.000 0.00 0.00 0.00 4.92
3268 3786 3.260884 TCAGGTTCAGGTTGTACAGGATC 59.739 47.826 0.00 0.00 0.00 3.36
3394 3970 1.080435 CGGCCGATCGATCATCCATG 61.080 60.000 24.07 7.42 0.00 3.66
3414 3990 7.502226 TCCAACAAGATACAGTTTGAACTTCAT 59.498 33.333 0.00 0.00 37.08 2.57
3421 3997 6.826231 TGAACTTCCAACAAGATACAGTTTGA 59.174 34.615 0.00 0.00 0.00 2.69
3422 3998 7.026631 TGAACTTCCAACAAGATACAGTTTG 57.973 36.000 0.00 0.00 0.00 2.93
3423 3999 7.651808 CATGAACTTCCAACAAGATACAGTTT 58.348 34.615 0.00 0.00 0.00 2.66
3424 4000 6.294176 GCATGAACTTCCAACAAGATACAGTT 60.294 38.462 0.00 0.00 0.00 3.16
3425 4001 5.182001 GCATGAACTTCCAACAAGATACAGT 59.818 40.000 0.00 0.00 0.00 3.55
3428 4004 5.627499 TGCATGAACTTCCAACAAGATAC 57.373 39.130 0.00 0.00 0.00 2.24
3429 4005 6.647334 TTTGCATGAACTTCCAACAAGATA 57.353 33.333 0.00 0.00 0.00 1.98
3430 4006 5.534207 TTTGCATGAACTTCCAACAAGAT 57.466 34.783 0.00 0.00 0.00 2.40
3431 4007 4.998671 TTTGCATGAACTTCCAACAAGA 57.001 36.364 0.00 0.00 0.00 3.02
3432 4008 5.524646 ACAATTTGCATGAACTTCCAACAAG 59.475 36.000 0.00 0.00 0.00 3.16
3433 4009 5.426504 ACAATTTGCATGAACTTCCAACAA 58.573 33.333 0.00 0.00 0.00 2.83
3434 4010 5.021033 ACAATTTGCATGAACTTCCAACA 57.979 34.783 0.00 0.00 0.00 3.33
3435 4011 6.033831 CGATACAATTTGCATGAACTTCCAAC 59.966 38.462 0.00 0.00 0.00 3.77
3436 4012 6.092092 CGATACAATTTGCATGAACTTCCAA 58.908 36.000 0.00 0.00 0.00 3.53
3437 4013 5.182950 ACGATACAATTTGCATGAACTTCCA 59.817 36.000 0.00 0.00 0.00 3.53
3438 4014 5.512788 CACGATACAATTTGCATGAACTTCC 59.487 40.000 0.00 0.00 0.00 3.46
3439 4015 6.086222 ACACGATACAATTTGCATGAACTTC 58.914 36.000 0.00 0.00 0.00 3.01
3440 4016 6.012658 ACACGATACAATTTGCATGAACTT 57.987 33.333 0.00 0.00 0.00 2.66
3441 4017 5.627499 ACACGATACAATTTGCATGAACT 57.373 34.783 0.00 0.00 0.00 3.01
3442 4018 5.060816 CCAACACGATACAATTTGCATGAAC 59.939 40.000 0.00 0.00 0.00 3.18
3443 4019 5.159925 CCAACACGATACAATTTGCATGAA 58.840 37.500 0.00 0.00 0.00 2.57
3453 4029 2.032302 GCACACAACCAACACGATACAA 59.968 45.455 0.00 0.00 0.00 2.41
3505 4081 1.738099 CTTGAGGTTCAGCGACCCG 60.738 63.158 3.73 0.00 40.73 5.28
3740 4347 1.411977 CAGACTAGTGAGGCCATCCTG 59.588 57.143 5.01 0.00 44.46 3.86
3742 4349 1.410882 GACAGACTAGTGAGGCCATCC 59.589 57.143 5.01 0.00 0.00 3.51
3802 4524 4.430765 CGCGGTCGCCAACCTAGT 62.431 66.667 9.85 0.00 46.87 2.57
4181 4903 4.690719 CTGTTGTACCCCGCCGCA 62.691 66.667 0.00 0.00 0.00 5.69
4232 4954 1.012486 CGCCGTACCTTGACTTGGAC 61.012 60.000 0.00 0.00 0.00 4.02
4241 4963 2.510691 CGAATGCCGCCGTACCTT 60.511 61.111 0.00 0.00 0.00 3.50
4331 5056 0.669932 GCTGCAGCTCCCATATCTCG 60.670 60.000 31.33 0.00 38.21 4.04
4415 5140 4.021925 AGGAGCAGCGGGAACACC 62.022 66.667 0.00 0.00 0.00 4.16
4463 5188 0.037326 GCCTCATCTTGTCCGTGTCA 60.037 55.000 0.00 0.00 0.00 3.58
4808 5533 2.812499 CAGGCCATGGCAATGAGC 59.188 61.111 36.56 18.94 44.11 4.26
4811 5536 2.185867 GTGCAGGCCATGGCAATG 59.814 61.111 36.56 31.83 42.45 2.82
4841 5566 3.068691 TTGAGGTAGCTCGCGCCT 61.069 61.111 16.71 0.17 36.60 5.52
5180 5905 2.896443 CCCACGGAGAAGGAGCTC 59.104 66.667 4.71 4.71 0.00 4.09
5567 6292 2.102749 CCCACCATTGCGCATTCG 59.897 61.111 12.75 2.45 39.07 3.34
5598 6323 4.416516 TCTCTGATAGACCCACTGAACAA 58.583 43.478 0.00 0.00 0.00 2.83
5789 6514 9.553064 AAATACAAATGTTAAGTTTGGCATTGA 57.447 25.926 14.40 0.00 40.08 2.57
5884 6609 4.321675 CCTGCCAAAAATAAGCGGTTAGTT 60.322 41.667 13.71 13.71 0.00 2.24
5912 6638 2.203907 AGCTGCACCCCACTCTCT 60.204 61.111 1.02 0.00 0.00 3.10
5942 6668 1.293924 CGATCGCAATCCTCTGCTTT 58.706 50.000 0.26 0.00 40.33 3.51
6245 6971 2.159787 TCGTTCTGTACTCTACGCGAAC 60.160 50.000 15.93 0.86 37.86 3.95
6257 6983 5.391310 GGATCAGTTCGTAGTTCGTTCTGTA 60.391 44.000 0.00 4.82 39.69 2.74
6259 6985 3.852536 GGATCAGTTCGTAGTTCGTTCTG 59.147 47.826 0.00 8.84 39.87 3.02
6260 6986 3.119566 GGGATCAGTTCGTAGTTCGTTCT 60.120 47.826 0.00 0.00 40.80 3.01
6261 6987 3.177487 GGGATCAGTTCGTAGTTCGTTC 58.823 50.000 0.00 0.00 40.80 3.95
6262 6988 2.559668 TGGGATCAGTTCGTAGTTCGTT 59.440 45.455 0.00 0.00 40.80 3.85
6264 6990 2.798680 CTGGGATCAGTTCGTAGTTCG 58.201 52.381 0.00 0.00 37.27 3.95
6508 7242 6.513180 TCTCATCTTATTTGCTAAGTACGGG 58.487 40.000 0.00 0.00 38.40 5.28
6540 7275 2.401592 CTCGCCTGTCTCGTCGAG 59.598 66.667 16.33 16.33 41.66 4.04
6677 7412 1.106351 ATGCCCAGCACGACAACAAA 61.106 50.000 0.00 0.00 43.04 2.83
6808 7553 1.135315 CGCCAGTTCCAAATGAGCG 59.865 57.895 7.76 7.76 37.35 5.03
6826 7571 0.802494 CTGCCACCGTTAACATGGTC 59.198 55.000 21.24 15.62 40.77 4.02
6855 7601 5.497464 TCAACTAATTCCTGTCATGTGGA 57.503 39.130 0.00 0.00 0.00 4.02
6862 7608 9.788960 GGAACAATTAATCAACTAATTCCTGTC 57.211 33.333 0.00 0.00 30.67 3.51
6863 7609 9.308000 TGGAACAATTAATCAACTAATTCCTGT 57.692 29.630 0.00 0.00 30.67 4.00
6864 7610 9.793252 CTGGAACAATTAATCAACTAATTCCTG 57.207 33.333 0.00 0.00 38.70 3.86
6865 7611 9.753674 TCTGGAACAATTAATCAACTAATTCCT 57.246 29.630 0.00 0.00 38.70 3.36
6866 7612 9.788960 GTCTGGAACAATTAATCAACTAATTCC 57.211 33.333 0.00 0.00 38.70 3.01
6883 7629 5.185249 GGTAGAGTACTGATTGTCTGGAACA 59.815 44.000 0.00 0.00 35.59 3.18
6884 7630 5.419471 AGGTAGAGTACTGATTGTCTGGAAC 59.581 44.000 0.00 0.00 0.00 3.62
6885 7631 5.580998 AGGTAGAGTACTGATTGTCTGGAA 58.419 41.667 0.00 0.00 0.00 3.53
6886 7632 5.194473 AGGTAGAGTACTGATTGTCTGGA 57.806 43.478 0.00 0.00 0.00 3.86
6887 7633 5.923733 AAGGTAGAGTACTGATTGTCTGG 57.076 43.478 0.00 0.00 0.00 3.86
6888 7634 6.528423 CGAAAAGGTAGAGTACTGATTGTCTG 59.472 42.308 0.00 0.00 0.00 3.51
6889 7635 6.208994 ACGAAAAGGTAGAGTACTGATTGTCT 59.791 38.462 0.00 0.00 0.00 3.41
6899 7645 7.108841 AGCATCATAACGAAAAGGTAGAGTA 57.891 36.000 0.00 0.00 0.00 2.59
6900 7646 5.978814 AGCATCATAACGAAAAGGTAGAGT 58.021 37.500 0.00 0.00 0.00 3.24
7054 7806 3.191371 ACAGTTTCGATGCCATCTTTTCC 59.809 43.478 2.75 0.00 0.00 3.13
7063 7815 4.425577 AGAAAATGACAGTTTCGATGCC 57.574 40.909 19.40 0.00 39.48 4.40
7065 7817 8.781067 TTGTAAAGAAAATGACAGTTTCGATG 57.219 30.769 19.40 0.00 39.48 3.84
7176 7928 1.064060 GGCGGAAGAAATTGGACATCG 59.936 52.381 0.00 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.