Multiple sequence alignment - TraesCS4D01G296800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G296800 chr4D 100.000 3923 0 0 1 3923 465968379 465972301 0.000000e+00 7245.0
1 TraesCS4D01G296800 chr4A 95.925 2454 90 7 831 3279 4621369 4618921 0.000000e+00 3969.0
2 TraesCS4D01G296800 chr4A 93.060 317 16 4 3455 3768 4618605 4618292 3.570000e-125 459.0
3 TraesCS4D01G296800 chr4A 96.875 32 1 0 522 553 648307997 648308028 2.000000e-03 54.7
4 TraesCS4D01G296800 chr4B 94.066 2511 122 8 781 3289 583335075 583337560 0.000000e+00 3786.0
5 TraesCS4D01G296800 chr4B 93.302 642 33 8 3291 3923 583337592 583338232 0.000000e+00 939.0
6 TraesCS4D01G296800 chr4B 81.028 253 37 5 192 434 658188036 658188287 1.440000e-44 191.0
7 TraesCS4D01G296800 chr4B 93.750 112 5 2 81 192 583333070 583333179 2.420000e-37 167.0
8 TraesCS4D01G296800 chr4B 94.000 50 3 0 629 678 609325637 609325686 4.200000e-10 76.8
9 TraesCS4D01G296800 chr1D 78.342 374 62 11 192 554 25365191 25364826 1.420000e-54 224.0
10 TraesCS4D01G296800 chr1D 94.118 51 3 0 627 677 487023082 487023032 1.170000e-10 78.7
11 TraesCS4D01G296800 chr1D 94.000 50 3 0 629 678 364032298 364032347 4.200000e-10 76.8
12 TraesCS4D01G296800 chr1B 79.518 332 50 9 190 507 6791551 6791224 1.840000e-53 220.0
13 TraesCS4D01G296800 chr1B 77.912 249 47 4 194 434 676547207 676547455 8.780000e-32 148.0
14 TraesCS4D01G296800 chr1B 96.000 50 2 0 629 678 638017805 638017854 9.030000e-12 82.4
15 TraesCS4D01G296800 chr1B 82.716 81 9 4 516 596 134465179 134465254 2.530000e-07 67.6
16 TraesCS4D01G296800 chr5D 81.481 270 34 10 250 507 532229809 532229544 1.430000e-49 207.0
17 TraesCS4D01G296800 chr5D 96.000 50 2 0 629 678 150834 150785 9.030000e-12 82.4
18 TraesCS4D01G296800 chr2D 79.677 310 44 11 210 507 619442741 619442439 5.140000e-49 206.0
19 TraesCS4D01G296800 chr2D 95.385 65 3 0 1 65 155563867 155563931 1.930000e-18 104.0
20 TraesCS4D01G296800 chr2D 94.000 50 3 0 629 678 87946005 87946054 4.200000e-10 76.8
21 TraesCS4D01G296800 chr6B 80.282 284 44 5 192 466 176771647 176771367 1.850000e-48 204.0
22 TraesCS4D01G296800 chr2B 79.681 251 40 5 193 433 142542820 142542571 1.870000e-38 171.0
23 TraesCS4D01G296800 chr2B 94.000 50 3 0 629 678 21741159 21741208 4.200000e-10 76.8
24 TraesCS4D01G296800 chr3B 79.087 263 39 9 194 445 825097838 825097581 2.420000e-37 167.0
25 TraesCS4D01G296800 chr3B 90.909 55 3 2 629 683 524443389 524443337 5.440000e-09 73.1
26 TraesCS4D01G296800 chr2A 94.937 79 4 0 2 80 40831112 40831190 1.480000e-24 124.0
27 TraesCS4D01G296800 chr2A 91.250 80 6 1 2 80 427338766 427338845 1.490000e-19 108.0
28 TraesCS4D01G296800 chr5B 93.671 79 5 0 2 80 704398211 704398133 6.890000e-23 119.0
29 TraesCS4D01G296800 chr1A 96.875 64 2 0 2 65 265535686 265535749 1.490000e-19 108.0
30 TraesCS4D01G296800 chr7D 95.385 65 2 1 2 65 47460735 47460671 6.930000e-18 102.0
31 TraesCS4D01G296800 chr3D 93.939 66 1 2 2 65 59930636 59930572 3.230000e-16 97.1
32 TraesCS4D01G296800 chr6D 88.750 80 4 2 2 80 397626371 397626296 4.170000e-15 93.5
33 TraesCS4D01G296800 chr7B 87.500 80 9 1 2 80 556670235 556670156 1.500000e-14 91.6
34 TraesCS4D01G296800 chr7B 98.000 50 1 0 629 678 592548027 592548076 1.940000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G296800 chr4D 465968379 465972301 3922 False 7245.000000 7245 100.0000 1 3923 1 chr4D.!!$F1 3922
1 TraesCS4D01G296800 chr4A 4618292 4621369 3077 True 2214.000000 3969 94.4925 831 3768 2 chr4A.!!$R1 2937
2 TraesCS4D01G296800 chr4B 583333070 583338232 5162 False 1630.666667 3786 93.7060 81 3923 3 chr4B.!!$F3 3842

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
620 2266 0.164647 CTCTCGTGAAAGCAAAGCCG 59.835 55.0 0.0 0.0 0.00 5.52 F
622 2268 0.384725 CTCGTGAAAGCAAAGCCGTG 60.385 55.0 0.0 0.0 0.00 4.94 F
830 2476 0.387929 TAGCTATCCCGAGCCAAACG 59.612 55.0 0.0 0.0 43.97 3.60 F
2304 3953 0.662619 TGAAAGGTTTGTGCAGAGCG 59.337 50.0 0.0 0.0 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1768 3417 0.250124 TACAACCCGTTCCTGCACAG 60.250 55.000 0.00 0.0 0.0 3.66 R
2454 4103 0.962356 GGTCAGGACTGCACCCATTG 60.962 60.000 0.00 0.0 0.0 2.82 R
2766 4415 4.023137 GGCATGCACCCACTTGAT 57.977 55.556 21.36 0.0 0.0 2.57 R
3891 5692 2.231478 CCCGGTTATGCGATGAGATACT 59.769 50.000 0.00 0.0 0.0 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.030652 GGGATATGCGCCCGTTTG 58.969 61.111 4.18 0.00 35.50 2.93
43 44 2.331451 GGATATGCGCCCGTTTGC 59.669 61.111 4.18 0.00 0.00 3.68
62 63 4.445545 CGCAGCGAAGAAACGGGC 62.446 66.667 9.98 0.00 0.00 6.13
63 64 4.445545 GCAGCGAAGAAACGGGCG 62.446 66.667 0.00 0.00 0.00 6.13
75 76 2.512974 CGGGCGCCGTTTAGGATT 60.513 61.111 22.54 0.00 45.00 3.01
76 77 2.110352 CGGGCGCCGTTTAGGATTT 61.110 57.895 22.54 0.00 45.00 2.17
77 78 1.431845 GGGCGCCGTTTAGGATTTG 59.568 57.895 22.54 0.00 45.00 2.32
78 79 1.226575 GGCGCCGTTTAGGATTTGC 60.227 57.895 12.58 0.00 45.00 3.68
79 80 1.226575 GCGCCGTTTAGGATTTGCC 60.227 57.895 0.00 0.00 45.00 4.52
112 113 3.084786 AGGAGCTTCCTTTGTTGCATAC 58.915 45.455 0.00 0.00 46.91 2.39
117 118 2.507407 TCCTTTGTTGCATACTCCCC 57.493 50.000 0.00 0.00 0.00 4.81
118 119 1.094785 CCTTTGTTGCATACTCCCCG 58.905 55.000 0.00 0.00 0.00 5.73
123 124 1.084289 GTTGCATACTCCCCGTGTTC 58.916 55.000 0.00 0.00 0.00 3.18
136 137 4.475747 TCCCCGTGTTCCCTTTTATAAGAT 59.524 41.667 0.00 0.00 32.92 2.40
177 178 2.231478 TGCCCAAAACAGTTCAAAACGA 59.769 40.909 0.00 0.00 36.23 3.85
192 193 2.372148 AACGAACTGGTTAAAACGCG 57.628 45.000 3.53 3.53 0.00 6.01
193 194 1.569708 ACGAACTGGTTAAAACGCGA 58.430 45.000 15.93 0.00 0.00 5.87
194 195 1.932511 ACGAACTGGTTAAAACGCGAA 59.067 42.857 15.93 0.00 0.00 4.70
197 198 3.596562 CGAACTGGTTAAAACGCGAAATC 59.403 43.478 15.93 2.11 0.00 2.17
199 200 3.880610 ACTGGTTAAAACGCGAAATCAC 58.119 40.909 15.93 3.28 0.00 3.06
200 201 3.562557 ACTGGTTAAAACGCGAAATCACT 59.437 39.130 15.93 0.00 0.00 3.41
202 203 5.236911 ACTGGTTAAAACGCGAAATCACTAA 59.763 36.000 15.93 0.00 0.00 2.24
203 204 6.072893 ACTGGTTAAAACGCGAAATCACTAAT 60.073 34.615 15.93 0.00 0.00 1.73
204 205 6.308675 TGGTTAAAACGCGAAATCACTAATC 58.691 36.000 15.93 1.40 0.00 1.75
205 206 5.446899 GGTTAAAACGCGAAATCACTAATCG 59.553 40.000 15.93 0.00 39.47 3.34
207 208 4.500703 AAACGCGAAATCACTAATCGAG 57.499 40.909 15.93 0.00 41.23 4.04
208 209 3.416119 ACGCGAAATCACTAATCGAGA 57.584 42.857 15.93 0.00 38.41 4.04
210 211 3.791887 ACGCGAAATCACTAATCGAGAAG 59.208 43.478 15.93 0.00 38.41 2.85
211 212 3.791887 CGCGAAATCACTAATCGAGAAGT 59.208 43.478 0.00 0.00 38.41 3.01
212 213 4.968181 CGCGAAATCACTAATCGAGAAGTA 59.032 41.667 0.00 0.00 38.41 2.24
213 214 5.108705 CGCGAAATCACTAATCGAGAAGTAC 60.109 44.000 0.00 0.00 38.41 2.73
215 216 6.141053 GCGAAATCACTAATCGAGAAGTACTC 59.859 42.308 0.00 0.00 38.82 2.59
216 217 6.633634 CGAAATCACTAATCGAGAAGTACTCC 59.366 42.308 0.00 0.00 42.18 3.85
217 218 7.467539 CGAAATCACTAATCGAGAAGTACTCCT 60.468 40.741 0.00 0.00 42.18 3.69
218 219 7.648039 AATCACTAATCGAGAAGTACTCCTT 57.352 36.000 0.00 0.00 42.18 3.36
222 223 9.842775 TCACTAATCGAGAAGTACTCCTTATAA 57.157 33.333 0.00 0.00 42.18 0.98
227 228 7.261829 TCGAGAAGTACTCCTTATAAAGAGC 57.738 40.000 10.46 0.00 42.18 4.09
229 230 6.913673 CGAGAAGTACTCCTTATAAAGAGCAC 59.086 42.308 10.46 8.34 42.18 4.40
230 231 7.201750 CGAGAAGTACTCCTTATAAAGAGCACT 60.202 40.741 10.14 10.14 42.18 4.40
232 233 7.837187 AGAAGTACTCCTTATAAAGAGCACTCT 59.163 37.037 14.65 11.36 35.86 3.24
233 234 8.471609 GAAGTACTCCTTATAAAGAGCACTCTT 58.528 37.037 14.65 7.10 41.69 2.85
241 242 1.893919 AAGAGCACTCTTCCCTCCGC 61.894 60.000 7.10 0.00 46.13 5.54
242 243 2.604686 AGCACTCTTCCCTCCGCA 60.605 61.111 0.00 0.00 0.00 5.69
258 259 1.360192 GCAGGTTGTGACAAGTGGC 59.640 57.895 0.00 0.00 0.00 5.01
259 260 1.383456 GCAGGTTGTGACAAGTGGCA 61.383 55.000 0.00 0.00 0.00 4.92
280 281 1.968017 CTGGATGTGCGGCACTTGT 60.968 57.895 30.81 18.15 35.11 3.16
281 282 1.915614 CTGGATGTGCGGCACTTGTC 61.916 60.000 30.81 23.85 35.11 3.18
288 289 2.972505 CGGCACTTGTCGCAACCT 60.973 61.111 0.00 0.00 35.94 3.50
289 290 2.639286 GGCACTTGTCGCAACCTG 59.361 61.111 0.00 0.00 0.00 4.00
293 419 0.583438 CACTTGTCGCAACCTGTGAG 59.417 55.000 0.00 0.00 37.59 3.51
294 420 0.178068 ACTTGTCGCAACCTGTGAGT 59.822 50.000 0.00 0.00 37.59 3.41
340 466 6.327177 TCAAAACGTATTATCTCTTCGTGC 57.673 37.500 0.00 0.00 35.00 5.34
341 467 5.004061 TCAAAACGTATTATCTCTTCGTGCG 59.996 40.000 0.00 0.00 35.00 5.34
342 468 3.687572 ACGTATTATCTCTTCGTGCGT 57.312 42.857 0.00 0.00 33.55 5.24
344 470 2.971915 CGTATTATCTCTTCGTGCGTCC 59.028 50.000 0.00 0.00 0.00 4.79
349 1995 1.710013 TCTCTTCGTGCGTCCAAATC 58.290 50.000 0.00 0.00 0.00 2.17
356 2002 2.415168 TCGTGCGTCCAAATCTCAAATC 59.585 45.455 0.00 0.00 0.00 2.17
362 2008 4.320953 GCGTCCAAATCTCAAATCGTTTTC 59.679 41.667 0.00 0.00 0.00 2.29
363 2009 5.448438 CGTCCAAATCTCAAATCGTTTTCA 58.552 37.500 0.00 0.00 0.00 2.69
364 2010 5.339611 CGTCCAAATCTCAAATCGTTTTCAC 59.660 40.000 0.00 0.00 0.00 3.18
365 2011 6.438763 GTCCAAATCTCAAATCGTTTTCACT 58.561 36.000 0.00 0.00 0.00 3.41
366 2012 6.360681 GTCCAAATCTCAAATCGTTTTCACTG 59.639 38.462 0.00 0.00 0.00 3.66
368 2014 6.697019 CCAAATCTCAAATCGTTTTCACTGTT 59.303 34.615 0.00 0.00 0.00 3.16
370 2016 5.168526 TCTCAAATCGTTTTCACTGTTGG 57.831 39.130 0.00 0.00 0.00 3.77
372 2018 5.530915 TCTCAAATCGTTTTCACTGTTGGAT 59.469 36.000 0.00 0.00 0.00 3.41
375 2021 6.039270 TCAAATCGTTTTCACTGTTGGATTCT 59.961 34.615 0.00 0.00 0.00 2.40
376 2022 6.391227 AATCGTTTTCACTGTTGGATTCTT 57.609 33.333 0.00 0.00 0.00 2.52
379 2025 4.207019 CGTTTTCACTGTTGGATTCTTTGC 59.793 41.667 0.00 0.00 0.00 3.68
380 2026 3.624326 TTCACTGTTGGATTCTTTGCG 57.376 42.857 0.00 0.00 0.00 4.85
382 2028 2.548057 TCACTGTTGGATTCTTTGCGTC 59.452 45.455 0.00 0.00 0.00 5.19
384 2030 1.798223 CTGTTGGATTCTTTGCGTCGA 59.202 47.619 0.00 0.00 0.00 4.20
385 2031 1.798223 TGTTGGATTCTTTGCGTCGAG 59.202 47.619 0.00 0.00 0.00 4.04
386 2032 2.066262 GTTGGATTCTTTGCGTCGAGA 58.934 47.619 0.00 0.00 0.00 4.04
388 2034 2.540515 TGGATTCTTTGCGTCGAGATC 58.459 47.619 0.00 0.00 0.00 2.75
391 2037 3.244111 GGATTCTTTGCGTCGAGATCTTC 59.756 47.826 0.00 0.00 0.00 2.87
395 2041 4.055360 TCTTTGCGTCGAGATCTTCAAAA 58.945 39.130 0.00 0.00 0.00 2.44
396 2042 3.788434 TTGCGTCGAGATCTTCAAAAC 57.212 42.857 0.00 0.00 0.00 2.43
397 2043 3.026630 TGCGTCGAGATCTTCAAAACT 57.973 42.857 0.00 0.00 0.00 2.66
399 2045 4.166523 TGCGTCGAGATCTTCAAAACTAG 58.833 43.478 0.00 0.00 0.00 2.57
401 2047 4.734917 CGTCGAGATCTTCAAAACTAGGT 58.265 43.478 0.00 0.00 0.00 3.08
405 2051 5.710567 TCGAGATCTTCAAAACTAGGTCTCA 59.289 40.000 11.61 0.00 32.49 3.27
406 2052 6.378564 TCGAGATCTTCAAAACTAGGTCTCAT 59.621 38.462 11.61 0.00 32.49 2.90
407 2053 6.475076 CGAGATCTTCAAAACTAGGTCTCATG 59.525 42.308 11.61 0.00 32.49 3.07
409 2055 7.684529 AGATCTTCAAAACTAGGTCTCATGTT 58.315 34.615 0.00 0.00 0.00 2.71
410 2056 7.605691 AGATCTTCAAAACTAGGTCTCATGTTG 59.394 37.037 0.00 0.00 0.00 3.33
411 2057 6.591935 TCTTCAAAACTAGGTCTCATGTTGT 58.408 36.000 0.00 0.00 0.00 3.32
412 2058 7.054124 TCTTCAAAACTAGGTCTCATGTTGTT 58.946 34.615 0.00 0.00 0.00 2.83
413 2059 8.208224 TCTTCAAAACTAGGTCTCATGTTGTTA 58.792 33.333 0.00 0.00 0.00 2.41
415 2061 6.934645 TCAAAACTAGGTCTCATGTTGTTAGG 59.065 38.462 0.00 0.00 0.00 2.69
416 2062 6.435292 AAACTAGGTCTCATGTTGTTAGGT 57.565 37.500 0.00 0.00 0.00 3.08
417 2063 7.549147 AAACTAGGTCTCATGTTGTTAGGTA 57.451 36.000 0.00 0.00 0.00 3.08
420 2066 7.556844 ACTAGGTCTCATGTTGTTAGGTATTG 58.443 38.462 0.00 0.00 0.00 1.90
421 2067 6.620877 AGGTCTCATGTTGTTAGGTATTGA 57.379 37.500 0.00 0.00 0.00 2.57
422 2068 6.407202 AGGTCTCATGTTGTTAGGTATTGAC 58.593 40.000 0.00 0.00 0.00 3.18
423 2069 6.013725 AGGTCTCATGTTGTTAGGTATTGACA 60.014 38.462 0.00 0.00 0.00 3.58
424 2070 6.653320 GGTCTCATGTTGTTAGGTATTGACAA 59.347 38.462 0.00 0.00 0.00 3.18
426 2072 8.015658 GTCTCATGTTGTTAGGTATTGACAAAC 58.984 37.037 0.00 0.00 35.31 2.93
427 2073 7.936847 TCTCATGTTGTTAGGTATTGACAAACT 59.063 33.333 0.00 0.00 35.31 2.66
428 2074 8.458573 TCATGTTGTTAGGTATTGACAAACTT 57.541 30.769 0.00 0.00 35.31 2.66
429 2075 8.908903 TCATGTTGTTAGGTATTGACAAACTTT 58.091 29.630 0.00 0.00 35.31 2.66
430 2076 9.528018 CATGTTGTTAGGTATTGACAAACTTTT 57.472 29.630 0.00 0.00 35.31 2.27
479 2125 6.902224 AAAACCGGACAAAAAGAAGAATTG 57.098 33.333 9.46 0.00 0.00 2.32
480 2126 4.584327 ACCGGACAAAAAGAAGAATTGG 57.416 40.909 9.46 0.00 0.00 3.16
481 2127 3.320826 ACCGGACAAAAAGAAGAATTGGG 59.679 43.478 9.46 0.00 0.00 4.12
482 2128 3.572255 CCGGACAAAAAGAAGAATTGGGA 59.428 43.478 0.00 0.00 0.00 4.37
483 2129 4.321230 CCGGACAAAAAGAAGAATTGGGAG 60.321 45.833 0.00 0.00 0.00 4.30
484 2130 4.278419 CGGACAAAAAGAAGAATTGGGAGT 59.722 41.667 0.00 0.00 0.00 3.85
485 2131 5.532557 GGACAAAAAGAAGAATTGGGAGTG 58.467 41.667 0.00 0.00 0.00 3.51
486 2132 4.948847 ACAAAAAGAAGAATTGGGAGTGC 58.051 39.130 0.00 0.00 0.00 4.40
487 2133 3.923017 AAAAGAAGAATTGGGAGTGCG 57.077 42.857 0.00 0.00 0.00 5.34
488 2134 2.568623 AAGAAGAATTGGGAGTGCGT 57.431 45.000 0.00 0.00 0.00 5.24
489 2135 2.568623 AGAAGAATTGGGAGTGCGTT 57.431 45.000 0.00 0.00 0.00 4.84
490 2136 2.427506 AGAAGAATTGGGAGTGCGTTC 58.572 47.619 0.00 0.00 0.00 3.95
491 2137 2.039084 AGAAGAATTGGGAGTGCGTTCT 59.961 45.455 0.00 0.00 0.00 3.01
492 2138 2.568623 AGAATTGGGAGTGCGTTCTT 57.431 45.000 0.00 0.00 0.00 2.52
493 2139 2.863809 AGAATTGGGAGTGCGTTCTTT 58.136 42.857 0.00 0.00 0.00 2.52
494 2140 3.222603 AGAATTGGGAGTGCGTTCTTTT 58.777 40.909 0.00 0.00 0.00 2.27
495 2141 3.636764 AGAATTGGGAGTGCGTTCTTTTT 59.363 39.130 0.00 0.00 0.00 1.94
496 2142 3.643159 ATTGGGAGTGCGTTCTTTTTC 57.357 42.857 0.00 0.00 0.00 2.29
497 2143 1.314730 TGGGAGTGCGTTCTTTTTCC 58.685 50.000 0.00 0.00 0.00 3.13
498 2144 1.133915 TGGGAGTGCGTTCTTTTTCCT 60.134 47.619 0.00 0.00 0.00 3.36
499 2145 1.954382 GGGAGTGCGTTCTTTTTCCTT 59.046 47.619 0.00 0.00 0.00 3.36
500 2146 2.361119 GGGAGTGCGTTCTTTTTCCTTT 59.639 45.455 0.00 0.00 0.00 3.11
501 2147 3.181479 GGGAGTGCGTTCTTTTTCCTTTT 60.181 43.478 0.00 0.00 0.00 2.27
502 2148 4.042398 GGAGTGCGTTCTTTTTCCTTTTC 58.958 43.478 0.00 0.00 0.00 2.29
503 2149 3.691498 AGTGCGTTCTTTTTCCTTTTCG 58.309 40.909 0.00 0.00 0.00 3.46
504 2150 2.787129 GTGCGTTCTTTTTCCTTTTCGG 59.213 45.455 0.00 0.00 0.00 4.30
505 2151 2.683867 TGCGTTCTTTTTCCTTTTCGGA 59.316 40.909 0.00 0.00 41.06 4.55
512 2158 3.407443 TTCCTTTTCGGAAGCCGTT 57.593 47.368 5.71 0.00 46.80 4.44
513 2159 1.682740 TTCCTTTTCGGAAGCCGTTT 58.317 45.000 5.71 0.00 46.80 3.60
514 2160 2.025898 TTCCTTTTCGGAAGCCGTTTT 58.974 42.857 5.71 0.00 46.80 2.43
515 2161 2.427812 TTCCTTTTCGGAAGCCGTTTTT 59.572 40.909 5.71 0.00 46.80 1.94
516 2162 3.735514 TTCCTTTTCGGAAGCCGTTTTTG 60.736 43.478 5.71 0.00 46.80 2.44
517 2163 6.752037 TTCCTTTTCGGAAGCCGTTTTTGG 62.752 45.833 5.71 4.09 46.80 3.28
525 2171 2.415426 CCGTTTTTGGCCGTGCTT 59.585 55.556 0.00 0.00 0.00 3.91
526 2172 1.660264 CCGTTTTTGGCCGTGCTTC 60.660 57.895 0.00 0.00 0.00 3.86
527 2173 1.358759 CGTTTTTGGCCGTGCTTCT 59.641 52.632 0.00 0.00 0.00 2.85
528 2174 0.660300 CGTTTTTGGCCGTGCTTCTC 60.660 55.000 0.00 0.00 0.00 2.87
529 2175 0.660300 GTTTTTGGCCGTGCTTCTCG 60.660 55.000 0.00 0.00 0.00 4.04
530 2176 1.098712 TTTTTGGCCGTGCTTCTCGT 61.099 50.000 0.00 0.00 0.00 4.18
531 2177 1.781025 TTTTGGCCGTGCTTCTCGTG 61.781 55.000 0.00 0.00 0.00 4.35
532 2178 2.652382 TTTGGCCGTGCTTCTCGTGA 62.652 55.000 0.00 0.00 0.00 4.35
533 2179 2.357034 GGCCGTGCTTCTCGTGAA 60.357 61.111 0.00 0.00 0.00 3.18
534 2180 1.959226 GGCCGTGCTTCTCGTGAAA 60.959 57.895 1.12 0.00 0.00 2.69
535 2181 1.493311 GCCGTGCTTCTCGTGAAAG 59.507 57.895 1.12 0.00 0.00 2.62
536 2182 1.493311 CCGTGCTTCTCGTGAAAGC 59.507 57.895 10.73 10.73 0.00 3.51
537 2183 1.221466 CCGTGCTTCTCGTGAAAGCA 61.221 55.000 14.66 14.66 35.56 3.91
538 2184 0.581529 CGTGCTTCTCGTGAAAGCAA 59.418 50.000 18.43 5.73 37.73 3.91
539 2185 1.003972 CGTGCTTCTCGTGAAAGCAAA 60.004 47.619 18.43 1.05 37.73 3.68
540 2186 2.349817 CGTGCTTCTCGTGAAAGCAAAT 60.350 45.455 18.43 0.00 37.73 2.32
541 2187 3.229552 GTGCTTCTCGTGAAAGCAAATC 58.770 45.455 18.43 7.55 37.73 2.17
542 2188 2.226437 TGCTTCTCGTGAAAGCAAATCC 59.774 45.455 15.77 0.00 35.26 3.01
543 2189 2.726066 GCTTCTCGTGAAAGCAAATCCG 60.726 50.000 12.16 0.00 0.00 4.18
544 2190 2.163818 TCTCGTGAAAGCAAATCCGT 57.836 45.000 0.00 0.00 0.00 4.69
545 2191 1.798223 TCTCGTGAAAGCAAATCCGTG 59.202 47.619 0.00 0.00 0.00 4.94
546 2192 0.237235 TCGTGAAAGCAAATCCGTGC 59.763 50.000 0.00 0.00 45.28 5.34
547 2193 0.729140 CGTGAAAGCAAATCCGTGCC 60.729 55.000 0.00 0.00 46.14 5.01
548 2194 0.598065 GTGAAAGCAAATCCGTGCCT 59.402 50.000 0.00 0.00 46.14 4.75
549 2195 0.881118 TGAAAGCAAATCCGTGCCTC 59.119 50.000 0.00 0.00 46.14 4.70
550 2196 1.168714 GAAAGCAAATCCGTGCCTCT 58.831 50.000 0.00 0.00 46.14 3.69
551 2197 1.541588 GAAAGCAAATCCGTGCCTCTT 59.458 47.619 0.00 0.00 46.14 2.85
552 2198 2.489938 AAGCAAATCCGTGCCTCTTA 57.510 45.000 0.00 0.00 46.14 2.10
553 2199 2.717639 AGCAAATCCGTGCCTCTTAT 57.282 45.000 0.00 0.00 46.14 1.73
554 2200 3.838244 AGCAAATCCGTGCCTCTTATA 57.162 42.857 0.00 0.00 46.14 0.98
555 2201 3.467803 AGCAAATCCGTGCCTCTTATAC 58.532 45.455 0.00 0.00 46.14 1.47
556 2202 2.221055 GCAAATCCGTGCCTCTTATACG 59.779 50.000 0.00 0.00 38.66 3.06
598 2244 3.878160 TTTTTGTTTTTGAGAGGCCGT 57.122 38.095 0.00 0.00 0.00 5.68
599 2245 2.861462 TTTGTTTTTGAGAGGCCGTG 57.139 45.000 0.00 0.00 0.00 4.94
600 2246 1.757682 TTGTTTTTGAGAGGCCGTGT 58.242 45.000 0.00 0.00 0.00 4.49
601 2247 1.305201 TGTTTTTGAGAGGCCGTGTC 58.695 50.000 0.00 0.00 0.00 3.67
602 2248 1.134220 TGTTTTTGAGAGGCCGTGTCT 60.134 47.619 0.00 0.00 0.00 3.41
603 2249 1.531578 GTTTTTGAGAGGCCGTGTCTC 59.468 52.381 12.50 12.50 40.87 3.36
607 2253 2.034376 AGAGGCCGTGTCTCTCGT 59.966 61.111 0.00 0.00 41.05 4.18
608 2254 2.179517 GAGGCCGTGTCTCTCGTG 59.820 66.667 0.00 0.00 30.76 4.35
609 2255 2.282251 AGGCCGTGTCTCTCGTGA 60.282 61.111 0.00 0.00 0.00 4.35
610 2256 1.863662 GAGGCCGTGTCTCTCGTGAA 61.864 60.000 0.00 0.00 30.76 3.18
611 2257 1.006571 GGCCGTGTCTCTCGTGAAA 60.007 57.895 0.00 0.00 0.00 2.69
612 2258 1.009389 GGCCGTGTCTCTCGTGAAAG 61.009 60.000 0.00 0.00 0.00 2.62
613 2259 1.618640 GCCGTGTCTCTCGTGAAAGC 61.619 60.000 0.00 0.00 0.00 3.51
614 2260 0.318699 CCGTGTCTCTCGTGAAAGCA 60.319 55.000 0.00 0.00 0.00 3.91
615 2261 1.487482 CGTGTCTCTCGTGAAAGCAA 58.513 50.000 0.00 0.00 0.00 3.91
616 2262 1.858458 CGTGTCTCTCGTGAAAGCAAA 59.142 47.619 0.00 0.00 0.00 3.68
617 2263 2.097202 CGTGTCTCTCGTGAAAGCAAAG 60.097 50.000 0.00 0.00 0.00 2.77
618 2264 1.867233 TGTCTCTCGTGAAAGCAAAGC 59.133 47.619 0.00 0.00 0.00 3.51
619 2265 1.195674 GTCTCTCGTGAAAGCAAAGCC 59.804 52.381 0.00 0.00 0.00 4.35
620 2266 0.164647 CTCTCGTGAAAGCAAAGCCG 59.835 55.000 0.00 0.00 0.00 5.52
621 2267 0.531974 TCTCGTGAAAGCAAAGCCGT 60.532 50.000 0.00 0.00 0.00 5.68
622 2268 0.384725 CTCGTGAAAGCAAAGCCGTG 60.385 55.000 0.00 0.00 0.00 4.94
623 2269 2.010817 CGTGAAAGCAAAGCCGTGC 61.011 57.895 0.94 0.94 45.28 5.34
624 2270 1.661509 GTGAAAGCAAAGCCGTGCC 60.662 57.895 5.63 0.00 46.14 5.01
625 2271 1.827789 TGAAAGCAAAGCCGTGCCT 60.828 52.632 5.63 0.00 46.14 4.75
626 2272 1.081175 GAAAGCAAAGCCGTGCCTC 60.081 57.895 5.63 0.32 46.14 4.70
627 2273 1.795170 GAAAGCAAAGCCGTGCCTCA 61.795 55.000 5.63 0.00 46.14 3.86
628 2274 1.391157 AAAGCAAAGCCGTGCCTCAA 61.391 50.000 5.63 0.00 46.14 3.02
629 2275 1.799258 AAGCAAAGCCGTGCCTCAAG 61.799 55.000 5.63 0.00 46.14 3.02
630 2276 2.256461 CAAAGCCGTGCCTCAAGC 59.744 61.111 0.00 0.00 44.14 4.01
631 2277 2.985847 AAAGCCGTGCCTCAAGCC 60.986 61.111 0.00 0.00 42.71 4.35
635 2281 3.121030 CCGTGCCTCAAGCCGAAG 61.121 66.667 0.00 0.00 42.71 3.79
658 2304 4.996434 CCGCCATCATCGCCCCTC 62.996 72.222 0.00 0.00 0.00 4.30
659 2305 4.996434 CGCCATCATCGCCCCTCC 62.996 72.222 0.00 0.00 0.00 4.30
660 2306 4.650377 GCCATCATCGCCCCTCCC 62.650 72.222 0.00 0.00 0.00 4.30
661 2307 2.851102 CCATCATCGCCCCTCCCT 60.851 66.667 0.00 0.00 0.00 4.20
662 2308 2.746359 CATCATCGCCCCTCCCTC 59.254 66.667 0.00 0.00 0.00 4.30
663 2309 2.527875 ATCATCGCCCCTCCCTCC 60.528 66.667 0.00 0.00 0.00 4.30
664 2310 4.880426 TCATCGCCCCTCCCTCCC 62.880 72.222 0.00 0.00 0.00 4.30
665 2311 4.888325 CATCGCCCCTCCCTCCCT 62.888 72.222 0.00 0.00 0.00 4.20
666 2312 4.888325 ATCGCCCCTCCCTCCCTG 62.888 72.222 0.00 0.00 0.00 4.45
681 2327 4.828409 CTGGAGCAGGGCAAGAAA 57.172 55.556 0.00 0.00 0.00 2.52
682 2328 2.261215 CTGGAGCAGGGCAAGAAAC 58.739 57.895 0.00 0.00 0.00 2.78
683 2329 1.228552 TGGAGCAGGGCAAGAAACC 60.229 57.895 0.00 0.00 0.00 3.27
684 2330 1.228552 GGAGCAGGGCAAGAAACCA 60.229 57.895 0.00 0.00 0.00 3.67
685 2331 0.613012 GGAGCAGGGCAAGAAACCAT 60.613 55.000 0.00 0.00 0.00 3.55
686 2332 1.260544 GAGCAGGGCAAGAAACCATT 58.739 50.000 0.00 0.00 0.00 3.16
687 2333 2.446435 GAGCAGGGCAAGAAACCATTA 58.554 47.619 0.00 0.00 0.00 1.90
688 2334 3.026694 GAGCAGGGCAAGAAACCATTAT 58.973 45.455 0.00 0.00 0.00 1.28
689 2335 3.026694 AGCAGGGCAAGAAACCATTATC 58.973 45.455 0.00 0.00 0.00 1.75
690 2336 2.760092 GCAGGGCAAGAAACCATTATCA 59.240 45.455 0.00 0.00 0.00 2.15
691 2337 3.385755 GCAGGGCAAGAAACCATTATCAT 59.614 43.478 0.00 0.00 0.00 2.45
692 2338 4.500375 GCAGGGCAAGAAACCATTATCATC 60.500 45.833 0.00 0.00 0.00 2.92
693 2339 3.885297 AGGGCAAGAAACCATTATCATCG 59.115 43.478 0.00 0.00 0.00 3.84
694 2340 3.882888 GGGCAAGAAACCATTATCATCGA 59.117 43.478 0.00 0.00 0.00 3.59
695 2341 4.520492 GGGCAAGAAACCATTATCATCGAT 59.480 41.667 0.00 0.00 0.00 3.59
696 2342 5.705441 GGGCAAGAAACCATTATCATCGATA 59.295 40.000 0.00 0.00 0.00 2.92
697 2343 6.128172 GGGCAAGAAACCATTATCATCGATAG 60.128 42.308 0.00 0.00 0.00 2.08
698 2344 6.128172 GGCAAGAAACCATTATCATCGATAGG 60.128 42.308 0.00 0.00 0.00 2.57
699 2345 6.428159 GCAAGAAACCATTATCATCGATAGGT 59.572 38.462 0.00 0.00 28.45 3.08
703 2349 5.407407 ACCATTATCATCGATAGGTGGTC 57.593 43.478 0.00 0.00 33.01 4.02
704 2350 5.087323 ACCATTATCATCGATAGGTGGTCT 58.913 41.667 0.00 0.00 33.01 3.85
705 2351 6.253758 ACCATTATCATCGATAGGTGGTCTA 58.746 40.000 0.00 0.00 33.01 2.59
706 2352 6.153000 ACCATTATCATCGATAGGTGGTCTAC 59.847 42.308 0.00 0.00 33.01 2.59
707 2353 5.874895 TTATCATCGATAGGTGGTCTACG 57.125 43.478 0.00 0.00 33.01 3.51
708 2354 2.991434 CATCGATAGGTGGTCTACGG 57.009 55.000 0.00 0.00 45.65 4.02
709 2355 2.501261 CATCGATAGGTGGTCTACGGA 58.499 52.381 0.00 0.00 45.65 4.69
710 2356 2.945080 TCGATAGGTGGTCTACGGAT 57.055 50.000 0.00 0.00 0.00 4.18
711 2357 2.775890 TCGATAGGTGGTCTACGGATC 58.224 52.381 0.00 0.00 0.00 3.36
712 2358 2.371179 TCGATAGGTGGTCTACGGATCT 59.629 50.000 0.00 0.00 0.00 2.75
713 2359 3.580022 TCGATAGGTGGTCTACGGATCTA 59.420 47.826 0.00 0.00 0.00 1.98
714 2360 3.933955 CGATAGGTGGTCTACGGATCTAG 59.066 52.174 0.00 0.00 0.00 2.43
715 2361 4.322574 CGATAGGTGGTCTACGGATCTAGA 60.323 50.000 0.00 0.00 0.00 2.43
716 2362 5.627272 CGATAGGTGGTCTACGGATCTAGAT 60.627 48.000 4.47 4.47 0.00 1.98
717 2363 3.757270 AGGTGGTCTACGGATCTAGATG 58.243 50.000 10.74 0.00 0.00 2.90
718 2364 3.138653 AGGTGGTCTACGGATCTAGATGT 59.861 47.826 10.74 5.44 0.00 3.06
719 2365 4.350225 AGGTGGTCTACGGATCTAGATGTA 59.650 45.833 10.74 6.37 0.00 2.29
720 2366 5.068636 GGTGGTCTACGGATCTAGATGTAA 58.931 45.833 10.74 0.00 0.00 2.41
721 2367 5.711036 GGTGGTCTACGGATCTAGATGTAAT 59.289 44.000 10.74 0.00 0.00 1.89
722 2368 6.208994 GGTGGTCTACGGATCTAGATGTAATT 59.791 42.308 10.74 0.00 0.00 1.40
723 2369 7.255871 GGTGGTCTACGGATCTAGATGTAATTT 60.256 40.741 10.74 0.00 0.00 1.82
724 2370 8.142551 GTGGTCTACGGATCTAGATGTAATTTT 58.857 37.037 10.74 0.00 0.00 1.82
725 2371 8.701895 TGGTCTACGGATCTAGATGTAATTTTT 58.298 33.333 10.74 0.00 0.00 1.94
767 2413 9.860898 TCATGATTAATGGTCAATAGTAGATCG 57.139 33.333 0.00 0.00 36.86 3.69
768 2414 9.091784 CATGATTAATGGTCAATAGTAGATCGG 57.908 37.037 0.00 0.00 32.10 4.18
769 2415 8.417273 TGATTAATGGTCAATAGTAGATCGGA 57.583 34.615 0.00 0.00 0.00 4.55
770 2416 8.866093 TGATTAATGGTCAATAGTAGATCGGAA 58.134 33.333 0.00 0.00 0.00 4.30
771 2417 9.360093 GATTAATGGTCAATAGTAGATCGGAAG 57.640 37.037 0.00 0.00 0.00 3.46
772 2418 6.732896 AATGGTCAATAGTAGATCGGAAGT 57.267 37.500 0.00 0.00 0.00 3.01
773 2419 6.732896 ATGGTCAATAGTAGATCGGAAGTT 57.267 37.500 0.00 0.00 0.00 2.66
774 2420 6.540438 TGGTCAATAGTAGATCGGAAGTTT 57.460 37.500 0.00 0.00 0.00 2.66
775 2421 6.942976 TGGTCAATAGTAGATCGGAAGTTTT 58.057 36.000 0.00 0.00 0.00 2.43
776 2422 7.039882 TGGTCAATAGTAGATCGGAAGTTTTC 58.960 38.462 0.00 0.00 0.00 2.29
777 2423 7.093465 TGGTCAATAGTAGATCGGAAGTTTTCT 60.093 37.037 0.00 0.00 0.00 2.52
778 2424 7.764901 GGTCAATAGTAGATCGGAAGTTTTCTT 59.235 37.037 0.00 0.00 43.55 2.52
779 2425 9.798994 GTCAATAGTAGATCGGAAGTTTTCTTA 57.201 33.333 0.00 0.00 40.61 2.10
803 2449 2.323999 AAAGTTTGGCATGGATCCCA 57.676 45.000 9.90 0.00 38.19 4.37
804 2450 1.856629 AAGTTTGGCATGGATCCCAG 58.143 50.000 9.90 2.37 36.75 4.45
805 2451 0.706433 AGTTTGGCATGGATCCCAGT 59.294 50.000 9.90 0.00 36.75 4.00
806 2452 0.819582 GTTTGGCATGGATCCCAGTG 59.180 55.000 9.90 6.90 36.75 3.66
807 2453 0.703488 TTTGGCATGGATCCCAGTGA 59.297 50.000 9.90 0.00 36.75 3.41
819 2465 2.667470 TCCCAGTGAGTGTAGCTATCC 58.333 52.381 0.00 0.00 0.00 2.59
830 2476 0.387929 TAGCTATCCCGAGCCAAACG 59.612 55.000 0.00 0.00 43.97 3.60
865 2511 3.464907 CACTGCTCCATCCAATGTCTAG 58.535 50.000 0.00 0.00 0.00 2.43
955 2601 2.807045 CGCTCGCTCTCACCACAC 60.807 66.667 0.00 0.00 0.00 3.82
1767 3416 6.404734 CCACTTTCAATACCCTCATTGCTTAC 60.405 42.308 0.00 0.00 36.13 2.34
1768 3417 5.652452 ACTTTCAATACCCTCATTGCTTACC 59.348 40.000 0.00 0.00 36.13 2.85
1821 3470 2.464459 GGCCCTTTCGCAGATGTCG 61.464 63.158 0.00 0.00 35.04 4.35
2076 3725 6.327154 TGACGTGACATTCAATATACTCGTT 58.673 36.000 0.00 0.00 0.00 3.85
2140 3789 2.105006 TCTTGAGCAGATGTTGGAGC 57.895 50.000 0.00 0.00 0.00 4.70
2304 3953 0.662619 TGAAAGGTTTGTGCAGAGCG 59.337 50.000 0.00 0.00 0.00 5.03
2382 4031 6.316390 GTCTTCCGAATCCTGTTACATTCAAT 59.684 38.462 0.00 0.00 0.00 2.57
2385 4034 6.645306 TCCGAATCCTGTTACATTCAATACA 58.355 36.000 0.00 0.00 0.00 2.29
2415 4064 6.042552 TCAATTTCCTGTGCAAAAAGGGATTA 59.957 34.615 10.58 0.00 34.08 1.75
2433 4082 2.408271 TAGTGGAGCAGGCAATTGAG 57.592 50.000 10.34 0.00 0.00 3.02
2493 4142 3.956199 ACCTTATTAGCTACAGCACGGTA 59.044 43.478 3.70 0.00 45.16 4.02
2535 4184 2.093658 TGGTAAGACGGAGGAAGCATTC 60.094 50.000 0.00 0.00 46.67 2.67
2604 4253 8.795513 ACGATAATTTATTCATCAATGGCATCA 58.204 29.630 0.00 0.00 0.00 3.07
2919 4568 7.001674 ACTTGGTGAGACATTTTGGTATTGTA 58.998 34.615 0.00 0.00 0.00 2.41
2925 4574 8.511321 GTGAGACATTTTGGTATTGTATGAACA 58.489 33.333 0.00 0.00 0.00 3.18
2969 4618 4.745172 GCTGGTGGAAGGAGGAGATTATTC 60.745 50.000 0.00 0.00 0.00 1.75
2987 4636 2.283101 TGGTGGCATTGGCAGGAC 60.283 61.111 13.88 7.74 43.71 3.85
3263 4914 3.479370 CAGCGACTGCCTTAGTGC 58.521 61.111 0.00 0.00 44.31 4.40
3273 4924 3.253432 ACTGCCTTAGTGCTTTTAGTTGC 59.747 43.478 0.00 0.00 38.49 4.17
3279 4930 6.921307 GCCTTAGTGCTTTTAGTTGCTTTAAA 59.079 34.615 0.00 0.00 0.00 1.52
3280 4931 7.096189 GCCTTAGTGCTTTTAGTTGCTTTAAAC 60.096 37.037 0.00 0.00 0.00 2.01
3282 4933 9.463443 CTTAGTGCTTTTAGTTGCTTTAAACAT 57.537 29.630 0.00 0.00 32.21 2.71
3283 4934 9.810545 TTAGTGCTTTTAGTTGCTTTAAACATT 57.189 25.926 0.00 0.00 32.21 2.71
3285 4936 9.244799 AGTGCTTTTAGTTGCTTTAAACATTAC 57.755 29.630 0.00 0.00 32.21 1.89
3286 4937 9.026074 GTGCTTTTAGTTGCTTTAAACATTACA 57.974 29.630 0.00 0.00 32.21 2.41
3287 4938 9.243637 TGCTTTTAGTTGCTTTAAACATTACAG 57.756 29.630 0.00 0.00 32.21 2.74
3288 4939 9.458374 GCTTTTAGTTGCTTTAAACATTACAGA 57.542 29.630 0.00 0.00 32.21 3.41
3330 5039 6.783892 TCCTTCATTTAACAAAAATGCTGC 57.216 33.333 5.74 0.00 37.50 5.25
3350 5060 5.228012 GCTGCGAGAAAACATAACTAAATGC 59.772 40.000 0.00 0.00 0.00 3.56
3351 5061 5.320723 TGCGAGAAAACATAACTAAATGCG 58.679 37.500 0.00 0.00 0.00 4.73
3484 5280 2.055684 TGCCTTAGCATTGCATAGCA 57.944 45.000 11.91 11.00 46.52 3.49
3534 5334 6.592607 TGTAATTTCTACCGGCTAAACTTCTG 59.407 38.462 0.00 0.00 0.00 3.02
3643 5443 4.860022 ACATAAACCCTTCTTCATGGGAG 58.140 43.478 4.93 0.00 46.15 4.30
3657 5457 3.763360 TCATGGGAGCCAGTTGTAATTTG 59.237 43.478 0.00 0.00 36.75 2.32
3661 5461 4.202524 TGGGAGCCAGTTGTAATTTGTACT 60.203 41.667 0.00 0.00 0.00 2.73
3794 5595 7.277539 CACAAAAGGTTTTACTTTGCAATCTCA 59.722 33.333 0.00 0.00 40.36 3.27
3832 5633 6.919721 TCCACCTTAAATCATAAAACTGCAC 58.080 36.000 0.00 0.00 0.00 4.57
3846 5647 1.873591 ACTGCACGAACTAAAAGCCAG 59.126 47.619 0.00 0.00 0.00 4.85
3873 5674 7.115663 ACAAACAATTCAATTTACCGCATGTAC 59.884 33.333 0.00 0.00 0.00 2.90
3874 5675 6.260870 ACAATTCAATTTACCGCATGTACA 57.739 33.333 0.00 0.00 0.00 2.90
3879 5680 5.874831 TCAATTTACCGCATGTACAATGAC 58.125 37.500 0.00 0.00 0.00 3.06
3891 5692 2.401583 ACAATGACGCCATCTTAGCA 57.598 45.000 0.00 0.00 31.40 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.203294 AAACGGGCGCATATCCCC 60.203 61.111 10.83 0.00 40.75 4.81
25 26 3.030652 CAAACGGGCGCATATCCC 58.969 61.111 10.83 0.00 40.43 3.85
26 27 2.331451 GCAAACGGGCGCATATCC 59.669 61.111 10.83 0.00 0.00 2.59
44 45 4.445545 CCCGTTTCTTCGCTGCGC 62.446 66.667 18.65 0.00 0.00 6.09
45 46 4.445545 GCCCGTTTCTTCGCTGCG 62.446 66.667 17.25 17.25 0.00 5.18
46 47 4.445545 CGCCCGTTTCTTCGCTGC 62.446 66.667 0.00 0.00 0.00 5.25
47 48 4.445545 GCGCCCGTTTCTTCGCTG 62.446 66.667 0.00 0.00 43.70 5.18
59 60 1.431845 CAAATCCTAAACGGCGCCC 59.568 57.895 23.46 2.84 0.00 6.13
60 61 1.226575 GCAAATCCTAAACGGCGCC 60.227 57.895 19.07 19.07 0.00 6.53
61 62 1.226575 GGCAAATCCTAAACGGCGC 60.227 57.895 6.90 0.00 0.00 6.53
62 63 1.061887 CGGCAAATCCTAAACGGCG 59.938 57.895 4.80 4.80 39.29 6.46
63 64 1.310216 ACCGGCAAATCCTAAACGGC 61.310 55.000 0.00 0.00 44.73 5.68
64 65 0.730840 GACCGGCAAATCCTAAACGG 59.269 55.000 0.00 0.00 46.16 4.44
65 66 0.372334 CGACCGGCAAATCCTAAACG 59.628 55.000 0.00 0.00 0.00 3.60
66 67 0.098200 GCGACCGGCAAATCCTAAAC 59.902 55.000 0.00 0.00 42.87 2.01
67 68 1.027792 GGCGACCGGCAAATCCTAAA 61.028 55.000 0.00 0.00 46.16 1.85
68 69 1.450669 GGCGACCGGCAAATCCTAA 60.451 57.895 0.00 0.00 46.16 2.69
69 70 2.188469 GGCGACCGGCAAATCCTA 59.812 61.111 0.00 0.00 46.16 2.94
77 78 1.887707 CTCCTATTTGGCGACCGGC 60.888 63.158 0.00 9.09 42.51 6.13
78 79 1.887707 GCTCCTATTTGGCGACCGG 60.888 63.158 0.00 0.00 35.26 5.28
79 80 0.462047 AAGCTCCTATTTGGCGACCG 60.462 55.000 0.00 0.00 35.26 4.79
112 113 2.801077 ATAAAAGGGAACACGGGGAG 57.199 50.000 0.00 0.00 0.00 4.30
117 118 7.749126 GTGAAACATCTTATAAAAGGGAACACG 59.251 37.037 0.00 0.00 36.32 4.49
118 119 8.573035 TGTGAAACATCTTATAAAAGGGAACAC 58.427 33.333 0.00 0.00 45.67 3.32
177 178 4.035909 AGTGATTTCGCGTTTTAACCAGTT 59.964 37.500 5.77 0.00 0.00 3.16
183 184 6.308524 TCTCGATTAGTGATTTCGCGTTTTAA 59.691 34.615 5.77 0.00 33.08 1.52
192 193 7.708998 AGGAGTACTTCTCGATTAGTGATTTC 58.291 38.462 0.00 3.20 43.60 2.17
193 194 7.648039 AGGAGTACTTCTCGATTAGTGATTT 57.352 36.000 0.00 0.00 43.60 2.17
194 195 7.648039 AAGGAGTACTTCTCGATTAGTGATT 57.352 36.000 3.51 0.00 43.60 2.57
202 203 7.502895 TGCTCTTTATAAGGAGTACTTCTCGAT 59.497 37.037 21.66 4.06 43.60 3.59
203 204 6.827251 TGCTCTTTATAAGGAGTACTTCTCGA 59.173 38.462 21.66 0.00 43.60 4.04
204 205 6.913673 GTGCTCTTTATAAGGAGTACTTCTCG 59.086 42.308 27.42 4.96 43.60 4.04
223 224 2.355193 GCGGAGGGAAGAGTGCTCT 61.355 63.158 0.00 0.00 42.75 4.09
224 225 2.185608 GCGGAGGGAAGAGTGCTC 59.814 66.667 0.00 0.00 0.00 4.26
225 226 2.604686 TGCGGAGGGAAGAGTGCT 60.605 61.111 0.00 0.00 0.00 4.40
226 227 2.125350 CTGCGGAGGGAAGAGTGC 60.125 66.667 0.00 0.00 0.00 4.40
227 228 1.831652 AACCTGCGGAGGGAAGAGTG 61.832 60.000 27.88 0.00 44.84 3.51
229 230 1.078848 CAACCTGCGGAGGGAAGAG 60.079 63.158 27.88 7.89 44.84 2.85
230 231 1.841556 ACAACCTGCGGAGGGAAGA 60.842 57.895 27.88 0.00 44.84 2.87
232 233 2.144078 TCACAACCTGCGGAGGGAA 61.144 57.895 27.88 4.44 44.84 3.97
233 234 2.525629 TCACAACCTGCGGAGGGA 60.526 61.111 27.88 11.76 44.84 4.20
234 235 2.358737 GTCACAACCTGCGGAGGG 60.359 66.667 27.88 12.82 44.84 4.30
236 237 0.532862 ACTTGTCACAACCTGCGGAG 60.533 55.000 0.00 0.00 0.00 4.63
237 238 0.813610 CACTTGTCACAACCTGCGGA 60.814 55.000 0.00 0.00 0.00 5.54
238 239 1.648720 CACTTGTCACAACCTGCGG 59.351 57.895 0.00 0.00 0.00 5.69
239 240 1.648720 CCACTTGTCACAACCTGCG 59.351 57.895 0.00 0.00 0.00 5.18
241 242 0.381801 GTGCCACTTGTCACAACCTG 59.618 55.000 0.00 0.00 33.63 4.00
242 243 1.095228 CGTGCCACTTGTCACAACCT 61.095 55.000 0.00 0.00 33.03 3.50
244 245 1.298339 GCGTGCCACTTGTCACAAC 60.298 57.895 0.00 0.00 33.03 3.32
245 246 1.451207 AGCGTGCCACTTGTCACAA 60.451 52.632 0.00 0.00 33.03 3.33
246 247 2.179547 CAGCGTGCCACTTGTCACA 61.180 57.895 0.00 0.00 33.03 3.58
247 248 2.633657 CAGCGTGCCACTTGTCAC 59.366 61.111 0.00 0.00 0.00 3.67
250 251 1.968017 CATCCAGCGTGCCACTTGT 60.968 57.895 0.00 0.00 0.00 3.16
251 252 1.968017 ACATCCAGCGTGCCACTTG 60.968 57.895 0.00 0.00 0.00 3.16
261 262 3.058160 AAGTGCCGCACATCCAGC 61.058 61.111 24.97 0.00 36.74 4.85
262 263 1.915614 GACAAGTGCCGCACATCCAG 61.916 60.000 24.97 11.69 36.74 3.86
263 264 1.965930 GACAAGTGCCGCACATCCA 60.966 57.895 24.97 0.00 36.74 3.41
264 265 2.870372 GACAAGTGCCGCACATCC 59.130 61.111 24.97 7.72 36.74 3.51
271 272 2.972505 AGGTTGCGACAAGTGCCG 60.973 61.111 6.39 0.00 0.00 5.69
272 273 2.186826 ACAGGTTGCGACAAGTGCC 61.187 57.895 6.39 0.00 0.00 5.01
273 274 1.009675 CACAGGTTGCGACAAGTGC 60.010 57.895 13.23 0.00 0.00 4.40
274 275 0.583438 CTCACAGGTTGCGACAAGTG 59.417 55.000 17.54 17.54 35.00 3.16
276 277 1.299541 AACTCACAGGTTGCGACAAG 58.700 50.000 6.39 0.00 0.00 3.16
315 441 7.399523 GCACGAAGAGATAATACGTTTTGAAT 58.600 34.615 0.00 0.00 35.05 2.57
318 444 5.181084 CGCACGAAGAGATAATACGTTTTG 58.819 41.667 0.00 0.00 35.05 2.44
323 449 2.971915 GGACGCACGAAGAGATAATACG 59.028 50.000 0.00 0.00 0.00 3.06
324 450 3.961182 TGGACGCACGAAGAGATAATAC 58.039 45.455 0.00 0.00 0.00 1.89
331 457 1.656095 GAGATTTGGACGCACGAAGAG 59.344 52.381 0.00 0.00 0.00 2.85
332 458 1.000394 TGAGATTTGGACGCACGAAGA 60.000 47.619 0.00 0.00 0.00 2.87
333 459 1.428448 TGAGATTTGGACGCACGAAG 58.572 50.000 0.00 0.00 0.00 3.79
334 460 1.872388 TTGAGATTTGGACGCACGAA 58.128 45.000 0.00 0.00 0.00 3.85
335 461 1.872388 TTTGAGATTTGGACGCACGA 58.128 45.000 0.00 0.00 0.00 4.35
336 462 2.774007 GATTTGAGATTTGGACGCACG 58.226 47.619 0.00 0.00 0.00 5.34
337 463 2.159627 ACGATTTGAGATTTGGACGCAC 59.840 45.455 0.00 0.00 0.00 5.34
338 464 2.422597 ACGATTTGAGATTTGGACGCA 58.577 42.857 0.00 0.00 0.00 5.24
339 465 3.471495 AACGATTTGAGATTTGGACGC 57.529 42.857 0.00 0.00 0.00 5.19
340 466 5.339611 GTGAAAACGATTTGAGATTTGGACG 59.660 40.000 0.00 0.00 0.00 4.79
341 467 6.360681 CAGTGAAAACGATTTGAGATTTGGAC 59.639 38.462 0.00 0.00 0.00 4.02
342 468 6.039270 ACAGTGAAAACGATTTGAGATTTGGA 59.961 34.615 0.00 0.00 0.00 3.53
344 470 7.306167 CCAACAGTGAAAACGATTTGAGATTTG 60.306 37.037 0.00 0.00 0.00 2.32
349 1995 5.168526 TCCAACAGTGAAAACGATTTGAG 57.831 39.130 0.00 0.00 0.00 3.02
356 2002 4.207019 GCAAAGAATCCAACAGTGAAAACG 59.793 41.667 0.00 0.00 0.00 3.60
362 2008 2.662791 CGACGCAAAGAATCCAACAGTG 60.663 50.000 0.00 0.00 0.00 3.66
363 2009 1.531149 CGACGCAAAGAATCCAACAGT 59.469 47.619 0.00 0.00 0.00 3.55
364 2010 1.798223 TCGACGCAAAGAATCCAACAG 59.202 47.619 0.00 0.00 0.00 3.16
365 2011 1.798223 CTCGACGCAAAGAATCCAACA 59.202 47.619 0.00 0.00 0.00 3.33
366 2012 2.066262 TCTCGACGCAAAGAATCCAAC 58.934 47.619 0.00 0.00 0.00 3.77
368 2014 2.166459 AGATCTCGACGCAAAGAATCCA 59.834 45.455 0.00 0.00 0.00 3.41
370 2016 3.859961 TGAAGATCTCGACGCAAAGAATC 59.140 43.478 0.00 0.00 0.00 2.52
372 2018 3.297830 TGAAGATCTCGACGCAAAGAA 57.702 42.857 0.00 0.00 0.00 2.52
375 2021 3.807622 AGTTTTGAAGATCTCGACGCAAA 59.192 39.130 0.00 0.05 0.00 3.68
376 2022 3.390135 AGTTTTGAAGATCTCGACGCAA 58.610 40.909 0.00 0.00 0.00 4.85
379 2025 4.734917 ACCTAGTTTTGAAGATCTCGACG 58.265 43.478 0.00 0.00 0.00 5.12
380 2026 5.956642 AGACCTAGTTTTGAAGATCTCGAC 58.043 41.667 0.00 0.00 0.00 4.20
382 2028 5.955488 TGAGACCTAGTTTTGAAGATCTCG 58.045 41.667 0.00 0.00 35.22 4.04
384 2030 7.251321 ACATGAGACCTAGTTTTGAAGATCT 57.749 36.000 0.00 0.00 0.00 2.75
385 2031 7.389053 ACAACATGAGACCTAGTTTTGAAGATC 59.611 37.037 0.00 0.00 0.00 2.75
386 2032 7.227156 ACAACATGAGACCTAGTTTTGAAGAT 58.773 34.615 0.00 0.00 0.00 2.40
388 2034 6.867662 ACAACATGAGACCTAGTTTTGAAG 57.132 37.500 0.00 0.00 0.00 3.02
391 2037 6.710744 ACCTAACAACATGAGACCTAGTTTTG 59.289 38.462 0.00 0.00 0.00 2.44
395 2041 7.399191 TCAATACCTAACAACATGAGACCTAGT 59.601 37.037 0.00 0.00 0.00 2.57
396 2042 7.707035 GTCAATACCTAACAACATGAGACCTAG 59.293 40.741 0.00 0.00 0.00 3.02
397 2043 7.179516 TGTCAATACCTAACAACATGAGACCTA 59.820 37.037 0.00 0.00 0.00 3.08
399 2045 6.170506 TGTCAATACCTAACAACATGAGACC 58.829 40.000 0.00 0.00 0.00 3.85
401 2047 7.936847 AGTTTGTCAATACCTAACAACATGAGA 59.063 33.333 0.00 0.00 32.94 3.27
455 2101 6.315144 CCAATTCTTCTTTTTGTCCGGTTTTT 59.685 34.615 0.00 0.00 0.00 1.94
456 2102 5.815222 CCAATTCTTCTTTTTGTCCGGTTTT 59.185 36.000 0.00 0.00 0.00 2.43
457 2103 5.356426 CCAATTCTTCTTTTTGTCCGGTTT 58.644 37.500 0.00 0.00 0.00 3.27
458 2104 4.202212 CCCAATTCTTCTTTTTGTCCGGTT 60.202 41.667 0.00 0.00 0.00 4.44
459 2105 3.320826 CCCAATTCTTCTTTTTGTCCGGT 59.679 43.478 0.00 0.00 0.00 5.28
460 2106 3.572255 TCCCAATTCTTCTTTTTGTCCGG 59.428 43.478 0.00 0.00 0.00 5.14
461 2107 4.278419 ACTCCCAATTCTTCTTTTTGTCCG 59.722 41.667 0.00 0.00 0.00 4.79
462 2108 5.532557 CACTCCCAATTCTTCTTTTTGTCC 58.467 41.667 0.00 0.00 0.00 4.02
463 2109 4.984785 GCACTCCCAATTCTTCTTTTTGTC 59.015 41.667 0.00 0.00 0.00 3.18
464 2110 4.499696 CGCACTCCCAATTCTTCTTTTTGT 60.500 41.667 0.00 0.00 0.00 2.83
465 2111 3.983344 CGCACTCCCAATTCTTCTTTTTG 59.017 43.478 0.00 0.00 0.00 2.44
466 2112 3.636764 ACGCACTCCCAATTCTTCTTTTT 59.363 39.130 0.00 0.00 0.00 1.94
467 2113 3.222603 ACGCACTCCCAATTCTTCTTTT 58.777 40.909 0.00 0.00 0.00 2.27
468 2114 2.863809 ACGCACTCCCAATTCTTCTTT 58.136 42.857 0.00 0.00 0.00 2.52
469 2115 2.568623 ACGCACTCCCAATTCTTCTT 57.431 45.000 0.00 0.00 0.00 2.52
470 2116 2.039084 AGAACGCACTCCCAATTCTTCT 59.961 45.455 0.00 0.00 0.00 2.85
471 2117 2.427506 AGAACGCACTCCCAATTCTTC 58.572 47.619 0.00 0.00 0.00 2.87
472 2118 2.568623 AGAACGCACTCCCAATTCTT 57.431 45.000 0.00 0.00 0.00 2.52
473 2119 2.568623 AAGAACGCACTCCCAATTCT 57.431 45.000 0.00 0.00 0.00 2.40
474 2120 3.643159 AAAAGAACGCACTCCCAATTC 57.357 42.857 0.00 0.00 0.00 2.17
475 2121 3.243737 GGAAAAAGAACGCACTCCCAATT 60.244 43.478 0.00 0.00 0.00 2.32
476 2122 2.296190 GGAAAAAGAACGCACTCCCAAT 59.704 45.455 0.00 0.00 0.00 3.16
477 2123 1.679153 GGAAAAAGAACGCACTCCCAA 59.321 47.619 0.00 0.00 0.00 4.12
478 2124 1.133915 AGGAAAAAGAACGCACTCCCA 60.134 47.619 0.00 0.00 0.00 4.37
479 2125 1.605753 AGGAAAAAGAACGCACTCCC 58.394 50.000 0.00 0.00 0.00 4.30
480 2126 3.710326 AAAGGAAAAAGAACGCACTCC 57.290 42.857 0.00 0.00 0.00 3.85
481 2127 3.724257 CGAAAAGGAAAAAGAACGCACTC 59.276 43.478 0.00 0.00 0.00 3.51
482 2128 3.488553 CCGAAAAGGAAAAAGAACGCACT 60.489 43.478 0.00 0.00 45.00 4.40
483 2129 2.787129 CCGAAAAGGAAAAAGAACGCAC 59.213 45.455 0.00 0.00 45.00 5.34
484 2130 3.073144 CCGAAAAGGAAAAAGAACGCA 57.927 42.857 0.00 0.00 45.00 5.24
508 2154 1.660264 GAAGCACGGCCAAAAACGG 60.660 57.895 2.24 0.00 0.00 4.44
509 2155 0.660300 GAGAAGCACGGCCAAAAACG 60.660 55.000 2.24 0.00 0.00 3.60
510 2156 0.660300 CGAGAAGCACGGCCAAAAAC 60.660 55.000 2.24 0.00 0.00 2.43
511 2157 1.098712 ACGAGAAGCACGGCCAAAAA 61.099 50.000 2.24 0.00 34.93 1.94
512 2158 1.525077 ACGAGAAGCACGGCCAAAA 60.525 52.632 2.24 0.00 34.93 2.44
513 2159 2.110213 ACGAGAAGCACGGCCAAA 59.890 55.556 2.24 0.00 34.93 3.28
514 2160 2.652382 TTCACGAGAAGCACGGCCAA 62.652 55.000 2.24 0.00 34.93 4.52
515 2161 2.652382 TTTCACGAGAAGCACGGCCA 62.652 55.000 2.24 0.00 34.71 5.36
516 2162 1.901650 CTTTCACGAGAAGCACGGCC 61.902 60.000 0.00 0.00 34.71 6.13
517 2163 1.493311 CTTTCACGAGAAGCACGGC 59.507 57.895 0.00 0.00 34.71 5.68
518 2164 1.221466 TGCTTTCACGAGAAGCACGG 61.221 55.000 16.57 1.05 34.92 4.94
519 2165 0.581529 TTGCTTTCACGAGAAGCACG 59.418 50.000 18.97 0.00 37.51 5.34
520 2166 2.755836 TTTGCTTTCACGAGAAGCAC 57.244 45.000 18.97 4.99 37.51 4.40
521 2167 2.226437 GGATTTGCTTTCACGAGAAGCA 59.774 45.455 16.57 16.57 36.67 3.91
522 2168 2.726066 CGGATTTGCTTTCACGAGAAGC 60.726 50.000 12.77 12.77 34.71 3.86
523 2169 2.480419 ACGGATTTGCTTTCACGAGAAG 59.520 45.455 0.00 0.00 34.71 2.85
524 2170 2.223144 CACGGATTTGCTTTCACGAGAA 59.777 45.455 0.00 0.00 0.00 2.87
525 2171 1.798223 CACGGATTTGCTTTCACGAGA 59.202 47.619 0.00 0.00 0.00 4.04
526 2172 1.725931 GCACGGATTTGCTTTCACGAG 60.726 52.381 0.00 0.00 39.59 4.18
527 2173 0.237235 GCACGGATTTGCTTTCACGA 59.763 50.000 0.00 0.00 39.59 4.35
528 2174 0.729140 GGCACGGATTTGCTTTCACG 60.729 55.000 0.00 0.00 42.56 4.35
529 2175 0.598065 AGGCACGGATTTGCTTTCAC 59.402 50.000 0.00 0.00 42.56 3.18
530 2176 0.881118 GAGGCACGGATTTGCTTTCA 59.119 50.000 0.00 0.00 42.56 2.69
531 2177 1.168714 AGAGGCACGGATTTGCTTTC 58.831 50.000 0.00 0.00 42.56 2.62
532 2178 1.620822 AAGAGGCACGGATTTGCTTT 58.379 45.000 0.00 0.00 42.56 3.51
533 2179 2.489938 TAAGAGGCACGGATTTGCTT 57.510 45.000 0.00 0.00 42.56 3.91
534 2180 2.717639 ATAAGAGGCACGGATTTGCT 57.282 45.000 0.00 0.00 42.56 3.91
535 2181 2.221055 CGTATAAGAGGCACGGATTTGC 59.779 50.000 0.00 0.00 42.18 3.68
578 2224 3.056465 ACACGGCCTCTCAAAAACAAAAA 60.056 39.130 0.00 0.00 0.00 1.94
579 2225 2.494073 ACACGGCCTCTCAAAAACAAAA 59.506 40.909 0.00 0.00 0.00 2.44
580 2226 2.096248 ACACGGCCTCTCAAAAACAAA 58.904 42.857 0.00 0.00 0.00 2.83
581 2227 1.673920 GACACGGCCTCTCAAAAACAA 59.326 47.619 0.00 0.00 0.00 2.83
582 2228 1.134220 AGACACGGCCTCTCAAAAACA 60.134 47.619 0.00 0.00 0.00 2.83
583 2229 1.531578 GAGACACGGCCTCTCAAAAAC 59.468 52.381 14.11 0.00 35.21 2.43
584 2230 1.416401 AGAGACACGGCCTCTCAAAAA 59.584 47.619 19.57 0.00 36.31 1.94
585 2231 1.048601 AGAGACACGGCCTCTCAAAA 58.951 50.000 19.57 0.00 36.31 2.44
586 2232 2.746697 AGAGACACGGCCTCTCAAA 58.253 52.632 19.57 0.00 36.31 2.69
587 2233 4.521559 AGAGACACGGCCTCTCAA 57.478 55.556 19.57 0.00 36.31 3.02
590 2236 2.034376 ACGAGAGACACGGCCTCT 59.966 61.111 0.00 0.00 43.16 3.69
591 2237 1.863662 TTCACGAGAGACACGGCCTC 61.864 60.000 0.00 0.00 34.93 4.70
592 2238 1.461091 TTTCACGAGAGACACGGCCT 61.461 55.000 0.00 0.00 34.93 5.19
593 2239 1.006571 TTTCACGAGAGACACGGCC 60.007 57.895 0.00 0.00 34.93 6.13
594 2240 1.618640 GCTTTCACGAGAGACACGGC 61.619 60.000 0.00 0.00 34.93 5.68
595 2241 0.318699 TGCTTTCACGAGAGACACGG 60.319 55.000 0.00 0.00 34.93 4.94
596 2242 1.487482 TTGCTTTCACGAGAGACACG 58.513 50.000 0.00 0.00 0.00 4.49
597 2243 2.348966 GCTTTGCTTTCACGAGAGACAC 60.349 50.000 0.00 0.00 0.00 3.67
598 2244 1.867233 GCTTTGCTTTCACGAGAGACA 59.133 47.619 0.00 0.00 0.00 3.41
599 2245 1.195674 GGCTTTGCTTTCACGAGAGAC 59.804 52.381 0.00 0.00 0.00 3.36
600 2246 1.512926 GGCTTTGCTTTCACGAGAGA 58.487 50.000 0.00 0.00 0.00 3.10
601 2247 0.164647 CGGCTTTGCTTTCACGAGAG 59.835 55.000 0.00 0.00 0.00 3.20
602 2248 0.531974 ACGGCTTTGCTTTCACGAGA 60.532 50.000 0.00 0.00 0.00 4.04
603 2249 0.384725 CACGGCTTTGCTTTCACGAG 60.385 55.000 0.00 0.00 0.00 4.18
604 2250 1.646540 CACGGCTTTGCTTTCACGA 59.353 52.632 0.00 0.00 0.00 4.35
605 2251 2.010817 GCACGGCTTTGCTTTCACG 61.011 57.895 3.17 0.00 39.59 4.35
606 2252 1.661509 GGCACGGCTTTGCTTTCAC 60.662 57.895 9.49 0.00 42.56 3.18
607 2253 1.795170 GAGGCACGGCTTTGCTTTCA 61.795 55.000 9.49 0.00 42.56 2.69
608 2254 1.081175 GAGGCACGGCTTTGCTTTC 60.081 57.895 9.49 5.20 42.56 2.62
609 2255 1.391157 TTGAGGCACGGCTTTGCTTT 61.391 50.000 9.49 0.15 42.56 3.51
610 2256 1.799258 CTTGAGGCACGGCTTTGCTT 61.799 55.000 9.49 2.59 42.56 3.91
611 2257 2.203337 TTGAGGCACGGCTTTGCT 60.203 55.556 9.49 0.00 42.56 3.91
612 2258 2.256461 CTTGAGGCACGGCTTTGC 59.744 61.111 0.00 1.84 42.18 3.68
613 2259 2.256461 GCTTGAGGCACGGCTTTG 59.744 61.111 0.00 0.00 41.35 2.77
614 2260 2.985847 GGCTTGAGGCACGGCTTT 60.986 61.111 0.00 0.00 44.01 3.51
618 2264 3.121030 CTTCGGCTTGAGGCACGG 61.121 66.667 5.38 0.00 44.01 4.94
619 2265 3.121030 CCTTCGGCTTGAGGCACG 61.121 66.667 5.38 0.00 44.01 5.34
620 2266 3.435186 GCCTTCGGCTTGAGGCAC 61.435 66.667 16.38 0.00 46.69 5.01
641 2287 4.996434 GAGGGGCGATGATGGCGG 62.996 72.222 0.00 0.00 34.76 6.13
642 2288 4.996434 GGAGGGGCGATGATGGCG 62.996 72.222 0.00 0.00 34.76 5.69
643 2289 4.650377 GGGAGGGGCGATGATGGC 62.650 72.222 0.00 0.00 0.00 4.40
644 2290 2.851102 AGGGAGGGGCGATGATGG 60.851 66.667 0.00 0.00 0.00 3.51
645 2291 2.746359 GAGGGAGGGGCGATGATG 59.254 66.667 0.00 0.00 0.00 3.07
646 2292 2.527875 GGAGGGAGGGGCGATGAT 60.528 66.667 0.00 0.00 0.00 2.45
647 2293 4.880426 GGGAGGGAGGGGCGATGA 62.880 72.222 0.00 0.00 0.00 2.92
648 2294 4.888325 AGGGAGGGAGGGGCGATG 62.888 72.222 0.00 0.00 0.00 3.84
649 2295 4.888325 CAGGGAGGGAGGGGCGAT 62.888 72.222 0.00 0.00 0.00 4.58
664 2310 1.246737 GGTTTCTTGCCCTGCTCCAG 61.247 60.000 0.00 0.00 0.00 3.86
665 2311 1.228552 GGTTTCTTGCCCTGCTCCA 60.229 57.895 0.00 0.00 0.00 3.86
666 2312 0.613012 ATGGTTTCTTGCCCTGCTCC 60.613 55.000 0.00 0.00 0.00 4.70
667 2313 1.260544 AATGGTTTCTTGCCCTGCTC 58.739 50.000 0.00 0.00 0.00 4.26
668 2314 2.603075 TAATGGTTTCTTGCCCTGCT 57.397 45.000 0.00 0.00 0.00 4.24
669 2315 2.760092 TGATAATGGTTTCTTGCCCTGC 59.240 45.455 0.00 0.00 0.00 4.85
670 2316 4.261322 CGATGATAATGGTTTCTTGCCCTG 60.261 45.833 0.00 0.00 0.00 4.45
671 2317 3.885297 CGATGATAATGGTTTCTTGCCCT 59.115 43.478 0.00 0.00 0.00 5.19
672 2318 3.882888 TCGATGATAATGGTTTCTTGCCC 59.117 43.478 0.00 0.00 0.00 5.36
673 2319 5.695851 ATCGATGATAATGGTTTCTTGCC 57.304 39.130 0.00 0.00 0.00 4.52
674 2320 6.428159 ACCTATCGATGATAATGGTTTCTTGC 59.572 38.462 8.54 0.00 0.00 4.01
675 2321 7.095060 CCACCTATCGATGATAATGGTTTCTTG 60.095 40.741 8.54 0.00 31.49 3.02
676 2322 6.936900 CCACCTATCGATGATAATGGTTTCTT 59.063 38.462 8.54 0.00 31.49 2.52
677 2323 6.043243 ACCACCTATCGATGATAATGGTTTCT 59.957 38.462 8.54 0.00 39.23 2.52
678 2324 6.231211 ACCACCTATCGATGATAATGGTTTC 58.769 40.000 8.54 0.00 39.23 2.78
679 2325 6.043243 AGACCACCTATCGATGATAATGGTTT 59.957 38.462 8.54 7.18 40.81 3.27
680 2326 5.544176 AGACCACCTATCGATGATAATGGTT 59.456 40.000 8.54 3.86 40.81 3.67
681 2327 5.087323 AGACCACCTATCGATGATAATGGT 58.913 41.667 16.68 16.68 42.14 3.55
682 2328 5.667539 AGACCACCTATCGATGATAATGG 57.332 43.478 8.54 10.76 37.11 3.16
683 2329 6.258899 CGTAGACCACCTATCGATGATAATG 58.741 44.000 8.54 0.00 0.00 1.90
684 2330 5.357314 CCGTAGACCACCTATCGATGATAAT 59.643 44.000 8.54 0.00 0.00 1.28
685 2331 4.698780 CCGTAGACCACCTATCGATGATAA 59.301 45.833 8.54 0.00 0.00 1.75
686 2332 4.019950 TCCGTAGACCACCTATCGATGATA 60.020 45.833 8.54 0.00 0.00 2.15
687 2333 3.082548 CCGTAGACCACCTATCGATGAT 58.917 50.000 8.54 0.00 0.00 2.45
688 2334 2.105306 TCCGTAGACCACCTATCGATGA 59.895 50.000 8.54 0.00 0.00 2.92
689 2335 2.501261 TCCGTAGACCACCTATCGATG 58.499 52.381 8.54 0.00 0.00 3.84
690 2336 2.945080 TCCGTAGACCACCTATCGAT 57.055 50.000 2.16 2.16 0.00 3.59
691 2337 2.371179 AGATCCGTAGACCACCTATCGA 59.629 50.000 0.00 0.00 0.00 3.59
692 2338 2.780714 AGATCCGTAGACCACCTATCG 58.219 52.381 0.00 0.00 0.00 2.92
693 2339 5.163281 TCTAGATCCGTAGACCACCTATC 57.837 47.826 0.00 0.00 0.00 2.08
694 2340 5.014333 ACATCTAGATCCGTAGACCACCTAT 59.986 44.000 1.03 0.00 31.75 2.57
695 2341 4.350225 ACATCTAGATCCGTAGACCACCTA 59.650 45.833 1.03 0.00 31.75 3.08
696 2342 3.138653 ACATCTAGATCCGTAGACCACCT 59.861 47.826 1.03 0.00 31.75 4.00
697 2343 3.488363 ACATCTAGATCCGTAGACCACC 58.512 50.000 1.03 0.00 31.75 4.61
698 2344 6.821031 ATTACATCTAGATCCGTAGACCAC 57.179 41.667 1.03 0.00 31.75 4.16
699 2345 7.834881 AAATTACATCTAGATCCGTAGACCA 57.165 36.000 1.03 0.00 31.75 4.02
741 2387 9.860898 CGATCTACTATTGACCATTAATCATGA 57.139 33.333 0.00 0.00 34.31 3.07
742 2388 9.091784 CCGATCTACTATTGACCATTAATCATG 57.908 37.037 0.00 0.00 0.00 3.07
743 2389 9.035890 TCCGATCTACTATTGACCATTAATCAT 57.964 33.333 0.00 0.00 0.00 2.45
744 2390 8.417273 TCCGATCTACTATTGACCATTAATCA 57.583 34.615 0.00 0.00 0.00 2.57
745 2391 9.360093 CTTCCGATCTACTATTGACCATTAATC 57.640 37.037 0.00 0.00 0.00 1.75
746 2392 8.871125 ACTTCCGATCTACTATTGACCATTAAT 58.129 33.333 0.00 0.00 0.00 1.40
747 2393 8.246430 ACTTCCGATCTACTATTGACCATTAA 57.754 34.615 0.00 0.00 0.00 1.40
748 2394 7.834881 ACTTCCGATCTACTATTGACCATTA 57.165 36.000 0.00 0.00 0.00 1.90
749 2395 6.732896 ACTTCCGATCTACTATTGACCATT 57.267 37.500 0.00 0.00 0.00 3.16
750 2396 6.732896 AACTTCCGATCTACTATTGACCAT 57.267 37.500 0.00 0.00 0.00 3.55
751 2397 6.540438 AAACTTCCGATCTACTATTGACCA 57.460 37.500 0.00 0.00 0.00 4.02
752 2398 7.266400 AGAAAACTTCCGATCTACTATTGACC 58.734 38.462 0.00 0.00 0.00 4.02
753 2399 8.705048 AAGAAAACTTCCGATCTACTATTGAC 57.295 34.615 0.00 0.00 0.00 3.18
784 2430 2.323999 TGGGATCCATGCCAAACTTT 57.676 45.000 15.23 0.00 45.79 2.66
801 2447 1.338337 CGGGATAGCTACACTCACTGG 59.662 57.143 0.00 0.00 0.00 4.00
803 2449 2.577700 CTCGGGATAGCTACACTCACT 58.422 52.381 0.00 0.00 0.00 3.41
804 2450 1.001158 GCTCGGGATAGCTACACTCAC 60.001 57.143 0.00 0.00 39.50 3.51
805 2451 1.319541 GCTCGGGATAGCTACACTCA 58.680 55.000 0.00 0.00 39.50 3.41
806 2452 0.599060 GGCTCGGGATAGCTACACTC 59.401 60.000 0.00 0.00 42.37 3.51
807 2453 0.106167 TGGCTCGGGATAGCTACACT 60.106 55.000 0.00 0.00 42.37 3.55
830 2476 1.078567 CAGTGGAGGAGAAGCAGCC 60.079 63.158 0.00 0.00 0.00 4.85
865 2511 7.095982 GCCGAGCTAAAGTAGATAGACATTTTC 60.096 40.741 0.00 0.00 0.00 2.29
880 2526 0.811616 ATTGCCTCGCCGAGCTAAAG 60.812 55.000 9.01 0.00 0.00 1.85
908 2554 2.494445 CACTGGATAGCGGACGCA 59.506 61.111 19.48 5.43 44.88 5.24
1047 2696 3.756727 GGCTTGGCTGCAGGCTTC 61.757 66.667 36.39 24.75 41.69 3.86
1768 3417 0.250124 TACAACCCGTTCCTGCACAG 60.250 55.000 0.00 0.00 0.00 3.66
2076 3725 3.118592 ACCCGTTTTGGCAAAAGAAATCA 60.119 39.130 24.69 0.00 35.87 2.57
2242 3891 2.689035 TTTGGCTGGCATCCACACGA 62.689 55.000 10.08 0.00 32.45 4.35
2244 3893 1.134946 GTATTTGGCTGGCATCCACAC 59.865 52.381 10.08 4.98 32.45 3.82
2254 3903 9.672673 AATAGTATAGCTTATGGTATTTGGCTG 57.327 33.333 5.74 0.00 37.89 4.85
2304 3953 2.280457 GCATCTACCCAGCGCTCC 60.280 66.667 7.13 0.00 0.00 4.70
2310 3959 2.045280 CTCCTCGGCATCTACCCAG 58.955 63.158 0.00 0.00 0.00 4.45
2382 4031 4.650734 TGCACAGGAAATTGATGAGTGTA 58.349 39.130 0.00 0.00 0.00 2.90
2385 4034 5.534207 TTTTGCACAGGAAATTGATGAGT 57.466 34.783 0.00 0.00 0.00 3.41
2415 4064 0.964358 GCTCAATTGCCTGCTCCACT 60.964 55.000 0.00 0.00 0.00 4.00
2454 4103 0.962356 GGTCAGGACTGCACCCATTG 60.962 60.000 0.00 0.00 0.00 2.82
2493 4142 4.463891 CCAGCTTTACCAAGTCCATCAATT 59.536 41.667 0.00 0.00 31.86 2.32
2535 4184 6.132056 GCTGATCATAACATTAAACAGCTCG 58.868 40.000 0.00 0.00 43.69 5.03
2544 4193 7.229306 GTGATCCCTTTGCTGATCATAACATTA 59.771 37.037 0.00 0.00 46.44 1.90
2604 4253 5.190677 GTTCTACCTTCTCTAGACAGAGCT 58.809 45.833 0.00 0.00 46.84 4.09
2766 4415 4.023137 GGCATGCACCCACTTGAT 57.977 55.556 21.36 0.00 0.00 2.57
2886 4535 2.564771 TGTCTCACCAAGTGCTTTCTG 58.435 47.619 0.00 0.00 32.98 3.02
2919 4568 2.159382 CGGTAAGGGCTGTTTGTTCAT 58.841 47.619 0.00 0.00 0.00 2.57
2925 4574 1.303317 CTGGCGGTAAGGGCTGTTT 60.303 57.895 0.00 0.00 0.00 2.83
2969 4618 2.036098 TCCTGCCAATGCCACCAG 59.964 61.111 0.00 0.00 36.33 4.00
2987 4636 2.359900 AGCTTCAAGTAGGCAAATCCG 58.640 47.619 0.00 0.00 40.77 4.18
3073 4724 6.932356 ACAATTAGAAGGCACTACATCATG 57.068 37.500 0.00 0.00 38.49 3.07
3155 4806 5.183228 ACTGGTACCCACAATAAGAATTCG 58.817 41.667 10.07 0.00 0.00 3.34
3182 4833 9.198475 ACAAGTAGGTGTAGCTAATGTTATAGT 57.802 33.333 0.00 0.00 0.00 2.12
3279 4930 8.193953 AGTTGGAATCCAATTTTCTGTAATGT 57.806 30.769 18.63 0.00 45.80 2.71
3312 4996 6.450845 TTCTCGCAGCATTTTTGTTAAATG 57.549 33.333 5.99 5.99 39.84 2.32
3313 4997 7.010923 TGTTTTCTCGCAGCATTTTTGTTAAAT 59.989 29.630 0.00 0.00 0.00 1.40
3320 5029 6.215845 AGTTATGTTTTCTCGCAGCATTTTT 58.784 32.000 0.00 0.00 0.00 1.94
3321 5030 5.772521 AGTTATGTTTTCTCGCAGCATTTT 58.227 33.333 0.00 0.00 0.00 1.82
3330 5039 5.560148 AGCGCATTTAGTTATGTTTTCTCG 58.440 37.500 11.47 0.00 0.00 4.04
3408 5122 5.760743 GCATTTTCTATCAGTTAGGGTCTCC 59.239 44.000 0.00 0.00 0.00 3.71
3479 5275 6.121776 TCCCATTACGGATACAATTGCTAT 57.878 37.500 5.05 2.96 36.56 2.97
3480 5276 5.547465 CTCCCATTACGGATACAATTGCTA 58.453 41.667 5.05 0.00 36.56 3.49
3481 5277 4.389374 CTCCCATTACGGATACAATTGCT 58.611 43.478 5.05 0.00 36.56 3.91
3482 5278 3.058224 GCTCCCATTACGGATACAATTGC 60.058 47.826 5.05 0.00 36.56 3.56
3483 5279 3.502211 GGCTCCCATTACGGATACAATTG 59.498 47.826 3.24 3.24 36.56 2.32
3484 5280 3.137544 TGGCTCCCATTACGGATACAATT 59.862 43.478 0.00 0.00 36.56 2.32
3832 5633 4.545823 TGTTTGTCTGGCTTTTAGTTCG 57.454 40.909 0.00 0.00 0.00 3.95
3846 5647 6.145371 ACATGCGGTAAATTGAATTGTTTGTC 59.855 34.615 0.00 0.00 0.00 3.18
3873 5674 2.283298 ACTGCTAAGATGGCGTCATTG 58.717 47.619 2.92 0.00 32.98 2.82
3874 5675 2.698855 ACTGCTAAGATGGCGTCATT 57.301 45.000 2.92 0.00 32.98 2.57
3879 5680 3.650070 TGAGATACTGCTAAGATGGCG 57.350 47.619 0.00 0.00 0.00 5.69
3891 5692 2.231478 CCCGGTTATGCGATGAGATACT 59.769 50.000 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.