Multiple sequence alignment - TraesCS4D01G296700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G296700 chr4D 100.000 6461 0 0 1 6461 465960514 465966974 0.000000e+00 11932.0
1 TraesCS4D01G296700 chr4D 80.723 83 12 4 6173 6254 454452883 454452962 1.950000e-05 62.1
2 TraesCS4D01G296700 chr4B 94.811 2621 90 16 3152 5736 583240774 583243384 0.000000e+00 4045.0
3 TraesCS4D01G296700 chr4B 93.522 1235 55 10 865 2083 583238177 583239402 0.000000e+00 1814.0
4 TraesCS4D01G296700 chr4B 93.446 1068 30 10 2078 3143 583239705 583240734 0.000000e+00 1548.0
5 TraesCS4D01G296700 chr4B 86.919 344 33 8 298 632 583237709 583238049 6.120000e-100 375.0
6 TraesCS4D01G296700 chr4B 87.463 335 24 12 5746 6078 583243424 583243742 2.850000e-98 370.0
7 TraesCS4D01G296700 chr4B 86.726 339 33 7 6129 6461 583332660 583332992 3.680000e-97 366.0
8 TraesCS4D01G296700 chr4B 82.812 128 17 4 667 792 583238055 583238179 6.850000e-20 110.0
9 TraesCS4D01G296700 chr4A 87.817 1617 122 32 2446 4007 4627704 4626108 0.000000e+00 1825.0
10 TraesCS4D01G296700 chr4A 94.020 1204 54 8 895 2083 4629603 4628403 0.000000e+00 1808.0
11 TraesCS4D01G296700 chr4A 90.061 1147 84 17 4006 5137 4626028 4624897 0.000000e+00 1459.0
12 TraesCS4D01G296700 chr4A 95.109 368 17 1 2078 2445 4628100 4627734 4.340000e-161 579.0
13 TraesCS4D01G296700 chr4A 84.601 539 40 19 5172 5689 4624895 4624379 4.500000e-136 496.0
14 TraesCS4D01G296700 chr6A 78.873 142 19 10 6182 6316 477905865 477906002 1.150000e-12 86.1
15 TraesCS4D01G296700 chr3D 84.091 88 14 0 547 634 538351639 538351552 1.150000e-12 86.1
16 TraesCS4D01G296700 chr6D 82.979 94 13 3 540 632 16280661 16280752 1.490000e-11 82.4
17 TraesCS4D01G296700 chr3B 82.955 88 15 0 545 632 713121802 713121715 5.370000e-11 80.5
18 TraesCS4D01G296700 chr2D 80.556 108 15 6 6172 6275 55317064 55317169 1.930000e-10 78.7
19 TraesCS4D01G296700 chr2D 87.143 70 3 6 6226 6290 640170478 640170410 2.500000e-09 75.0
20 TraesCS4D01G296700 chr2D 81.522 92 11 4 6167 6254 640170517 640170428 3.230000e-08 71.3
21 TraesCS4D01G296700 chr1B 81.818 99 13 4 6176 6270 607128770 607128673 1.930000e-10 78.7
22 TraesCS4D01G296700 chr1B 81.818 99 13 4 6176 6270 607313443 607313346 1.930000e-10 78.7
23 TraesCS4D01G296700 chr1B 85.714 70 9 1 6185 6254 336782193 336782261 8.990000e-09 73.1
24 TraesCS4D01G296700 chr7B 93.750 48 3 0 5693 5740 267348625 267348578 8.990000e-09 73.1
25 TraesCS4D01G296700 chr7A 97.222 36 1 0 841 876 28447122 28447157 1.950000e-05 62.1
26 TraesCS4D01G296700 chr5A 82.192 73 7 6 6223 6290 502979103 502979032 2.520000e-04 58.4
27 TraesCS4D01G296700 chr5B 76.724 116 18 8 6167 6278 532597902 532597792 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G296700 chr4D 465960514 465966974 6460 False 11932.0 11932 100.000000 1 6461 1 chr4D.!!$F2 6460
1 TraesCS4D01G296700 chr4B 583237709 583243742 6033 False 1377.0 4045 89.828833 298 6078 6 chr4B.!!$F2 5780
2 TraesCS4D01G296700 chr4A 4624379 4629603 5224 True 1233.4 1825 90.321600 895 5689 5 chr4A.!!$R1 4794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.033208 TTGGCTTCCCTAGGGCAATG 60.033 55.0 24.42 13.1 41.76 2.82 F
1216 1234 0.037590 CCACGGGGTTCTTGATTGGA 59.962 55.0 0.00 0.0 0.00 3.53 F
1360 1379 0.875059 GTAAGTTGTCAGGGCAGCAC 59.125 55.0 0.00 0.0 0.00 4.40 F
2654 3022 1.460504 GCCTCCCCTAAAGTTTTCCG 58.539 55.0 0.00 0.0 0.00 4.30 F
3268 3693 3.075148 GCTCTTGGTGGTAAAGGAGTTC 58.925 50.0 0.00 0.0 0.00 3.01 F
4514 5100 0.394565 CGATCACCCCCTTCATCCTC 59.605 60.0 0.00 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1503 1525 0.105964 AGGTACTCACAACTTGCGCA 59.894 50.000 5.66 5.66 0.00 6.09 R
2965 3349 0.746659 AAGTGCAGCTGTTTGTTCCC 59.253 50.000 16.64 0.00 0.00 3.97 R
3329 3756 0.251354 TGCCAGGAACAGAGCAGATC 59.749 55.000 0.00 0.00 0.00 2.75 R
3797 4252 3.668447 GCACTCTTCTGGAGAATCAACA 58.332 45.455 0.00 0.00 44.45 3.33 R
4777 5364 0.512952 CCACAAGAGGACGCGAAAAG 59.487 55.000 15.93 0.00 0.00 2.27 R
5550 6170 2.286831 CGCAAGCCAGATGATGATTCAC 60.287 50.000 0.00 0.00 33.85 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.395325 CAACAACAACAACAACAACAACA 57.605 34.783 0.00 0.00 0.00 3.33
23 24 5.799960 CAACAACAACAACAACAACAACAA 58.200 33.333 0.00 0.00 0.00 2.83
24 25 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
25 26 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
26 27 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
27 28 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
28 29 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
29 30 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
30 31 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
31 32 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
32 33 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
33 34 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
34 35 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
35 36 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
36 37 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
37 38 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
38 39 5.006165 ACAACAACAACAACAACAACAACAG 59.994 36.000 0.00 0.00 0.00 3.16
39 40 4.938080 ACAACAACAACAACAACAACAGA 58.062 34.783 0.00 0.00 0.00 3.41
40 41 5.352284 ACAACAACAACAACAACAACAGAA 58.648 33.333 0.00 0.00 0.00 3.02
41 42 5.812642 ACAACAACAACAACAACAACAGAAA 59.187 32.000 0.00 0.00 0.00 2.52
42 43 6.481644 ACAACAACAACAACAACAACAGAAAT 59.518 30.769 0.00 0.00 0.00 2.17
43 44 6.704512 ACAACAACAACAACAACAGAAATC 57.295 33.333 0.00 0.00 0.00 2.17
44 45 6.219473 ACAACAACAACAACAACAGAAATCA 58.781 32.000 0.00 0.00 0.00 2.57
45 46 6.873076 ACAACAACAACAACAACAGAAATCAT 59.127 30.769 0.00 0.00 0.00 2.45
46 47 7.387397 ACAACAACAACAACAACAGAAATCATT 59.613 29.630 0.00 0.00 0.00 2.57
47 48 7.903995 ACAACAACAACAACAGAAATCATTT 57.096 28.000 0.00 0.00 0.00 2.32
48 49 8.321650 ACAACAACAACAACAGAAATCATTTT 57.678 26.923 0.00 0.00 0.00 1.82
49 50 8.782144 ACAACAACAACAACAGAAATCATTTTT 58.218 25.926 0.00 0.00 0.00 1.94
76 77 6.645790 AGGAATGCCTTCATGACATATTTC 57.354 37.500 0.00 0.00 43.90 2.17
77 78 6.371278 AGGAATGCCTTCATGACATATTTCT 58.629 36.000 0.00 0.00 43.90 2.52
78 79 6.837568 AGGAATGCCTTCATGACATATTTCTT 59.162 34.615 0.00 0.00 43.90 2.52
79 80 7.343833 AGGAATGCCTTCATGACATATTTCTTT 59.656 33.333 0.00 0.00 43.90 2.52
80 81 8.632679 GGAATGCCTTCATGACATATTTCTTTA 58.367 33.333 0.00 0.00 32.70 1.85
85 86 9.173939 GCCTTCATGACATATTTCTTTAATTCG 57.826 33.333 0.00 0.00 0.00 3.34
86 87 9.669353 CCTTCATGACATATTTCTTTAATTCGG 57.331 33.333 0.00 0.00 0.00 4.30
92 93 9.549509 TGACATATTTCTTTAATTCGGAAAACG 57.450 29.630 0.00 0.00 46.11 3.60
93 94 8.905103 ACATATTTCTTTAATTCGGAAAACGG 57.095 30.769 0.00 0.00 44.45 4.44
94 95 8.517056 ACATATTTCTTTAATTCGGAAAACGGT 58.483 29.630 0.00 0.00 44.45 4.83
95 96 9.349145 CATATTTCTTTAATTCGGAAAACGGTT 57.651 29.630 0.00 0.00 44.45 4.44
97 98 8.732413 ATTTCTTTAATTCGGAAAACGGTTAC 57.268 30.769 0.00 0.00 44.45 2.50
98 99 6.857777 TCTTTAATTCGGAAAACGGTTACA 57.142 33.333 0.00 0.00 44.45 2.41
99 100 7.437793 TCTTTAATTCGGAAAACGGTTACAT 57.562 32.000 0.00 0.00 44.45 2.29
100 101 7.520686 TCTTTAATTCGGAAAACGGTTACATC 58.479 34.615 0.00 0.00 44.45 3.06
101 102 7.388500 TCTTTAATTCGGAAAACGGTTACATCT 59.612 33.333 0.00 0.00 44.45 2.90
102 103 5.952526 AATTCGGAAAACGGTTACATCTT 57.047 34.783 0.00 0.00 44.45 2.40
103 104 4.996062 TTCGGAAAACGGTTACATCTTC 57.004 40.909 0.00 0.00 44.45 2.87
104 105 3.992643 TCGGAAAACGGTTACATCTTCA 58.007 40.909 0.00 0.00 44.45 3.02
105 106 4.378774 TCGGAAAACGGTTACATCTTCAA 58.621 39.130 0.00 0.00 44.45 2.69
106 107 4.998672 TCGGAAAACGGTTACATCTTCAAT 59.001 37.500 0.00 0.00 44.45 2.57
107 108 5.470777 TCGGAAAACGGTTACATCTTCAATT 59.529 36.000 0.00 0.00 44.45 2.32
108 109 6.649973 TCGGAAAACGGTTACATCTTCAATTA 59.350 34.615 0.00 0.00 44.45 1.40
109 110 7.334921 TCGGAAAACGGTTACATCTTCAATTAT 59.665 33.333 0.00 0.00 44.45 1.28
110 111 7.638683 CGGAAAACGGTTACATCTTCAATTATC 59.361 37.037 0.00 0.00 39.42 1.75
111 112 8.455682 GGAAAACGGTTACATCTTCAATTATCA 58.544 33.333 0.00 0.00 0.00 2.15
112 113 9.274065 GAAAACGGTTACATCTTCAATTATCAC 57.726 33.333 0.00 0.00 0.00 3.06
113 114 6.920569 ACGGTTACATCTTCAATTATCACC 57.079 37.500 0.00 0.00 0.00 4.02
114 115 5.820947 ACGGTTACATCTTCAATTATCACCC 59.179 40.000 0.00 0.00 0.00 4.61
115 116 5.820423 CGGTTACATCTTCAATTATCACCCA 59.180 40.000 0.00 0.00 0.00 4.51
116 117 6.238374 CGGTTACATCTTCAATTATCACCCAC 60.238 42.308 0.00 0.00 0.00 4.61
117 118 6.828785 GGTTACATCTTCAATTATCACCCACT 59.171 38.462 0.00 0.00 0.00 4.00
118 119 7.990886 GGTTACATCTTCAATTATCACCCACTA 59.009 37.037 0.00 0.00 0.00 2.74
119 120 9.046296 GTTACATCTTCAATTATCACCCACTAG 57.954 37.037 0.00 0.00 0.00 2.57
120 121 7.437713 ACATCTTCAATTATCACCCACTAGA 57.562 36.000 0.00 0.00 0.00 2.43
121 122 7.861629 ACATCTTCAATTATCACCCACTAGAA 58.138 34.615 0.00 0.00 0.00 2.10
122 123 8.328758 ACATCTTCAATTATCACCCACTAGAAA 58.671 33.333 0.00 0.00 0.00 2.52
123 124 9.347240 CATCTTCAATTATCACCCACTAGAAAT 57.653 33.333 0.00 0.00 0.00 2.17
125 126 9.832445 TCTTCAATTATCACCCACTAGAAATAC 57.168 33.333 0.00 0.00 0.00 1.89
126 127 9.613428 CTTCAATTATCACCCACTAGAAATACA 57.387 33.333 0.00 0.00 0.00 2.29
127 128 9.613428 TTCAATTATCACCCACTAGAAATACAG 57.387 33.333 0.00 0.00 0.00 2.74
128 129 8.988060 TCAATTATCACCCACTAGAAATACAGA 58.012 33.333 0.00 0.00 0.00 3.41
129 130 9.613428 CAATTATCACCCACTAGAAATACAGAA 57.387 33.333 0.00 0.00 0.00 3.02
131 132 9.838339 ATTATCACCCACTAGAAATACAGAAAG 57.162 33.333 0.00 0.00 0.00 2.62
132 133 6.681729 TCACCCACTAGAAATACAGAAAGT 57.318 37.500 0.00 0.00 0.00 2.66
133 134 7.074653 TCACCCACTAGAAATACAGAAAGTT 57.925 36.000 0.00 0.00 0.00 2.66
134 135 7.159372 TCACCCACTAGAAATACAGAAAGTTC 58.841 38.462 0.00 0.00 0.00 3.01
135 136 7.016268 TCACCCACTAGAAATACAGAAAGTTCT 59.984 37.037 0.00 0.00 38.25 3.01
149 150 6.336842 AGAAAGTTCTGATTCCCAACAATG 57.663 37.500 0.00 0.00 35.89 2.82
150 151 5.835280 AGAAAGTTCTGATTCCCAACAATGT 59.165 36.000 0.00 0.00 35.89 2.71
151 152 6.324770 AGAAAGTTCTGATTCCCAACAATGTT 59.675 34.615 0.00 0.00 35.89 2.71
152 153 5.712152 AGTTCTGATTCCCAACAATGTTC 57.288 39.130 0.00 0.00 0.00 3.18
153 154 5.139727 AGTTCTGATTCCCAACAATGTTCA 58.860 37.500 0.00 0.00 0.00 3.18
154 155 5.776716 AGTTCTGATTCCCAACAATGTTCAT 59.223 36.000 0.00 0.00 0.00 2.57
155 156 6.268387 AGTTCTGATTCCCAACAATGTTCATT 59.732 34.615 0.00 0.00 0.00 2.57
156 157 6.028146 TCTGATTCCCAACAATGTTCATTG 57.972 37.500 19.75 19.75 37.54 2.82
157 158 5.774184 TCTGATTCCCAACAATGTTCATTGA 59.226 36.000 25.74 8.20 35.60 2.57
158 159 6.267242 TCTGATTCCCAACAATGTTCATTGAA 59.733 34.615 25.74 13.24 35.60 2.69
159 160 6.222389 TGATTCCCAACAATGTTCATTGAAC 58.778 36.000 25.74 20.27 42.26 3.18
160 161 4.599047 TCCCAACAATGTTCATTGAACC 57.401 40.909 25.74 8.96 41.35 3.62
161 162 3.323403 TCCCAACAATGTTCATTGAACCC 59.677 43.478 25.74 3.89 41.35 4.11
162 163 3.324556 CCCAACAATGTTCATTGAACCCT 59.675 43.478 25.74 10.59 41.35 4.34
163 164 4.559153 CCAACAATGTTCATTGAACCCTC 58.441 43.478 25.74 2.88 41.35 4.30
164 165 4.559153 CAACAATGTTCATTGAACCCTCC 58.441 43.478 25.74 2.54 41.35 4.30
165 166 3.165071 ACAATGTTCATTGAACCCTCCC 58.835 45.455 25.74 1.87 41.35 4.30
166 167 2.497273 CAATGTTCATTGAACCCTCCCC 59.503 50.000 23.22 1.21 41.35 4.81
167 168 1.153539 TGTTCATTGAACCCTCCCCA 58.846 50.000 23.22 3.70 41.35 4.96
168 169 1.715931 TGTTCATTGAACCCTCCCCAT 59.284 47.619 23.22 0.00 41.35 4.00
169 170 2.102578 GTTCATTGAACCCTCCCCATG 58.897 52.381 17.07 0.00 36.65 3.66
170 171 1.679981 TCATTGAACCCTCCCCATGA 58.320 50.000 0.00 0.00 0.00 3.07
171 172 1.284785 TCATTGAACCCTCCCCATGAC 59.715 52.381 0.00 0.00 0.00 3.06
172 173 1.285962 CATTGAACCCTCCCCATGACT 59.714 52.381 0.00 0.00 0.00 3.41
173 174 2.352561 TTGAACCCTCCCCATGACTA 57.647 50.000 0.00 0.00 0.00 2.59
174 175 1.879575 TGAACCCTCCCCATGACTAG 58.120 55.000 0.00 0.00 0.00 2.57
175 176 0.470341 GAACCCTCCCCATGACTAGC 59.530 60.000 0.00 0.00 0.00 3.42
176 177 0.044855 AACCCTCCCCATGACTAGCT 59.955 55.000 0.00 0.00 0.00 3.32
177 178 0.941963 ACCCTCCCCATGACTAGCTA 59.058 55.000 0.00 0.00 0.00 3.32
178 179 1.294068 ACCCTCCCCATGACTAGCTAA 59.706 52.381 0.00 0.00 0.00 3.09
179 180 1.694696 CCCTCCCCATGACTAGCTAAC 59.305 57.143 0.00 0.00 0.00 2.34
180 181 2.398588 CCTCCCCATGACTAGCTAACA 58.601 52.381 0.00 0.00 0.00 2.41
181 182 2.103263 CCTCCCCATGACTAGCTAACAC 59.897 54.545 0.00 0.00 0.00 3.32
182 183 2.766263 CTCCCCATGACTAGCTAACACA 59.234 50.000 0.00 0.00 0.00 3.72
183 184 3.384168 TCCCCATGACTAGCTAACACAT 58.616 45.455 0.00 0.00 0.00 3.21
184 185 3.134623 TCCCCATGACTAGCTAACACATG 59.865 47.826 19.02 19.02 38.28 3.21
185 186 3.134623 CCCCATGACTAGCTAACACATGA 59.865 47.826 23.76 0.00 40.13 3.07
186 187 4.384098 CCCCATGACTAGCTAACACATGAA 60.384 45.833 23.76 0.00 40.13 2.57
187 188 4.572389 CCCATGACTAGCTAACACATGAAC 59.428 45.833 23.76 4.36 40.13 3.18
188 189 4.572389 CCATGACTAGCTAACACATGAACC 59.428 45.833 23.76 0.89 40.13 3.62
189 190 3.845178 TGACTAGCTAACACATGAACCG 58.155 45.455 0.00 0.00 0.00 4.44
190 191 3.257375 TGACTAGCTAACACATGAACCGT 59.743 43.478 0.00 0.00 0.00 4.83
191 192 3.585862 ACTAGCTAACACATGAACCGTG 58.414 45.455 0.00 0.00 40.32 4.94
199 200 2.227865 ACACATGAACCGTGTTATTGGC 59.772 45.455 0.00 0.00 45.12 4.52
200 201 2.487762 CACATGAACCGTGTTATTGGCT 59.512 45.455 0.00 0.00 30.47 4.75
201 202 3.057596 CACATGAACCGTGTTATTGGCTT 60.058 43.478 0.00 0.00 30.47 4.35
202 203 3.190535 ACATGAACCGTGTTATTGGCTTC 59.809 43.478 0.00 0.00 28.11 3.86
203 204 2.156098 TGAACCGTGTTATTGGCTTCC 58.844 47.619 0.00 0.00 0.00 3.46
204 205 1.471287 GAACCGTGTTATTGGCTTCCC 59.529 52.381 0.00 0.00 0.00 3.97
205 206 0.696501 ACCGTGTTATTGGCTTCCCT 59.303 50.000 0.00 0.00 0.00 4.20
206 207 1.910671 ACCGTGTTATTGGCTTCCCTA 59.089 47.619 0.00 0.00 0.00 3.53
207 208 2.093128 ACCGTGTTATTGGCTTCCCTAG 60.093 50.000 0.00 0.00 0.00 3.02
208 209 2.561569 CGTGTTATTGGCTTCCCTAGG 58.438 52.381 0.06 0.06 0.00 3.02
209 210 2.745152 CGTGTTATTGGCTTCCCTAGGG 60.745 54.545 23.22 23.22 0.00 3.53
210 211 1.214424 TGTTATTGGCTTCCCTAGGGC 59.786 52.381 24.42 11.59 34.68 5.19
211 212 1.214424 GTTATTGGCTTCCCTAGGGCA 59.786 52.381 24.42 12.23 36.25 5.36
212 213 3.930144 TTGGCTTCCCTAGGGCAA 58.070 55.556 24.42 17.89 43.78 4.52
213 214 2.408920 TTGGCTTCCCTAGGGCAAT 58.591 52.632 24.42 0.00 41.76 3.56
214 215 0.033208 TTGGCTTCCCTAGGGCAATG 60.033 55.000 24.42 13.10 41.76 2.82
215 216 0.918799 TGGCTTCCCTAGGGCAATGA 60.919 55.000 24.42 1.76 35.13 2.57
216 217 0.258774 GGCTTCCCTAGGGCAATGAA 59.741 55.000 24.42 10.82 34.68 2.57
217 218 1.133356 GGCTTCCCTAGGGCAATGAAT 60.133 52.381 24.42 0.00 34.68 2.57
218 219 2.108250 GGCTTCCCTAGGGCAATGAATA 59.892 50.000 24.42 0.00 34.68 1.75
219 220 3.436470 GGCTTCCCTAGGGCAATGAATAA 60.436 47.826 24.42 8.52 34.68 1.40
220 221 4.215109 GCTTCCCTAGGGCAATGAATAAA 58.785 43.478 24.42 7.76 34.68 1.40
221 222 4.649218 GCTTCCCTAGGGCAATGAATAAAA 59.351 41.667 24.42 7.00 34.68 1.52
222 223 5.451937 GCTTCCCTAGGGCAATGAATAAAAC 60.452 44.000 24.42 0.25 34.68 2.43
223 224 5.466127 TCCCTAGGGCAATGAATAAAACT 57.534 39.130 24.42 0.00 34.68 2.66
224 225 6.584471 TCCCTAGGGCAATGAATAAAACTA 57.416 37.500 24.42 0.00 34.68 2.24
225 226 6.975949 TCCCTAGGGCAATGAATAAAACTAA 58.024 36.000 24.42 0.00 34.68 2.24
226 227 6.831868 TCCCTAGGGCAATGAATAAAACTAAC 59.168 38.462 24.42 0.00 34.68 2.34
227 228 6.238648 CCCTAGGGCAATGAATAAAACTAACG 60.239 42.308 16.90 0.00 0.00 3.18
228 229 6.540914 CCTAGGGCAATGAATAAAACTAACGA 59.459 38.462 0.00 0.00 0.00 3.85
229 230 7.228706 CCTAGGGCAATGAATAAAACTAACGAT 59.771 37.037 0.00 0.00 0.00 3.73
230 231 6.795399 AGGGCAATGAATAAAACTAACGATG 58.205 36.000 0.00 0.00 0.00 3.84
231 232 6.601613 AGGGCAATGAATAAAACTAACGATGA 59.398 34.615 0.00 0.00 0.00 2.92
232 233 7.285401 AGGGCAATGAATAAAACTAACGATGAT 59.715 33.333 0.00 0.00 0.00 2.45
233 234 7.591426 GGGCAATGAATAAAACTAACGATGATC 59.409 37.037 0.00 0.00 0.00 2.92
234 235 8.128582 GGCAATGAATAAAACTAACGATGATCA 58.871 33.333 0.00 0.00 0.00 2.92
235 236 9.502145 GCAATGAATAAAACTAACGATGATCAA 57.498 29.630 0.00 0.00 0.00 2.57
242 243 9.825972 ATAAAACTAACGATGATCAAACTTGTG 57.174 29.630 0.00 0.00 0.00 3.33
243 244 7.490962 AAACTAACGATGATCAAACTTGTGA 57.509 32.000 0.00 0.00 0.00 3.58
244 245 7.490962 AACTAACGATGATCAAACTTGTGAA 57.509 32.000 0.00 0.00 0.00 3.18
245 246 7.672983 ACTAACGATGATCAAACTTGTGAAT 57.327 32.000 0.00 0.00 0.00 2.57
246 247 8.771920 ACTAACGATGATCAAACTTGTGAATA 57.228 30.769 0.00 0.00 0.00 1.75
247 248 9.214957 ACTAACGATGATCAAACTTGTGAATAA 57.785 29.630 0.00 0.00 0.00 1.40
248 249 9.694520 CTAACGATGATCAAACTTGTGAATAAG 57.305 33.333 0.00 0.00 0.00 1.73
249 250 7.905604 ACGATGATCAAACTTGTGAATAAGA 57.094 32.000 0.00 0.00 0.00 2.10
250 251 8.322906 ACGATGATCAAACTTGTGAATAAGAA 57.677 30.769 0.00 0.00 0.00 2.52
251 252 8.783093 ACGATGATCAAACTTGTGAATAAGAAA 58.217 29.630 0.00 0.00 0.00 2.52
252 253 9.611284 CGATGATCAAACTTGTGAATAAGAAAA 57.389 29.630 0.00 0.00 0.00 2.29
275 276 8.713765 AAATTACAATCATCGTTGATATTCGC 57.286 30.769 9.33 0.00 41.83 4.70
276 277 4.374990 ACAATCATCGTTGATATTCGCG 57.625 40.909 9.33 0.00 41.83 5.87
277 278 3.148487 CAATCATCGTTGATATTCGCGC 58.852 45.455 9.33 0.00 41.83 6.86
278 279 2.134201 TCATCGTTGATATTCGCGCT 57.866 45.000 5.56 0.00 0.00 5.92
279 280 1.786579 TCATCGTTGATATTCGCGCTG 59.213 47.619 5.56 0.00 0.00 5.18
280 281 1.136529 CATCGTTGATATTCGCGCTGG 60.137 52.381 5.56 0.00 0.00 4.85
281 282 0.179121 TCGTTGATATTCGCGCTGGT 60.179 50.000 5.56 0.00 0.00 4.00
282 283 0.229753 CGTTGATATTCGCGCTGGTC 59.770 55.000 5.56 0.00 0.00 4.02
283 284 0.582005 GTTGATATTCGCGCTGGTCC 59.418 55.000 5.56 0.00 0.00 4.46
284 285 0.874175 TTGATATTCGCGCTGGTCCG 60.874 55.000 5.56 0.00 0.00 4.79
285 286 1.007734 GATATTCGCGCTGGTCCGA 60.008 57.895 5.56 0.00 0.00 4.55
286 287 0.388649 GATATTCGCGCTGGTCCGAT 60.389 55.000 5.56 0.00 33.04 4.18
287 288 0.388649 ATATTCGCGCTGGTCCGATC 60.389 55.000 5.56 0.00 33.04 3.69
288 289 2.726850 TATTCGCGCTGGTCCGATCG 62.727 60.000 8.51 8.51 33.04 3.69
290 291 4.847516 CGCGCTGGTCCGATCGAA 62.848 66.667 18.66 0.00 0.00 3.71
291 292 2.279517 GCGCTGGTCCGATCGAAT 60.280 61.111 18.66 0.00 0.00 3.34
292 293 1.007734 GCGCTGGTCCGATCGAATA 60.008 57.895 18.66 0.00 0.00 1.75
293 294 0.596600 GCGCTGGTCCGATCGAATAA 60.597 55.000 18.66 0.00 0.00 1.40
294 295 1.129326 CGCTGGTCCGATCGAATAAC 58.871 55.000 18.66 8.87 0.00 1.89
295 296 1.499049 GCTGGTCCGATCGAATAACC 58.501 55.000 18.66 17.51 0.00 2.85
296 297 1.872653 GCTGGTCCGATCGAATAACCC 60.873 57.143 18.66 7.16 0.00 4.11
314 315 3.910989 ACCCCCATTTTATAAGGTGCTC 58.089 45.455 0.00 0.00 0.00 4.26
316 317 4.145052 CCCCCATTTTATAAGGTGCTCTC 58.855 47.826 0.00 0.00 0.00 3.20
336 337 6.208988 TCTCAGAATAATGTTAGCGAGTGT 57.791 37.500 0.00 0.00 0.00 3.55
350 351 5.786401 AGCGAGTGTTTAGCTAAATTCAG 57.214 39.130 21.28 12.92 39.74 3.02
372 373 8.651589 TCAGTAGAATATAGGGTAGAACCATG 57.348 38.462 0.00 0.00 41.02 3.66
383 384 5.010282 GGGTAGAACCATGACTTGAATTGT 58.990 41.667 0.00 0.00 41.02 2.71
384 385 5.106157 GGGTAGAACCATGACTTGAATTGTG 60.106 44.000 0.00 0.00 41.02 3.33
392 393 4.422073 TGACTTGAATTGTGTCTGGTCT 57.578 40.909 0.00 0.00 0.00 3.85
394 395 6.114187 TGACTTGAATTGTGTCTGGTCTAT 57.886 37.500 0.00 0.00 0.00 1.98
435 436 6.598850 TGCTCATGCTGATTGTAAAGACATAA 59.401 34.615 0.00 0.00 40.48 1.90
501 509 6.578163 TTTTGCATCATCTCAATCACTTCA 57.422 33.333 0.00 0.00 0.00 3.02
514 523 3.823281 TCACTTCAAACGGTCCACTTA 57.177 42.857 0.00 0.00 0.00 2.24
530 539 7.762615 CGGTCCACTTAGACAATCAACTTATTA 59.237 37.037 0.00 0.00 38.59 0.98
535 544 8.391106 CACTTAGACAATCAACTTATTACAGCC 58.609 37.037 0.00 0.00 0.00 4.85
569 578 5.950758 TTTTGCATGGTATTACGTGTCTT 57.049 34.783 0.00 0.00 0.00 3.01
570 579 7.436430 TTTTTGCATGGTATTACGTGTCTTA 57.564 32.000 0.00 0.00 0.00 2.10
602 611 6.363357 TCATATGAATCATAGAACAAGTCGCG 59.637 38.462 9.01 0.00 29.42 5.87
606 615 3.835378 TCATAGAACAAGTCGCGTACA 57.165 42.857 5.77 0.00 0.00 2.90
610 619 3.844577 AGAACAAGTCGCGTACATACT 57.155 42.857 5.77 0.00 0.00 2.12
614 623 2.182825 CAAGTCGCGTACATACTGACC 58.817 52.381 5.77 0.00 32.86 4.02
617 626 0.736636 TCGCGTACATACTGACCTGG 59.263 55.000 5.77 0.00 0.00 4.45
618 627 0.870307 CGCGTACATACTGACCTGGC 60.870 60.000 0.00 0.00 0.00 4.85
623 632 3.938963 CGTACATACTGACCTGGCAAAAT 59.061 43.478 0.00 0.00 0.00 1.82
625 634 4.789012 ACATACTGACCTGGCAAAATTG 57.211 40.909 0.00 0.00 0.00 2.32
632 641 4.692228 TGACCTGGCAAAATTGAAAAGAC 58.308 39.130 0.00 0.00 0.00 3.01
634 643 5.096443 ACCTGGCAAAATTGAAAAGACAA 57.904 34.783 0.00 0.00 0.00 3.18
637 646 5.353678 CCTGGCAAAATTGAAAAGACAACAA 59.646 36.000 0.00 0.00 32.50 2.83
638 647 6.038492 CCTGGCAAAATTGAAAAGACAACAAT 59.962 34.615 0.00 0.00 36.07 2.71
639 648 7.388460 TGGCAAAATTGAAAAGACAACAATT 57.612 28.000 0.00 0.00 43.14 2.32
686 695 5.458041 ACAAATTGCTAGTCTTTGCACAT 57.542 34.783 11.35 0.00 39.05 3.21
698 707 5.295787 AGTCTTTGCACATCGAAACACTAAA 59.704 36.000 0.00 0.00 0.00 1.85
699 708 5.968848 GTCTTTGCACATCGAAACACTAAAA 59.031 36.000 0.00 0.00 0.00 1.52
700 709 6.470877 GTCTTTGCACATCGAAACACTAAAAA 59.529 34.615 0.00 0.00 0.00 1.94
731 740 5.638234 GGAGCATAACGAGTATTATCCAACC 59.362 44.000 0.00 0.00 29.69 3.77
810 821 9.775854 TTAGATACTACTATTCTGTTAGACGCT 57.224 33.333 0.00 0.00 0.00 5.07
811 822 8.680039 AGATACTACTATTCTGTTAGACGCTT 57.320 34.615 0.00 0.00 0.00 4.68
812 823 9.122779 AGATACTACTATTCTGTTAGACGCTTT 57.877 33.333 0.00 0.00 0.00 3.51
813 824 9.733219 GATACTACTATTCTGTTAGACGCTTTT 57.267 33.333 0.00 0.00 0.00 2.27
816 827 9.918630 ACTACTATTCTGTTAGACGCTTTTTAA 57.081 29.630 0.00 0.00 0.00 1.52
818 829 8.597662 ACTATTCTGTTAGACGCTTTTTAACA 57.402 30.769 0.00 0.00 36.28 2.41
819 830 8.493547 ACTATTCTGTTAGACGCTTTTTAACAC 58.506 33.333 0.00 0.00 34.57 3.32
820 831 6.913873 TTCTGTTAGACGCTTTTTAACACT 57.086 33.333 0.00 0.00 34.57 3.55
821 832 8.597662 ATTCTGTTAGACGCTTTTTAACACTA 57.402 30.769 0.00 0.00 34.57 2.74
822 833 7.633361 TCTGTTAGACGCTTTTTAACACTAG 57.367 36.000 0.00 0.00 34.57 2.57
823 834 7.205297 TCTGTTAGACGCTTTTTAACACTAGT 58.795 34.615 0.00 0.00 34.57 2.57
824 835 8.352201 TCTGTTAGACGCTTTTTAACACTAGTA 58.648 33.333 0.00 0.00 34.57 1.82
825 836 9.136952 CTGTTAGACGCTTTTTAACACTAGTAT 57.863 33.333 0.00 0.00 34.57 2.12
863 874 7.090953 GTCTTATAATATGAGACGGAGGGAG 57.909 44.000 9.02 0.00 36.39 4.30
864 875 6.660094 GTCTTATAATATGAGACGGAGGGAGT 59.340 42.308 9.02 0.00 36.39 3.85
865 876 7.828223 GTCTTATAATATGAGACGGAGGGAGTA 59.172 40.741 9.02 0.00 36.39 2.59
866 877 8.558312 TCTTATAATATGAGACGGAGGGAGTAT 58.442 37.037 0.00 0.00 0.00 2.12
1179 1191 2.252898 AGAGCAGAGGACCCTCCCT 61.253 63.158 12.19 9.09 43.70 4.20
1216 1234 0.037590 CCACGGGGTTCTTGATTGGA 59.962 55.000 0.00 0.00 0.00 3.53
1357 1376 1.880027 GTTGGTAAGTTGTCAGGGCAG 59.120 52.381 0.00 0.00 0.00 4.85
1360 1379 0.875059 GTAAGTTGTCAGGGCAGCAC 59.125 55.000 0.00 0.00 0.00 4.40
1503 1525 8.532186 TTCAGAAGACAGCTAGAAGAGATATT 57.468 34.615 0.00 0.00 0.00 1.28
1552 1574 6.300354 ACACAATTTCGTCCTTCTTAAGTG 57.700 37.500 1.63 0.00 0.00 3.16
1656 1678 4.314740 TGTTTTTCGAACCTGGGATTTG 57.685 40.909 0.00 0.00 0.00 2.32
2036 2060 3.072622 AGGAGTCCTTGTTTAGGTTCACC 59.927 47.826 5.62 0.00 45.03 4.02
2069 2100 6.804677 TCCAATTGATTTGTCCGAATTATGG 58.195 36.000 7.12 0.00 33.15 2.74
2391 2730 1.844687 ACCTTGAGACGGGTAGTACC 58.155 55.000 11.20 11.20 37.60 3.34
2653 3021 1.848652 GGCCTCCCCTAAAGTTTTCC 58.151 55.000 0.00 0.00 0.00 3.13
2654 3022 1.460504 GCCTCCCCTAAAGTTTTCCG 58.539 55.000 0.00 0.00 0.00 4.30
2836 3218 5.771666 AGAATGCCTGAACAAAGAAAGATCA 59.228 36.000 0.00 0.00 0.00 2.92
2886 3268 6.941857 TCAAGCTACATATACACAGGACAAA 58.058 36.000 0.00 0.00 0.00 2.83
2914 3297 9.683069 ATTGTCTTGTAAAAAGAATAGTTGCTG 57.317 29.630 0.00 0.00 0.00 4.41
2920 3303 8.964420 TGTAAAAAGAATAGTTGCTGCATAAC 57.036 30.769 1.84 0.00 0.00 1.89
2965 3349 6.721208 ACCCCTAATAATGATGCCTTAACATG 59.279 38.462 0.00 0.00 0.00 3.21
3068 3455 4.702612 TGGCACAAAAAGTAGACAAGTTCA 59.297 37.500 0.00 0.00 31.92 3.18
3080 3467 6.712095 AGTAGACAAGTTCAGATGCAATTTGA 59.288 34.615 0.00 0.00 35.42 2.69
3107 3501 5.849510 TCGACAACTTTCACTCAGGAAATA 58.150 37.500 0.00 0.00 36.29 1.40
3108 3502 6.464222 TCGACAACTTTCACTCAGGAAATAT 58.536 36.000 0.00 0.00 36.29 1.28
3109 3503 6.590292 TCGACAACTTTCACTCAGGAAATATC 59.410 38.462 0.00 0.00 36.29 1.63
3110 3504 6.454318 CGACAACTTTCACTCAGGAAATATCG 60.454 42.308 0.00 0.00 36.29 2.92
3111 3505 5.643777 ACAACTTTCACTCAGGAAATATCGG 59.356 40.000 0.00 0.00 36.29 4.18
3112 3506 4.192317 ACTTTCACTCAGGAAATATCGGC 58.808 43.478 0.00 0.00 36.29 5.54
3113 3507 4.080863 ACTTTCACTCAGGAAATATCGGCT 60.081 41.667 0.00 0.00 36.29 5.52
3199 3624 6.018751 TCGAGAAACTTGTCTTGTTCATTCTG 60.019 38.462 0.00 0.00 31.76 3.02
3205 3630 6.119536 ACTTGTCTTGTTCATTCTGTGGTAA 58.880 36.000 0.00 0.00 0.00 2.85
3268 3693 3.075148 GCTCTTGGTGGTAAAGGAGTTC 58.925 50.000 0.00 0.00 0.00 3.01
3329 3756 4.272489 TGGATGTTCCTTGGAGCTTTATG 58.728 43.478 5.19 0.00 37.46 1.90
3557 3986 5.991933 TTTCTTTGCCCAATACATTAGCA 57.008 34.783 0.00 0.00 0.00 3.49
3564 3993 3.498481 GCCCAATACATTAGCATCCAGGA 60.498 47.826 0.00 0.00 0.00 3.86
3797 4252 0.544223 TAATGTAGGTGCCATGCCGT 59.456 50.000 0.00 0.00 0.00 5.68
3818 4273 3.434984 GTGTTGATTCTCCAGAAGAGTGC 59.565 47.826 0.00 0.00 43.71 4.40
3842 4297 9.285770 TGCGCGAAGATAATATGTAAGTATTAG 57.714 33.333 12.10 0.00 31.93 1.73
3989 4479 7.867305 TCTATAGCCCGATATGAACTTAGAG 57.133 40.000 0.00 0.00 0.00 2.43
4147 4721 6.097554 CACCTCAGTATGGAAGTAGTGATCTT 59.902 42.308 0.00 0.00 34.46 2.40
4274 4851 2.423185 TGGAATTCTTATTGCAGTGCCG 59.577 45.455 13.72 0.00 37.20 5.69
4480 5066 7.195646 TGCACTTTGTTTCTCAGTGATAAAAG 58.804 34.615 5.35 7.96 32.77 2.27
4481 5067 7.066887 TGCACTTTGTTTCTCAGTGATAAAAGA 59.933 33.333 5.35 0.55 32.77 2.52
4514 5100 0.394565 CGATCACCCCCTTCATCCTC 59.605 60.000 0.00 0.00 0.00 3.71
4671 5258 7.393234 AGTTACTGTGCCTATTTCTTAAATGCA 59.607 33.333 0.00 0.00 30.28 3.96
4752 5339 3.820467 TGAGAAAAATGACGAAGGCACAT 59.180 39.130 0.00 0.00 0.00 3.21
4770 5357 3.695556 CACATGTGGGCATACAATTCTCA 59.304 43.478 18.51 0.00 33.69 3.27
4777 5364 2.952310 GGCATACAATTCTCACCCCTTC 59.048 50.000 0.00 0.00 0.00 3.46
4785 5373 0.320421 TCTCACCCCTTCTTTTCGCG 60.320 55.000 0.00 0.00 0.00 5.87
4828 5416 3.769739 TGCAGAAACTTCTCCTTAGCA 57.230 42.857 0.00 0.00 34.74 3.49
5001 5589 2.227388 AGAAGCAAAAACATCCTGCTCG 59.773 45.455 0.00 0.00 45.50 5.03
5041 5629 1.484038 TTGGAAAAGTGCCAGCAAGT 58.516 45.000 0.00 0.00 36.64 3.16
5058 5646 1.080638 AGTGGCCTGGTTCCCATTTA 58.919 50.000 3.32 0.00 32.95 1.40
5065 5653 2.557452 CCTGGTTCCCATTTACCAAGCT 60.557 50.000 0.00 0.00 43.46 3.74
5079 5667 1.483827 CCAAGCTCCAGTCTGCTCATA 59.516 52.381 0.00 0.00 38.75 2.15
5096 5684 4.142381 GCTCATACCAAACCTTCCATGTTC 60.142 45.833 0.00 0.00 0.00 3.18
5097 5685 4.340617 TCATACCAAACCTTCCATGTTCC 58.659 43.478 0.00 0.00 0.00 3.62
5098 5686 2.765689 ACCAAACCTTCCATGTTCCA 57.234 45.000 0.00 0.00 0.00 3.53
5099 5687 3.039252 ACCAAACCTTCCATGTTCCAA 57.961 42.857 0.00 0.00 0.00 3.53
5100 5688 2.965147 ACCAAACCTTCCATGTTCCAAG 59.035 45.455 0.00 0.00 0.00 3.61
5174 5762 8.660373 GTCTCAAAACAACTTGAATCTCGATAT 58.340 33.333 0.00 0.00 34.96 1.63
5189 5777 8.649973 AATCTCGATATGAAAGTACAGTTTCC 57.350 34.615 6.99 0.00 35.85 3.13
5319 5911 3.069300 TGGAAAAATTGCTGCTGCTGTTA 59.931 39.130 17.00 0.39 40.48 2.41
5333 5925 3.076621 TGCTGTTAACTTGCCTGATCTG 58.923 45.455 17.10 0.00 0.00 2.90
5335 5927 4.253685 GCTGTTAACTTGCCTGATCTGTA 58.746 43.478 7.22 0.00 0.00 2.74
5401 6008 7.254218 GCAAAATCTGACTTTTCTTTTGAGTGG 60.254 37.037 13.27 0.00 38.46 4.00
5425 6033 8.573035 TGGTAATAAAATCTGACTGTTTTGGAC 58.427 33.333 0.00 0.00 0.00 4.02
5457 6065 2.667418 CCTGTGAGGTCTGCCCTG 59.333 66.667 0.00 0.00 46.51 4.45
5550 6170 3.879295 AGATACCAATTCCTTGCACATCG 59.121 43.478 0.00 0.00 0.00 3.84
5554 6174 2.228582 CCAATTCCTTGCACATCGTGAA 59.771 45.455 0.00 0.00 35.23 3.18
5555 6175 3.119388 CCAATTCCTTGCACATCGTGAAT 60.119 43.478 0.00 0.00 35.23 2.57
5556 6176 4.100529 CAATTCCTTGCACATCGTGAATC 58.899 43.478 0.00 0.00 35.23 2.52
5689 6312 6.334102 TGAAATTATTACCGCCTTTGTTGT 57.666 33.333 0.00 0.00 0.00 3.32
5715 6338 1.177256 ATCCTATTCGGCGCGTAGGT 61.177 55.000 25.85 16.13 37.01 3.08
5739 6362 1.588932 GCTAGCGACATAGCGTGCA 60.589 57.895 0.00 0.00 38.90 4.57
5740 6363 1.145759 GCTAGCGACATAGCGTGCAA 61.146 55.000 0.00 0.00 38.90 4.08
5743 6366 0.670546 AGCGACATAGCGTGCAAACT 60.671 50.000 0.00 0.00 43.00 2.66
5907 6561 9.956871 CAATTTTTGCGAACATTTTTAAAATCG 57.043 25.926 14.38 14.38 0.00 3.34
5913 6567 6.472486 TGCGAACATTTTTAAAATCGTGAACA 59.528 30.769 17.99 8.60 0.00 3.18
5925 6579 7.749539 AAAATCGTGAACATTTTTCGAAGTT 57.250 28.000 0.00 0.00 30.74 2.66
5926 6580 6.732181 AATCGTGAACATTTTTCGAAGTTG 57.268 33.333 5.36 4.30 34.38 3.16
5927 6581 4.032355 TCGTGAACATTTTTCGAAGTTGC 58.968 39.130 5.36 0.00 0.00 4.17
5928 6582 3.788694 CGTGAACATTTTTCGAAGTTGCA 59.211 39.130 5.36 0.00 0.00 4.08
5929 6583 4.264145 CGTGAACATTTTTCGAAGTTGCAA 59.736 37.500 5.36 0.00 0.00 4.08
5930 6584 5.220117 CGTGAACATTTTTCGAAGTTGCAAA 60.220 36.000 0.00 0.29 0.00 3.68
6007 6661 8.945930 CAAATTTGTGAACAATTTTGGAATTCG 58.054 29.630 23.35 7.48 44.72 3.34
6018 6672 8.672815 ACAATTTTGGAATTCGTGAACATTTTT 58.327 25.926 0.00 0.00 33.25 1.94
6205 6859 7.613247 ATCATGAACATTATTTGAATTCGCG 57.387 32.000 0.00 0.00 0.00 5.87
6206 6860 6.780127 TCATGAACATTATTTGAATTCGCGA 58.220 32.000 3.71 3.71 0.00 5.87
6207 6861 7.247019 TCATGAACATTATTTGAATTCGCGAA 58.753 30.769 25.66 25.66 0.00 4.70
6208 6862 7.752686 TCATGAACATTATTTGAATTCGCGAAA 59.247 29.630 27.23 9.39 0.00 3.46
6209 6863 8.533965 CATGAACATTATTTGAATTCGCGAAAT 58.466 29.630 27.23 18.83 0.00 2.17
6210 6864 8.459521 TGAACATTATTTGAATTCGCGAAATT 57.540 26.923 27.23 19.25 40.34 1.82
6211 6865 8.920665 TGAACATTATTTGAATTCGCGAAATTT 58.079 25.926 27.23 16.79 37.70 1.82
6212 6866 9.186938 GAACATTATTTGAATTCGCGAAATTTG 57.813 29.630 27.23 15.97 37.70 2.32
6213 6867 7.674564 ACATTATTTGAATTCGCGAAATTTGG 58.325 30.769 27.23 10.04 37.70 3.28
6214 6868 7.330700 ACATTATTTGAATTCGCGAAATTTGGT 59.669 29.630 27.23 13.22 37.70 3.67
6215 6869 7.644986 TTATTTGAATTCGCGAAATTTGGTT 57.355 28.000 27.23 14.37 37.70 3.67
6216 6870 5.568747 TTTGAATTCGCGAAATTTGGTTC 57.431 34.783 27.23 22.17 37.70 3.62
6217 6871 4.230314 TGAATTCGCGAAATTTGGTTCA 57.770 36.364 27.23 24.39 37.70 3.18
6218 6872 4.611943 TGAATTCGCGAAATTTGGTTCAA 58.388 34.783 27.23 11.13 37.70 2.69
6219 6873 4.679197 TGAATTCGCGAAATTTGGTTCAAG 59.321 37.500 27.23 0.00 37.70 3.02
6220 6874 3.701532 TTCGCGAAATTTGGTTCAAGT 57.298 38.095 21.14 0.00 0.00 3.16
6221 6875 3.701532 TCGCGAAATTTGGTTCAAGTT 57.298 38.095 6.20 0.00 0.00 2.66
6222 6876 3.623863 TCGCGAAATTTGGTTCAAGTTC 58.376 40.909 6.20 0.00 0.00 3.01
6223 6877 3.065510 TCGCGAAATTTGGTTCAAGTTCA 59.934 39.130 6.20 0.00 0.00 3.18
6224 6878 3.980775 CGCGAAATTTGGTTCAAGTTCAT 59.019 39.130 0.00 0.00 0.00 2.57
6225 6879 4.143556 CGCGAAATTTGGTTCAAGTTCATG 60.144 41.667 0.00 0.00 0.00 3.07
6226 6880 4.981674 GCGAAATTTGGTTCAAGTTCATGA 59.018 37.500 0.00 0.00 0.00 3.07
6227 6881 5.461737 GCGAAATTTGGTTCAAGTTCATGAA 59.538 36.000 3.38 3.38 36.99 2.57
6284 6938 8.984891 ATGCGAACATTCTTTTAAAATCATGA 57.015 26.923 19.24 0.00 30.07 3.07
6285 6939 8.984891 TGCGAACATTCTTTTAAAATCATGAT 57.015 26.923 19.24 1.18 0.00 2.45
6286 6940 9.421806 TGCGAACATTCTTTTAAAATCATGATT 57.578 25.926 15.36 15.36 0.00 2.57
6351 7005 6.841119 CATAATCATGGACGTTGTTTTCTGA 58.159 36.000 0.00 0.00 0.00 3.27
6352 7006 5.766150 AATCATGGACGTTGTTTTCTGAA 57.234 34.783 0.00 0.00 0.00 3.02
6353 7007 5.964958 ATCATGGACGTTGTTTTCTGAAT 57.035 34.783 0.00 0.00 0.00 2.57
6354 7008 5.766150 TCATGGACGTTGTTTTCTGAATT 57.234 34.783 0.00 0.00 0.00 2.17
6355 7009 5.757886 TCATGGACGTTGTTTTCTGAATTC 58.242 37.500 0.00 0.00 0.00 2.17
6356 7010 5.298026 TCATGGACGTTGTTTTCTGAATTCA 59.702 36.000 8.12 8.12 0.00 2.57
6357 7011 5.568685 TGGACGTTGTTTTCTGAATTCAA 57.431 34.783 9.88 0.00 0.00 2.69
6358 7012 5.577835 TGGACGTTGTTTTCTGAATTCAAG 58.422 37.500 9.88 4.26 0.00 3.02
6359 7013 5.355630 TGGACGTTGTTTTCTGAATTCAAGA 59.644 36.000 9.88 6.56 0.00 3.02
6360 7014 6.039270 TGGACGTTGTTTTCTGAATTCAAGAT 59.961 34.615 9.88 0.00 0.00 2.40
6361 7015 6.578919 GGACGTTGTTTTCTGAATTCAAGATC 59.421 38.462 9.88 0.70 0.00 2.75
6362 7016 7.026631 ACGTTGTTTTCTGAATTCAAGATCA 57.973 32.000 9.88 3.20 0.00 2.92
6363 7017 7.651808 ACGTTGTTTTCTGAATTCAAGATCAT 58.348 30.769 9.88 0.00 0.00 2.45
6364 7018 8.137437 ACGTTGTTTTCTGAATTCAAGATCATT 58.863 29.630 9.88 0.00 0.00 2.57
6365 7019 8.971321 CGTTGTTTTCTGAATTCAAGATCATTT 58.029 29.630 9.88 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1 2 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2 3 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
3 4 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
4 5 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5 6 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
6 7 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
7 8 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
8 9 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
9 10 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
10 11 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
11 12 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
12 13 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
13 14 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
14 15 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
15 16 5.233050 TCTGTTGTTGTTGTTGTTGTTGTTG 59.767 36.000 0.00 0.00 0.00 3.33
16 17 5.352284 TCTGTTGTTGTTGTTGTTGTTGTT 58.648 33.333 0.00 0.00 0.00 2.83
17 18 4.938080 TCTGTTGTTGTTGTTGTTGTTGT 58.062 34.783 0.00 0.00 0.00 3.32
18 19 5.896922 TTCTGTTGTTGTTGTTGTTGTTG 57.103 34.783 0.00 0.00 0.00 3.33
19 20 6.703607 TGATTTCTGTTGTTGTTGTTGTTGTT 59.296 30.769 0.00 0.00 0.00 2.83
20 21 6.219473 TGATTTCTGTTGTTGTTGTTGTTGT 58.781 32.000 0.00 0.00 0.00 3.32
21 22 6.702972 TGATTTCTGTTGTTGTTGTTGTTG 57.297 33.333 0.00 0.00 0.00 3.33
22 23 7.903995 AATGATTTCTGTTGTTGTTGTTGTT 57.096 28.000 0.00 0.00 0.00 2.83
23 24 7.903995 AAATGATTTCTGTTGTTGTTGTTGT 57.096 28.000 0.00 0.00 0.00 3.32
47 48 4.588106 TGTCATGAAGGCATTCCTCAAAAA 59.412 37.500 8.88 0.00 43.40 1.94
48 49 4.151121 TGTCATGAAGGCATTCCTCAAAA 58.849 39.130 8.88 0.00 43.40 2.44
49 50 3.765381 TGTCATGAAGGCATTCCTCAAA 58.235 40.909 8.88 0.00 43.40 2.69
50 51 3.438216 TGTCATGAAGGCATTCCTCAA 57.562 42.857 8.88 0.00 43.40 3.02
51 52 3.657398 ATGTCATGAAGGCATTCCTCA 57.343 42.857 8.88 3.21 40.35 3.86
52 53 6.489361 AGAAATATGTCATGAAGGCATTCCTC 59.511 38.462 8.88 0.00 40.35 3.71
53 54 6.371278 AGAAATATGTCATGAAGGCATTCCT 58.629 36.000 8.88 0.00 40.35 3.36
54 55 6.645790 AGAAATATGTCATGAAGGCATTCC 57.354 37.500 8.88 0.00 40.35 3.01
59 60 9.173939 CGAATTAAAGAAATATGTCATGAAGGC 57.826 33.333 0.00 0.00 0.00 4.35
60 61 9.669353 CCGAATTAAAGAAATATGTCATGAAGG 57.331 33.333 0.00 0.00 0.00 3.46
66 67 9.549509 CGTTTTCCGAATTAAAGAAATATGTCA 57.450 29.630 0.00 0.00 39.56 3.58
67 68 9.006215 CCGTTTTCCGAATTAAAGAAATATGTC 57.994 33.333 0.00 0.00 39.56 3.06
68 69 8.517056 ACCGTTTTCCGAATTAAAGAAATATGT 58.483 29.630 0.00 0.00 39.56 2.29
69 70 8.905103 ACCGTTTTCCGAATTAAAGAAATATG 57.095 30.769 0.00 0.00 39.56 1.78
71 72 9.824534 GTAACCGTTTTCCGAATTAAAGAAATA 57.175 29.630 0.00 0.00 39.56 1.40
72 73 8.351461 TGTAACCGTTTTCCGAATTAAAGAAAT 58.649 29.630 0.00 0.00 39.56 2.17
73 74 7.701445 TGTAACCGTTTTCCGAATTAAAGAAA 58.299 30.769 0.00 0.00 39.56 2.52
74 75 7.256756 TGTAACCGTTTTCCGAATTAAAGAA 57.743 32.000 0.00 0.00 39.56 2.52
75 76 6.857777 TGTAACCGTTTTCCGAATTAAAGA 57.142 33.333 0.00 0.00 39.56 2.52
76 77 7.524065 AGATGTAACCGTTTTCCGAATTAAAG 58.476 34.615 0.00 0.00 39.56 1.85
77 78 7.437793 AGATGTAACCGTTTTCCGAATTAAA 57.562 32.000 0.00 0.00 39.56 1.52
78 79 7.172875 TGAAGATGTAACCGTTTTCCGAATTAA 59.827 33.333 0.00 0.00 39.56 1.40
79 80 6.649973 TGAAGATGTAACCGTTTTCCGAATTA 59.350 34.615 0.00 0.00 39.56 1.40
80 81 5.470777 TGAAGATGTAACCGTTTTCCGAATT 59.529 36.000 0.00 0.00 39.56 2.17
81 82 4.998672 TGAAGATGTAACCGTTTTCCGAAT 59.001 37.500 0.00 0.00 39.56 3.34
82 83 4.378774 TGAAGATGTAACCGTTTTCCGAA 58.621 39.130 0.00 0.00 39.56 4.30
83 84 3.992643 TGAAGATGTAACCGTTTTCCGA 58.007 40.909 0.00 0.00 39.56 4.55
84 85 4.735662 TTGAAGATGTAACCGTTTTCCG 57.264 40.909 0.00 0.00 0.00 4.30
85 86 8.455682 TGATAATTGAAGATGTAACCGTTTTCC 58.544 33.333 0.00 0.00 0.00 3.13
86 87 9.274065 GTGATAATTGAAGATGTAACCGTTTTC 57.726 33.333 0.00 0.00 0.00 2.29
87 88 8.241367 GGTGATAATTGAAGATGTAACCGTTTT 58.759 33.333 0.00 0.00 0.00 2.43
88 89 7.148137 GGGTGATAATTGAAGATGTAACCGTTT 60.148 37.037 0.00 0.00 0.00 3.60
89 90 6.317893 GGGTGATAATTGAAGATGTAACCGTT 59.682 38.462 0.00 0.00 0.00 4.44
90 91 5.820947 GGGTGATAATTGAAGATGTAACCGT 59.179 40.000 0.00 0.00 0.00 4.83
91 92 5.820423 TGGGTGATAATTGAAGATGTAACCG 59.180 40.000 0.00 0.00 0.00 4.44
92 93 6.828785 AGTGGGTGATAATTGAAGATGTAACC 59.171 38.462 0.00 0.00 0.00 2.85
93 94 7.865706 AGTGGGTGATAATTGAAGATGTAAC 57.134 36.000 0.00 0.00 0.00 2.50
94 95 8.988060 TCTAGTGGGTGATAATTGAAGATGTAA 58.012 33.333 0.00 0.00 0.00 2.41
95 96 8.547481 TCTAGTGGGTGATAATTGAAGATGTA 57.453 34.615 0.00 0.00 0.00 2.29
96 97 7.437713 TCTAGTGGGTGATAATTGAAGATGT 57.562 36.000 0.00 0.00 0.00 3.06
97 98 8.737168 TTTCTAGTGGGTGATAATTGAAGATG 57.263 34.615 0.00 0.00 0.00 2.90
99 100 9.832445 GTATTTCTAGTGGGTGATAATTGAAGA 57.168 33.333 0.00 0.00 0.00 2.87
100 101 9.613428 TGTATTTCTAGTGGGTGATAATTGAAG 57.387 33.333 0.00 0.00 0.00 3.02
101 102 9.613428 CTGTATTTCTAGTGGGTGATAATTGAA 57.387 33.333 0.00 0.00 0.00 2.69
102 103 8.988060 TCTGTATTTCTAGTGGGTGATAATTGA 58.012 33.333 0.00 0.00 0.00 2.57
103 104 9.613428 TTCTGTATTTCTAGTGGGTGATAATTG 57.387 33.333 0.00 0.00 0.00 2.32
105 106 9.838339 CTTTCTGTATTTCTAGTGGGTGATAAT 57.162 33.333 0.00 0.00 0.00 1.28
106 107 8.822805 ACTTTCTGTATTTCTAGTGGGTGATAA 58.177 33.333 0.00 0.00 0.00 1.75
107 108 8.375493 ACTTTCTGTATTTCTAGTGGGTGATA 57.625 34.615 0.00 0.00 0.00 2.15
108 109 7.259088 ACTTTCTGTATTTCTAGTGGGTGAT 57.741 36.000 0.00 0.00 0.00 3.06
109 110 6.681729 ACTTTCTGTATTTCTAGTGGGTGA 57.318 37.500 0.00 0.00 0.00 4.02
110 111 7.162082 AGAACTTTCTGTATTTCTAGTGGGTG 58.838 38.462 0.00 0.00 35.89 4.61
111 112 7.317722 AGAACTTTCTGTATTTCTAGTGGGT 57.682 36.000 0.00 0.00 35.89 4.51
126 127 5.835280 ACATTGTTGGGAATCAGAACTTTCT 59.165 36.000 0.00 0.00 38.25 2.52
127 128 6.089249 ACATTGTTGGGAATCAGAACTTTC 57.911 37.500 0.00 0.00 0.00 2.62
128 129 6.098124 TGAACATTGTTGGGAATCAGAACTTT 59.902 34.615 6.80 0.00 0.00 2.66
129 130 5.598005 TGAACATTGTTGGGAATCAGAACTT 59.402 36.000 6.80 0.00 0.00 2.66
130 131 5.139727 TGAACATTGTTGGGAATCAGAACT 58.860 37.500 6.80 0.00 0.00 3.01
131 132 5.452078 TGAACATTGTTGGGAATCAGAAC 57.548 39.130 6.80 0.00 0.00 3.01
132 133 6.267242 TCAATGAACATTGTTGGGAATCAGAA 59.733 34.615 21.56 1.52 46.15 3.02
133 134 5.774184 TCAATGAACATTGTTGGGAATCAGA 59.226 36.000 21.56 1.68 46.15 3.27
134 135 6.028146 TCAATGAACATTGTTGGGAATCAG 57.972 37.500 21.56 0.00 46.15 2.90
135 136 6.222389 GTTCAATGAACATTGTTGGGAATCA 58.778 36.000 20.08 0.00 46.15 2.57
136 137 5.639082 GGTTCAATGAACATTGTTGGGAATC 59.361 40.000 25.14 9.33 46.15 2.52
137 138 5.512921 GGGTTCAATGAACATTGTTGGGAAT 60.513 40.000 25.14 0.00 46.15 3.01
138 139 4.202305 GGGTTCAATGAACATTGTTGGGAA 60.202 41.667 25.14 9.77 46.15 3.97
139 140 3.323403 GGGTTCAATGAACATTGTTGGGA 59.677 43.478 25.14 5.03 46.15 4.37
140 141 3.324556 AGGGTTCAATGAACATTGTTGGG 59.675 43.478 25.14 2.50 46.15 4.12
141 142 4.559153 GAGGGTTCAATGAACATTGTTGG 58.441 43.478 25.14 2.80 46.15 3.77
142 143 4.559153 GGAGGGTTCAATGAACATTGTTG 58.441 43.478 25.14 4.38 46.15 3.33
143 144 3.578282 GGGAGGGTTCAATGAACATTGTT 59.422 43.478 25.14 0.63 46.15 2.83
144 145 3.165071 GGGAGGGTTCAATGAACATTGT 58.835 45.455 25.14 8.20 46.15 2.71
146 147 2.111613 TGGGGAGGGTTCAATGAACATT 59.888 45.455 25.14 13.68 43.54 2.71
147 148 1.715931 TGGGGAGGGTTCAATGAACAT 59.284 47.619 25.14 14.40 43.54 2.71
148 149 1.153539 TGGGGAGGGTTCAATGAACA 58.846 50.000 25.14 2.52 43.54 3.18
149 150 2.102578 CATGGGGAGGGTTCAATGAAC 58.897 52.381 17.16 17.16 41.32 3.18
150 151 1.999295 TCATGGGGAGGGTTCAATGAA 59.001 47.619 0.00 0.00 0.00 2.57
151 152 1.284785 GTCATGGGGAGGGTTCAATGA 59.715 52.381 0.00 0.00 0.00 2.57
152 153 1.285962 AGTCATGGGGAGGGTTCAATG 59.714 52.381 0.00 0.00 0.00 2.82
153 154 1.686236 AGTCATGGGGAGGGTTCAAT 58.314 50.000 0.00 0.00 0.00 2.57
154 155 2.196595 CTAGTCATGGGGAGGGTTCAA 58.803 52.381 0.00 0.00 0.00 2.69
155 156 1.879575 CTAGTCATGGGGAGGGTTCA 58.120 55.000 0.00 0.00 0.00 3.18
156 157 0.470341 GCTAGTCATGGGGAGGGTTC 59.530 60.000 0.00 0.00 0.00 3.62
157 158 0.044855 AGCTAGTCATGGGGAGGGTT 59.955 55.000 0.00 0.00 0.00 4.11
158 159 0.941963 TAGCTAGTCATGGGGAGGGT 59.058 55.000 0.00 0.00 0.00 4.34
159 160 1.694696 GTTAGCTAGTCATGGGGAGGG 59.305 57.143 0.00 0.00 0.00 4.30
160 161 2.103263 GTGTTAGCTAGTCATGGGGAGG 59.897 54.545 0.00 0.00 0.00 4.30
161 162 2.766263 TGTGTTAGCTAGTCATGGGGAG 59.234 50.000 0.00 0.00 0.00 4.30
162 163 2.827755 TGTGTTAGCTAGTCATGGGGA 58.172 47.619 0.00 0.00 0.00 4.81
163 164 3.134623 TCATGTGTTAGCTAGTCATGGGG 59.865 47.826 22.48 8.47 37.20 4.96
164 165 4.406648 TCATGTGTTAGCTAGTCATGGG 57.593 45.455 22.48 8.93 37.20 4.00
165 166 4.572389 GGTTCATGTGTTAGCTAGTCATGG 59.428 45.833 22.48 12.11 37.20 3.66
166 167 4.268644 CGGTTCATGTGTTAGCTAGTCATG 59.731 45.833 19.54 19.54 37.71 3.07
167 168 4.081642 ACGGTTCATGTGTTAGCTAGTCAT 60.082 41.667 0.00 0.00 0.00 3.06
168 169 3.257375 ACGGTTCATGTGTTAGCTAGTCA 59.743 43.478 0.00 0.00 0.00 3.41
169 170 3.612860 CACGGTTCATGTGTTAGCTAGTC 59.387 47.826 0.00 0.00 32.68 2.59
170 171 3.585862 CACGGTTCATGTGTTAGCTAGT 58.414 45.455 0.00 0.00 32.68 2.57
179 180 2.487762 AGCCAATAACACGGTTCATGTG 59.512 45.455 0.00 0.00 42.99 3.21
180 181 2.790433 AGCCAATAACACGGTTCATGT 58.210 42.857 0.00 0.00 0.00 3.21
181 182 3.427503 GGAAGCCAATAACACGGTTCATG 60.428 47.826 0.00 0.00 0.00 3.07
182 183 2.752903 GGAAGCCAATAACACGGTTCAT 59.247 45.455 0.00 0.00 0.00 2.57
183 184 2.156098 GGAAGCCAATAACACGGTTCA 58.844 47.619 0.00 0.00 0.00 3.18
184 185 1.471287 GGGAAGCCAATAACACGGTTC 59.529 52.381 0.00 0.00 0.00 3.62
185 186 1.074889 AGGGAAGCCAATAACACGGTT 59.925 47.619 0.00 0.00 0.00 4.44
186 187 0.696501 AGGGAAGCCAATAACACGGT 59.303 50.000 0.00 0.00 0.00 4.83
187 188 2.561569 CTAGGGAAGCCAATAACACGG 58.438 52.381 0.00 0.00 0.00 4.94
188 189 2.561569 CCTAGGGAAGCCAATAACACG 58.438 52.381 0.00 0.00 0.00 4.49
189 190 2.932261 CCCTAGGGAAGCCAATAACAC 58.068 52.381 24.99 0.00 37.50 3.32
190 191 1.214424 GCCCTAGGGAAGCCAATAACA 59.786 52.381 33.21 0.00 37.50 2.41
191 192 1.214424 TGCCCTAGGGAAGCCAATAAC 59.786 52.381 33.21 9.90 37.50 1.89
192 193 1.602440 TGCCCTAGGGAAGCCAATAA 58.398 50.000 33.21 1.37 37.50 1.40
193 194 1.602440 TTGCCCTAGGGAAGCCAATA 58.398 50.000 33.21 0.66 37.50 1.90
194 195 0.936691 ATTGCCCTAGGGAAGCCAAT 59.063 50.000 33.21 25.38 36.27 3.16
195 196 0.033208 CATTGCCCTAGGGAAGCCAA 60.033 55.000 33.21 24.33 36.27 4.52
196 197 0.918799 TCATTGCCCTAGGGAAGCCA 60.919 55.000 33.21 16.93 36.27 4.75
197 198 0.258774 TTCATTGCCCTAGGGAAGCC 59.741 55.000 33.21 14.23 36.27 4.35
198 199 2.371658 ATTCATTGCCCTAGGGAAGC 57.628 50.000 33.21 16.76 36.27 3.86
199 200 5.893824 AGTTTTATTCATTGCCCTAGGGAAG 59.106 40.000 33.21 16.57 36.27 3.46
200 201 5.837829 AGTTTTATTCATTGCCCTAGGGAA 58.162 37.500 33.21 20.65 37.45 3.97
201 202 5.466127 AGTTTTATTCATTGCCCTAGGGA 57.534 39.130 33.21 12.45 37.50 4.20
202 203 6.238648 CGTTAGTTTTATTCATTGCCCTAGGG 60.239 42.308 24.89 24.89 38.57 3.53
203 204 6.540914 TCGTTAGTTTTATTCATTGCCCTAGG 59.459 38.462 0.06 0.06 0.00 3.02
204 205 7.548196 TCGTTAGTTTTATTCATTGCCCTAG 57.452 36.000 0.00 0.00 0.00 3.02
205 206 7.771361 TCATCGTTAGTTTTATTCATTGCCCTA 59.229 33.333 0.00 0.00 0.00 3.53
206 207 6.601613 TCATCGTTAGTTTTATTCATTGCCCT 59.398 34.615 0.00 0.00 0.00 5.19
207 208 6.791303 TCATCGTTAGTTTTATTCATTGCCC 58.209 36.000 0.00 0.00 0.00 5.36
208 209 8.128582 TGATCATCGTTAGTTTTATTCATTGCC 58.871 33.333 0.00 0.00 0.00 4.52
209 210 9.502145 TTGATCATCGTTAGTTTTATTCATTGC 57.498 29.630 0.00 0.00 0.00 3.56
216 217 9.825972 CACAAGTTTGATCATCGTTAGTTTTAT 57.174 29.630 0.00 0.00 0.00 1.40
217 218 9.047371 TCACAAGTTTGATCATCGTTAGTTTTA 57.953 29.630 0.00 0.00 0.00 1.52
218 219 7.925993 TCACAAGTTTGATCATCGTTAGTTTT 58.074 30.769 0.00 0.00 0.00 2.43
219 220 7.490962 TCACAAGTTTGATCATCGTTAGTTT 57.509 32.000 0.00 0.00 0.00 2.66
220 221 7.490962 TTCACAAGTTTGATCATCGTTAGTT 57.509 32.000 0.00 0.00 0.00 2.24
221 222 7.672983 ATTCACAAGTTTGATCATCGTTAGT 57.327 32.000 0.00 0.00 0.00 2.24
222 223 9.694520 CTTATTCACAAGTTTGATCATCGTTAG 57.305 33.333 0.00 0.00 0.00 2.34
223 224 9.430623 TCTTATTCACAAGTTTGATCATCGTTA 57.569 29.630 0.00 0.00 0.00 3.18
224 225 8.322906 TCTTATTCACAAGTTTGATCATCGTT 57.677 30.769 0.00 0.00 0.00 3.85
225 226 7.905604 TCTTATTCACAAGTTTGATCATCGT 57.094 32.000 0.00 0.00 0.00 3.73
226 227 9.611284 TTTTCTTATTCACAAGTTTGATCATCG 57.389 29.630 0.00 0.00 0.00 3.84
249 250 9.169468 GCGAATATCAACGATGATTGTAATTTT 57.831 29.630 13.75 0.00 43.89 1.82
250 251 7.530525 CGCGAATATCAACGATGATTGTAATTT 59.469 33.333 13.75 0.00 43.89 1.82
251 252 7.009440 CGCGAATATCAACGATGATTGTAATT 58.991 34.615 13.75 7.23 43.89 1.40
252 253 6.525355 CGCGAATATCAACGATGATTGTAAT 58.475 36.000 13.75 0.00 43.89 1.89
253 254 5.611628 GCGCGAATATCAACGATGATTGTAA 60.612 40.000 12.10 0.00 43.89 2.41
254 255 4.143410 GCGCGAATATCAACGATGATTGTA 60.143 41.667 12.10 0.00 43.89 2.41
255 256 3.362986 GCGCGAATATCAACGATGATTGT 60.363 43.478 12.10 2.16 43.89 2.71
256 257 3.120889 AGCGCGAATATCAACGATGATTG 60.121 43.478 12.10 3.50 43.89 2.67
257 258 3.059884 AGCGCGAATATCAACGATGATT 58.940 40.909 12.10 0.00 43.89 2.57
259 260 1.786579 CAGCGCGAATATCAACGATGA 59.213 47.619 12.10 0.00 44.03 2.92
260 261 1.136529 CCAGCGCGAATATCAACGATG 60.137 52.381 12.10 0.00 41.24 3.84
261 262 1.139989 CCAGCGCGAATATCAACGAT 58.860 50.000 12.10 0.00 0.00 3.73
262 263 0.179121 ACCAGCGCGAATATCAACGA 60.179 50.000 12.10 0.00 0.00 3.85
263 264 0.229753 GACCAGCGCGAATATCAACG 59.770 55.000 12.10 0.00 0.00 4.10
264 265 0.582005 GGACCAGCGCGAATATCAAC 59.418 55.000 12.10 0.00 0.00 3.18
265 266 0.874175 CGGACCAGCGCGAATATCAA 60.874 55.000 12.10 0.00 0.00 2.57
266 267 1.299850 CGGACCAGCGCGAATATCA 60.300 57.895 12.10 0.00 0.00 2.15
267 268 0.388649 ATCGGACCAGCGCGAATATC 60.389 55.000 12.10 0.52 0.00 1.63
268 269 0.388649 GATCGGACCAGCGCGAATAT 60.389 55.000 12.10 0.00 0.00 1.28
269 270 1.007734 GATCGGACCAGCGCGAATA 60.008 57.895 12.10 0.00 0.00 1.75
270 271 2.279517 GATCGGACCAGCGCGAAT 60.280 61.111 12.10 0.00 0.00 3.34
271 272 4.847516 CGATCGGACCAGCGCGAA 62.848 66.667 12.10 0.00 0.00 4.70
273 274 2.726850 TATTCGATCGGACCAGCGCG 62.727 60.000 16.41 0.00 0.00 6.86
274 275 0.596600 TTATTCGATCGGACCAGCGC 60.597 55.000 16.41 0.00 0.00 5.92
275 276 1.129326 GTTATTCGATCGGACCAGCG 58.871 55.000 16.41 0.00 0.00 5.18
276 277 1.499049 GGTTATTCGATCGGACCAGC 58.501 55.000 16.41 2.50 0.00 4.85
277 278 1.270147 GGGGTTATTCGATCGGACCAG 60.270 57.143 16.41 0.00 32.00 4.00
278 279 0.754472 GGGGTTATTCGATCGGACCA 59.246 55.000 16.41 0.00 32.00 4.02
279 280 0.034476 GGGGGTTATTCGATCGGACC 59.966 60.000 16.41 16.77 0.00 4.46
280 281 0.754472 TGGGGGTTATTCGATCGGAC 59.246 55.000 16.41 9.01 0.00 4.79
281 282 1.724545 ATGGGGGTTATTCGATCGGA 58.275 50.000 16.41 7.00 0.00 4.55
282 283 2.561478 AATGGGGGTTATTCGATCGG 57.439 50.000 16.41 0.00 0.00 4.18
283 284 7.148306 CCTTATAAAATGGGGGTTATTCGATCG 60.148 40.741 9.36 9.36 0.00 3.69
284 285 7.668469 ACCTTATAAAATGGGGGTTATTCGATC 59.332 37.037 0.00 0.00 0.00 3.69
285 286 7.450323 CACCTTATAAAATGGGGGTTATTCGAT 59.550 37.037 0.00 0.00 0.00 3.59
286 287 6.773685 CACCTTATAAAATGGGGGTTATTCGA 59.226 38.462 0.00 0.00 0.00 3.71
287 288 6.516028 GCACCTTATAAAATGGGGGTTATTCG 60.516 42.308 0.00 0.00 0.00 3.34
288 289 6.553476 AGCACCTTATAAAATGGGGGTTATTC 59.447 38.462 0.00 0.00 29.85 1.75
289 290 6.449078 AGCACCTTATAAAATGGGGGTTATT 58.551 36.000 0.00 0.00 29.85 1.40
290 291 6.038170 AGCACCTTATAAAATGGGGGTTAT 57.962 37.500 0.00 0.00 29.85 1.89
291 292 5.194942 AGAGCACCTTATAAAATGGGGGTTA 59.805 40.000 0.00 0.00 34.87 2.85
292 293 4.016572 AGAGCACCTTATAAAATGGGGGTT 60.017 41.667 0.00 0.00 34.87 4.11
293 294 3.531814 AGAGCACCTTATAAAATGGGGGT 59.468 43.478 0.00 0.00 37.73 4.95
294 295 4.145052 GAGAGCACCTTATAAAATGGGGG 58.855 47.826 0.00 0.00 0.00 5.40
295 296 4.792068 TGAGAGCACCTTATAAAATGGGG 58.208 43.478 0.00 0.00 0.00 4.96
296 297 5.684704 TCTGAGAGCACCTTATAAAATGGG 58.315 41.667 0.00 0.00 0.00 4.00
314 315 6.893958 AACACTCGCTAACATTATTCTGAG 57.106 37.500 0.00 0.00 0.00 3.35
316 317 7.010552 AGCTAAACACTCGCTAACATTATTCTG 59.989 37.037 0.00 0.00 31.12 3.02
350 351 8.653036 AGTCATGGTTCTACCCTATATTCTAC 57.347 38.462 0.00 0.00 37.50 2.59
357 358 6.831664 ATTCAAGTCATGGTTCTACCCTAT 57.168 37.500 0.00 0.00 37.50 2.57
372 373 6.166279 TCATAGACCAGACACAATTCAAGTC 58.834 40.000 0.00 0.00 0.00 3.01
383 384 2.234661 CAAGGCACTCATAGACCAGACA 59.765 50.000 0.00 0.00 38.49 3.41
384 385 2.419297 CCAAGGCACTCATAGACCAGAC 60.419 54.545 0.00 0.00 38.49 3.51
392 393 1.748244 GCATGCTCCAAGGCACTCATA 60.748 52.381 11.37 0.00 45.36 2.15
394 395 1.676635 GCATGCTCCAAGGCACTCA 60.677 57.895 11.37 0.00 45.36 3.41
469 470 4.286549 TGAGATGATGCAAAATGGGGTTTT 59.713 37.500 0.00 0.00 40.59 2.43
476 484 7.033185 TGAAGTGATTGAGATGATGCAAAATG 58.967 34.615 0.00 0.00 0.00 2.32
501 509 4.345859 TGATTGTCTAAGTGGACCGTTT 57.654 40.909 0.00 0.00 35.54 3.60
514 523 7.944729 ATTGGCTGTAATAAGTTGATTGTCT 57.055 32.000 0.00 0.00 0.00 3.41
577 586 6.363357 CGCGACTTGTTCTATGATTCATATGA 59.637 38.462 0.00 0.00 0.00 2.15
582 591 3.845178 ACGCGACTTGTTCTATGATTCA 58.155 40.909 15.93 0.00 0.00 2.57
583 592 4.796830 TGTACGCGACTTGTTCTATGATTC 59.203 41.667 15.93 0.00 0.00 2.52
584 593 4.740268 TGTACGCGACTTGTTCTATGATT 58.260 39.130 15.93 0.00 0.00 2.57
588 597 5.065602 TCAGTATGTACGCGACTTGTTCTAT 59.934 40.000 15.93 0.00 37.40 1.98
592 601 3.240069 GTCAGTATGTACGCGACTTGTT 58.760 45.455 15.93 0.00 37.40 2.83
600 609 0.174845 TGCCAGGTCAGTATGTACGC 59.825 55.000 0.00 0.00 37.40 4.42
602 611 5.414454 TCAATTTTGCCAGGTCAGTATGTAC 59.586 40.000 0.00 0.00 37.40 2.90
606 615 6.267471 TCTTTTCAATTTTGCCAGGTCAGTAT 59.733 34.615 0.00 0.00 0.00 2.12
610 619 4.161189 TGTCTTTTCAATTTTGCCAGGTCA 59.839 37.500 0.00 0.00 0.00 4.02
614 623 6.419980 TTGTTGTCTTTTCAATTTTGCCAG 57.580 33.333 0.00 0.00 0.00 4.85
649 658 9.959749 CTAGCAATTTGTTGTCTAAACCTAAAA 57.040 29.630 0.00 0.00 0.00 1.52
650 659 9.127277 ACTAGCAATTTGTTGTCTAAACCTAAA 57.873 29.630 0.00 0.00 0.00 1.85
651 660 8.685838 ACTAGCAATTTGTTGTCTAAACCTAA 57.314 30.769 0.00 0.00 0.00 2.69
652 661 8.154856 AGACTAGCAATTTGTTGTCTAAACCTA 58.845 33.333 14.60 0.00 33.67 3.08
653 662 6.998673 AGACTAGCAATTTGTTGTCTAAACCT 59.001 34.615 14.60 0.00 33.67 3.50
654 663 7.203255 AGACTAGCAATTTGTTGTCTAAACC 57.797 36.000 14.60 0.00 33.67 3.27
655 664 8.958043 CAAAGACTAGCAATTTGTTGTCTAAAC 58.042 33.333 15.73 0.00 34.23 2.01
656 665 7.647715 GCAAAGACTAGCAATTTGTTGTCTAAA 59.352 33.333 15.73 0.00 36.52 1.85
657 666 7.138736 GCAAAGACTAGCAATTTGTTGTCTAA 58.861 34.615 15.73 0.00 36.52 2.10
658 667 6.262049 TGCAAAGACTAGCAATTTGTTGTCTA 59.738 34.615 15.73 2.91 37.90 2.59
659 668 5.067674 TGCAAAGACTAGCAATTTGTTGTCT 59.932 36.000 13.37 12.08 37.90 3.41
660 669 5.173854 GTGCAAAGACTAGCAATTTGTTGTC 59.826 40.000 13.37 4.76 43.20 3.18
661 670 5.043248 GTGCAAAGACTAGCAATTTGTTGT 58.957 37.500 13.37 0.00 43.20 3.32
662 671 5.042593 TGTGCAAAGACTAGCAATTTGTTG 58.957 37.500 13.37 0.00 43.20 3.33
663 672 5.261209 TGTGCAAAGACTAGCAATTTGTT 57.739 34.783 13.37 0.00 43.20 2.83
664 673 4.916983 TGTGCAAAGACTAGCAATTTGT 57.083 36.364 13.37 0.00 43.20 2.83
665 674 4.556135 CGATGTGCAAAGACTAGCAATTTG 59.444 41.667 4.27 9.43 43.20 2.32
673 682 4.377021 AGTGTTTCGATGTGCAAAGACTA 58.623 39.130 0.00 0.00 35.08 2.59
703 712 5.348997 GGATAATACTCGTTATGCTCCTTGC 59.651 44.000 0.00 0.00 43.25 4.01
704 713 6.455647 TGGATAATACTCGTTATGCTCCTTG 58.544 40.000 0.00 0.00 34.60 3.61
705 714 6.665992 TGGATAATACTCGTTATGCTCCTT 57.334 37.500 0.00 0.00 34.60 3.36
706 715 6.456501 GTTGGATAATACTCGTTATGCTCCT 58.543 40.000 0.00 0.00 34.60 3.69
707 716 5.638234 GGTTGGATAATACTCGTTATGCTCC 59.362 44.000 0.00 0.00 34.60 4.70
708 717 6.220930 TGGTTGGATAATACTCGTTATGCTC 58.779 40.000 0.00 0.00 34.60 4.26
710 719 6.854496 TTGGTTGGATAATACTCGTTATGC 57.146 37.500 0.00 0.00 34.24 3.14
711 720 8.221100 CGATTTGGTTGGATAATACTCGTTATG 58.779 37.037 0.00 0.00 0.00 1.90
712 721 7.095355 GCGATTTGGTTGGATAATACTCGTTAT 60.095 37.037 0.00 0.00 0.00 1.89
713 722 6.201425 GCGATTTGGTTGGATAATACTCGTTA 59.799 38.462 0.00 0.00 0.00 3.18
714 723 5.007332 GCGATTTGGTTGGATAATACTCGTT 59.993 40.000 0.00 0.00 0.00 3.85
715 724 4.510340 GCGATTTGGTTGGATAATACTCGT 59.490 41.667 0.00 0.00 0.00 4.18
716 725 4.084013 GGCGATTTGGTTGGATAATACTCG 60.084 45.833 0.00 0.00 0.00 4.18
717 726 4.819630 TGGCGATTTGGTTGGATAATACTC 59.180 41.667 0.00 0.00 0.00 2.59
718 727 4.787551 TGGCGATTTGGTTGGATAATACT 58.212 39.130 0.00 0.00 0.00 2.12
719 728 4.556699 GCTGGCGATTTGGTTGGATAATAC 60.557 45.833 0.00 0.00 0.00 1.89
720 729 3.568007 GCTGGCGATTTGGTTGGATAATA 59.432 43.478 0.00 0.00 0.00 0.98
722 731 1.748493 GCTGGCGATTTGGTTGGATAA 59.252 47.619 0.00 0.00 0.00 1.75
731 740 9.301153 AGTAAAATATTTAAAGCTGGCGATTTG 57.699 29.630 0.01 0.00 30.36 2.32
785 796 9.775854 AAGCGTCTAACAGAATAGTAGTATCTA 57.224 33.333 0.00 0.00 0.00 1.98
786 797 8.680039 AAGCGTCTAACAGAATAGTAGTATCT 57.320 34.615 0.00 0.00 0.00 1.98
787 798 9.733219 AAAAGCGTCTAACAGAATAGTAGTATC 57.267 33.333 0.00 0.00 0.00 2.24
790 801 9.918630 TTAAAAAGCGTCTAACAGAATAGTAGT 57.081 29.630 0.00 0.00 0.00 2.73
792 803 9.695526 TGTTAAAAAGCGTCTAACAGAATAGTA 57.304 29.630 4.03 0.00 32.11 1.82
793 804 8.493547 GTGTTAAAAAGCGTCTAACAGAATAGT 58.506 33.333 7.29 0.00 36.48 2.12
794 805 8.709646 AGTGTTAAAAAGCGTCTAACAGAATAG 58.290 33.333 7.29 0.00 36.48 1.73
795 806 8.597662 AGTGTTAAAAAGCGTCTAACAGAATA 57.402 30.769 7.29 0.00 36.48 1.75
796 807 7.492352 AGTGTTAAAAAGCGTCTAACAGAAT 57.508 32.000 7.29 0.00 36.48 2.40
797 808 6.913873 AGTGTTAAAAAGCGTCTAACAGAA 57.086 33.333 7.29 0.00 36.48 3.02
798 809 7.205297 ACTAGTGTTAAAAAGCGTCTAACAGA 58.795 34.615 0.00 0.93 36.48 3.41
799 810 7.404139 ACTAGTGTTAAAAAGCGTCTAACAG 57.596 36.000 0.00 1.49 36.48 3.16
839 850 6.660094 ACTCCCTCCGTCTCATATTATAAGAC 59.340 42.308 0.00 0.00 36.82 3.01
840 851 6.791371 ACTCCCTCCGTCTCATATTATAAGA 58.209 40.000 0.00 0.00 0.00 2.10
841 852 8.754991 ATACTCCCTCCGTCTCATATTATAAG 57.245 38.462 0.00 0.00 0.00 1.73
1216 1234 1.959085 CATGCCTGCAACGGAAACT 59.041 52.632 0.00 0.00 0.00 2.66
1357 1376 0.819259 TCAAGTGAACAGCCTGGTGC 60.819 55.000 0.00 0.00 41.71 5.01
1360 1379 2.082231 CAGATCAAGTGAACAGCCTGG 58.918 52.381 0.00 0.00 0.00 4.45
1408 1427 7.324178 AGCCCTACAATCGTATGAAGAATATC 58.676 38.462 0.00 0.00 0.00 1.63
1503 1525 0.105964 AGGTACTCACAACTTGCGCA 59.894 50.000 5.66 5.66 0.00 6.09
1527 1549 7.711772 TCACTTAAGAAGGACGAAATTGTGTTA 59.288 33.333 10.09 0.00 0.00 2.41
1552 1574 7.715265 TGATTTCACAAGAGTGTAGAGTTTC 57.285 36.000 0.00 0.00 46.01 2.78
1558 1580 8.032952 TGCTTAATGATTTCACAAGAGTGTAG 57.967 34.615 7.56 0.00 46.01 2.74
1643 1665 1.753073 CATGAGGCAAATCCCAGGTTC 59.247 52.381 0.00 0.00 34.51 3.62
1646 1668 2.121645 GCATGAGGCAAATCCCAGG 58.878 57.895 0.00 0.00 43.97 4.45
1656 1678 3.431486 GGCTATGTATCTAGGCATGAGGC 60.431 52.174 0.00 0.00 42.30 4.70
2036 2060 5.345741 GGACAAATCAATTGGAACATTCACG 59.654 40.000 5.42 0.00 43.66 4.35
2124 2463 8.589338 AGAGTAACACCAGCATCCTATATTAAG 58.411 37.037 0.00 0.00 0.00 1.85
2130 2469 6.077993 TCATAGAGTAACACCAGCATCCTAT 58.922 40.000 0.00 0.00 0.00 2.57
2632 3000 1.358103 GAAAACTTTAGGGGAGGCCCT 59.642 52.381 0.00 0.00 44.66 5.19
2836 3218 6.528537 TTTGGAGTGCATTTGTATTGCTAT 57.471 33.333 0.00 0.00 40.77 2.97
2886 3268 9.899226 GCAACTATTCTTTTTACAAGACAATCT 57.101 29.630 0.00 0.00 0.00 2.40
2903 3286 6.183360 ACGTAACAGTTATGCAGCAACTATTC 60.183 38.462 14.27 5.69 34.50 1.75
2920 3303 7.495055 AGGGGTGATAATAACTAACGTAACAG 58.505 38.462 0.00 0.00 0.00 3.16
2965 3349 0.746659 AAGTGCAGCTGTTTGTTCCC 59.253 50.000 16.64 0.00 0.00 3.97
3068 3455 7.325660 AGTTGTCGATTATCAAATTGCATCT 57.674 32.000 0.00 0.00 0.00 2.90
3080 3467 6.037786 TCCTGAGTGAAAGTTGTCGATTAT 57.962 37.500 0.00 0.00 0.00 1.28
3111 3505 3.369921 CCCTTCCAAGGCAACAGC 58.630 61.111 0.00 0.00 45.10 4.40
3143 3537 6.154706 GTCCTCTTGTTTATGGAGTTCCTAGA 59.845 42.308 0.00 0.00 36.82 2.43
3199 3624 8.697292 AGAGTCTGGTCTAGAATTATTTACCAC 58.303 37.037 0.00 0.00 37.12 4.16
3205 3630 9.883142 CTTTGAAGAGTCTGGTCTAGAATTATT 57.117 33.333 0.00 0.00 37.12 1.40
3212 3637 7.382110 TGAATTCTTTGAAGAGTCTGGTCTAG 58.618 38.462 7.05 0.00 36.22 2.43
3329 3756 0.251354 TGCCAGGAACAGAGCAGATC 59.749 55.000 0.00 0.00 0.00 2.75
3557 3986 5.634118 TGAACTCTCAACAAATTCCTGGAT 58.366 37.500 0.00 0.00 0.00 3.41
3564 3993 7.043565 AGTGCATTTTGAACTCTCAACAAATT 58.956 30.769 0.00 0.00 41.34 1.82
3733 4163 6.034898 GTCAAGGCATCGACCAATTTTAATTG 59.965 38.462 7.98 7.98 44.12 2.32
3797 4252 3.668447 GCACTCTTCTGGAGAATCAACA 58.332 45.455 0.00 0.00 44.45 3.33
3818 4273 9.285770 TGCTAATACTTACATATTATCTTCGCG 57.714 33.333 0.00 0.00 0.00 5.87
3842 4297 5.065602 TGCAGAAGATTCACATGTCTAATGC 59.934 40.000 7.51 9.88 36.95 3.56
4041 4615 4.548451 TTCTGGCTGGAGCATCATATAG 57.452 45.455 0.20 0.00 44.36 1.31
4172 4749 5.713025 TCTCAATTAAGGCTGCAAAACATC 58.287 37.500 0.50 0.00 0.00 3.06
4274 4851 4.994744 GCATGTTGCTTGGGAACC 57.005 55.556 0.00 0.00 45.91 3.62
4480 5066 4.151867 GGGTGATCGCGTTTCCTATTATTC 59.848 45.833 5.77 0.00 0.00 1.75
4481 5067 4.062991 GGGTGATCGCGTTTCCTATTATT 58.937 43.478 5.77 0.00 0.00 1.40
4514 5100 5.048921 TCCAGTTAGTACTTTCACTCTGTCG 60.049 44.000 0.00 0.00 30.26 4.35
4579 5165 7.339466 GCAATATCCCTAAAATATACCACAGGG 59.661 40.741 0.00 0.00 43.52 4.45
4671 5258 7.054124 TGAGAATGGTAGAAAAGACAAACTGT 58.946 34.615 0.00 0.00 0.00 3.55
4704 5291 9.382275 ACAAGGTCCAATTCAATATTTAATTGC 57.618 29.630 21.84 13.26 40.27 3.56
4752 5339 2.620367 GGGTGAGAATTGTATGCCCACA 60.620 50.000 0.00 0.00 34.95 4.17
4770 5357 1.302271 GGACGCGAAAAGAAGGGGT 60.302 57.895 15.93 0.00 0.00 4.95
4777 5364 0.512952 CCACAAGAGGACGCGAAAAG 59.487 55.000 15.93 0.00 0.00 2.27
4785 5373 3.764237 TGTAGGAAACCACAAGAGGAC 57.236 47.619 0.00 0.00 0.00 3.85
4828 5416 8.969260 TCTTCACAAGTGCAATATCTGAATAT 57.031 30.769 0.00 0.00 0.00 1.28
4949 5537 8.792830 TGGTAACTCATAGAACCACCTATAAT 57.207 34.615 0.00 0.00 37.09 1.28
4953 5541 6.441222 AGATGGTAACTCATAGAACCACCTA 58.559 40.000 7.67 0.00 44.40 3.08
5058 5646 1.123861 TGAGCAGACTGGAGCTTGGT 61.124 55.000 4.26 0.00 42.04 3.67
5065 5653 2.027192 GGTTTGGTATGAGCAGACTGGA 60.027 50.000 4.26 0.00 32.19 3.86
5079 5667 2.765689 TGGAACATGGAAGGTTTGGT 57.234 45.000 0.00 0.00 43.10 3.67
5096 5684 1.284785 TCCAGTGGAATAAGGGCTTGG 59.715 52.381 10.20 0.00 0.00 3.61
5097 5685 2.806945 TCCAGTGGAATAAGGGCTTG 57.193 50.000 10.20 0.00 0.00 4.01
5098 5686 4.416848 ACATATCCAGTGGAATAAGGGCTT 59.583 41.667 17.71 0.00 34.34 4.35
5099 5687 3.983410 ACATATCCAGTGGAATAAGGGCT 59.017 43.478 17.71 0.00 34.34 5.19
5100 5688 4.373156 ACATATCCAGTGGAATAAGGGC 57.627 45.455 17.71 0.00 34.34 5.19
5142 5730 9.342308 AGATTCAAGTTGTTTTGAGACATAAGA 57.658 29.630 2.11 0.00 38.25 2.10
5151 5739 8.546597 TCATATCGAGATTCAAGTTGTTTTGA 57.453 30.769 2.11 0.00 35.38 2.69
5174 5762 5.843673 TGCATTTGGAAACTGTACTTTCA 57.156 34.783 9.15 0.00 32.57 2.69
5189 5777 3.460103 AGTTTCTGGCTTGTTGCATTTG 58.540 40.909 0.00 0.00 45.15 2.32
5319 5911 5.361285 CCTAGTAGTACAGATCAGGCAAGTT 59.639 44.000 2.52 0.00 0.00 2.66
5333 5925 7.699812 CGTGGTTTCTCAATAACCTAGTAGTAC 59.300 40.741 0.00 0.00 44.32 2.73
5335 5927 6.628185 CGTGGTTTCTCAATAACCTAGTAGT 58.372 40.000 0.00 0.00 44.32 2.73
5401 6008 8.793592 AGGTCCAAAACAGTCAGATTTTATTAC 58.206 33.333 0.00 0.00 0.00 1.89
5550 6170 2.286831 CGCAAGCCAGATGATGATTCAC 60.287 50.000 0.00 0.00 33.85 3.18
5730 6353 4.096382 CCTAAATGGAAGTTTGCACGCTAT 59.904 41.667 0.00 0.00 38.35 2.97
5736 6359 6.926630 ATAAACCCTAAATGGAAGTTTGCA 57.073 33.333 0.00 0.00 38.35 4.08
5739 6362 7.953493 TGGAGAATAAACCCTAAATGGAAGTTT 59.047 33.333 0.00 0.00 38.35 2.66
5740 6363 7.396339 GTGGAGAATAAACCCTAAATGGAAGTT 59.604 37.037 0.00 0.00 38.35 2.66
5743 6366 6.192044 GGTGGAGAATAAACCCTAAATGGAA 58.808 40.000 0.00 0.00 38.35 3.53
5870 6523 8.955061 TGTTCGCAAAAATTGAAAAATGAAAA 57.045 23.077 0.00 0.00 0.00 2.29
5901 6555 7.608755 CAACTTCGAAAAATGTTCACGATTTT 58.391 30.769 0.00 0.00 35.06 1.82
5906 6560 3.788694 TGCAACTTCGAAAAATGTTCACG 59.211 39.130 0.00 0.00 0.00 4.35
5907 6561 5.694674 TTGCAACTTCGAAAAATGTTCAC 57.305 34.783 0.00 0.00 0.00 3.18
5913 6567 7.538303 AGAAATGTTTGCAACTTCGAAAAAT 57.462 28.000 0.00 0.00 0.00 1.82
5919 6573 6.760127 TGAAAAAGAAATGTTTGCAACTTCG 58.240 32.000 0.00 0.00 0.00 3.79
5920 6574 8.947304 TTTGAAAAAGAAATGTTTGCAACTTC 57.053 26.923 0.00 0.03 34.02 3.01
5922 6576 8.728833 TGATTTGAAAAAGAAATGTTTGCAACT 58.271 25.926 0.00 0.00 34.02 3.16
5923 6577 8.892887 TGATTTGAAAAAGAAATGTTTGCAAC 57.107 26.923 0.00 0.00 34.02 4.17
5925 6579 8.890718 TCATGATTTGAAAAAGAAATGTTTGCA 58.109 25.926 0.00 0.00 0.00 4.08
5926 6580 9.719279 TTCATGATTTGAAAAAGAAATGTTTGC 57.281 25.926 0.00 0.00 41.38 3.68
6059 6713 9.537192 AATTCGATAAATGTTCATGCATTTCAT 57.463 25.926 12.74 0.00 44.85 2.57
6060 6714 8.929827 AATTCGATAAATGTTCATGCATTTCA 57.070 26.923 12.74 0.00 44.85 2.69
6061 6715 9.022915 TGAATTCGATAAATGTTCATGCATTTC 57.977 29.630 12.74 0.00 44.85 2.17
6062 6716 8.929827 TGAATTCGATAAATGTTCATGCATTT 57.070 26.923 13.57 13.57 46.79 2.32
6063 6717 9.537192 AATGAATTCGATAAATGTTCATGCATT 57.463 25.926 0.00 0.00 38.93 3.56
6179 6833 8.533965 CGCGAATTCAAATAATGTTCATGATTT 58.466 29.630 0.00 3.10 0.00 2.17
6180 6834 7.914871 TCGCGAATTCAAATAATGTTCATGATT 59.085 29.630 6.20 0.00 0.00 2.57
6181 6835 7.416817 TCGCGAATTCAAATAATGTTCATGAT 58.583 30.769 6.20 0.00 0.00 2.45
6182 6836 6.780127 TCGCGAATTCAAATAATGTTCATGA 58.220 32.000 6.20 0.00 0.00 3.07
6183 6837 7.435203 TTCGCGAATTCAAATAATGTTCATG 57.565 32.000 19.38 0.00 0.00 3.07
6184 6838 8.633075 ATTTCGCGAATTCAAATAATGTTCAT 57.367 26.923 24.05 3.97 0.00 2.57
6185 6839 8.459521 AATTTCGCGAATTCAAATAATGTTCA 57.540 26.923 24.05 1.35 32.49 3.18
6186 6840 9.186938 CAAATTTCGCGAATTCAAATAATGTTC 57.813 29.630 24.05 0.00 36.96 3.18
6187 6841 8.167985 CCAAATTTCGCGAATTCAAATAATGTT 58.832 29.630 24.05 4.20 36.96 2.71
6188 6842 7.330700 ACCAAATTTCGCGAATTCAAATAATGT 59.669 29.630 24.05 2.32 36.96 2.71
6189 6843 7.674564 ACCAAATTTCGCGAATTCAAATAATG 58.325 30.769 24.05 13.97 36.96 1.90
6190 6844 7.826260 ACCAAATTTCGCGAATTCAAATAAT 57.174 28.000 24.05 7.51 36.96 1.28
6191 6845 7.382488 TGAACCAAATTTCGCGAATTCAAATAA 59.618 29.630 24.05 5.07 36.96 1.40
6192 6846 6.863645 TGAACCAAATTTCGCGAATTCAAATA 59.136 30.769 24.05 5.92 36.96 1.40
6193 6847 5.694006 TGAACCAAATTTCGCGAATTCAAAT 59.306 32.000 24.05 9.91 36.96 2.32
6194 6848 5.043903 TGAACCAAATTTCGCGAATTCAAA 58.956 33.333 24.05 7.61 36.96 2.69
6195 6849 4.611943 TGAACCAAATTTCGCGAATTCAA 58.388 34.783 24.05 8.04 36.96 2.69
6196 6850 4.230314 TGAACCAAATTTCGCGAATTCA 57.770 36.364 24.05 23.13 36.96 2.57
6197 6851 4.679654 ACTTGAACCAAATTTCGCGAATTC 59.320 37.500 24.05 20.88 36.96 2.17
6198 6852 4.616953 ACTTGAACCAAATTTCGCGAATT 58.383 34.783 24.05 16.70 39.63 2.17
6199 6853 4.237349 ACTTGAACCAAATTTCGCGAAT 57.763 36.364 24.05 5.62 0.00 3.34
6200 6854 3.701532 ACTTGAACCAAATTTCGCGAA 57.298 38.095 19.38 19.38 0.00 4.70
6201 6855 3.065510 TGAACTTGAACCAAATTTCGCGA 59.934 39.130 3.71 3.71 0.00 5.87
6202 6856 3.367607 TGAACTTGAACCAAATTTCGCG 58.632 40.909 0.00 0.00 0.00 5.87
6203 6857 4.981674 TCATGAACTTGAACCAAATTTCGC 59.018 37.500 0.00 0.00 0.00 4.70
6204 6858 6.866347 GTTCATGAACTTGAACCAAATTTCG 58.134 36.000 27.66 0.00 46.30 3.46
6259 6913 8.984891 TCATGATTTTAAAAGAATGTTCGCAT 57.015 26.923 18.18 5.51 40.03 4.73
6260 6914 8.984891 ATCATGATTTTAAAAGAATGTTCGCA 57.015 26.923 18.18 6.20 0.00 5.10
6327 6981 6.841119 TCAGAAAACAACGTCCATGATTATG 58.159 36.000 0.00 0.00 0.00 1.90
6328 6982 7.447374 TTCAGAAAACAACGTCCATGATTAT 57.553 32.000 0.00 0.00 0.00 1.28
6329 6983 6.869315 TTCAGAAAACAACGTCCATGATTA 57.131 33.333 0.00 0.00 0.00 1.75
6330 6984 5.766150 TTCAGAAAACAACGTCCATGATT 57.234 34.783 0.00 0.00 0.00 2.57
6331 6985 5.964958 ATTCAGAAAACAACGTCCATGAT 57.035 34.783 0.00 0.00 0.00 2.45
6332 6986 5.298026 TGAATTCAGAAAACAACGTCCATGA 59.702 36.000 3.38 0.00 0.00 3.07
6333 6987 5.518812 TGAATTCAGAAAACAACGTCCATG 58.481 37.500 3.38 0.00 0.00 3.66
6334 6988 5.766150 TGAATTCAGAAAACAACGTCCAT 57.234 34.783 3.38 0.00 0.00 3.41
6335 6989 5.355630 TCTTGAATTCAGAAAACAACGTCCA 59.644 36.000 8.41 0.00 0.00 4.02
6336 6990 5.816919 TCTTGAATTCAGAAAACAACGTCC 58.183 37.500 8.41 0.00 0.00 4.79
6337 6991 7.132213 TGATCTTGAATTCAGAAAACAACGTC 58.868 34.615 8.41 2.28 0.00 4.34
6338 6992 7.026631 TGATCTTGAATTCAGAAAACAACGT 57.973 32.000 8.41 0.00 0.00 3.99
6339 6993 8.511465 AATGATCTTGAATTCAGAAAACAACG 57.489 30.769 8.41 0.00 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.