Multiple sequence alignment - TraesCS4D01G295800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G295800 chr4D 100.000 3169 0 0 1 3169 465602893 465599725 0.000000e+00 5853.0
1 TraesCS4D01G295800 chr4D 89.474 152 9 3 16 160 46618822 46618671 5.400000e-43 185.0
2 TraesCS4D01G295800 chr4D 90.345 145 8 4 16 160 310390380 310390518 5.400000e-43 185.0
3 TraesCS4D01G295800 chr4D 80.090 221 40 2 2511 2729 5565282 5565064 9.100000e-36 161.0
4 TraesCS4D01G295800 chr4D 91.667 48 4 0 1431 1478 465606298 465606345 2.040000e-07 67.6
5 TraesCS4D01G295800 chr4B 88.915 1732 73 41 330 1987 582554434 582552748 0.000000e+00 2025.0
6 TraesCS4D01G295800 chr4B 84.776 670 87 10 2511 3169 582552364 582551699 0.000000e+00 658.0
7 TraesCS4D01G295800 chr4B 90.476 231 16 4 2247 2473 582552597 582552369 1.850000e-77 300.0
8 TraesCS4D01G295800 chr4B 83.251 203 30 4 2533 2733 545012047 545011847 1.940000e-42 183.0
9 TraesCS4D01G295800 chr4B 88.235 85 6 3 192 274 582554767 582554685 7.230000e-17 99.0
10 TraesCS4D01G295800 chr4B 100.000 29 0 0 163 191 381392484 381392512 2.000000e-03 54.7
11 TraesCS4D01G295800 chr4A 80.661 1784 153 88 315 1967 4847245 4848967 0.000000e+00 1206.0
12 TraesCS4D01G295800 chr7D 85.135 222 31 1 2511 2730 133328841 133329062 3.180000e-55 226.0
13 TraesCS4D01G295800 chr7D 94.444 36 0 2 163 198 225842438 225842471 2.000000e-03 54.7
14 TraesCS4D01G295800 chr2D 90.345 145 11 1 16 160 379706627 379706486 1.500000e-43 187.0
15 TraesCS4D01G295800 chr6D 93.023 129 6 2 16 141 463539566 463539694 5.400000e-43 185.0
16 TraesCS4D01G295800 chr3D 89.474 152 9 3 16 160 18734499 18734348 5.400000e-43 185.0
17 TraesCS4D01G295800 chr3D 88.514 148 11 3 16 160 5089932 5089788 1.170000e-39 174.0
18 TraesCS4D01G295800 chr1D 89.474 152 9 3 16 160 26650691 26650842 5.400000e-43 185.0
19 TraesCS4D01G295800 chr1D 87.500 152 11 4 16 160 399639 399489 5.440000e-38 169.0
20 TraesCS4D01G295800 chr2A 83.756 197 25 5 2534 2729 701014895 701014705 2.510000e-41 180.0
21 TraesCS4D01G295800 chr2A 83.696 184 26 3 2549 2729 565080677 565080495 1.510000e-38 171.0
22 TraesCS4D01G295800 chr5D 88.000 150 10 4 16 160 511808463 511808609 1.510000e-38 171.0
23 TraesCS4D01G295800 chr5D 100.000 29 0 0 163 191 336454191 336454219 2.000000e-03 54.7
24 TraesCS4D01G295800 chr5D 100.000 29 0 0 163 191 370368902 370368930 2.000000e-03 54.7
25 TraesCS4D01G295800 chr5D 100.000 29 0 0 163 191 552528851 552528879 2.000000e-03 54.7
26 TraesCS4D01G295800 chr1A 80.804 224 37 5 2511 2729 347945714 347945936 1.510000e-38 171.0
27 TraesCS4D01G295800 chr1A 81.313 198 35 2 2533 2729 520861030 520860834 3.270000e-35 159.0
28 TraesCS4D01G295800 chr7A 82.323 198 30 5 2533 2729 501033337 501033530 1.960000e-37 167.0
29 TraesCS4D01G295800 chr6A 97.059 34 1 0 2907 2940 5298752 5298719 1.230000e-04 58.4
30 TraesCS4D01G295800 chrUn 94.444 36 0 2 163 198 114975193 114975160 2.000000e-03 54.7
31 TraesCS4D01G295800 chr5A 94.444 36 0 2 163 198 295630860 295630827 2.000000e-03 54.7
32 TraesCS4D01G295800 chr3A 94.444 36 0 2 163 198 638498123 638498090 2.000000e-03 54.7
33 TraesCS4D01G295800 chr3A 100.000 29 0 0 163 191 734629925 734629953 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G295800 chr4D 465599725 465602893 3168 True 5853.0 5853 100.0000 1 3169 1 chr4D.!!$R3 3168
1 TraesCS4D01G295800 chr4B 582551699 582554767 3068 True 770.5 2025 88.1005 192 3169 4 chr4B.!!$R2 2977
2 TraesCS4D01G295800 chr4A 4847245 4848967 1722 False 1206.0 1206 80.6610 315 1967 1 chr4A.!!$F1 1652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.043637 AGGTTTAGTCCCATCCCGGA 59.956 55.0 0.73 0.00 36.56 5.14 F
297 299 0.171231 TCATGAGGCTTCACGAGTCG 59.829 55.0 11.85 11.85 35.83 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1673 2012 0.316278 CGACTGAGCTCGATGTACCG 60.316 60.000 9.64 5.34 35.58 4.02 R
2206 2583 1.005097 TGGAGAATTGTCAGCCATGCT 59.995 47.619 4.83 0.00 40.77 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.976540 ATATGGCACTAGGTTTAGTCCC 57.023 45.455 0.00 0.00 38.10 4.46
25 26 2.032965 TGGCACTAGGTTTAGTCCCA 57.967 50.000 0.00 0.00 43.90 4.37
26 27 2.557869 TGGCACTAGGTTTAGTCCCAT 58.442 47.619 0.00 0.00 41.77 4.00
27 28 2.504175 TGGCACTAGGTTTAGTCCCATC 59.496 50.000 0.00 0.00 41.77 3.51
28 29 2.158798 GGCACTAGGTTTAGTCCCATCC 60.159 54.545 0.00 0.00 37.62 3.51
29 30 2.158798 GCACTAGGTTTAGTCCCATCCC 60.159 54.545 0.00 0.00 38.05 3.85
30 31 2.102588 CACTAGGTTTAGTCCCATCCCG 59.897 54.545 0.00 0.00 38.05 5.14
31 32 1.692519 CTAGGTTTAGTCCCATCCCGG 59.307 57.143 0.00 0.00 0.00 5.73
32 33 0.043637 AGGTTTAGTCCCATCCCGGA 59.956 55.000 0.73 0.00 36.56 5.14
33 34 0.913924 GGTTTAGTCCCATCCCGGAA 59.086 55.000 0.73 0.00 36.56 4.30
34 35 1.282738 GGTTTAGTCCCATCCCGGAAA 59.717 52.381 0.73 0.00 36.56 3.13
35 36 2.092049 GGTTTAGTCCCATCCCGGAAAT 60.092 50.000 0.73 0.00 36.56 2.17
36 37 2.949644 GTTTAGTCCCATCCCGGAAATG 59.050 50.000 0.73 6.40 36.56 2.32
37 38 1.136828 TAGTCCCATCCCGGAAATGG 58.863 55.000 22.44 22.44 42.84 3.16
38 39 0.623324 AGTCCCATCCCGGAAATGGA 60.623 55.000 28.02 15.60 45.51 3.41
39 40 0.257616 GTCCCATCCCGGAAATGGAA 59.742 55.000 28.02 12.81 45.51 3.53
40 41 0.550914 TCCCATCCCGGAAATGGAAG 59.449 55.000 28.02 16.88 45.51 3.46
41 42 0.550914 CCCATCCCGGAAATGGAAGA 59.449 55.000 28.02 6.35 45.51 2.87
42 43 1.064017 CCCATCCCGGAAATGGAAGAA 60.064 52.381 28.02 0.00 45.51 2.52
43 44 2.301346 CCATCCCGGAAATGGAAGAAG 58.699 52.381 24.17 0.00 45.51 2.85
44 45 2.092429 CCATCCCGGAAATGGAAGAAGA 60.092 50.000 24.17 0.90 45.51 2.87
45 46 3.209410 CATCCCGGAAATGGAAGAAGAG 58.791 50.000 0.73 0.00 35.03 2.85
46 47 2.266279 TCCCGGAAATGGAAGAAGAGT 58.734 47.619 0.73 0.00 0.00 3.24
47 48 2.642807 TCCCGGAAATGGAAGAAGAGTT 59.357 45.455 0.73 0.00 0.00 3.01
48 49 2.749621 CCCGGAAATGGAAGAAGAGTTG 59.250 50.000 0.73 0.00 0.00 3.16
49 50 2.749621 CCGGAAATGGAAGAAGAGTTGG 59.250 50.000 0.00 0.00 0.00 3.77
50 51 3.559171 CCGGAAATGGAAGAAGAGTTGGA 60.559 47.826 0.00 0.00 0.00 3.53
51 52 3.437049 CGGAAATGGAAGAAGAGTTGGAC 59.563 47.826 0.00 0.00 0.00 4.02
52 53 3.759086 GGAAATGGAAGAAGAGTTGGACC 59.241 47.826 0.00 0.00 0.00 4.46
53 54 4.507512 GGAAATGGAAGAAGAGTTGGACCT 60.508 45.833 0.00 0.00 0.00 3.85
54 55 3.990959 ATGGAAGAAGAGTTGGACCTC 57.009 47.619 0.00 0.00 0.00 3.85
55 56 1.978580 TGGAAGAAGAGTTGGACCTCC 59.021 52.381 0.00 0.00 31.53 4.30
56 57 2.261729 GGAAGAAGAGTTGGACCTCCT 58.738 52.381 0.00 0.00 36.82 3.69
57 58 2.640332 GGAAGAAGAGTTGGACCTCCTT 59.360 50.000 0.00 0.00 36.82 3.36
58 59 3.838903 GGAAGAAGAGTTGGACCTCCTTA 59.161 47.826 0.00 0.00 36.82 2.69
59 60 4.471747 GGAAGAAGAGTTGGACCTCCTTAT 59.528 45.833 0.00 0.00 36.82 1.73
60 61 5.661759 GGAAGAAGAGTTGGACCTCCTTATA 59.338 44.000 0.00 0.00 36.82 0.98
61 62 6.156429 GGAAGAAGAGTTGGACCTCCTTATAA 59.844 42.308 0.00 0.00 36.82 0.98
62 63 6.800072 AGAAGAGTTGGACCTCCTTATAAG 57.200 41.667 5.43 5.43 36.82 1.73
63 64 6.503944 AGAAGAGTTGGACCTCCTTATAAGA 58.496 40.000 14.28 0.00 36.82 2.10
64 65 6.609616 AGAAGAGTTGGACCTCCTTATAAGAG 59.390 42.308 14.28 9.03 36.82 2.85
65 66 5.844601 AGAGTTGGACCTCCTTATAAGAGT 58.155 41.667 14.28 8.09 36.82 3.24
66 67 6.265304 AGAGTTGGACCTCCTTATAAGAGTT 58.735 40.000 14.28 0.00 36.82 3.01
67 68 6.731448 AGAGTTGGACCTCCTTATAAGAGTTT 59.269 38.462 14.28 0.00 36.82 2.66
68 69 6.948589 AGTTGGACCTCCTTATAAGAGTTTC 58.051 40.000 14.28 5.08 36.82 2.78
69 70 6.731448 AGTTGGACCTCCTTATAAGAGTTTCT 59.269 38.462 14.28 3.93 36.82 2.52
70 71 6.793505 TGGACCTCCTTATAAGAGTTTCTC 57.206 41.667 14.28 1.16 36.82 2.87
71 72 6.503944 TGGACCTCCTTATAAGAGTTTCTCT 58.496 40.000 14.28 0.00 38.59 3.10
72 73 6.960542 TGGACCTCCTTATAAGAGTTTCTCTT 59.039 38.462 14.28 14.89 43.75 2.85
73 74 7.458170 TGGACCTCCTTATAAGAGTTTCTCTTT 59.542 37.037 14.28 7.88 41.21 2.52
87 88 9.507329 AGAGTTTCTCTTTTACATGCTATTGAA 57.493 29.630 0.00 0.00 37.60 2.69
88 89 9.766277 GAGTTTCTCTTTTACATGCTATTGAAG 57.234 33.333 0.00 0.00 0.00 3.02
104 105 7.760131 CTATTGAAGCTTGAGAAGAGAAGAG 57.240 40.000 2.10 0.00 0.00 2.85
105 106 4.533919 TGAAGCTTGAGAAGAGAAGAGG 57.466 45.455 2.10 0.00 0.00 3.69
106 107 3.261580 GAAGCTTGAGAAGAGAAGAGGC 58.738 50.000 2.10 0.00 0.00 4.70
107 108 1.554617 AGCTTGAGAAGAGAAGAGGCC 59.445 52.381 0.00 0.00 0.00 5.19
108 109 1.406751 GCTTGAGAAGAGAAGAGGCCC 60.407 57.143 0.00 0.00 0.00 5.80
109 110 2.187100 CTTGAGAAGAGAAGAGGCCCT 58.813 52.381 0.00 0.00 0.00 5.19
110 111 1.859302 TGAGAAGAGAAGAGGCCCTC 58.141 55.000 1.26 1.26 0.00 4.30
111 112 0.744281 GAGAAGAGAAGAGGCCCTCG 59.256 60.000 4.80 0.00 35.36 4.63
112 113 1.142965 GAAGAGAAGAGGCCCTCGC 59.857 63.158 4.80 1.57 35.36 5.03
113 114 2.621371 GAAGAGAAGAGGCCCTCGCG 62.621 65.000 4.80 0.00 35.36 5.87
114 115 4.882396 GAGAAGAGGCCCTCGCGC 62.882 72.222 4.80 0.00 35.36 6.86
123 124 4.504916 CCCTCGCGCACTCCTCTG 62.505 72.222 8.75 0.00 0.00 3.35
150 151 4.021650 GCGTCGCGGGATTATTGA 57.978 55.556 6.13 0.00 0.00 2.57
151 152 1.853319 GCGTCGCGGGATTATTGAG 59.147 57.895 6.13 0.00 0.00 3.02
152 153 1.853319 CGTCGCGGGATTATTGAGC 59.147 57.895 6.13 0.00 0.00 4.26
153 154 1.557443 CGTCGCGGGATTATTGAGCC 61.557 60.000 6.13 0.00 0.00 4.70
154 155 1.300620 TCGCGGGATTATTGAGCCG 60.301 57.895 6.13 0.00 33.43 5.52
155 156 1.300620 CGCGGGATTATTGAGCCGA 60.301 57.895 0.00 0.00 33.43 5.54
156 157 1.284982 CGCGGGATTATTGAGCCGAG 61.285 60.000 0.00 0.00 33.43 4.63
157 158 1.569479 GCGGGATTATTGAGCCGAGC 61.569 60.000 0.00 0.00 33.43 5.03
158 159 0.951040 CGGGATTATTGAGCCGAGCC 60.951 60.000 0.00 0.00 33.43 4.70
159 160 0.951040 GGGATTATTGAGCCGAGCCG 60.951 60.000 0.00 0.00 33.43 5.52
175 176 3.203412 CGGAGGTCGACGGGAGAG 61.203 72.222 9.92 0.00 42.43 3.20
176 177 3.519930 GGAGGTCGACGGGAGAGC 61.520 72.222 9.92 0.00 36.46 4.09
177 178 2.750637 GAGGTCGACGGGAGAGCA 60.751 66.667 9.92 0.00 38.46 4.26
178 179 2.752238 AGGTCGACGGGAGAGCAG 60.752 66.667 9.92 0.00 38.46 4.24
179 180 3.827898 GGTCGACGGGAGAGCAGG 61.828 72.222 9.92 0.00 36.27 4.85
180 181 3.063084 GTCGACGGGAGAGCAGGT 61.063 66.667 0.00 0.00 0.00 4.00
181 182 2.750637 TCGACGGGAGAGCAGGTC 60.751 66.667 0.00 0.00 0.00 3.85
182 183 2.752238 CGACGGGAGAGCAGGTCT 60.752 66.667 0.40 0.40 38.71 3.85
192 193 1.802069 GAGCAGGTCTCTGAAACCAC 58.198 55.000 2.51 0.00 43.49 4.16
193 194 0.398318 AGCAGGTCTCTGAAACCACC 59.602 55.000 2.51 0.00 43.49 4.61
194 195 0.398318 GCAGGTCTCTGAAACCACCT 59.602 55.000 2.51 0.00 43.49 4.00
196 197 0.398318 AGGTCTCTGAAACCACCTGC 59.602 55.000 2.51 0.00 37.88 4.85
223 224 0.600255 GGCTTCGGCTACATGCGTAT 60.600 55.000 0.00 0.00 44.05 3.06
274 276 4.530875 AGCTCCATGAGTATTTTTGAGGG 58.469 43.478 0.00 0.00 31.39 4.30
275 277 4.228210 AGCTCCATGAGTATTTTTGAGGGA 59.772 41.667 0.00 0.00 31.39 4.20
276 278 4.578105 GCTCCATGAGTATTTTTGAGGGAG 59.422 45.833 0.00 0.00 41.73 4.30
277 279 5.749462 CTCCATGAGTATTTTTGAGGGAGT 58.251 41.667 0.00 0.00 35.74 3.85
278 280 6.139679 TCCATGAGTATTTTTGAGGGAGTT 57.860 37.500 0.00 0.00 0.00 3.01
279 281 6.180472 TCCATGAGTATTTTTGAGGGAGTTC 58.820 40.000 0.00 0.00 0.00 3.01
280 282 5.945784 CCATGAGTATTTTTGAGGGAGTTCA 59.054 40.000 0.00 0.00 0.00 3.18
281 283 6.604795 CCATGAGTATTTTTGAGGGAGTTCAT 59.395 38.462 0.00 0.00 0.00 2.57
282 284 7.415989 CCATGAGTATTTTTGAGGGAGTTCATG 60.416 40.741 0.00 0.00 38.43 3.07
283 285 6.778821 TGAGTATTTTTGAGGGAGTTCATGA 58.221 36.000 0.00 0.00 0.00 3.07
284 286 6.881065 TGAGTATTTTTGAGGGAGTTCATGAG 59.119 38.462 0.00 0.00 0.00 2.90
285 287 6.183347 AGTATTTTTGAGGGAGTTCATGAGG 58.817 40.000 0.00 0.00 0.00 3.86
286 288 2.496899 TTTGAGGGAGTTCATGAGGC 57.503 50.000 0.00 0.00 0.00 4.70
287 289 1.661463 TTGAGGGAGTTCATGAGGCT 58.339 50.000 0.00 0.00 0.00 4.58
288 290 1.661463 TGAGGGAGTTCATGAGGCTT 58.339 50.000 0.00 0.00 0.00 4.35
289 291 1.556911 TGAGGGAGTTCATGAGGCTTC 59.443 52.381 0.00 0.00 0.00 3.86
290 292 1.556911 GAGGGAGTTCATGAGGCTTCA 59.443 52.381 0.00 0.00 37.81 3.02
291 293 1.280421 AGGGAGTTCATGAGGCTTCAC 59.720 52.381 0.00 0.00 35.83 3.18
292 294 1.363744 GGAGTTCATGAGGCTTCACG 58.636 55.000 0.00 0.00 35.83 4.35
293 295 1.066858 GGAGTTCATGAGGCTTCACGA 60.067 52.381 0.00 0.00 35.83 4.35
294 296 2.266554 GAGTTCATGAGGCTTCACGAG 58.733 52.381 0.00 0.00 35.83 4.18
295 297 1.620819 AGTTCATGAGGCTTCACGAGT 59.379 47.619 0.00 0.00 35.83 4.18
296 298 1.996191 GTTCATGAGGCTTCACGAGTC 59.004 52.381 0.00 0.00 35.83 3.36
297 299 0.171231 TCATGAGGCTTCACGAGTCG 59.829 55.000 11.85 11.85 35.83 4.18
298 300 0.171231 CATGAGGCTTCACGAGTCGA 59.829 55.000 21.50 0.00 35.83 4.20
299 301 1.107114 ATGAGGCTTCACGAGTCGAT 58.893 50.000 21.50 0.03 35.83 3.59
300 302 0.888619 TGAGGCTTCACGAGTCGATT 59.111 50.000 21.50 0.00 34.31 3.34
301 303 1.135373 TGAGGCTTCACGAGTCGATTC 60.135 52.381 21.50 0.00 34.31 2.52
302 304 0.173708 AGGCTTCACGAGTCGATTCC 59.826 55.000 21.50 12.00 34.31 3.01
303 305 0.173708 GGCTTCACGAGTCGATTCCT 59.826 55.000 21.50 0.00 0.00 3.36
304 306 1.404391 GGCTTCACGAGTCGATTCCTA 59.596 52.381 21.50 0.00 0.00 2.94
305 307 2.541999 GGCTTCACGAGTCGATTCCTAG 60.542 54.545 21.50 8.27 0.00 3.02
306 308 2.541999 GCTTCACGAGTCGATTCCTAGG 60.542 54.545 21.50 0.82 0.00 3.02
307 309 2.704464 TCACGAGTCGATTCCTAGGA 57.296 50.000 21.50 7.62 0.00 2.94
308 310 3.210232 TCACGAGTCGATTCCTAGGAT 57.790 47.619 21.50 2.63 0.00 3.24
309 311 2.879026 TCACGAGTCGATTCCTAGGATG 59.121 50.000 21.50 4.53 0.00 3.51
310 312 2.030717 CACGAGTCGATTCCTAGGATGG 60.031 54.545 21.50 5.09 0.00 3.51
311 313 1.542030 CGAGTCGATTCCTAGGATGGG 59.458 57.143 13.57 4.71 38.63 4.00
369 566 0.409092 TCATGTGGCTCCCATGGTTT 59.591 50.000 11.73 0.00 40.07 3.27
446 643 3.573772 GAAAAACAGCGGGGCAGGC 62.574 63.158 0.00 0.00 0.00 4.85
506 704 2.216046 GATCTGAGCATTTCCATCGCA 58.784 47.619 0.00 0.00 0.00 5.10
513 711 1.605500 CATTTCCATCGCACACAACG 58.394 50.000 0.00 0.00 0.00 4.10
531 729 0.314259 CGCACGTGATACATTCGCAC 60.314 55.000 22.23 0.00 34.34 5.34
538 736 3.483574 CGTGATACATTCGCACAAGGAAC 60.484 47.826 0.00 0.00 34.34 3.62
542 740 0.893270 CATTCGCACAAGGAACCCCA 60.893 55.000 0.00 0.00 33.88 4.96
584 783 1.070105 ACGAGGCCAAAACGTAGCA 59.930 52.632 5.01 0.00 38.47 3.49
603 802 0.459585 AGGCACGCGATTAATCACGT 60.460 50.000 22.30 22.30 45.22 4.49
653 853 1.595382 GATTCGGGCCACTCATCCG 60.595 63.158 4.39 0.00 44.59 4.18
655 855 2.443952 TCGGGCCACTCATCCGAT 60.444 61.111 4.39 0.00 46.48 4.18
656 856 2.280389 CGGGCCACTCATCCGATG 60.280 66.667 4.39 1.55 45.96 3.84
657 857 2.592861 GGGCCACTCATCCGATGC 60.593 66.667 4.39 0.00 0.00 3.91
658 858 2.190313 GGCCACTCATCCGATGCA 59.810 61.111 0.00 0.00 0.00 3.96
660 860 2.528743 GCCACTCATCCGATGCACG 61.529 63.158 3.25 0.00 42.18 5.34
661 861 2.528743 CCACTCATCCGATGCACGC 61.529 63.158 3.25 0.00 41.07 5.34
662 862 2.202932 ACTCATCCGATGCACGCC 60.203 61.111 3.25 0.00 41.07 5.68
663 863 2.107750 CTCATCCGATGCACGCCT 59.892 61.111 3.25 0.00 41.07 5.52
789 1008 3.623281 TTCGAATTCGCGCACGCAC 62.623 57.895 22.90 0.00 42.06 5.34
791 1010 4.424430 GAATTCGCGCACGCACGT 62.424 61.111 16.04 0.00 42.06 4.49
981 1222 0.889638 TGCAACTCCTCGTCTCGTCT 60.890 55.000 0.00 0.00 0.00 4.18
1013 1277 3.119245 CGTCCATCTATATAACACGGGGG 60.119 52.174 0.00 0.00 0.00 5.40
1087 1354 2.824041 GCCATTGATCGCCACCGT 60.824 61.111 0.00 0.00 35.54 4.83
1374 1692 2.184830 CCGTCGAGCTGATCCGGTA 61.185 63.158 0.00 0.00 34.10 4.02
1669 2008 3.190849 CCTCGACATGCACGGCAG 61.191 66.667 11.81 4.49 43.65 4.85
1673 2012 4.152625 GACATGCACGGCAGCGTC 62.153 66.667 12.22 12.22 43.65 5.19
1702 2047 0.318762 AGCTCAGTCGGGAGTTGAAC 59.681 55.000 0.00 0.00 37.24 3.18
1719 2064 5.539955 AGTTGAACTAACCCTTACTTCCGTA 59.460 40.000 0.00 0.00 40.24 4.02
1720 2065 5.649782 TGAACTAACCCTTACTTCCGTAG 57.350 43.478 0.00 0.00 0.00 3.51
1721 2066 4.082026 TGAACTAACCCTTACTTCCGTAGC 60.082 45.833 0.00 0.00 0.00 3.58
1740 2106 0.521291 CAGCACGGTGTTACCATTGG 59.479 55.000 10.24 0.00 38.47 3.16
1758 2124 1.273048 TGGTCAATTCAAGCCACATGC 59.727 47.619 0.00 0.00 41.71 4.06
1800 2166 2.348591 GCAGAGCGCGTTAACATAATCC 60.349 50.000 8.43 0.00 0.00 3.01
1830 2199 4.024048 CCATCGATTTAACCCATGCACTAC 60.024 45.833 0.00 0.00 0.00 2.73
1840 2209 4.585879 ACCCATGCACTACGTTTCTTAAT 58.414 39.130 0.00 0.00 0.00 1.40
1841 2210 5.007682 ACCCATGCACTACGTTTCTTAATT 58.992 37.500 0.00 0.00 0.00 1.40
1842 2211 5.475564 ACCCATGCACTACGTTTCTTAATTT 59.524 36.000 0.00 0.00 0.00 1.82
1843 2212 5.799936 CCCATGCACTACGTTTCTTAATTTG 59.200 40.000 0.00 0.00 0.00 2.32
1865 2234 9.816354 ATTTGTTTATTTATGCTGTATGAACCC 57.184 29.630 0.00 0.00 0.00 4.11
1869 2238 8.421002 GTTTATTTATGCTGTATGAACCCCATT 58.579 33.333 0.00 0.00 36.71 3.16
1926 2295 9.530129 TGCGCCGTTTATTTATTTTAAATTTTG 57.470 25.926 4.18 0.00 0.00 2.44
1940 2317 4.932268 AAATTTTGAATGCGCAATGAGG 57.068 36.364 17.11 0.00 0.00 3.86
2053 2430 8.713708 TTAATAGTGGAGGGAAATTTCAACAA 57.286 30.769 19.49 1.57 0.00 2.83
2088 2465 5.239306 TGAACTTCATGTCACATCCAGAAAC 59.761 40.000 0.00 0.00 0.00 2.78
2089 2466 4.978099 ACTTCATGTCACATCCAGAAACT 58.022 39.130 0.00 0.00 0.00 2.66
2090 2467 6.114187 ACTTCATGTCACATCCAGAAACTA 57.886 37.500 0.00 0.00 0.00 2.24
2091 2468 5.934625 ACTTCATGTCACATCCAGAAACTAC 59.065 40.000 0.00 0.00 0.00 2.73
2092 2469 4.832248 TCATGTCACATCCAGAAACTACC 58.168 43.478 0.00 0.00 0.00 3.18
2093 2470 4.532126 TCATGTCACATCCAGAAACTACCT 59.468 41.667 0.00 0.00 0.00 3.08
2094 2471 4.537135 TGTCACATCCAGAAACTACCTC 57.463 45.455 0.00 0.00 0.00 3.85
2096 2473 4.346709 TGTCACATCCAGAAACTACCTCAA 59.653 41.667 0.00 0.00 0.00 3.02
2097 2474 5.163248 TGTCACATCCAGAAACTACCTCAAA 60.163 40.000 0.00 0.00 0.00 2.69
2099 2476 6.262273 GTCACATCCAGAAACTACCTCAAAAA 59.738 38.462 0.00 0.00 0.00 1.94
2159 2536 9.847224 ATAACCCTGTTATTTATGGAACTACAG 57.153 33.333 0.00 0.00 34.33 2.74
2160 2537 7.504926 ACCCTGTTATTTATGGAACTACAGA 57.495 36.000 0.00 0.00 35.54 3.41
2161 2538 8.102484 ACCCTGTTATTTATGGAACTACAGAT 57.898 34.615 0.00 0.00 35.54 2.90
2162 2539 9.220906 ACCCTGTTATTTATGGAACTACAGATA 57.779 33.333 0.00 0.00 35.54 1.98
2202 2579 9.716531 TTTTCATACAAATTTCATATGCAACCA 57.283 25.926 11.69 0.00 0.00 3.67
2203 2580 9.887629 TTTCATACAAATTTCATATGCAACCAT 57.112 25.926 11.69 0.00 35.44 3.55
2204 2581 9.887629 TTCATACAAATTTCATATGCAACCATT 57.112 25.926 11.69 0.00 32.85 3.16
2208 2585 8.200364 ACAAATTTCATATGCAACCATTAAGC 57.800 30.769 0.00 0.00 32.85 3.09
2209 2586 7.823310 ACAAATTTCATATGCAACCATTAAGCA 59.177 29.630 0.00 0.00 43.14 3.91
2221 2598 4.395959 CCATTAAGCATGGCTGACAATT 57.604 40.909 0.00 0.00 46.59 2.32
2222 2599 4.365723 CCATTAAGCATGGCTGACAATTC 58.634 43.478 0.00 0.00 46.59 2.17
2223 2600 4.098960 CCATTAAGCATGGCTGACAATTCT 59.901 41.667 0.00 0.00 46.59 2.40
2224 2601 4.970662 TTAAGCATGGCTGACAATTCTC 57.029 40.909 0.00 0.00 39.62 2.87
2225 2602 1.760192 AGCATGGCTGACAATTCTCC 58.240 50.000 0.00 0.00 37.57 3.71
2226 2603 1.005097 AGCATGGCTGACAATTCTCCA 59.995 47.619 0.00 0.00 37.57 3.86
2227 2604 1.820519 GCATGGCTGACAATTCTCCAA 59.179 47.619 0.00 0.00 31.68 3.53
2228 2605 2.231964 GCATGGCTGACAATTCTCCAAA 59.768 45.455 0.00 0.00 31.68 3.28
2229 2606 3.118884 GCATGGCTGACAATTCTCCAAAT 60.119 43.478 0.00 0.00 31.68 2.32
2230 2607 4.430007 CATGGCTGACAATTCTCCAAATG 58.570 43.478 0.00 0.00 31.68 2.32
2231 2608 3.765381 TGGCTGACAATTCTCCAAATGA 58.235 40.909 0.00 0.00 0.00 2.57
2232 2609 4.151121 TGGCTGACAATTCTCCAAATGAA 58.849 39.130 0.00 0.00 0.00 2.57
2233 2610 4.588106 TGGCTGACAATTCTCCAAATGAAA 59.412 37.500 0.00 0.00 0.00 2.69
2234 2611 5.246656 TGGCTGACAATTCTCCAAATGAAAT 59.753 36.000 0.00 0.00 0.00 2.17
2235 2612 6.168389 GGCTGACAATTCTCCAAATGAAATT 58.832 36.000 0.00 0.00 38.98 1.82
2236 2613 6.312180 GGCTGACAATTCTCCAAATGAAATTC 59.688 38.462 0.00 0.00 33.67 2.17
2237 2614 6.869913 GCTGACAATTCTCCAAATGAAATTCA 59.130 34.615 0.00 0.00 33.67 2.57
2238 2615 7.548075 GCTGACAATTCTCCAAATGAAATTCAT 59.452 33.333 2.07 2.07 39.09 2.57
2245 2622 9.813446 ATTCTCCAAATGAAATTCATTAGAAGC 57.187 29.630 24.51 0.00 45.57 3.86
2246 2623 8.585471 TCTCCAAATGAAATTCATTAGAAGCT 57.415 30.769 20.05 2.42 45.57 3.74
2247 2624 9.028284 TCTCCAAATGAAATTCATTAGAAGCTT 57.972 29.630 20.05 0.00 45.57 3.74
2248 2625 9.298774 CTCCAAATGAAATTCATTAGAAGCTTC 57.701 33.333 20.05 19.11 45.57 3.86
2249 2626 8.805175 TCCAAATGAAATTCATTAGAAGCTTCA 58.195 29.630 27.57 9.13 45.57 3.02
2250 2627 9.595823 CCAAATGAAATTCATTAGAAGCTTCAT 57.404 29.630 27.57 15.02 45.57 2.57
2267 2644 9.214953 GAAGCTTCATAACAATATGTTTCTTCG 57.785 33.333 21.67 0.00 41.45 3.79
2270 2647 8.175069 GCTTCATAACAATATGTTTCTTCGTCA 58.825 33.333 0.54 0.00 41.45 4.35
2274 2651 9.425893 CATAACAATATGTTTCTTCGTCATGTC 57.574 33.333 0.54 0.00 41.45 3.06
2286 2663 9.653287 TTTCTTCGTCATGTCTTTCTATACATT 57.347 29.630 0.00 0.00 34.12 2.71
2290 2667 6.756542 TCGTCATGTCTTTCTATACATTGTGG 59.243 38.462 0.00 0.00 34.12 4.17
2428 2809 8.055181 TGTTTCTGATATGCCTAAAAGGATCTT 58.945 33.333 0.00 0.00 37.67 2.40
2429 2810 8.563732 GTTTCTGATATGCCTAAAAGGATCTTC 58.436 37.037 0.00 0.00 37.67 2.87
2476 2857 9.290988 TGTTTTCTATAATAATGTGGTGTGTGT 57.709 29.630 0.00 0.00 0.00 3.72
2477 2858 9.554724 GTTTTCTATAATAATGTGGTGTGTGTG 57.445 33.333 0.00 0.00 0.00 3.82
2478 2859 8.856153 TTTCTATAATAATGTGGTGTGTGTGT 57.144 30.769 0.00 0.00 0.00 3.72
2479 2860 7.841915 TCTATAATAATGTGGTGTGTGTGTG 57.158 36.000 0.00 0.00 0.00 3.82
2480 2861 7.390823 TCTATAATAATGTGGTGTGTGTGTGT 58.609 34.615 0.00 0.00 0.00 3.72
2481 2862 4.566545 AATAATGTGGTGTGTGTGTGTG 57.433 40.909 0.00 0.00 0.00 3.82
2482 2863 1.832883 AATGTGGTGTGTGTGTGTGT 58.167 45.000 0.00 0.00 0.00 3.72
2483 2864 1.093972 ATGTGGTGTGTGTGTGTGTG 58.906 50.000 0.00 0.00 0.00 3.82
2484 2865 0.250510 TGTGGTGTGTGTGTGTGTGT 60.251 50.000 0.00 0.00 0.00 3.72
2485 2866 0.167908 GTGGTGTGTGTGTGTGTGTG 59.832 55.000 0.00 0.00 0.00 3.82
2486 2867 0.250510 TGGTGTGTGTGTGTGTGTGT 60.251 50.000 0.00 0.00 0.00 3.72
2487 2868 0.878416 GGTGTGTGTGTGTGTGTGTT 59.122 50.000 0.00 0.00 0.00 3.32
2488 2869 1.268352 GGTGTGTGTGTGTGTGTGTTT 59.732 47.619 0.00 0.00 0.00 2.83
2489 2870 2.287909 GGTGTGTGTGTGTGTGTGTTTT 60.288 45.455 0.00 0.00 0.00 2.43
2490 2871 3.376540 GTGTGTGTGTGTGTGTGTTTTT 58.623 40.909 0.00 0.00 0.00 1.94
2513 2894 3.141409 GGGGGATGTGGTGTGTTTT 57.859 52.632 0.00 0.00 0.00 2.43
2544 2927 9.821662 CAATAAAGACACATGCTCATACATATG 57.178 33.333 0.00 0.00 30.66 1.78
2558 2941 6.852664 TCATACATATGCCTATACACTCACG 58.147 40.000 1.58 0.00 33.76 4.35
2559 2942 3.914312 ACATATGCCTATACACTCACGC 58.086 45.455 1.58 0.00 0.00 5.34
2561 2944 1.414158 ATGCCTATACACTCACGCCT 58.586 50.000 0.00 0.00 0.00 5.52
2576 2963 2.695055 CCTATGAACGCACGCACG 59.305 61.111 0.00 0.00 39.50 5.34
2577 2964 2.695055 CTATGAACGCACGCACGG 59.305 61.111 2.61 0.00 37.37 4.94
2581 2968 4.349871 GAACGCACGCACGGACAC 62.350 66.667 2.61 0.00 37.37 3.67
2586 2973 2.577059 CACGCACGGACACCCTAT 59.423 61.111 0.00 0.00 0.00 2.57
2591 2978 0.757935 GCACGGACACCCTATCCCTA 60.758 60.000 0.00 0.00 31.99 3.53
2598 2985 4.104831 GGACACCCTATCCCTATAAGCAT 58.895 47.826 0.00 0.00 0.00 3.79
2603 2990 4.047265 ACCCTATCCCTATAAGCATCTCCA 59.953 45.833 0.00 0.00 0.00 3.86
2610 2997 4.837860 CCCTATAAGCATCTCCAAGAGACT 59.162 45.833 0.00 0.00 41.76 3.24
2619 3006 0.539669 TCCAAGAGACTGAGCCGACA 60.540 55.000 0.00 0.00 0.00 4.35
2621 3008 0.315251 CAAGAGACTGAGCCGACACA 59.685 55.000 0.00 0.00 0.00 3.72
2637 3024 5.277058 GCCGACACATCATCTTGAGATTAAC 60.277 44.000 0.00 0.00 31.21 2.01
2644 3031 7.901889 CACATCATCTTGAGATTAACGAAGTTG 59.098 37.037 0.00 0.00 41.73 3.16
2654 3041 2.690326 ACGAAGTTGCCACAGACAC 58.310 52.632 0.00 0.00 37.78 3.67
2673 3060 1.630148 CCTTCATGGTCGACGAGAAC 58.370 55.000 9.92 0.00 37.00 3.01
2685 3072 3.403276 CGAGAACGTCTCCTTCCAC 57.597 57.895 8.73 0.00 40.34 4.02
2696 3083 2.301870 TCTCCTTCCACTAAACGCACAT 59.698 45.455 0.00 0.00 0.00 3.21
2710 3097 1.675714 CGCACATCACTGAAAGGCCTA 60.676 52.381 5.16 0.00 39.30 3.93
2753 3140 5.413309 TGTGGTGTTTTTGGAGTGAATTT 57.587 34.783 0.00 0.00 0.00 1.82
2756 3143 6.106003 GTGGTGTTTTTGGAGTGAATTTTCT 58.894 36.000 0.00 0.00 0.00 2.52
2823 3210 8.403236 GCAGTGAGTTAAGTTTAAGGAAGAAAA 58.597 33.333 0.00 0.00 0.00 2.29
2837 3224 6.877611 AGGAAGAAAATAGTTGCGAAAAGA 57.122 33.333 0.00 0.00 0.00 2.52
2842 3229 9.995379 GAAGAAAATAGTTGCGAAAAGATTTTC 57.005 29.630 19.87 19.87 40.83 2.29
2849 3236 6.801575 AGTTGCGAAAAGATTTTCAAACCTA 58.198 32.000 19.66 4.06 45.15 3.08
2855 3242 7.062255 GCGAAAAGATTTTCAAACCTAGGATTG 59.938 37.037 22.48 22.48 45.15 2.67
2857 3244 6.916360 AAGATTTTCAAACCTAGGATTGCA 57.084 33.333 23.40 12.84 0.00 4.08
2858 3245 6.272822 AGATTTTCAAACCTAGGATTGCAC 57.727 37.500 23.40 13.30 0.00 4.57
2905 3294 4.276058 ACAGGCAAATTGAATTCCCAAG 57.724 40.909 2.27 5.11 0.00 3.61
2909 3298 4.533311 AGGCAAATTGAATTCCCAAGATGT 59.467 37.500 2.27 0.00 0.00 3.06
2913 3302 6.427547 GCAAATTGAATTCCCAAGATGTCAAA 59.572 34.615 2.27 0.00 32.16 2.69
2925 3314 6.349280 CCCAAGATGTCAAATTATGTTGTCGT 60.349 38.462 0.00 0.00 0.00 4.34
2934 3323 6.652900 TCAAATTATGTTGTCGTGAGGATGAA 59.347 34.615 0.00 0.00 0.00 2.57
2956 3345 8.152309 TGAAAATTTCCTTTAGCAAACAATGG 57.848 30.769 3.00 0.00 0.00 3.16
2957 3346 6.558771 AAATTTCCTTTAGCAAACAATGGC 57.441 33.333 0.00 0.00 0.00 4.40
2963 3352 4.427312 CTTTAGCAAACAATGGCAGATCC 58.573 43.478 0.00 0.00 0.00 3.36
2968 3357 1.927487 AACAATGGCAGATCCTTGCA 58.073 45.000 8.97 0.00 45.86 4.08
2971 3360 2.167693 ACAATGGCAGATCCTTGCAATG 59.832 45.455 0.00 0.00 45.86 2.82
2977 3366 3.118884 GGCAGATCCTTGCAATGTTCAAT 60.119 43.478 13.20 0.00 45.86 2.57
2978 3367 4.501071 GCAGATCCTTGCAATGTTCAATT 58.499 39.130 13.20 0.00 43.53 2.32
2979 3368 4.933400 GCAGATCCTTGCAATGTTCAATTT 59.067 37.500 13.20 0.00 43.53 1.82
2980 3369 5.410439 GCAGATCCTTGCAATGTTCAATTTT 59.590 36.000 13.20 0.00 43.53 1.82
2999 3388 3.192799 TTTTTGTCGGGAACTGCCA 57.807 47.368 0.00 0.00 38.95 4.92
3005 3394 1.302511 TCGGGAACTGCCAAGCTTC 60.303 57.895 0.00 0.00 38.95 3.86
3008 3397 1.610624 CGGGAACTGCCAAGCTTCTTA 60.611 52.381 0.00 0.00 38.95 2.10
3015 3404 6.410942 AACTGCCAAGCTTCTTAAAGAAAT 57.589 33.333 0.00 0.00 33.19 2.17
3016 3405 6.410942 ACTGCCAAGCTTCTTAAAGAAATT 57.589 33.333 0.00 0.00 33.19 1.82
3044 3433 4.678509 TCCTCGTGACAACATAATTTGC 57.321 40.909 0.00 0.00 0.00 3.68
3046 3435 4.154015 TCCTCGTGACAACATAATTTGCTG 59.846 41.667 0.00 0.00 0.00 4.41
3054 3443 8.690840 GTGACAACATAATTTGCTGTAAGAAAC 58.309 33.333 0.00 0.00 34.82 2.78
3058 3447 8.751335 CAACATAATTTGCTGTAAGAAACGTTT 58.249 29.630 14.57 14.57 34.07 3.60
3065 3454 4.737765 TGCTGTAAGAAACGTTTGATTTGC 59.262 37.500 20.10 14.81 34.07 3.68
3077 3466 5.050431 ACGTTTGATTTGCCATGCTTAAAAC 60.050 36.000 0.00 0.00 0.00 2.43
3079 3468 4.888326 TGATTTGCCATGCTTAAAACCT 57.112 36.364 0.00 0.00 0.00 3.50
3080 3469 5.991933 TGATTTGCCATGCTTAAAACCTA 57.008 34.783 0.00 0.00 0.00 3.08
3082 3471 3.866883 TTGCCATGCTTAAAACCTAGC 57.133 42.857 0.00 0.00 37.89 3.42
3128 3518 7.435192 AGTGAACCTTTAGCTTTTCAAATTTCG 59.565 33.333 0.00 0.00 30.00 3.46
3129 3519 7.434013 GTGAACCTTTAGCTTTTCAAATTTCGA 59.566 33.333 0.00 0.00 30.00 3.71
3132 3522 5.346011 CCTTTAGCTTTTCAAATTTCGAGGC 59.654 40.000 0.00 0.00 0.00 4.70
3141 3531 7.701809 TTTCAAATTTCGAGGCGTTAATTTT 57.298 28.000 1.45 0.26 33.73 1.82
3151 3541 3.508402 AGGCGTTAATTTTTAGGTGGTGG 59.492 43.478 0.00 0.00 0.00 4.61
3166 3556 3.469739 GTGGTGGTTCGAGGAGTTAAAA 58.530 45.455 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.158798 GGGATGGGACTAAACCTAGTGC 60.159 54.545 0.00 0.00 43.76 4.40
9 10 2.102588 CGGGATGGGACTAAACCTAGTG 59.897 54.545 0.00 0.00 38.55 2.74
10 11 2.395619 CGGGATGGGACTAAACCTAGT 58.604 52.381 0.00 0.00 41.28 2.57
11 12 1.692519 CCGGGATGGGACTAAACCTAG 59.307 57.143 0.00 0.00 0.00 3.02
12 13 1.291637 TCCGGGATGGGACTAAACCTA 59.708 52.381 0.00 0.00 38.76 3.08
13 14 0.043637 TCCGGGATGGGACTAAACCT 59.956 55.000 0.00 0.00 38.76 3.50
14 15 0.913924 TTCCGGGATGGGACTAAACC 59.086 55.000 0.00 0.00 38.76 3.27
15 16 2.793288 TTTCCGGGATGGGACTAAAC 57.207 50.000 0.00 0.00 38.76 2.01
16 17 2.092103 CCATTTCCGGGATGGGACTAAA 60.092 50.000 22.83 5.88 40.30 1.85
17 18 1.493022 CCATTTCCGGGATGGGACTAA 59.507 52.381 22.83 0.00 40.30 2.24
18 19 1.136828 CCATTTCCGGGATGGGACTA 58.863 55.000 22.83 0.00 40.30 2.59
19 20 0.623324 TCCATTTCCGGGATGGGACT 60.623 55.000 27.12 0.00 43.44 3.85
20 21 0.257616 TTCCATTTCCGGGATGGGAC 59.742 55.000 27.12 0.00 43.44 4.46
21 22 0.550914 CTTCCATTTCCGGGATGGGA 59.449 55.000 27.12 21.64 43.44 4.37
22 23 0.550914 TCTTCCATTTCCGGGATGGG 59.449 55.000 27.12 14.14 43.44 4.00
23 24 2.092429 TCTTCTTCCATTTCCGGGATGG 60.092 50.000 23.95 23.95 44.39 3.51
24 25 3.209410 CTCTTCTTCCATTTCCGGGATG 58.791 50.000 0.00 6.69 33.63 3.51
25 26 2.846827 ACTCTTCTTCCATTTCCGGGAT 59.153 45.455 0.00 0.00 33.63 3.85
26 27 2.266279 ACTCTTCTTCCATTTCCGGGA 58.734 47.619 0.00 0.00 0.00 5.14
27 28 2.749621 CAACTCTTCTTCCATTTCCGGG 59.250 50.000 0.00 0.00 0.00 5.73
28 29 2.749621 CCAACTCTTCTTCCATTTCCGG 59.250 50.000 0.00 0.00 0.00 5.14
29 30 3.437049 GTCCAACTCTTCTTCCATTTCCG 59.563 47.826 0.00 0.00 0.00 4.30
30 31 3.759086 GGTCCAACTCTTCTTCCATTTCC 59.241 47.826 0.00 0.00 0.00 3.13
31 32 4.657013 AGGTCCAACTCTTCTTCCATTTC 58.343 43.478 0.00 0.00 0.00 2.17
32 33 4.507512 GGAGGTCCAACTCTTCTTCCATTT 60.508 45.833 0.00 0.00 37.63 2.32
33 34 3.009584 GGAGGTCCAACTCTTCTTCCATT 59.990 47.826 0.00 0.00 37.63 3.16
34 35 2.573915 GGAGGTCCAACTCTTCTTCCAT 59.426 50.000 0.00 0.00 37.63 3.41
35 36 1.978580 GGAGGTCCAACTCTTCTTCCA 59.021 52.381 0.00 0.00 37.63 3.53
36 37 2.261729 AGGAGGTCCAACTCTTCTTCC 58.738 52.381 0.00 0.00 38.89 3.46
37 38 5.685520 ATAAGGAGGTCCAACTCTTCTTC 57.314 43.478 0.00 0.00 38.89 2.87
38 39 6.960542 TCTTATAAGGAGGTCCAACTCTTCTT 59.039 38.462 12.54 0.00 38.89 2.52
39 40 6.503944 TCTTATAAGGAGGTCCAACTCTTCT 58.496 40.000 12.54 0.00 38.89 2.85
40 41 6.381707 ACTCTTATAAGGAGGTCCAACTCTTC 59.618 42.308 12.54 0.00 38.89 2.87
41 42 6.265304 ACTCTTATAAGGAGGTCCAACTCTT 58.735 40.000 12.54 0.00 38.89 2.85
42 43 5.844601 ACTCTTATAAGGAGGTCCAACTCT 58.155 41.667 12.54 0.00 38.89 3.24
43 44 6.547930 AACTCTTATAAGGAGGTCCAACTC 57.452 41.667 12.54 0.00 38.89 3.01
44 45 6.731448 AGAAACTCTTATAAGGAGGTCCAACT 59.269 38.462 12.54 3.99 38.89 3.16
45 46 6.948589 AGAAACTCTTATAAGGAGGTCCAAC 58.051 40.000 12.54 2.24 38.89 3.77
46 47 6.960542 AGAGAAACTCTTATAAGGAGGTCCAA 59.039 38.462 12.54 0.00 37.60 3.53
47 48 6.503944 AGAGAAACTCTTATAAGGAGGTCCA 58.496 40.000 12.54 0.00 37.60 4.02
61 62 9.507329 TTCAATAGCATGTAAAAGAGAAACTCT 57.493 29.630 0.00 0.00 43.37 3.24
62 63 9.766277 CTTCAATAGCATGTAAAAGAGAAACTC 57.234 33.333 0.00 0.00 0.00 3.01
80 81 6.757947 CCTCTTCTCTTCTCAAGCTTCAATAG 59.242 42.308 0.00 0.00 0.00 1.73
81 82 6.638610 CCTCTTCTCTTCTCAAGCTTCAATA 58.361 40.000 0.00 0.00 0.00 1.90
82 83 5.490159 CCTCTTCTCTTCTCAAGCTTCAAT 58.510 41.667 0.00 0.00 0.00 2.57
83 84 4.802248 GCCTCTTCTCTTCTCAAGCTTCAA 60.802 45.833 0.00 0.00 0.00 2.69
84 85 3.306641 GCCTCTTCTCTTCTCAAGCTTCA 60.307 47.826 0.00 0.00 0.00 3.02
85 86 3.261580 GCCTCTTCTCTTCTCAAGCTTC 58.738 50.000 0.00 0.00 0.00 3.86
86 87 2.027285 GGCCTCTTCTCTTCTCAAGCTT 60.027 50.000 0.00 0.00 0.00 3.74
87 88 1.554617 GGCCTCTTCTCTTCTCAAGCT 59.445 52.381 0.00 0.00 0.00 3.74
88 89 1.406751 GGGCCTCTTCTCTTCTCAAGC 60.407 57.143 0.84 0.00 0.00 4.01
89 90 2.168313 GAGGGCCTCTTCTCTTCTCAAG 59.832 54.545 26.44 0.00 0.00 3.02
90 91 2.183679 GAGGGCCTCTTCTCTTCTCAA 58.816 52.381 26.44 0.00 0.00 3.02
91 92 1.859302 GAGGGCCTCTTCTCTTCTCA 58.141 55.000 26.44 0.00 0.00 3.27
92 93 0.744281 CGAGGGCCTCTTCTCTTCTC 59.256 60.000 29.81 1.86 0.00 2.87
93 94 1.326951 GCGAGGGCCTCTTCTCTTCT 61.327 60.000 29.81 0.00 0.00 2.85
94 95 1.142965 GCGAGGGCCTCTTCTCTTC 59.857 63.158 29.81 3.42 0.00 2.87
95 96 2.716017 CGCGAGGGCCTCTTCTCTT 61.716 63.158 29.81 0.00 35.02 2.85
96 97 3.144193 CGCGAGGGCCTCTTCTCT 61.144 66.667 29.81 0.00 35.02 3.10
97 98 4.882396 GCGCGAGGGCCTCTTCTC 62.882 72.222 29.81 13.49 35.02 2.87
106 107 4.504916 CAGAGGAGTGCGCGAGGG 62.505 72.222 12.10 0.00 0.00 4.30
133 134 1.853319 CTCAATAATCCCGCGACGC 59.147 57.895 8.23 10.49 0.00 5.19
134 135 1.557443 GGCTCAATAATCCCGCGACG 61.557 60.000 8.23 0.00 0.00 5.12
135 136 1.557443 CGGCTCAATAATCCCGCGAC 61.557 60.000 8.23 0.00 33.77 5.19
136 137 1.300620 CGGCTCAATAATCCCGCGA 60.301 57.895 8.23 0.00 33.77 5.87
137 138 1.284982 CTCGGCTCAATAATCCCGCG 61.285 60.000 0.00 0.00 40.49 6.46
138 139 1.569479 GCTCGGCTCAATAATCCCGC 61.569 60.000 0.00 0.00 40.49 6.13
139 140 0.951040 GGCTCGGCTCAATAATCCCG 60.951 60.000 0.00 0.00 41.97 5.14
140 141 0.951040 CGGCTCGGCTCAATAATCCC 60.951 60.000 0.00 0.00 0.00 3.85
141 142 0.951040 CCGGCTCGGCTCAATAATCC 60.951 60.000 0.56 0.00 41.17 3.01
142 143 2.533318 CCGGCTCGGCTCAATAATC 58.467 57.895 0.56 0.00 41.17 1.75
143 144 4.779475 CCGGCTCGGCTCAATAAT 57.221 55.556 0.56 0.00 41.17 1.28
157 158 4.790962 TCTCCCGTCGACCTCCGG 62.791 72.222 10.58 7.65 43.82 5.14
158 159 3.203412 CTCTCCCGTCGACCTCCG 61.203 72.222 10.58 0.00 40.25 4.63
159 160 3.519930 GCTCTCCCGTCGACCTCC 61.520 72.222 10.58 0.00 0.00 4.30
160 161 2.750637 TGCTCTCCCGTCGACCTC 60.751 66.667 10.58 0.00 0.00 3.85
161 162 2.752238 CTGCTCTCCCGTCGACCT 60.752 66.667 10.58 0.00 0.00 3.85
162 163 3.827898 CCTGCTCTCCCGTCGACC 61.828 72.222 10.58 0.00 0.00 4.79
163 164 3.053849 GACCTGCTCTCCCGTCGAC 62.054 68.421 5.18 5.18 0.00 4.20
164 165 2.750637 GACCTGCTCTCCCGTCGA 60.751 66.667 0.00 0.00 0.00 4.20
165 166 2.752238 AGACCTGCTCTCCCGTCG 60.752 66.667 0.00 0.00 0.00 5.12
166 167 3.202467 GAGACCTGCTCTCCCGTC 58.798 66.667 0.00 0.00 39.87 4.79
173 174 1.609320 GGTGGTTTCAGAGACCTGCTC 60.609 57.143 11.37 0.00 44.29 4.26
174 175 0.398318 GGTGGTTTCAGAGACCTGCT 59.602 55.000 11.37 0.00 40.20 4.24
175 176 0.398318 AGGTGGTTTCAGAGACCTGC 59.602 55.000 11.37 4.57 37.44 4.85
177 178 0.398318 GCAGGTGGTTTCAGAGACCT 59.602 55.000 11.37 0.00 39.52 3.85
178 179 0.606673 GGCAGGTGGTTTCAGAGACC 60.607 60.000 2.96 2.96 37.69 3.85
179 180 0.951040 CGGCAGGTGGTTTCAGAGAC 60.951 60.000 0.00 0.00 0.00 3.36
180 181 1.371183 CGGCAGGTGGTTTCAGAGA 59.629 57.895 0.00 0.00 0.00 3.10
181 182 1.672356 CCGGCAGGTGGTTTCAGAG 60.672 63.158 0.00 0.00 0.00 3.35
182 183 2.429930 CCGGCAGGTGGTTTCAGA 59.570 61.111 0.00 0.00 0.00 3.27
183 184 3.365265 GCCGGCAGGTGGTTTCAG 61.365 66.667 24.80 0.00 40.50 3.02
230 231 8.153479 AGCTTATCCGCAAAAAGAAAATTTTT 57.847 26.923 4.63 0.00 30.31 1.94
231 232 7.095229 GGAGCTTATCCGCAAAAAGAAAATTTT 60.095 33.333 2.28 2.28 38.67 1.82
235 236 4.805219 GGAGCTTATCCGCAAAAAGAAAA 58.195 39.130 0.00 0.00 38.67 2.29
236 237 4.434713 GGAGCTTATCCGCAAAAAGAAA 57.565 40.909 0.00 0.00 38.67 2.52
274 276 2.266554 CTCGTGAAGCCTCATGAACTC 58.733 52.381 8.54 0.00 45.03 3.01
275 277 1.620819 ACTCGTGAAGCCTCATGAACT 59.379 47.619 8.54 0.00 45.03 3.01
276 278 1.996191 GACTCGTGAAGCCTCATGAAC 59.004 52.381 8.54 2.93 45.03 3.18
277 279 1.402852 CGACTCGTGAAGCCTCATGAA 60.403 52.381 8.54 0.00 45.03 2.57
278 280 0.171231 CGACTCGTGAAGCCTCATGA 59.829 55.000 7.03 7.03 43.85 3.07
279 281 0.171231 TCGACTCGTGAAGCCTCATG 59.829 55.000 0.00 0.00 39.58 3.07
280 282 1.107114 ATCGACTCGTGAAGCCTCAT 58.893 50.000 0.00 0.00 33.05 2.90
281 283 0.888619 AATCGACTCGTGAAGCCTCA 59.111 50.000 0.00 0.00 0.00 3.86
282 284 1.551145 GAATCGACTCGTGAAGCCTC 58.449 55.000 0.00 0.00 0.00 4.70
283 285 0.173708 GGAATCGACTCGTGAAGCCT 59.826 55.000 0.00 0.00 0.00 4.58
284 286 0.173708 AGGAATCGACTCGTGAAGCC 59.826 55.000 0.00 0.00 0.00 4.35
285 287 2.541999 CCTAGGAATCGACTCGTGAAGC 60.542 54.545 1.05 0.00 0.00 3.86
286 288 2.943690 TCCTAGGAATCGACTCGTGAAG 59.056 50.000 9.71 0.00 0.00 3.02
287 289 2.995283 TCCTAGGAATCGACTCGTGAA 58.005 47.619 9.71 0.00 0.00 3.18
288 290 2.704464 TCCTAGGAATCGACTCGTGA 57.296 50.000 9.71 0.00 0.00 4.35
289 291 2.030717 CCATCCTAGGAATCGACTCGTG 60.031 54.545 17.30 5.89 0.00 4.35
290 292 2.231529 CCATCCTAGGAATCGACTCGT 58.768 52.381 17.30 0.00 0.00 4.18
291 293 1.542030 CCCATCCTAGGAATCGACTCG 59.458 57.143 17.30 0.00 0.00 4.18
292 294 2.823154 CTCCCATCCTAGGAATCGACTC 59.177 54.545 17.30 0.00 31.49 3.36
293 295 2.491825 CCTCCCATCCTAGGAATCGACT 60.492 54.545 17.30 0.00 34.58 4.18
294 296 1.896465 CCTCCCATCCTAGGAATCGAC 59.104 57.143 17.30 0.00 34.58 4.20
295 297 1.787058 TCCTCCCATCCTAGGAATCGA 59.213 52.381 17.30 9.98 38.97 3.59
296 298 2.310779 TCCTCCCATCCTAGGAATCG 57.689 55.000 17.30 7.40 38.97 3.34
300 302 3.014110 ACTTCTTTCCTCCCATCCTAGGA 59.986 47.826 15.46 15.46 40.18 2.94
301 303 3.135530 CACTTCTTTCCTCCCATCCTAGG 59.864 52.174 0.82 0.82 0.00 3.02
302 304 4.033709 TCACTTCTTTCCTCCCATCCTAG 58.966 47.826 0.00 0.00 0.00 3.02
303 305 4.074799 TCACTTCTTTCCTCCCATCCTA 57.925 45.455 0.00 0.00 0.00 2.94
304 306 2.921221 TCACTTCTTTCCTCCCATCCT 58.079 47.619 0.00 0.00 0.00 3.24
305 307 3.549794 CATCACTTCTTTCCTCCCATCC 58.450 50.000 0.00 0.00 0.00 3.51
306 308 2.948315 GCATCACTTCTTTCCTCCCATC 59.052 50.000 0.00 0.00 0.00 3.51
307 309 2.309755 TGCATCACTTCTTTCCTCCCAT 59.690 45.455 0.00 0.00 0.00 4.00
308 310 1.704628 TGCATCACTTCTTTCCTCCCA 59.295 47.619 0.00 0.00 0.00 4.37
309 311 2.087646 GTGCATCACTTCTTTCCTCCC 58.912 52.381 0.00 0.00 0.00 4.30
310 312 1.734465 CGTGCATCACTTCTTTCCTCC 59.266 52.381 0.00 0.00 31.34 4.30
311 313 2.158449 CACGTGCATCACTTCTTTCCTC 59.842 50.000 0.82 0.00 31.34 3.71
312 314 2.146342 CACGTGCATCACTTCTTTCCT 58.854 47.619 0.82 0.00 31.34 3.36
313 315 1.197721 CCACGTGCATCACTTCTTTCC 59.802 52.381 10.91 0.00 31.34 3.13
369 566 5.175127 GTTCCTTGGAAGAAAGCAAACAAA 58.825 37.500 1.83 0.00 0.00 2.83
446 643 1.565288 TCCGGTTGGTTAATTAGGGGG 59.435 52.381 0.00 0.00 36.30 5.40
506 704 1.790755 ATGTATCACGTGCGTTGTGT 58.209 45.000 11.67 0.00 38.48 3.72
513 711 0.718904 TGTGCGAATGTATCACGTGC 59.281 50.000 11.67 0.00 33.69 5.34
538 736 2.027285 GGTGGTGAAAAATGGAATGGGG 60.027 50.000 0.00 0.00 0.00 4.96
542 740 2.302733 GCTGGGTGGTGAAAAATGGAAT 59.697 45.455 0.00 0.00 0.00 3.01
573 771 1.440353 GCGTGCCTGCTACGTTTTG 60.440 57.895 0.00 0.00 43.09 2.44
574 772 2.943653 GCGTGCCTGCTACGTTTT 59.056 55.556 0.00 0.00 43.09 2.43
603 802 1.153449 CGGATGGACGCCAAAGCTA 60.153 57.895 2.68 0.00 36.95 3.32
653 853 2.012237 CTGTGATGAGGCGTGCATC 58.988 57.895 0.00 0.00 41.87 3.91
654 854 2.110967 GCTGTGATGAGGCGTGCAT 61.111 57.895 0.00 0.00 0.00 3.96
655 855 2.743538 GCTGTGATGAGGCGTGCA 60.744 61.111 0.00 0.00 0.00 4.57
656 856 3.503363 GGCTGTGATGAGGCGTGC 61.503 66.667 0.00 0.00 0.00 5.34
657 857 1.812922 GAGGCTGTGATGAGGCGTG 60.813 63.158 0.00 0.00 43.24 5.34
658 858 1.954362 GAGAGGCTGTGATGAGGCGT 61.954 60.000 0.00 0.00 43.24 5.68
660 860 1.227205 CGAGAGGCTGTGATGAGGC 60.227 63.158 0.00 0.00 38.81 4.70
661 861 0.534412 AACGAGAGGCTGTGATGAGG 59.466 55.000 0.00 0.00 0.00 3.86
662 862 2.376808 AAACGAGAGGCTGTGATGAG 57.623 50.000 0.00 0.00 0.00 2.90
663 863 2.839486 AAAACGAGAGGCTGTGATGA 57.161 45.000 0.00 0.00 0.00 2.92
718 937 0.107848 CGGCAACCGTTTCCTCCTAT 60.108 55.000 0.00 0.00 42.73 2.57
719 938 1.294138 CGGCAACCGTTTCCTCCTA 59.706 57.895 0.00 0.00 42.73 2.94
902 1130 4.360405 ACCCGATGGTGGTTGGGC 62.360 66.667 0.00 0.00 45.49 5.36
981 1222 1.746470 TAGATGGACGCGACAAGAGA 58.254 50.000 15.93 0.00 0.00 3.10
1045 1310 1.266989 GCTAAGCACTCCACCAACAAC 59.733 52.381 0.00 0.00 0.00 3.32
1046 1311 1.604604 GCTAAGCACTCCACCAACAA 58.395 50.000 0.00 0.00 0.00 2.83
1047 1312 0.602638 CGCTAAGCACTCCACCAACA 60.603 55.000 0.00 0.00 0.00 3.33
1087 1354 4.716794 GAGACGAGATAGAGGGAGGTTTA 58.283 47.826 0.00 0.00 0.00 2.01
1126 1408 3.834799 GACGGACGGGCTAGTGGG 61.835 72.222 0.00 0.00 0.00 4.61
1127 1409 3.834799 GGACGGACGGGCTAGTGG 61.835 72.222 0.00 0.00 0.00 4.00
1359 1677 2.831366 GCGTACCGGATCAGCTCGA 61.831 63.158 9.46 0.00 0.00 4.04
1567 1900 2.742372 TTCTTCTTCGGCAGCGCC 60.742 61.111 2.29 9.20 46.75 6.53
1568 1901 2.744768 CCTTCTTCTTCGGCAGCGC 61.745 63.158 0.00 0.00 0.00 5.92
1569 1902 2.103042 CCCTTCTTCTTCGGCAGCG 61.103 63.158 0.00 0.00 0.00 5.18
1570 1903 2.402572 GCCCTTCTTCTTCGGCAGC 61.403 63.158 0.00 0.00 41.25 5.25
1571 1904 1.003355 TGCCCTTCTTCTTCGGCAG 60.003 57.895 0.00 0.00 46.26 4.85
1573 1906 0.321653 TCTTGCCCTTCTTCTTCGGC 60.322 55.000 0.00 0.00 41.99 5.54
1574 1907 1.443802 GTCTTGCCCTTCTTCTTCGG 58.556 55.000 0.00 0.00 0.00 4.30
1575 1908 1.071605 CGTCTTGCCCTTCTTCTTCG 58.928 55.000 0.00 0.00 0.00 3.79
1576 1909 1.002087 TCCGTCTTGCCCTTCTTCTTC 59.998 52.381 0.00 0.00 0.00 2.87
1669 2008 1.654743 GAGCTCGATGTACCGACGC 60.655 63.158 0.00 0.00 34.56 5.19
1673 2012 0.316278 CGACTGAGCTCGATGTACCG 60.316 60.000 9.64 5.34 35.58 4.02
1719 2064 2.825982 TGGTAACACCGTGCTGCT 59.174 55.556 0.00 0.00 46.17 4.24
1800 2166 5.209818 TGGGTTAAATCGATGGCTACTAG 57.790 43.478 0.00 0.00 0.00 2.57
1840 2209 8.254508 GGGGTTCATACAGCATAAATAAACAAA 58.745 33.333 0.00 0.00 0.00 2.83
1841 2210 7.397476 TGGGGTTCATACAGCATAAATAAACAA 59.603 33.333 0.00 0.00 0.00 2.83
1842 2211 6.892456 TGGGGTTCATACAGCATAAATAAACA 59.108 34.615 0.00 0.00 0.00 2.83
1843 2212 7.341445 TGGGGTTCATACAGCATAAATAAAC 57.659 36.000 0.00 0.00 0.00 2.01
1854 2223 2.830923 TGGCAAAATGGGGTTCATACAG 59.169 45.455 0.00 0.00 34.44 2.74
1865 2234 1.421382 CGAGCAACTTGGCAAAATGG 58.579 50.000 0.00 0.00 35.83 3.16
1869 2238 1.795170 GAGGCGAGCAACTTGGCAAA 61.795 55.000 10.64 0.00 42.10 3.68
1926 2295 1.621107 CACAACCTCATTGCGCATTC 58.379 50.000 12.75 0.00 42.62 2.67
1931 2308 1.130955 GTTTGCACAACCTCATTGCG 58.869 50.000 0.00 0.00 42.62 4.85
1990 2367 9.533253 CAAAGTTTGTATGAAAAGTGGAATTCT 57.467 29.630 7.48 0.00 0.00 2.40
1991 2368 8.764287 CCAAAGTTTGTATGAAAAGTGGAATTC 58.236 33.333 14.36 0.00 0.00 2.17
1992 2369 8.264347 ACCAAAGTTTGTATGAAAAGTGGAATT 58.736 29.630 14.36 0.00 0.00 2.17
1993 2370 7.791029 ACCAAAGTTTGTATGAAAAGTGGAAT 58.209 30.769 14.36 0.00 0.00 3.01
1994 2371 7.176589 ACCAAAGTTTGTATGAAAAGTGGAA 57.823 32.000 14.36 0.00 0.00 3.53
1995 2372 6.783708 ACCAAAGTTTGTATGAAAAGTGGA 57.216 33.333 14.36 0.00 0.00 4.02
2027 2404 8.893563 TGTTGAAATTTCCCTCCACTATTAAT 57.106 30.769 15.48 0.00 0.00 1.40
2033 2410 5.660864 TCTTTTGTTGAAATTTCCCTCCACT 59.339 36.000 15.48 0.00 0.00 4.00
2034 2411 5.912892 TCTTTTGTTGAAATTTCCCTCCAC 58.087 37.500 15.48 5.42 0.00 4.02
2068 2445 5.352569 GGTAGTTTCTGGATGTGACATGAAG 59.647 44.000 1.23 0.00 0.00 3.02
2134 2511 9.049050 TCTGTAGTTCCATAAATAACAGGGTTA 57.951 33.333 0.00 0.00 35.11 2.85
2201 2578 5.258456 AGAATTGTCAGCCATGCTTAATG 57.742 39.130 0.00 0.00 36.40 1.90
2202 2579 4.340381 GGAGAATTGTCAGCCATGCTTAAT 59.660 41.667 4.83 0.00 36.40 1.40
2203 2580 3.696051 GGAGAATTGTCAGCCATGCTTAA 59.304 43.478 4.83 0.00 36.40 1.85
2204 2581 3.282021 GGAGAATTGTCAGCCATGCTTA 58.718 45.455 4.83 0.00 36.40 3.09
2205 2582 2.097825 GGAGAATTGTCAGCCATGCTT 58.902 47.619 4.83 0.00 36.40 3.91
2206 2583 1.005097 TGGAGAATTGTCAGCCATGCT 59.995 47.619 4.83 0.00 40.77 3.79
2207 2584 1.466856 TGGAGAATTGTCAGCCATGC 58.533 50.000 4.83 0.00 0.00 4.06
2208 2585 4.158949 TCATTTGGAGAATTGTCAGCCATG 59.841 41.667 4.83 1.79 32.50 3.66
2209 2586 4.346730 TCATTTGGAGAATTGTCAGCCAT 58.653 39.130 4.83 0.00 32.50 4.40
2210 2587 3.765381 TCATTTGGAGAATTGTCAGCCA 58.235 40.909 4.83 0.00 0.00 4.75
2211 2588 4.789012 TTCATTTGGAGAATTGTCAGCC 57.211 40.909 4.83 0.00 0.00 4.85
2212 2589 6.869913 TGAATTTCATTTGGAGAATTGTCAGC 59.130 34.615 4.83 0.00 0.00 4.26
2213 2590 8.997621 ATGAATTTCATTTGGAGAATTGTCAG 57.002 30.769 6.06 0.00 32.13 3.51
2219 2596 9.813446 GCTTCTAATGAATTTCATTTGGAGAAT 57.187 29.630 30.10 11.58 44.03 2.40
2220 2597 9.028284 AGCTTCTAATGAATTTCATTTGGAGAA 57.972 29.630 30.10 26.15 44.03 2.87
2221 2598 8.585471 AGCTTCTAATGAATTTCATTTGGAGA 57.415 30.769 30.10 22.80 44.03 3.71
2222 2599 9.298774 GAAGCTTCTAATGAATTTCATTTGGAG 57.701 33.333 25.37 25.37 44.03 3.86
2223 2600 8.805175 TGAAGCTTCTAATGAATTTCATTTGGA 58.195 29.630 25.24 18.36 44.03 3.53
2224 2601 8.991243 TGAAGCTTCTAATGAATTTCATTTGG 57.009 30.769 25.24 18.70 44.03 3.28
2241 2618 9.214953 CGAAGAAACATATTGTTATGAAGCTTC 57.785 33.333 19.89 19.89 40.14 3.86
2242 2619 8.730680 ACGAAGAAACATATTGTTATGAAGCTT 58.269 29.630 0.00 0.00 40.14 3.74
2243 2620 8.268850 ACGAAGAAACATATTGTTATGAAGCT 57.731 30.769 0.00 0.00 40.14 3.74
2244 2621 8.175069 TGACGAAGAAACATATTGTTATGAAGC 58.825 33.333 0.00 0.00 40.14 3.86
2246 2623 9.986833 CATGACGAAGAAACATATTGTTATGAA 57.013 29.630 0.00 0.00 40.14 2.57
2247 2624 9.161629 ACATGACGAAGAAACATATTGTTATGA 57.838 29.630 0.00 0.00 40.14 2.15
2248 2625 9.425893 GACATGACGAAGAAACATATTGTTATG 57.574 33.333 0.00 0.00 40.14 1.90
2249 2626 9.383519 AGACATGACGAAGAAACATATTGTTAT 57.616 29.630 0.00 0.00 40.14 1.89
2250 2627 8.771920 AGACATGACGAAGAAACATATTGTTA 57.228 30.769 0.00 0.00 40.14 2.41
2251 2628 7.672983 AGACATGACGAAGAAACATATTGTT 57.327 32.000 0.00 0.00 43.41 2.83
2252 2629 7.672983 AAGACATGACGAAGAAACATATTGT 57.327 32.000 0.00 0.00 0.00 2.71
2253 2630 8.446273 AGAAAGACATGACGAAGAAACATATTG 58.554 33.333 0.00 0.00 0.00 1.90
2254 2631 8.553459 AGAAAGACATGACGAAGAAACATATT 57.447 30.769 0.00 0.00 0.00 1.28
2255 2632 9.823647 ATAGAAAGACATGACGAAGAAACATAT 57.176 29.630 0.00 0.00 0.00 1.78
2263 2640 8.323854 CACAATGTATAGAAAGACATGACGAAG 58.676 37.037 0.00 0.00 37.60 3.79
2267 2644 7.849804 ACCACAATGTATAGAAAGACATGAC 57.150 36.000 0.00 0.00 37.60 3.06
2352 2732 9.527157 TTGTTTGAATTTTATAGGGTCATCAGA 57.473 29.630 0.00 0.00 0.00 3.27
2394 2774 8.640063 TTAGGCATATCAGAAACATGCATTAT 57.360 30.769 13.92 0.00 45.45 1.28
2395 2775 8.462589 TTTAGGCATATCAGAAACATGCATTA 57.537 30.769 13.92 2.34 45.45 1.90
2405 2786 8.038862 AGAAGATCCTTTTAGGCATATCAGAA 57.961 34.615 0.00 0.00 34.61 3.02
2407 2788 8.688747 AAAGAAGATCCTTTTAGGCATATCAG 57.311 34.615 0.00 0.00 34.61 2.90
2450 2831 9.290988 ACACACACCACATTATTATAGAAAACA 57.709 29.630 0.00 0.00 0.00 2.83
2495 2876 2.296073 TAAAACACACCACATCCCCC 57.704 50.000 0.00 0.00 0.00 5.40
2496 2877 2.959707 TGTTAAAACACACCACATCCCC 59.040 45.455 0.00 0.00 33.17 4.81
2509 2890 8.574196 AGCATGTGTCTTTATTGTGTTAAAAC 57.426 30.769 0.00 0.00 0.00 2.43
2513 2894 7.686438 ATGAGCATGTGTCTTTATTGTGTTA 57.314 32.000 0.00 0.00 0.00 2.41
2518 2899 9.821662 CATATGTATGAGCATGTGTCTTTATTG 57.178 33.333 0.00 0.00 34.60 1.90
2523 2904 4.758674 GGCATATGTATGAGCATGTGTCTT 59.241 41.667 4.29 0.00 38.80 3.01
2528 2909 7.044181 GTGTATAGGCATATGTATGAGCATGT 58.956 38.462 4.29 0.00 35.75 3.21
2531 2912 6.437162 TGAGTGTATAGGCATATGTATGAGCA 59.563 38.462 4.29 0.00 35.75 4.26
2532 2913 6.754209 GTGAGTGTATAGGCATATGTATGAGC 59.246 42.308 4.29 0.00 35.75 4.26
2544 2927 2.557056 TCATAGGCGTGAGTGTATAGGC 59.443 50.000 0.00 0.00 0.00 3.93
2558 2941 2.399611 GTGCGTGCGTTCATAGGC 59.600 61.111 0.00 0.00 35.75 3.93
2559 2942 2.695055 CGTGCGTGCGTTCATAGG 59.305 61.111 0.00 0.00 0.00 2.57
2561 2944 2.089936 GTCCGTGCGTGCGTTCATA 61.090 57.895 0.00 0.00 0.00 2.15
2576 2963 3.517612 TGCTTATAGGGATAGGGTGTCC 58.482 50.000 0.00 0.00 34.92 4.02
2577 2964 5.026790 AGATGCTTATAGGGATAGGGTGTC 58.973 45.833 0.00 0.00 0.00 3.67
2581 2968 4.624913 TGGAGATGCTTATAGGGATAGGG 58.375 47.826 0.00 0.00 0.00 3.53
2584 2971 6.665680 GTCTCTTGGAGATGCTTATAGGGATA 59.334 42.308 0.47 0.00 40.98 2.59
2586 2973 4.835615 GTCTCTTGGAGATGCTTATAGGGA 59.164 45.833 0.47 0.00 40.98 4.20
2591 2978 4.202243 GCTCAGTCTCTTGGAGATGCTTAT 60.202 45.833 0.47 0.00 40.98 1.73
2598 2985 0.038310 TCGGCTCAGTCTCTTGGAGA 59.962 55.000 0.00 0.00 36.22 3.71
2603 2990 1.203523 GATGTGTCGGCTCAGTCTCTT 59.796 52.381 0.00 0.00 0.00 2.85
2610 2997 1.550072 TCAAGATGATGTGTCGGCTCA 59.450 47.619 0.00 0.00 0.00 4.26
2619 3006 7.413438 GCAACTTCGTTAATCTCAAGATGATGT 60.413 37.037 0.00 0.00 34.49 3.06
2621 3008 6.037610 GGCAACTTCGTTAATCTCAAGATGAT 59.962 38.462 0.00 0.00 34.49 2.45
2637 3024 0.532862 AGGTGTCTGTGGCAACTTCG 60.533 55.000 0.00 0.00 27.88 3.79
2644 3031 2.559785 CCATGAAGGTGTCTGTGGC 58.440 57.895 0.00 0.00 0.00 5.01
2654 3041 1.630148 GTTCTCGTCGACCATGAAGG 58.370 55.000 10.58 0.00 45.67 3.46
2668 3055 4.236147 GTTTAGTGGAAGGAGACGTTCTC 58.764 47.826 0.00 0.00 42.66 2.87
2673 3060 1.336517 TGCGTTTAGTGGAAGGAGACG 60.337 52.381 0.00 0.00 0.00 4.18
2681 3068 2.036604 TCAGTGATGTGCGTTTAGTGGA 59.963 45.455 0.00 0.00 0.00 4.02
2684 3071 3.498397 CCTTTCAGTGATGTGCGTTTAGT 59.502 43.478 0.00 0.00 0.00 2.24
2685 3072 3.667960 GCCTTTCAGTGATGTGCGTTTAG 60.668 47.826 0.00 0.00 0.00 1.85
2696 3083 6.951198 TGGATTTATTTTAGGCCTTTCAGTGA 59.049 34.615 12.58 0.00 0.00 3.41
2728 3115 6.723298 ATTCACTCCAAAAACACCACATTA 57.277 33.333 0.00 0.00 0.00 1.90
2796 3183 6.827727 TCTTCCTTAAACTTAACTCACTGCT 58.172 36.000 0.00 0.00 0.00 4.24
2806 3193 9.275398 TCGCAACTATTTTCTTCCTTAAACTTA 57.725 29.630 0.00 0.00 0.00 2.24
2814 3201 6.877611 TCTTTTCGCAACTATTTTCTTCCT 57.122 33.333 0.00 0.00 0.00 3.36
2837 3224 6.152831 GGTAGTGCAATCCTAGGTTTGAAAAT 59.847 38.462 29.11 19.39 0.00 1.82
2842 3229 3.950397 TGGTAGTGCAATCCTAGGTTTG 58.050 45.455 23.14 23.14 0.00 2.93
2849 3236 3.055094 AGTTCGATTGGTAGTGCAATCCT 60.055 43.478 0.00 0.00 35.13 3.24
2855 3242 3.585862 TCTGAAGTTCGATTGGTAGTGC 58.414 45.455 0.00 0.00 0.00 4.40
2857 3244 7.745620 AAAAATCTGAAGTTCGATTGGTAGT 57.254 32.000 17.64 5.37 30.76 2.73
2893 3282 8.814931 ACATAATTTGACATCTTGGGAATTCAA 58.185 29.630 7.93 0.00 0.00 2.69
2898 3287 7.537596 ACAACATAATTTGACATCTTGGGAA 57.462 32.000 0.00 0.00 0.00 3.97
2900 3289 6.029607 CGACAACATAATTTGACATCTTGGG 58.970 40.000 0.00 0.00 0.00 4.12
2905 3294 6.092122 TCCTCACGACAACATAATTTGACATC 59.908 38.462 0.00 0.00 0.00 3.06
2909 3298 6.169800 TCATCCTCACGACAACATAATTTGA 58.830 36.000 0.00 0.00 0.00 2.69
2913 3302 7.630242 ATTTTCATCCTCACGACAACATAAT 57.370 32.000 0.00 0.00 0.00 1.28
2925 3314 7.537596 TTGCTAAAGGAAATTTTCATCCTCA 57.462 32.000 11.09 0.00 45.33 3.86
2934 3323 6.060788 TGCCATTGTTTGCTAAAGGAAATTT 58.939 32.000 0.00 0.00 37.67 1.82
2956 3345 3.581024 TTGAACATTGCAAGGATCTGC 57.419 42.857 19.41 0.09 42.95 4.26
2957 3346 7.429636 AAAAATTGAACATTGCAAGGATCTG 57.570 32.000 19.41 6.78 0.00 2.90
2989 3378 2.200373 TAAGAAGCTTGGCAGTTCCC 57.800 50.000 2.10 0.00 0.00 3.97
2991 3380 5.438761 TTCTTTAAGAAGCTTGGCAGTTC 57.561 39.130 2.10 0.00 32.75 3.01
2994 3383 7.719778 AAAATTTCTTTAAGAAGCTTGGCAG 57.280 32.000 2.10 0.00 35.37 4.85
3016 3405 6.869315 TTATGTTGTCACGAGGATGAAAAA 57.131 33.333 0.00 0.00 27.41 1.94
3037 3426 9.522804 AAATCAAACGTTTCTTACAGCAAATTA 57.477 25.926 11.37 0.00 0.00 1.40
3044 3433 5.277825 TGGCAAATCAAACGTTTCTTACAG 58.722 37.500 11.37 0.00 0.00 2.74
3046 3435 5.388371 GCATGGCAAATCAAACGTTTCTTAC 60.388 40.000 11.37 4.34 0.00 2.34
3054 3443 5.373262 GTTTTAAGCATGGCAAATCAAACG 58.627 37.500 0.00 0.00 0.00 3.60
3058 3447 4.888326 AGGTTTTAAGCATGGCAAATCA 57.112 36.364 0.00 0.00 0.00 2.57
3077 3466 5.471456 AGAATGCTAAAAATCCGATGCTAGG 59.529 40.000 0.00 0.00 0.00 3.02
3079 3468 7.171508 CACTAGAATGCTAAAAATCCGATGCTA 59.828 37.037 0.00 0.00 0.00 3.49
3080 3469 6.017605 CACTAGAATGCTAAAAATCCGATGCT 60.018 38.462 0.00 0.00 0.00 3.79
3082 3471 7.482654 TCACTAGAATGCTAAAAATCCGATG 57.517 36.000 0.00 0.00 0.00 3.84
3083 3472 7.012421 GGTTCACTAGAATGCTAAAAATCCGAT 59.988 37.037 0.00 0.00 35.92 4.18
3084 3473 6.315393 GGTTCACTAGAATGCTAAAAATCCGA 59.685 38.462 0.00 0.00 35.92 4.55
3085 3474 6.316390 AGGTTCACTAGAATGCTAAAAATCCG 59.684 38.462 0.00 0.00 35.92 4.18
3128 3518 4.380128 CCACCACCTAAAAATTAACGCCTC 60.380 45.833 0.00 0.00 0.00 4.70
3129 3519 3.508402 CCACCACCTAAAAATTAACGCCT 59.492 43.478 0.00 0.00 0.00 5.52
3132 3522 5.049543 TCGAACCACCACCTAAAAATTAACG 60.050 40.000 0.00 0.00 0.00 3.18
3141 3531 1.263356 CTCCTCGAACCACCACCTAA 58.737 55.000 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.