Multiple sequence alignment - TraesCS4D01G295400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G295400 chr4D 100.000 2708 0 0 1 2708 465356887 465359594 0.000000e+00 5001
1 TraesCS4D01G295400 chr4B 92.928 1004 60 7 838 1832 582112643 582113644 0.000000e+00 1450
2 TraesCS4D01G295400 chr4B 90.588 425 20 8 2281 2704 582114173 582114578 1.830000e-151 545
3 TraesCS4D01G295400 chr4B 93.171 205 13 1 597 800 582112441 582112645 1.580000e-77 300
4 TraesCS4D01G295400 chr4B 87.665 227 9 4 2068 2282 582113821 582114040 2.080000e-61 246
5 TraesCS4D01G295400 chr4A 91.131 1026 41 18 838 1835 5115407 5114404 0.000000e+00 1345
6 TraesCS4D01G295400 chr4A 90.332 331 25 2 2373 2697 5070852 5070523 6.930000e-116 427
7 TraesCS4D01G295400 chr4A 90.625 320 22 4 488 800 5115723 5115405 4.170000e-113 418
8 TraesCS4D01G295400 chr4A 92.308 208 12 1 2176 2379 5112200 5111993 2.640000e-75 292
9 TraesCS4D01G295400 chr1B 78.626 655 125 13 1012 1657 349547302 349546654 1.160000e-113 420
10 TraesCS4D01G295400 chr1B 96.522 115 4 0 1829 1943 624663025 624662911 9.900000e-45 191
11 TraesCS4D01G295400 chr1B 76.210 248 53 4 1083 1327 349830588 349830832 2.830000e-25 126
12 TraesCS4D01G295400 chr1A 77.477 666 135 13 1001 1657 337658542 337657883 4.230000e-103 385
13 TraesCS4D01G295400 chr1A 77.510 249 48 6 1083 1327 337947978 337948222 2.810000e-30 143
14 TraesCS4D01G295400 chr6A 83.333 330 52 1 998 1327 111449593 111449267 4.380000e-78 302
15 TraesCS4D01G295400 chr3D 91.509 212 14 4 278 487 70280644 70280435 3.410000e-74 289
16 TraesCS4D01G295400 chr3D 89.862 217 18 4 278 492 484804115 484803901 2.660000e-70 276
17 TraesCS4D01G295400 chr3D 82.915 199 30 4 1125 1321 482501472 482501668 2.770000e-40 176
18 TraesCS4D01G295400 chr6D 91.509 212 11 6 279 487 61170596 61170389 4.410000e-73 285
19 TraesCS4D01G295400 chr6D 90.476 210 17 3 278 487 409651818 409652024 9.550000e-70 274
20 TraesCS4D01G295400 chr6D 87.124 233 26 4 265 494 348080607 348080838 7.440000e-66 261
21 TraesCS4D01G295400 chrUn 90.698 215 13 7 278 488 234336823 234337034 2.050000e-71 279
22 TraesCS4D01G295400 chrUn 96.491 114 4 0 1822 1935 27987406 27987519 3.560000e-44 189
23 TraesCS4D01G295400 chrUn 94.958 119 5 1 1826 1943 218382245 218382127 4.600000e-43 185
24 TraesCS4D01G295400 chrUn 94.958 119 5 1 1826 1943 218399793 218399675 4.600000e-43 185
25 TraesCS4D01G295400 chr5A 90.610 213 15 4 278 488 522857436 522857227 7.380000e-71 278
26 TraesCS4D01G295400 chr2A 89.862 217 16 4 278 491 2797478 2797265 9.550000e-70 274
27 TraesCS4D01G295400 chr2A 74.230 617 124 27 1010 1605 205910923 205911525 2.710000e-55 226
28 TraesCS4D01G295400 chr5D 89.352 216 20 3 274 487 454087934 454088148 4.440000e-68 268
29 TraesCS4D01G295400 chr2D 74.264 645 129 27 1010 1632 192186455 192185826 1.250000e-58 237
30 TraesCS4D01G295400 chr7B 74.198 655 126 29 1010 1635 27974533 27973893 1.620000e-57 233
31 TraesCS4D01G295400 chr2B 74.392 617 123 27 1010 1605 248137080 248137682 5.830000e-57 231
32 TraesCS4D01G295400 chr7D 73.356 593 147 10 1013 1598 29057370 29056782 2.730000e-50 209
33 TraesCS4D01G295400 chr5B 95.763 118 4 1 1820 1937 511839795 511839679 3.560000e-44 189
34 TraesCS4D01G295400 chr5B 95.690 116 5 0 1822 1937 9228993 9229108 1.280000e-43 187
35 TraesCS4D01G295400 chr5B 94.309 123 6 1 1814 1935 145479131 145479253 1.280000e-43 187
36 TraesCS4D01G295400 chr5B 94.215 121 6 1 1816 1935 666201979 666202099 1.660000e-42 183
37 TraesCS4D01G295400 chr1D 95.726 117 4 1 1829 1945 314706654 314706769 1.280000e-43 187
38 TraesCS4D01G295400 chr3A 81.818 198 32 3 1126 1321 625405607 625405802 2.160000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G295400 chr4D 465356887 465359594 2707 False 5001.00 5001 100.000000 1 2708 1 chr4D.!!$F1 2707
1 TraesCS4D01G295400 chr4B 582112441 582114578 2137 False 635.25 1450 91.088000 597 2704 4 chr4B.!!$F1 2107
2 TraesCS4D01G295400 chr4A 5111993 5115723 3730 True 685.00 1345 91.354667 488 2379 3 chr4A.!!$R2 1891
3 TraesCS4D01G295400 chr1B 349546654 349547302 648 True 420.00 420 78.626000 1012 1657 1 chr1B.!!$R1 645
4 TraesCS4D01G295400 chr1A 337657883 337658542 659 True 385.00 385 77.477000 1001 1657 1 chr1A.!!$R1 656
5 TraesCS4D01G295400 chr2A 205910923 205911525 602 False 226.00 226 74.230000 1010 1605 1 chr2A.!!$F1 595
6 TraesCS4D01G295400 chr2D 192185826 192186455 629 True 237.00 237 74.264000 1010 1632 1 chr2D.!!$R1 622
7 TraesCS4D01G295400 chr7B 27973893 27974533 640 True 233.00 233 74.198000 1010 1635 1 chr7B.!!$R1 625
8 TraesCS4D01G295400 chr2B 248137080 248137682 602 False 231.00 231 74.392000 1010 1605 1 chr2B.!!$F1 595
9 TraesCS4D01G295400 chr7D 29056782 29057370 588 True 209.00 209 73.356000 1013 1598 1 chr7D.!!$R1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
400 401 0.041982 TAATTTCAAGGGGGTGGGGC 59.958 55.0 0.0 0.0 0.0 5.8 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1917 2001 0.038744 AGTACTCCCTCCGTTCCGAA 59.961 55.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.945481 TCAAAAGAAAATTTTGCTGATTCAGA 57.055 26.923 17.87 0.08 38.79 3.27
26 27 9.381033 TCAAAAGAAAATTTTGCTGATTCAGAA 57.619 25.926 17.87 3.67 38.79 3.02
27 28 9.991388 CAAAAGAAAATTTTGCTGATTCAGAAA 57.009 25.926 17.87 10.56 33.38 2.52
31 32 9.333724 AGAAAATTTTGCTGATTCAGAAAATGT 57.666 25.926 18.49 16.16 38.61 2.71
32 33 9.940166 GAAAATTTTGCTGATTCAGAAAATGTT 57.060 25.926 22.85 22.85 38.61 2.71
33 34 9.940166 AAAATTTTGCTGATTCAGAAAATGTTC 57.060 25.926 18.49 0.00 38.61 3.18
34 35 8.665643 AATTTTGCTGATTCAGAAAATGTTCA 57.334 26.923 18.49 5.91 38.61 3.18
35 36 7.703298 TTTTGCTGATTCAGAAAATGTTCAG 57.297 32.000 18.49 6.40 38.61 3.02
36 37 5.381174 TGCTGATTCAGAAAATGTTCAGG 57.619 39.130 17.87 0.00 39.03 3.86
37 38 5.072055 TGCTGATTCAGAAAATGTTCAGGA 58.928 37.500 17.87 6.78 39.03 3.86
38 39 5.535783 TGCTGATTCAGAAAATGTTCAGGAA 59.464 36.000 17.87 2.08 37.51 3.36
39 40 6.209986 TGCTGATTCAGAAAATGTTCAGGAAT 59.790 34.615 17.87 12.73 40.15 3.01
40 41 7.095270 GCTGATTCAGAAAATGTTCAGGAATT 58.905 34.615 17.87 2.77 38.80 2.17
41 42 7.601508 GCTGATTCAGAAAATGTTCAGGAATTT 59.398 33.333 17.87 0.00 38.80 1.82
53 54 7.831691 TGTTCAGGAATTTAAAGAACATGGA 57.168 32.000 13.14 0.13 42.35 3.41
54 55 8.421249 TGTTCAGGAATTTAAAGAACATGGAT 57.579 30.769 13.14 0.00 42.35 3.41
55 56 8.869109 TGTTCAGGAATTTAAAGAACATGGATT 58.131 29.630 13.14 0.00 42.35 3.01
56 57 9.358872 GTTCAGGAATTTAAAGAACATGGATTC 57.641 33.333 10.69 0.00 38.66 2.52
57 58 8.648698 TCAGGAATTTAAAGAACATGGATTCA 57.351 30.769 0.00 0.00 0.00 2.57
58 59 8.742777 TCAGGAATTTAAAGAACATGGATTCAG 58.257 33.333 0.00 0.00 0.00 3.02
59 60 8.742777 CAGGAATTTAAAGAACATGGATTCAGA 58.257 33.333 0.00 0.00 0.00 3.27
60 61 9.312904 AGGAATTTAAAGAACATGGATTCAGAA 57.687 29.630 0.00 0.00 0.00 3.02
61 62 9.927668 GGAATTTAAAGAACATGGATTCAGAAA 57.072 29.630 0.00 0.00 0.00 2.52
120 121 6.633325 AAAAGATCATGAGAGAAAGAGGGA 57.367 37.500 0.09 0.00 0.00 4.20
121 122 6.633325 AAAGATCATGAGAGAAAGAGGGAA 57.367 37.500 0.09 0.00 0.00 3.97
122 123 6.633325 AAGATCATGAGAGAAAGAGGGAAA 57.367 37.500 0.09 0.00 0.00 3.13
123 124 6.633325 AGATCATGAGAGAAAGAGGGAAAA 57.367 37.500 0.09 0.00 0.00 2.29
124 125 6.652053 AGATCATGAGAGAAAGAGGGAAAAG 58.348 40.000 0.09 0.00 0.00 2.27
125 126 5.171339 TCATGAGAGAAAGAGGGAAAAGG 57.829 43.478 0.00 0.00 0.00 3.11
126 127 4.846367 TCATGAGAGAAAGAGGGAAAAGGA 59.154 41.667 0.00 0.00 0.00 3.36
127 128 5.310594 TCATGAGAGAAAGAGGGAAAAGGAA 59.689 40.000 0.00 0.00 0.00 3.36
128 129 5.646692 TGAGAGAAAGAGGGAAAAGGAAA 57.353 39.130 0.00 0.00 0.00 3.13
129 130 6.206180 TGAGAGAAAGAGGGAAAAGGAAAT 57.794 37.500 0.00 0.00 0.00 2.17
130 131 7.329746 TGAGAGAAAGAGGGAAAAGGAAATA 57.670 36.000 0.00 0.00 0.00 1.40
131 132 7.755618 TGAGAGAAAGAGGGAAAAGGAAATAA 58.244 34.615 0.00 0.00 0.00 1.40
132 133 8.224720 TGAGAGAAAGAGGGAAAAGGAAATAAA 58.775 33.333 0.00 0.00 0.00 1.40
133 134 9.249053 GAGAGAAAGAGGGAAAAGGAAATAAAT 57.751 33.333 0.00 0.00 0.00 1.40
159 160 8.862325 AAAAATGAAACAAGAAAGGAAAAGGT 57.138 26.923 0.00 0.00 0.00 3.50
160 161 7.848223 AAATGAAACAAGAAAGGAAAAGGTG 57.152 32.000 0.00 0.00 0.00 4.00
161 162 6.790232 ATGAAACAAGAAAGGAAAAGGTGA 57.210 33.333 0.00 0.00 0.00 4.02
162 163 6.597832 TGAAACAAGAAAGGAAAAGGTGAA 57.402 33.333 0.00 0.00 0.00 3.18
163 164 6.630071 TGAAACAAGAAAGGAAAAGGTGAAG 58.370 36.000 0.00 0.00 0.00 3.02
164 165 6.435904 TGAAACAAGAAAGGAAAAGGTGAAGA 59.564 34.615 0.00 0.00 0.00 2.87
165 166 6.850752 AACAAGAAAGGAAAAGGTGAAGAA 57.149 33.333 0.00 0.00 0.00 2.52
166 167 6.850752 ACAAGAAAGGAAAAGGTGAAGAAA 57.149 33.333 0.00 0.00 0.00 2.52
167 168 7.239763 ACAAGAAAGGAAAAGGTGAAGAAAA 57.760 32.000 0.00 0.00 0.00 2.29
168 169 7.323420 ACAAGAAAGGAAAAGGTGAAGAAAAG 58.677 34.615 0.00 0.00 0.00 2.27
169 170 7.039011 ACAAGAAAGGAAAAGGTGAAGAAAAGT 60.039 33.333 0.00 0.00 0.00 2.66
170 171 7.101652 AGAAAGGAAAAGGTGAAGAAAAGTC 57.898 36.000 0.00 0.00 0.00 3.01
171 172 5.854010 AAGGAAAAGGTGAAGAAAAGTCC 57.146 39.130 0.00 0.00 0.00 3.85
172 173 4.215908 AGGAAAAGGTGAAGAAAAGTCCC 58.784 43.478 0.00 0.00 0.00 4.46
173 174 3.958147 GGAAAAGGTGAAGAAAAGTCCCA 59.042 43.478 0.00 0.00 0.00 4.37
174 175 4.038042 GGAAAAGGTGAAGAAAAGTCCCAG 59.962 45.833 0.00 0.00 0.00 4.45
175 176 4.519906 AAAGGTGAAGAAAAGTCCCAGA 57.480 40.909 0.00 0.00 0.00 3.86
176 177 3.493767 AGGTGAAGAAAAGTCCCAGAC 57.506 47.619 0.00 0.00 0.00 3.51
177 178 2.777692 AGGTGAAGAAAAGTCCCAGACA 59.222 45.455 0.00 0.00 34.60 3.41
178 179 3.202151 AGGTGAAGAAAAGTCCCAGACAA 59.798 43.478 0.00 0.00 34.60 3.18
179 180 3.951680 GGTGAAGAAAAGTCCCAGACAAA 59.048 43.478 0.00 0.00 34.60 2.83
180 181 4.202020 GGTGAAGAAAAGTCCCAGACAAAC 60.202 45.833 0.00 0.00 34.60 2.93
181 182 3.951680 TGAAGAAAAGTCCCAGACAAACC 59.048 43.478 0.00 0.00 34.60 3.27
182 183 3.662759 AGAAAAGTCCCAGACAAACCA 57.337 42.857 0.00 0.00 34.60 3.67
183 184 3.976015 AGAAAAGTCCCAGACAAACCAA 58.024 40.909 0.00 0.00 34.60 3.67
184 185 4.349365 AGAAAAGTCCCAGACAAACCAAA 58.651 39.130 0.00 0.00 34.60 3.28
185 186 4.775253 AGAAAAGTCCCAGACAAACCAAAA 59.225 37.500 0.00 0.00 34.60 2.44
186 187 4.736126 AAAGTCCCAGACAAACCAAAAG 57.264 40.909 0.00 0.00 34.60 2.27
187 188 3.662759 AGTCCCAGACAAACCAAAAGA 57.337 42.857 0.00 0.00 34.60 2.52
188 189 3.976015 AGTCCCAGACAAACCAAAAGAA 58.024 40.909 0.00 0.00 34.60 2.52
189 190 4.349365 AGTCCCAGACAAACCAAAAGAAA 58.651 39.130 0.00 0.00 34.60 2.52
190 191 4.775253 AGTCCCAGACAAACCAAAAGAAAA 59.225 37.500 0.00 0.00 34.60 2.29
191 192 4.868171 GTCCCAGACAAACCAAAAGAAAAC 59.132 41.667 0.00 0.00 32.09 2.43
192 193 4.528596 TCCCAGACAAACCAAAAGAAAACA 59.471 37.500 0.00 0.00 0.00 2.83
193 194 4.869861 CCCAGACAAACCAAAAGAAAACAG 59.130 41.667 0.00 0.00 0.00 3.16
194 195 4.329801 CCAGACAAACCAAAAGAAAACAGC 59.670 41.667 0.00 0.00 0.00 4.40
195 196 4.329801 CAGACAAACCAAAAGAAAACAGCC 59.670 41.667 0.00 0.00 0.00 4.85
196 197 4.222810 AGACAAACCAAAAGAAAACAGCCT 59.777 37.500 0.00 0.00 0.00 4.58
197 198 4.503910 ACAAACCAAAAGAAAACAGCCTC 58.496 39.130 0.00 0.00 0.00 4.70
198 199 4.020662 ACAAACCAAAAGAAAACAGCCTCA 60.021 37.500 0.00 0.00 0.00 3.86
199 200 4.817318 AACCAAAAGAAAACAGCCTCAA 57.183 36.364 0.00 0.00 0.00 3.02
200 201 4.817318 ACCAAAAGAAAACAGCCTCAAA 57.183 36.364 0.00 0.00 0.00 2.69
201 202 5.159273 ACCAAAAGAAAACAGCCTCAAAA 57.841 34.783 0.00 0.00 0.00 2.44
202 203 5.555966 ACCAAAAGAAAACAGCCTCAAAAA 58.444 33.333 0.00 0.00 0.00 1.94
218 219 2.981400 AAAAACCGGTACATGCGAAG 57.019 45.000 8.00 0.00 0.00 3.79
219 220 2.172851 AAAACCGGTACATGCGAAGA 57.827 45.000 8.00 0.00 0.00 2.87
220 221 2.396590 AAACCGGTACATGCGAAGAT 57.603 45.000 8.00 0.00 0.00 2.40
221 222 1.651987 AACCGGTACATGCGAAGATG 58.348 50.000 8.00 0.00 0.00 2.90
222 223 0.810031 ACCGGTACATGCGAAGATGC 60.810 55.000 4.49 0.00 0.00 3.91
223 224 0.530650 CCGGTACATGCGAAGATGCT 60.531 55.000 0.00 0.00 35.36 3.79
224 225 1.269569 CCGGTACATGCGAAGATGCTA 60.270 52.381 0.00 0.00 35.36 3.49
225 226 2.054363 CGGTACATGCGAAGATGCTAG 58.946 52.381 0.00 0.00 35.36 3.42
226 227 2.543861 CGGTACATGCGAAGATGCTAGT 60.544 50.000 0.00 0.00 35.36 2.57
227 228 3.304458 CGGTACATGCGAAGATGCTAGTA 60.304 47.826 0.00 0.00 35.36 1.82
228 229 4.616143 CGGTACATGCGAAGATGCTAGTAT 60.616 45.833 0.00 0.00 35.36 2.12
229 230 4.623167 GGTACATGCGAAGATGCTAGTATG 59.377 45.833 0.00 0.00 35.36 2.39
230 231 3.657634 ACATGCGAAGATGCTAGTATGG 58.342 45.455 0.00 0.00 35.36 2.74
231 232 2.820059 TGCGAAGATGCTAGTATGGG 57.180 50.000 0.00 0.00 35.36 4.00
232 233 1.270305 TGCGAAGATGCTAGTATGGGC 60.270 52.381 0.00 0.00 35.36 5.36
233 234 1.702886 CGAAGATGCTAGTATGGGCG 58.297 55.000 0.00 0.00 0.00 6.13
234 235 1.670087 CGAAGATGCTAGTATGGGCGG 60.670 57.143 0.00 0.00 0.00 6.13
235 236 0.687354 AAGATGCTAGTATGGGCGGG 59.313 55.000 0.00 0.00 0.00 6.13
236 237 1.376037 GATGCTAGTATGGGCGGGC 60.376 63.158 0.00 0.00 0.00 6.13
237 238 2.804828 GATGCTAGTATGGGCGGGCC 62.805 65.000 14.65 14.65 0.00 5.80
247 248 3.780357 GGCGGGCCCACTTAAAAA 58.220 55.556 24.92 0.00 0.00 1.94
248 249 2.282827 GGCGGGCCCACTTAAAAAT 58.717 52.632 24.92 0.00 0.00 1.82
249 250 0.108377 GGCGGGCCCACTTAAAAATG 60.108 55.000 24.92 1.45 0.00 2.32
250 251 0.606096 GCGGGCCCACTTAAAAATGT 59.394 50.000 24.92 0.00 0.00 2.71
251 252 1.403647 GCGGGCCCACTTAAAAATGTC 60.404 52.381 24.92 0.00 0.00 3.06
252 253 1.889829 CGGGCCCACTTAAAAATGTCA 59.110 47.619 24.92 0.00 0.00 3.58
253 254 2.094752 CGGGCCCACTTAAAAATGTCAG 60.095 50.000 24.92 0.00 0.00 3.51
254 255 2.233676 GGGCCCACTTAAAAATGTCAGG 59.766 50.000 19.95 0.00 0.00 3.86
255 256 3.161866 GGCCCACTTAAAAATGTCAGGA 58.838 45.455 0.00 0.00 0.00 3.86
256 257 3.056821 GGCCCACTTAAAAATGTCAGGAC 60.057 47.826 0.00 0.00 0.00 3.85
257 258 3.365969 GCCCACTTAAAAATGTCAGGACG 60.366 47.826 0.00 0.00 0.00 4.79
258 259 3.818773 CCCACTTAAAAATGTCAGGACGT 59.181 43.478 0.00 0.00 0.00 4.34
259 260 4.320202 CCCACTTAAAAATGTCAGGACGTG 60.320 45.833 0.00 0.00 0.00 4.49
260 261 4.320202 CCACTTAAAAATGTCAGGACGTGG 60.320 45.833 0.00 0.00 33.20 4.94
261 262 3.818773 ACTTAAAAATGTCAGGACGTGGG 59.181 43.478 0.00 0.00 0.00 4.61
262 263 2.358322 AAAAATGTCAGGACGTGGGT 57.642 45.000 0.00 0.00 0.00 4.51
263 264 1.604604 AAAATGTCAGGACGTGGGTG 58.395 50.000 0.00 0.00 0.00 4.61
264 265 0.889186 AAATGTCAGGACGTGGGTGC 60.889 55.000 0.00 0.00 34.21 5.01
265 266 2.748058 AATGTCAGGACGTGGGTGCC 62.748 60.000 0.00 0.00 34.61 5.01
266 267 4.699522 GTCAGGACGTGGGTGCCC 62.700 72.222 0.00 0.00 34.61 5.36
267 268 4.954118 TCAGGACGTGGGTGCCCT 62.954 66.667 8.91 0.00 34.61 5.19
268 269 4.704833 CAGGACGTGGGTGCCCTG 62.705 72.222 8.91 0.00 40.01 4.45
270 271 3.315949 GGACGTGGGTGCCCTGTA 61.316 66.667 8.91 0.00 36.94 2.74
271 272 2.047560 GACGTGGGTGCCCTGTAC 60.048 66.667 8.91 0.00 36.94 2.90
272 273 3.927163 GACGTGGGTGCCCTGTACG 62.927 68.421 14.52 14.52 40.30 3.67
274 275 4.016706 GTGGGTGCCCTGTACGCT 62.017 66.667 8.91 0.00 36.94 5.07
275 276 3.702048 TGGGTGCCCTGTACGCTC 61.702 66.667 8.91 0.00 36.94 5.03
276 277 4.468689 GGGTGCCCTGTACGCTCC 62.469 72.222 0.00 4.34 38.81 4.70
277 278 4.814294 GGTGCCCTGTACGCTCCG 62.814 72.222 0.00 0.00 30.88 4.63
278 279 4.814294 GTGCCCTGTACGCTCCGG 62.814 72.222 0.00 0.00 0.00 5.14
280 281 3.537874 GCCCTGTACGCTCCGGAT 61.538 66.667 3.57 0.00 0.00 4.18
281 282 2.728817 CCCTGTACGCTCCGGATC 59.271 66.667 3.57 0.00 0.00 3.36
282 283 2.728817 CCTGTACGCTCCGGATCC 59.271 66.667 3.57 0.00 0.00 3.36
283 284 2.331805 CTGTACGCTCCGGATCCG 59.668 66.667 27.65 27.65 39.44 4.18
294 295 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
295 296 2.899339 GATCCGGCTTGCCTGCTC 60.899 66.667 10.12 0.76 0.00 4.26
296 297 4.496336 ATCCGGCTTGCCTGCTCC 62.496 66.667 10.12 0.00 0.00 4.70
300 301 4.811364 GGCTTGCCTGCTCCCTCC 62.811 72.222 4.11 0.00 0.00 4.30
301 302 4.811364 GCTTGCCTGCTCCCTCCC 62.811 72.222 0.00 0.00 0.00 4.30
302 303 4.120755 CTTGCCTGCTCCCTCCCC 62.121 72.222 0.00 0.00 0.00 4.81
304 305 4.765970 TGCCTGCTCCCTCCCCAT 62.766 66.667 0.00 0.00 0.00 4.00
305 306 4.201122 GCCTGCTCCCTCCCCATG 62.201 72.222 0.00 0.00 0.00 3.66
306 307 4.201122 CCTGCTCCCTCCCCATGC 62.201 72.222 0.00 0.00 0.00 4.06
307 308 3.095163 CTGCTCCCTCCCCATGCT 61.095 66.667 0.00 0.00 0.00 3.79
308 309 2.614969 TGCTCCCTCCCCATGCTT 60.615 61.111 0.00 0.00 0.00 3.91
309 310 2.194326 GCTCCCTCCCCATGCTTC 59.806 66.667 0.00 0.00 0.00 3.86
310 311 2.922234 CTCCCTCCCCATGCTTCC 59.078 66.667 0.00 0.00 0.00 3.46
311 312 2.002977 CTCCCTCCCCATGCTTCCA 61.003 63.158 0.00 0.00 0.00 3.53
312 313 1.309013 TCCCTCCCCATGCTTCCAT 60.309 57.895 0.00 0.00 0.00 3.41
313 314 1.152368 CCCTCCCCATGCTTCCATC 59.848 63.158 0.00 0.00 0.00 3.51
314 315 1.358830 CCCTCCCCATGCTTCCATCT 61.359 60.000 0.00 0.00 0.00 2.90
315 316 0.178998 CCTCCCCATGCTTCCATCTG 60.179 60.000 0.00 0.00 0.00 2.90
316 317 0.549950 CTCCCCATGCTTCCATCTGT 59.450 55.000 0.00 0.00 0.00 3.41
317 318 0.256752 TCCCCATGCTTCCATCTGTG 59.743 55.000 0.00 0.00 0.00 3.66
318 319 1.389609 CCCCATGCTTCCATCTGTGC 61.390 60.000 0.00 0.00 0.00 4.57
319 320 0.395311 CCCATGCTTCCATCTGTGCT 60.395 55.000 0.00 0.00 0.00 4.40
320 321 1.022735 CCATGCTTCCATCTGTGCTC 58.977 55.000 0.00 0.00 0.00 4.26
321 322 1.022735 CATGCTTCCATCTGTGCTCC 58.977 55.000 0.00 0.00 0.00 4.70
322 323 0.106819 ATGCTTCCATCTGTGCTCCC 60.107 55.000 0.00 0.00 0.00 4.30
323 324 1.300963 GCTTCCATCTGTGCTCCCA 59.699 57.895 0.00 0.00 0.00 4.37
324 325 1.028868 GCTTCCATCTGTGCTCCCAC 61.029 60.000 0.00 0.00 42.40 4.61
325 326 0.393537 CTTCCATCTGTGCTCCCACC 60.394 60.000 0.00 0.00 41.35 4.61
326 327 0.842030 TTCCATCTGTGCTCCCACCT 60.842 55.000 0.00 0.00 41.35 4.00
327 328 1.222936 CCATCTGTGCTCCCACCTC 59.777 63.158 0.00 0.00 41.35 3.85
328 329 1.556373 CCATCTGTGCTCCCACCTCA 61.556 60.000 0.00 0.00 41.35 3.86
329 330 0.545171 CATCTGTGCTCCCACCTCAT 59.455 55.000 0.00 0.00 41.35 2.90
330 331 0.835941 ATCTGTGCTCCCACCTCATC 59.164 55.000 0.00 0.00 41.35 2.92
331 332 0.252421 TCTGTGCTCCCACCTCATCT 60.252 55.000 0.00 0.00 41.35 2.90
332 333 0.617413 CTGTGCTCCCACCTCATCTT 59.383 55.000 0.00 0.00 41.35 2.40
333 334 1.833630 CTGTGCTCCCACCTCATCTTA 59.166 52.381 0.00 0.00 41.35 2.10
334 335 2.437281 CTGTGCTCCCACCTCATCTTAT 59.563 50.000 0.00 0.00 41.35 1.73
335 336 2.171237 TGTGCTCCCACCTCATCTTATG 59.829 50.000 0.00 0.00 41.35 1.90
336 337 1.770658 TGCTCCCACCTCATCTTATGG 59.229 52.381 0.00 0.00 0.00 2.74
337 338 1.544314 GCTCCCACCTCATCTTATGGC 60.544 57.143 0.00 0.00 0.00 4.40
338 339 2.053244 CTCCCACCTCATCTTATGGCT 58.947 52.381 0.00 0.00 0.00 4.75
339 340 1.770658 TCCCACCTCATCTTATGGCTG 59.229 52.381 0.00 0.00 0.00 4.85
340 341 1.492176 CCCACCTCATCTTATGGCTGT 59.508 52.381 0.00 0.00 0.00 4.40
341 342 2.486191 CCCACCTCATCTTATGGCTGTC 60.486 54.545 0.00 0.00 0.00 3.51
342 343 2.437281 CCACCTCATCTTATGGCTGTCT 59.563 50.000 0.00 0.00 0.00 3.41
343 344 3.118112 CCACCTCATCTTATGGCTGTCTT 60.118 47.826 0.00 0.00 0.00 3.01
344 345 4.521146 CACCTCATCTTATGGCTGTCTTT 58.479 43.478 0.00 0.00 0.00 2.52
345 346 4.946157 CACCTCATCTTATGGCTGTCTTTT 59.054 41.667 0.00 0.00 0.00 2.27
346 347 5.416952 CACCTCATCTTATGGCTGTCTTTTT 59.583 40.000 0.00 0.00 0.00 1.94
374 375 9.449719 TCCTTTTGTCCTTTCTAATCTAATCAC 57.550 33.333 0.00 0.00 0.00 3.06
375 376 8.678199 CCTTTTGTCCTTTCTAATCTAATCACC 58.322 37.037 0.00 0.00 0.00 4.02
376 377 8.575649 TTTTGTCCTTTCTAATCTAATCACCC 57.424 34.615 0.00 0.00 0.00 4.61
377 378 6.248569 TGTCCTTTCTAATCTAATCACCCC 57.751 41.667 0.00 0.00 0.00 4.95
378 379 5.132144 TGTCCTTTCTAATCTAATCACCCCC 59.868 44.000 0.00 0.00 0.00 5.40
398 399 2.159179 CCTAATTTCAAGGGGGTGGG 57.841 55.000 0.00 0.00 0.00 4.61
399 400 1.342975 CCTAATTTCAAGGGGGTGGGG 60.343 57.143 0.00 0.00 0.00 4.96
400 401 0.041982 TAATTTCAAGGGGGTGGGGC 59.958 55.000 0.00 0.00 0.00 5.80
401 402 2.763988 AATTTCAAGGGGGTGGGGCC 62.764 60.000 0.00 0.00 0.00 5.80
415 416 2.124445 GGCCGGGCCTTATTTCGT 60.124 61.111 30.86 0.00 46.69 3.85
416 417 1.751544 GGCCGGGCCTTATTTCGTT 60.752 57.895 30.86 0.00 46.69 3.85
417 418 1.721664 GGCCGGGCCTTATTTCGTTC 61.722 60.000 30.86 0.00 46.69 3.95
418 419 1.721664 GCCGGGCCTTATTTCGTTCC 61.722 60.000 8.12 0.00 0.00 3.62
419 420 0.393267 CCGGGCCTTATTTCGTTCCA 60.393 55.000 0.84 0.00 0.00 3.53
420 421 1.455248 CGGGCCTTATTTCGTTCCAA 58.545 50.000 0.84 0.00 0.00 3.53
421 422 2.021457 CGGGCCTTATTTCGTTCCAAT 58.979 47.619 0.84 0.00 0.00 3.16
422 423 2.032924 CGGGCCTTATTTCGTTCCAATC 59.967 50.000 0.84 0.00 0.00 2.67
423 424 3.020984 GGGCCTTATTTCGTTCCAATCA 58.979 45.455 0.84 0.00 0.00 2.57
424 425 3.445805 GGGCCTTATTTCGTTCCAATCAA 59.554 43.478 0.84 0.00 0.00 2.57
425 426 4.081917 GGGCCTTATTTCGTTCCAATCAAA 60.082 41.667 0.84 0.00 0.00 2.69
426 427 5.395214 GGGCCTTATTTCGTTCCAATCAAAT 60.395 40.000 0.84 0.00 0.00 2.32
427 428 5.748630 GGCCTTATTTCGTTCCAATCAAATC 59.251 40.000 0.00 0.00 0.00 2.17
428 429 6.329496 GCCTTATTTCGTTCCAATCAAATCA 58.671 36.000 0.00 0.00 0.00 2.57
429 430 6.811170 GCCTTATTTCGTTCCAATCAAATCAA 59.189 34.615 0.00 0.00 0.00 2.57
430 431 7.009540 GCCTTATTTCGTTCCAATCAAATCAAG 59.990 37.037 0.00 0.00 0.00 3.02
431 432 7.009540 CCTTATTTCGTTCCAATCAAATCAAGC 59.990 37.037 0.00 0.00 0.00 4.01
432 433 3.848272 TCGTTCCAATCAAATCAAGCC 57.152 42.857 0.00 0.00 0.00 4.35
433 434 3.153130 TCGTTCCAATCAAATCAAGCCA 58.847 40.909 0.00 0.00 0.00 4.75
434 435 3.057596 TCGTTCCAATCAAATCAAGCCAC 60.058 43.478 0.00 0.00 0.00 5.01
435 436 3.244976 GTTCCAATCAAATCAAGCCACG 58.755 45.455 0.00 0.00 0.00 4.94
436 437 2.513753 TCCAATCAAATCAAGCCACGT 58.486 42.857 0.00 0.00 0.00 4.49
437 438 3.680490 TCCAATCAAATCAAGCCACGTA 58.320 40.909 0.00 0.00 0.00 3.57
438 439 4.269183 TCCAATCAAATCAAGCCACGTAT 58.731 39.130 0.00 0.00 0.00 3.06
439 440 4.096231 TCCAATCAAATCAAGCCACGTATG 59.904 41.667 0.00 0.00 0.00 2.39
440 441 3.698029 ATCAAATCAAGCCACGTATGC 57.302 42.857 1.17 1.17 0.00 3.14
441 442 1.742831 TCAAATCAAGCCACGTATGCC 59.257 47.619 5.69 0.00 0.00 4.40
442 443 0.732571 AAATCAAGCCACGTATGCCG 59.267 50.000 5.69 0.00 44.03 5.69
443 444 1.095228 AATCAAGCCACGTATGCCGG 61.095 55.000 0.00 0.00 42.24 6.13
444 445 1.966901 ATCAAGCCACGTATGCCGGA 61.967 55.000 5.05 4.68 42.24 5.14
445 446 2.173669 CAAGCCACGTATGCCGGAG 61.174 63.158 5.05 0.00 42.24 4.63
446 447 4.530857 AGCCACGTATGCCGGAGC 62.531 66.667 5.05 0.00 42.24 4.70
455 456 4.881440 TGCCGGAGCATGGATGGC 62.881 66.667 5.05 0.00 46.52 4.40
459 460 4.881440 GGAGCATGGATGGCCGCA 62.881 66.667 0.00 0.00 36.79 5.69
460 461 3.589881 GAGCATGGATGGCCGCAC 61.590 66.667 0.00 0.00 36.79 5.34
484 485 2.358003 GCAGCAGGCAAGTCTCGT 60.358 61.111 0.00 0.00 43.97 4.18
485 486 2.386660 GCAGCAGGCAAGTCTCGTC 61.387 63.158 0.00 0.00 43.97 4.20
486 487 1.739562 CAGCAGGCAAGTCTCGTCC 60.740 63.158 0.00 0.00 0.00 4.79
508 509 3.917760 GCTCCGCACCGCCTATCT 61.918 66.667 0.00 0.00 0.00 1.98
612 619 5.046807 TGTGAGTTTAGTAACTTCCCTAGCC 60.047 44.000 0.00 0.00 44.51 3.93
648 655 1.607148 GGTAGCCGGCCATACATTTTC 59.393 52.381 26.15 3.08 0.00 2.29
719 727 3.299340 TTAGTCAAGTCAACTCCTCGC 57.701 47.619 0.00 0.00 0.00 5.03
726 734 3.904136 AGTCAACTCCTCGCAAAAATG 57.096 42.857 0.00 0.00 0.00 2.32
738 746 7.374272 TCCTCGCAAAAATGTAATCAAATGAA 58.626 30.769 0.00 0.00 0.00 2.57
786 794 5.291971 AGTTTTACTGATTTGACCGTACGT 58.708 37.500 15.21 2.02 0.00 3.57
795 803 6.155136 TGATTTGACCGTACGTACACATTTA 58.845 36.000 24.50 6.74 0.00 1.40
800 808 6.644775 TGACCGTACGTACACATTTAAAAAC 58.355 36.000 24.50 0.00 0.00 2.43
801 809 5.665232 ACCGTACGTACACATTTAAAAACG 58.335 37.500 24.50 8.93 36.48 3.60
802 810 5.072169 CCGTACGTACACATTTAAAAACGG 58.928 41.667 24.50 14.09 39.98 4.44
803 811 4.545430 CGTACGTACACATTTAAAAACGGC 59.455 41.667 24.50 0.00 34.81 5.68
804 812 4.548991 ACGTACACATTTAAAAACGGCA 57.451 36.364 12.05 0.00 34.81 5.69
805 813 4.281264 ACGTACACATTTAAAAACGGCAC 58.719 39.130 12.05 0.00 34.81 5.01
806 814 4.201891 ACGTACACATTTAAAAACGGCACA 60.202 37.500 12.05 0.00 34.81 4.57
807 815 4.912766 CGTACACATTTAAAAACGGCACAT 59.087 37.500 0.00 0.00 0.00 3.21
808 816 5.399892 CGTACACATTTAAAAACGGCACATT 59.600 36.000 0.00 0.00 0.00 2.71
809 817 6.577800 CGTACACATTTAAAAACGGCACATTA 59.422 34.615 0.00 0.00 0.00 1.90
810 818 7.271653 CGTACACATTTAAAAACGGCACATTAT 59.728 33.333 0.00 0.00 0.00 1.28
811 819 9.557338 GTACACATTTAAAAACGGCACATTATA 57.443 29.630 0.00 0.00 0.00 0.98
812 820 8.455598 ACACATTTAAAAACGGCACATTATAC 57.544 30.769 0.00 0.00 0.00 1.47
813 821 8.082852 ACACATTTAAAAACGGCACATTATACA 58.917 29.630 0.00 0.00 0.00 2.29
814 822 9.081997 CACATTTAAAAACGGCACATTATACAT 57.918 29.630 0.00 0.00 0.00 2.29
815 823 9.081997 ACATTTAAAAACGGCACATTATACATG 57.918 29.630 0.00 0.00 0.00 3.21
816 824 9.081997 CATTTAAAAACGGCACATTATACATGT 57.918 29.630 2.69 2.69 0.00 3.21
820 828 8.455598 AAAAACGGCACATTATACATGTAAAC 57.544 30.769 10.14 0.00 0.00 2.01
821 829 5.398176 ACGGCACATTATACATGTAAACG 57.602 39.130 10.14 8.15 0.00 3.60
822 830 4.871557 ACGGCACATTATACATGTAAACGT 59.128 37.500 10.14 8.72 33.38 3.99
823 831 5.352016 ACGGCACATTATACATGTAAACGTT 59.648 36.000 10.14 0.00 33.99 3.99
824 832 6.534436 ACGGCACATTATACATGTAAACGTTA 59.466 34.615 10.14 0.00 33.99 3.18
825 833 6.842282 CGGCACATTATACATGTAAACGTTAC 59.158 38.462 10.14 1.01 0.00 2.50
826 834 7.254185 CGGCACATTATACATGTAAACGTTACT 60.254 37.037 10.14 0.00 0.00 2.24
827 835 8.392612 GGCACATTATACATGTAAACGTTACTT 58.607 33.333 10.14 0.00 0.00 2.24
828 836 9.205916 GCACATTATACATGTAAACGTTACTTG 57.794 33.333 10.14 10.83 0.00 3.16
829 837 9.697250 CACATTATACATGTAAACGTTACTTGG 57.303 33.333 10.14 0.00 0.00 3.61
830 838 8.392612 ACATTATACATGTAAACGTTACTTGGC 58.607 33.333 10.14 0.00 0.00 4.52
831 839 3.799137 ACATGTAAACGTTACTTGGCG 57.201 42.857 0.00 0.00 0.00 5.69
832 840 2.096119 ACATGTAAACGTTACTTGGCGC 60.096 45.455 0.00 0.00 0.00 6.53
833 841 0.507785 TGTAAACGTTACTTGGCGCG 59.492 50.000 0.00 0.00 0.00 6.86
834 842 0.786806 GTAAACGTTACTTGGCGCGC 60.787 55.000 25.94 25.94 0.00 6.86
835 843 1.220169 TAAACGTTACTTGGCGCGCA 61.220 50.000 34.42 16.55 0.00 6.09
836 844 1.847890 AAACGTTACTTGGCGCGCAT 61.848 50.000 34.42 17.21 0.00 4.73
837 845 1.015085 AACGTTACTTGGCGCGCATA 61.015 50.000 34.42 18.86 0.00 3.14
838 846 1.015085 ACGTTACTTGGCGCGCATAA 61.015 50.000 34.42 24.71 0.00 1.90
848 856 2.000323 CGCGCATAAAGCATCACGC 61.000 57.895 8.75 0.00 46.13 5.34
867 875 2.604614 CGCATGACGGATCGACTGATTA 60.605 50.000 0.00 0.00 38.44 1.75
868 876 2.726760 GCATGACGGATCGACTGATTAC 59.273 50.000 0.00 0.00 34.09 1.89
877 885 1.672854 CGACTGATTACCGCCTCCCA 61.673 60.000 0.00 0.00 0.00 4.37
902 910 2.892852 CCCAACCCAAGCACCATATATG 59.107 50.000 5.68 5.68 0.00 1.78
906 914 1.888512 CCCAAGCACCATATATGCACC 59.111 52.381 7.24 0.00 45.92 5.01
944 980 4.993029 TCCCAAACAAAACACAAGGTAG 57.007 40.909 0.00 0.00 0.00 3.18
945 981 4.601084 TCCCAAACAAAACACAAGGTAGA 58.399 39.130 0.00 0.00 0.00 2.59
946 982 5.017490 TCCCAAACAAAACACAAGGTAGAA 58.983 37.500 0.00 0.00 0.00 2.10
947 983 5.480772 TCCCAAACAAAACACAAGGTAGAAA 59.519 36.000 0.00 0.00 0.00 2.52
948 984 5.810074 CCCAAACAAAACACAAGGTAGAAAG 59.190 40.000 0.00 0.00 0.00 2.62
949 985 6.350612 CCCAAACAAAACACAAGGTAGAAAGA 60.351 38.462 0.00 0.00 0.00 2.52
950 986 6.751888 CCAAACAAAACACAAGGTAGAAAGAG 59.248 38.462 0.00 0.00 0.00 2.85
951 987 5.500645 ACAAAACACAAGGTAGAAAGAGC 57.499 39.130 0.00 0.00 0.00 4.09
952 988 4.338400 ACAAAACACAAGGTAGAAAGAGCC 59.662 41.667 0.00 0.00 0.00 4.70
953 989 3.857157 AACACAAGGTAGAAAGAGCCA 57.143 42.857 0.00 0.00 0.00 4.75
954 990 3.857157 ACACAAGGTAGAAAGAGCCAA 57.143 42.857 0.00 0.00 0.00 4.52
955 991 4.164843 ACACAAGGTAGAAAGAGCCAAA 57.835 40.909 0.00 0.00 0.00 3.28
956 992 3.883489 ACACAAGGTAGAAAGAGCCAAAC 59.117 43.478 0.00 0.00 0.00 2.93
957 993 3.253432 CACAAGGTAGAAAGAGCCAAACC 59.747 47.826 0.00 0.00 0.00 3.27
958 994 3.138468 ACAAGGTAGAAAGAGCCAAACCT 59.862 43.478 0.00 0.00 38.98 3.50
959 995 4.145052 CAAGGTAGAAAGAGCCAAACCTT 58.855 43.478 0.00 0.00 45.75 3.50
960 996 5.163131 ACAAGGTAGAAAGAGCCAAACCTTA 60.163 40.000 4.37 0.00 43.64 2.69
961 997 5.578157 AGGTAGAAAGAGCCAAACCTTAA 57.422 39.130 0.00 0.00 33.59 1.85
962 998 5.314529 AGGTAGAAAGAGCCAAACCTTAAC 58.685 41.667 0.00 0.00 33.59 2.01
963 999 5.067954 GGTAGAAAGAGCCAAACCTTAACA 58.932 41.667 0.00 0.00 0.00 2.41
969 1005 5.966742 AGAGCCAAACCTTAACAAATCTC 57.033 39.130 0.00 0.00 0.00 2.75
983 1019 4.067896 ACAAATCTCACAAGCTACACAGG 58.932 43.478 0.00 0.00 0.00 4.00
996 1032 0.767375 ACACAGGCACAATCCAGTCT 59.233 50.000 0.00 0.00 0.00 3.24
1401 1458 0.179100 CGATGACGGAGATGCTGGTT 60.179 55.000 0.00 0.00 35.72 3.67
1677 1740 1.078848 GATCAGGCACGGACAAGCT 60.079 57.895 0.00 0.00 33.98 3.74
1709 1781 6.509418 TTCAACTTCAAACAACAAGTAGCT 57.491 33.333 0.00 0.00 32.36 3.32
1710 1782 7.618502 TTCAACTTCAAACAACAAGTAGCTA 57.381 32.000 0.00 0.00 32.36 3.32
1712 1784 6.821665 TCAACTTCAAACAACAAGTAGCTAGT 59.178 34.615 0.00 0.00 32.36 2.57
1713 1785 6.846325 ACTTCAAACAACAAGTAGCTAGTC 57.154 37.500 0.44 0.00 30.80 2.59
1714 1786 5.462398 ACTTCAAACAACAAGTAGCTAGTCG 59.538 40.000 0.44 0.00 30.80 4.18
1735 1807 0.107703 CATGGTGGCATGACCTACGT 60.108 55.000 0.00 0.00 40.22 3.57
1737 1809 1.295423 GGTGGCATGACCTACGTGT 59.705 57.895 0.00 0.00 40.22 4.49
1739 1811 0.320421 GTGGCATGACCTACGTGTGT 60.320 55.000 0.00 0.00 40.22 3.72
1764 1842 2.027653 TGTGTGTGAACTGTGAAGTGGA 60.028 45.455 0.00 0.00 0.00 4.02
1789 1873 3.571571 GCCGGTGTTTACCTTTTGATTC 58.428 45.455 1.90 0.00 45.22 2.52
1825 1909 4.189231 GTCAGCGGGTTGATGTAATACTT 58.811 43.478 0.00 0.00 34.90 2.24
1826 1910 5.105269 TGTCAGCGGGTTGATGTAATACTTA 60.105 40.000 0.00 0.00 34.90 2.24
1827 1911 5.233689 GTCAGCGGGTTGATGTAATACTTAC 59.766 44.000 0.00 0.00 34.90 2.34
1828 1912 5.128171 TCAGCGGGTTGATGTAATACTTACT 59.872 40.000 0.00 0.00 37.06 2.24
1829 1913 6.321945 TCAGCGGGTTGATGTAATACTTACTA 59.678 38.462 0.00 0.00 37.06 1.82
1830 1914 6.420008 CAGCGGGTTGATGTAATACTTACTAC 59.580 42.308 0.00 0.00 37.06 2.73
1831 1915 6.323225 AGCGGGTTGATGTAATACTTACTACT 59.677 38.462 0.00 0.00 37.06 2.57
1832 1916 6.640092 GCGGGTTGATGTAATACTTACTACTC 59.360 42.308 0.00 0.00 37.06 2.59
1833 1917 7.144000 CGGGTTGATGTAATACTTACTACTCC 58.856 42.308 0.00 0.00 37.06 3.85
1834 1918 7.014038 CGGGTTGATGTAATACTTACTACTCCT 59.986 40.741 0.00 0.00 37.06 3.69
1835 1919 8.702819 GGGTTGATGTAATACTTACTACTCCTT 58.297 37.037 0.00 0.00 37.06 3.36
1839 1923 9.182214 TGATGTAATACTTACTACTCCTTTCGT 57.818 33.333 0.00 0.00 37.06 3.85
1840 1924 9.662545 GATGTAATACTTACTACTCCTTTCGTC 57.337 37.037 0.00 0.00 37.06 4.20
1841 1925 7.989826 TGTAATACTTACTACTCCTTTCGTCC 58.010 38.462 0.00 0.00 37.06 4.79
1842 1926 6.462552 AATACTTACTACTCCTTTCGTCCC 57.537 41.667 0.00 0.00 0.00 4.46
1843 1927 3.771216 ACTTACTACTCCTTTCGTCCCA 58.229 45.455 0.00 0.00 0.00 4.37
1844 1928 4.154942 ACTTACTACTCCTTTCGTCCCAA 58.845 43.478 0.00 0.00 0.00 4.12
1845 1929 4.590222 ACTTACTACTCCTTTCGTCCCAAA 59.410 41.667 0.00 0.00 0.00 3.28
1846 1930 5.247792 ACTTACTACTCCTTTCGTCCCAAAT 59.752 40.000 0.00 0.00 0.00 2.32
1847 1931 4.635699 ACTACTCCTTTCGTCCCAAATT 57.364 40.909 0.00 0.00 0.00 1.82
1848 1932 5.750352 ACTACTCCTTTCGTCCCAAATTA 57.250 39.130 0.00 0.00 0.00 1.40
1849 1933 5.485620 ACTACTCCTTTCGTCCCAAATTAC 58.514 41.667 0.00 0.00 0.00 1.89
1850 1934 4.635699 ACTCCTTTCGTCCCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
1851 1935 4.576879 ACTCCTTTCGTCCCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
1852 1936 3.592059 TCCTTTCGTCCCAAATTACTCG 58.408 45.455 0.00 0.00 0.00 4.18
1853 1937 3.007182 TCCTTTCGTCCCAAATTACTCGT 59.993 43.478 0.00 0.00 0.00 4.18
1854 1938 3.370061 CCTTTCGTCCCAAATTACTCGTC 59.630 47.826 0.00 0.00 0.00 4.20
1855 1939 2.267188 TCGTCCCAAATTACTCGTCG 57.733 50.000 0.00 0.00 0.00 5.12
1856 1940 0.643820 CGTCCCAAATTACTCGTCGC 59.356 55.000 0.00 0.00 0.00 5.19
1857 1941 1.734707 CGTCCCAAATTACTCGTCGCT 60.735 52.381 0.00 0.00 0.00 4.93
1858 1942 1.659098 GTCCCAAATTACTCGTCGCTG 59.341 52.381 0.00 0.00 0.00 5.18
1859 1943 1.546923 TCCCAAATTACTCGTCGCTGA 59.453 47.619 0.00 0.00 0.00 4.26
1860 1944 2.028839 TCCCAAATTACTCGTCGCTGAA 60.029 45.455 0.00 0.00 0.00 3.02
1861 1945 2.739913 CCCAAATTACTCGTCGCTGAAA 59.260 45.455 0.00 0.00 0.00 2.69
1862 1946 3.374058 CCCAAATTACTCGTCGCTGAAAT 59.626 43.478 0.00 0.00 0.00 2.17
1863 1947 4.334443 CCAAATTACTCGTCGCTGAAATG 58.666 43.478 0.00 0.00 0.00 2.32
1864 1948 4.334443 CAAATTACTCGTCGCTGAAATGG 58.666 43.478 0.00 0.00 0.00 3.16
1865 1949 3.520290 ATTACTCGTCGCTGAAATGGA 57.480 42.857 0.00 0.00 0.00 3.41
1866 1950 3.520290 TTACTCGTCGCTGAAATGGAT 57.480 42.857 0.00 0.00 0.00 3.41
1867 1951 1.645034 ACTCGTCGCTGAAATGGATG 58.355 50.000 0.00 0.00 0.00 3.51
1868 1952 1.066858 ACTCGTCGCTGAAATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
1869 1953 2.165641 ACTCGTCGCTGAAATGGATGTA 59.834 45.455 0.00 0.00 0.00 2.29
1870 1954 3.181475 ACTCGTCGCTGAAATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
1871 1955 3.381045 TCGTCGCTGAAATGGATGTATC 58.619 45.455 0.00 0.00 0.00 2.24
1872 1956 3.068165 TCGTCGCTGAAATGGATGTATCT 59.932 43.478 0.00 0.00 0.00 1.98
1873 1957 4.277423 TCGTCGCTGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 0.00 1.98
1874 1958 4.618912 CGTCGCTGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 0.00 2.43
1875 1959 5.562890 CGTCGCTGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 0.00 2.43
1876 1960 6.216569 GTCGCTGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 0.00 2.10
1877 1961 6.144724 GTCGCTGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 0.00 3.01
1878 1962 6.040955 TCGCTGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
1879 1963 7.230712 TCGCTGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
1880 1964 7.867909 CGCTGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
1881 1965 9.547753 GCTGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
1907 1991 5.955488 ACATCTAGATACATCCATACGTGC 58.045 41.667 4.54 0.00 0.00 5.34
1908 1992 4.680171 TCTAGATACATCCATACGTGCG 57.320 45.455 0.00 0.00 0.00 5.34
1909 1993 4.320870 TCTAGATACATCCATACGTGCGA 58.679 43.478 0.00 0.00 0.00 5.10
1910 1994 3.284323 AGATACATCCATACGTGCGAC 57.716 47.619 0.00 0.00 0.00 5.19
1911 1995 2.621526 AGATACATCCATACGTGCGACA 59.378 45.455 0.00 0.00 0.00 4.35
1912 1996 2.943449 TACATCCATACGTGCGACAA 57.057 45.000 0.00 0.00 0.00 3.18
1913 1997 1.640428 ACATCCATACGTGCGACAAG 58.360 50.000 0.00 0.00 0.00 3.16
1914 1998 1.067142 ACATCCATACGTGCGACAAGT 60.067 47.619 0.00 0.00 0.00 3.16
1915 1999 2.164827 ACATCCATACGTGCGACAAGTA 59.835 45.455 0.00 7.72 33.49 2.24
1916 2000 3.183754 CATCCATACGTGCGACAAGTAA 58.816 45.455 0.00 0.00 32.82 2.24
1917 2001 3.513680 TCCATACGTGCGACAAGTAAT 57.486 42.857 0.00 0.00 32.82 1.89
1918 2002 3.852286 TCCATACGTGCGACAAGTAATT 58.148 40.909 0.00 0.00 32.82 1.40
1919 2003 3.861113 TCCATACGTGCGACAAGTAATTC 59.139 43.478 0.00 0.00 32.82 2.17
1920 2004 3.301579 CCATACGTGCGACAAGTAATTCG 60.302 47.826 0.00 0.00 32.82 3.34
1921 2005 1.065358 ACGTGCGACAAGTAATTCGG 58.935 50.000 0.00 0.00 35.73 4.30
1922 2006 1.336148 ACGTGCGACAAGTAATTCGGA 60.336 47.619 0.00 0.00 35.73 4.55
1923 2007 1.722464 CGTGCGACAAGTAATTCGGAA 59.278 47.619 0.00 0.00 37.32 4.30
1924 2008 2.471749 CGTGCGACAAGTAATTCGGAAC 60.472 50.000 0.00 0.00 37.32 3.62
1957 2041 9.642343 AGTACTACTGTAATGGATCTATTGACA 57.358 33.333 14.10 12.22 0.00 3.58
1970 2054 6.127647 GGATCTATTGACAAAATTGGTCTGCA 60.128 38.462 1.85 0.00 36.26 4.41
2000 2084 0.110644 GTGCGTGCAGTTTAGTGCTC 60.111 55.000 10.61 6.37 44.32 4.26
2002 2086 0.798776 GCGTGCAGTTTAGTGCTCAT 59.201 50.000 10.61 0.00 44.32 2.90
2003 2087 1.197721 GCGTGCAGTTTAGTGCTCATT 59.802 47.619 10.61 0.00 44.32 2.57
2004 2088 2.350772 GCGTGCAGTTTAGTGCTCATTT 60.351 45.455 10.61 0.00 44.32 2.32
2005 2089 3.228749 CGTGCAGTTTAGTGCTCATTTG 58.771 45.455 10.61 0.00 44.32 2.32
2020 2104 5.163426 TGCTCATTTGTTTGATTCAACCTGT 60.163 36.000 0.00 0.00 0.00 4.00
2030 2114 3.758023 TGATTCAACCTGTGCCAGTTATG 59.242 43.478 2.18 0.00 0.00 1.90
2062 2205 0.242017 GGACATCACCTGCAAACTGC 59.758 55.000 0.00 0.00 45.29 4.40
2067 2210 1.241165 TCACCTGCAAACTGCTGATG 58.759 50.000 7.05 0.64 45.31 3.07
2316 4530 3.449227 CGCCTGTCCACCGCTCTA 61.449 66.667 0.00 0.00 0.00 2.43
2415 4629 2.586357 GCGATGGAAGAGCGGGAC 60.586 66.667 0.00 0.00 0.00 4.46
2466 4680 2.897350 GGCTTCCAATCGGAGCCG 60.897 66.667 1.74 1.74 44.10 5.52
2520 4734 1.838073 GCTTCGGGGTGGAAGAAGGA 61.838 60.000 6.50 0.00 44.93 3.36
2556 4770 4.452733 CTGGGACCCGGCGAGTTC 62.453 72.222 9.30 0.00 0.00 3.01
2559 4773 4.452733 GGACCCGGCGAGTTCCAG 62.453 72.222 9.30 0.00 0.00 3.86
2560 4774 4.452733 GACCCGGCGAGTTCCAGG 62.453 72.222 9.30 0.49 0.00 4.45
2564 4778 2.579201 CGGCGAGTTCCAGGTGAT 59.421 61.111 0.00 0.00 0.00 3.06
2644 4858 3.785859 GGGCCTCCGTCATGCTCA 61.786 66.667 0.84 0.00 0.00 4.26
2696 4910 0.321122 GAGAGGCTGTGTCACAAGGG 60.321 60.000 7.18 0.00 0.00 3.95
2698 4912 1.768684 GAGGCTGTGTCACAAGGGGA 61.769 60.000 7.18 0.00 0.00 4.81
2704 4918 2.137528 TGTCACAAGGGGAGCGTCA 61.138 57.895 0.00 0.00 0.00 4.35
2705 4919 1.668151 GTCACAAGGGGAGCGTCAC 60.668 63.158 0.00 0.00 0.00 3.67
2706 4920 2.137528 TCACAAGGGGAGCGTCACA 61.138 57.895 0.00 0.00 0.00 3.58
2707 4921 1.227823 CACAAGGGGAGCGTCACAA 60.228 57.895 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.945481 TCTGAATCAGCAAAATTTTCTTTTGA 57.055 26.923 5.18 3.47 40.73 2.69
1 2 9.991388 TTTCTGAATCAGCAAAATTTTCTTTTG 57.009 25.926 5.18 6.16 41.09 2.44
5 6 9.333724 ACATTTTCTGAATCAGCAAAATTTTCT 57.666 25.926 20.32 0.00 31.44 2.52
6 7 9.940166 AACATTTTCTGAATCAGCAAAATTTTC 57.060 25.926 20.32 0.00 31.44 2.29
7 8 9.940166 GAACATTTTCTGAATCAGCAAAATTTT 57.060 25.926 20.32 19.95 31.44 1.82
8 9 9.111613 TGAACATTTTCTGAATCAGCAAAATTT 57.888 25.926 20.32 17.95 31.44 1.82
9 10 8.665643 TGAACATTTTCTGAATCAGCAAAATT 57.334 26.923 20.32 14.58 31.44 1.82
10 11 7.386848 CCTGAACATTTTCTGAATCAGCAAAAT 59.613 33.333 11.66 15.94 39.18 1.82
11 12 6.702723 CCTGAACATTTTCTGAATCAGCAAAA 59.297 34.615 11.66 14.67 39.18 2.44
12 13 6.040729 TCCTGAACATTTTCTGAATCAGCAAA 59.959 34.615 10.21 10.21 39.18 3.68
13 14 5.535783 TCCTGAACATTTTCTGAATCAGCAA 59.464 36.000 5.18 0.00 39.18 3.91
14 15 5.072055 TCCTGAACATTTTCTGAATCAGCA 58.928 37.500 5.18 0.00 39.18 4.41
15 16 5.633830 TCCTGAACATTTTCTGAATCAGC 57.366 39.130 5.18 0.00 39.18 4.26
29 30 7.831691 TCCATGTTCTTTAAATTCCTGAACA 57.168 32.000 17.28 17.28 46.82 3.18
30 31 9.358872 GAATCCATGTTCTTTAAATTCCTGAAC 57.641 33.333 9.27 9.27 37.92 3.18
31 32 9.087871 TGAATCCATGTTCTTTAAATTCCTGAA 57.912 29.630 0.00 0.00 0.00 3.02
32 33 8.648698 TGAATCCATGTTCTTTAAATTCCTGA 57.351 30.769 0.00 0.00 0.00 3.86
33 34 8.742777 TCTGAATCCATGTTCTTTAAATTCCTG 58.257 33.333 0.00 0.00 0.00 3.86
34 35 8.884124 TCTGAATCCATGTTCTTTAAATTCCT 57.116 30.769 0.00 0.00 0.00 3.36
35 36 9.927668 TTTCTGAATCCATGTTCTTTAAATTCC 57.072 29.630 0.00 0.00 0.00 3.01
96 97 7.025520 TCCCTCTTTCTCTCATGATCTTTTT 57.974 36.000 0.00 0.00 0.00 1.94
97 98 6.633325 TCCCTCTTTCTCTCATGATCTTTT 57.367 37.500 0.00 0.00 0.00 2.27
98 99 6.633325 TTCCCTCTTTCTCTCATGATCTTT 57.367 37.500 0.00 0.00 0.00 2.52
99 100 6.633325 TTTCCCTCTTTCTCTCATGATCTT 57.367 37.500 0.00 0.00 0.00 2.40
100 101 6.352910 CCTTTTCCCTCTTTCTCTCATGATCT 60.353 42.308 0.00 0.00 0.00 2.75
101 102 5.821995 CCTTTTCCCTCTTTCTCTCATGATC 59.178 44.000 0.00 0.00 0.00 2.92
102 103 5.490357 TCCTTTTCCCTCTTTCTCTCATGAT 59.510 40.000 0.00 0.00 0.00 2.45
103 104 4.846367 TCCTTTTCCCTCTTTCTCTCATGA 59.154 41.667 0.00 0.00 0.00 3.07
104 105 5.171339 TCCTTTTCCCTCTTTCTCTCATG 57.829 43.478 0.00 0.00 0.00 3.07
105 106 5.850046 TTCCTTTTCCCTCTTTCTCTCAT 57.150 39.130 0.00 0.00 0.00 2.90
106 107 5.646692 TTTCCTTTTCCCTCTTTCTCTCA 57.353 39.130 0.00 0.00 0.00 3.27
107 108 8.637196 TTTATTTCCTTTTCCCTCTTTCTCTC 57.363 34.615 0.00 0.00 0.00 3.20
133 134 9.952030 ACCTTTTCCTTTCTTGTTTCATTTTTA 57.048 25.926 0.00 0.00 0.00 1.52
134 135 8.729756 CACCTTTTCCTTTCTTGTTTCATTTTT 58.270 29.630 0.00 0.00 0.00 1.94
135 136 8.100164 TCACCTTTTCCTTTCTTGTTTCATTTT 58.900 29.630 0.00 0.00 0.00 1.82
136 137 7.619965 TCACCTTTTCCTTTCTTGTTTCATTT 58.380 30.769 0.00 0.00 0.00 2.32
137 138 7.181569 TCACCTTTTCCTTTCTTGTTTCATT 57.818 32.000 0.00 0.00 0.00 2.57
138 139 6.790232 TCACCTTTTCCTTTCTTGTTTCAT 57.210 33.333 0.00 0.00 0.00 2.57
139 140 6.435904 TCTTCACCTTTTCCTTTCTTGTTTCA 59.564 34.615 0.00 0.00 0.00 2.69
140 141 6.863275 TCTTCACCTTTTCCTTTCTTGTTTC 58.137 36.000 0.00 0.00 0.00 2.78
141 142 6.850752 TCTTCACCTTTTCCTTTCTTGTTT 57.149 33.333 0.00 0.00 0.00 2.83
142 143 6.850752 TTCTTCACCTTTTCCTTTCTTGTT 57.149 33.333 0.00 0.00 0.00 2.83
143 144 6.850752 TTTCTTCACCTTTTCCTTTCTTGT 57.149 33.333 0.00 0.00 0.00 3.16
144 145 7.323420 ACTTTTCTTCACCTTTTCCTTTCTTG 58.677 34.615 0.00 0.00 0.00 3.02
145 146 7.363880 GGACTTTTCTTCACCTTTTCCTTTCTT 60.364 37.037 0.00 0.00 0.00 2.52
146 147 6.096987 GGACTTTTCTTCACCTTTTCCTTTCT 59.903 38.462 0.00 0.00 0.00 2.52
147 148 6.273825 GGACTTTTCTTCACCTTTTCCTTTC 58.726 40.000 0.00 0.00 0.00 2.62
148 149 5.128827 GGGACTTTTCTTCACCTTTTCCTTT 59.871 40.000 0.00 0.00 0.00 3.11
149 150 4.649674 GGGACTTTTCTTCACCTTTTCCTT 59.350 41.667 0.00 0.00 0.00 3.36
150 151 4.215908 GGGACTTTTCTTCACCTTTTCCT 58.784 43.478 0.00 0.00 0.00 3.36
151 152 3.958147 TGGGACTTTTCTTCACCTTTTCC 59.042 43.478 0.00 0.00 0.00 3.13
152 153 4.887655 TCTGGGACTTTTCTTCACCTTTTC 59.112 41.667 0.00 0.00 0.00 2.29
153 154 4.645136 GTCTGGGACTTTTCTTCACCTTTT 59.355 41.667 0.00 0.00 0.00 2.27
154 155 4.207955 GTCTGGGACTTTTCTTCACCTTT 58.792 43.478 0.00 0.00 0.00 3.11
155 156 3.202151 TGTCTGGGACTTTTCTTCACCTT 59.798 43.478 0.00 0.00 33.15 3.50
156 157 2.777692 TGTCTGGGACTTTTCTTCACCT 59.222 45.455 0.00 0.00 33.15 4.00
157 158 3.208747 TGTCTGGGACTTTTCTTCACC 57.791 47.619 0.00 0.00 33.15 4.02
158 159 4.202020 GGTTTGTCTGGGACTTTTCTTCAC 60.202 45.833 0.00 0.00 33.15 3.18
159 160 3.951680 GGTTTGTCTGGGACTTTTCTTCA 59.048 43.478 0.00 0.00 33.15 3.02
160 161 3.951680 TGGTTTGTCTGGGACTTTTCTTC 59.048 43.478 0.00 0.00 33.15 2.87
161 162 3.976015 TGGTTTGTCTGGGACTTTTCTT 58.024 40.909 0.00 0.00 33.15 2.52
162 163 3.662759 TGGTTTGTCTGGGACTTTTCT 57.337 42.857 0.00 0.00 33.15 2.52
163 164 4.729227 TTTGGTTTGTCTGGGACTTTTC 57.271 40.909 0.00 0.00 33.15 2.29
164 165 4.775253 TCTTTTGGTTTGTCTGGGACTTTT 59.225 37.500 0.00 0.00 33.15 2.27
165 166 4.349365 TCTTTTGGTTTGTCTGGGACTTT 58.651 39.130 0.00 0.00 33.15 2.66
166 167 3.976015 TCTTTTGGTTTGTCTGGGACTT 58.024 40.909 0.00 0.00 33.15 3.01
167 168 3.662759 TCTTTTGGTTTGTCTGGGACT 57.337 42.857 0.00 0.00 33.15 3.85
168 169 4.729227 TTTCTTTTGGTTTGTCTGGGAC 57.271 40.909 0.00 0.00 0.00 4.46
169 170 4.528596 TGTTTTCTTTTGGTTTGTCTGGGA 59.471 37.500 0.00 0.00 0.00 4.37
170 171 4.826556 TGTTTTCTTTTGGTTTGTCTGGG 58.173 39.130 0.00 0.00 0.00 4.45
171 172 4.329801 GCTGTTTTCTTTTGGTTTGTCTGG 59.670 41.667 0.00 0.00 0.00 3.86
172 173 4.329801 GGCTGTTTTCTTTTGGTTTGTCTG 59.670 41.667 0.00 0.00 0.00 3.51
173 174 4.222810 AGGCTGTTTTCTTTTGGTTTGTCT 59.777 37.500 0.00 0.00 0.00 3.41
174 175 4.503910 AGGCTGTTTTCTTTTGGTTTGTC 58.496 39.130 0.00 0.00 0.00 3.18
175 176 4.020662 TGAGGCTGTTTTCTTTTGGTTTGT 60.021 37.500 0.00 0.00 0.00 2.83
176 177 4.502962 TGAGGCTGTTTTCTTTTGGTTTG 58.497 39.130 0.00 0.00 0.00 2.93
177 178 4.817318 TGAGGCTGTTTTCTTTTGGTTT 57.183 36.364 0.00 0.00 0.00 3.27
178 179 4.817318 TTGAGGCTGTTTTCTTTTGGTT 57.183 36.364 0.00 0.00 0.00 3.67
179 180 4.817318 TTTGAGGCTGTTTTCTTTTGGT 57.183 36.364 0.00 0.00 0.00 3.67
199 200 2.496111 TCTTCGCATGTACCGGTTTTT 58.504 42.857 15.04 0.00 0.00 1.94
200 201 2.172851 TCTTCGCATGTACCGGTTTT 57.827 45.000 15.04 0.00 0.00 2.43
201 202 2.006888 CATCTTCGCATGTACCGGTTT 58.993 47.619 15.04 0.00 0.00 3.27
202 203 1.651987 CATCTTCGCATGTACCGGTT 58.348 50.000 15.04 0.00 0.00 4.44
203 204 0.810031 GCATCTTCGCATGTACCGGT 60.810 55.000 13.98 13.98 0.00 5.28
204 205 0.530650 AGCATCTTCGCATGTACCGG 60.531 55.000 0.00 0.00 0.00 5.28
205 206 2.054363 CTAGCATCTTCGCATGTACCG 58.946 52.381 0.00 0.00 0.00 4.02
206 207 3.099267 ACTAGCATCTTCGCATGTACC 57.901 47.619 0.00 0.00 0.00 3.34
207 208 4.623167 CCATACTAGCATCTTCGCATGTAC 59.377 45.833 0.00 0.00 0.00 2.90
208 209 4.321974 CCCATACTAGCATCTTCGCATGTA 60.322 45.833 0.00 0.00 0.00 2.29
209 210 3.555795 CCCATACTAGCATCTTCGCATGT 60.556 47.826 0.00 0.00 0.00 3.21
210 211 2.998670 CCCATACTAGCATCTTCGCATG 59.001 50.000 0.00 0.00 0.00 4.06
211 212 2.613977 GCCCATACTAGCATCTTCGCAT 60.614 50.000 0.00 0.00 0.00 4.73
212 213 1.270305 GCCCATACTAGCATCTTCGCA 60.270 52.381 0.00 0.00 0.00 5.10
213 214 1.433534 GCCCATACTAGCATCTTCGC 58.566 55.000 0.00 0.00 0.00 4.70
214 215 1.670087 CCGCCCATACTAGCATCTTCG 60.670 57.143 0.00 0.00 0.00 3.79
215 216 1.338200 CCCGCCCATACTAGCATCTTC 60.338 57.143 0.00 0.00 0.00 2.87
216 217 0.687354 CCCGCCCATACTAGCATCTT 59.313 55.000 0.00 0.00 0.00 2.40
217 218 1.831652 GCCCGCCCATACTAGCATCT 61.832 60.000 0.00 0.00 0.00 2.90
218 219 1.376037 GCCCGCCCATACTAGCATC 60.376 63.158 0.00 0.00 0.00 3.91
219 220 2.750350 GCCCGCCCATACTAGCAT 59.250 61.111 0.00 0.00 0.00 3.79
220 221 3.556306 GGCCCGCCCATACTAGCA 61.556 66.667 0.00 0.00 0.00 3.49
230 231 0.108377 CATTTTTAAGTGGGCCCGCC 60.108 55.000 32.01 17.72 0.00 6.13
231 232 0.606096 ACATTTTTAAGTGGGCCCGC 59.394 50.000 28.88 28.88 0.00 6.13
232 233 1.889829 TGACATTTTTAAGTGGGCCCG 59.110 47.619 19.37 0.00 0.00 6.13
233 234 2.233676 CCTGACATTTTTAAGTGGGCCC 59.766 50.000 17.59 17.59 0.00 5.80
234 235 3.056821 GTCCTGACATTTTTAAGTGGGCC 60.057 47.826 0.00 0.00 0.00 5.80
235 236 3.365969 CGTCCTGACATTTTTAAGTGGGC 60.366 47.826 0.00 0.00 0.00 5.36
236 237 3.818773 ACGTCCTGACATTTTTAAGTGGG 59.181 43.478 0.00 0.00 0.00 4.61
237 238 4.320202 CCACGTCCTGACATTTTTAAGTGG 60.320 45.833 0.00 0.00 39.25 4.00
238 239 4.320202 CCCACGTCCTGACATTTTTAAGTG 60.320 45.833 0.00 0.00 0.00 3.16
239 240 3.818773 CCCACGTCCTGACATTTTTAAGT 59.181 43.478 0.00 0.00 0.00 2.24
240 241 3.818773 ACCCACGTCCTGACATTTTTAAG 59.181 43.478 0.00 0.00 0.00 1.85
241 242 3.566322 CACCCACGTCCTGACATTTTTAA 59.434 43.478 0.00 0.00 0.00 1.52
242 243 3.142951 CACCCACGTCCTGACATTTTTA 58.857 45.455 0.00 0.00 0.00 1.52
243 244 1.953686 CACCCACGTCCTGACATTTTT 59.046 47.619 0.00 0.00 0.00 1.94
244 245 1.604604 CACCCACGTCCTGACATTTT 58.395 50.000 0.00 0.00 0.00 1.82
245 246 0.889186 GCACCCACGTCCTGACATTT 60.889 55.000 0.00 0.00 0.00 2.32
246 247 1.302511 GCACCCACGTCCTGACATT 60.303 57.895 0.00 0.00 0.00 2.71
247 248 2.347490 GCACCCACGTCCTGACAT 59.653 61.111 0.00 0.00 0.00 3.06
248 249 3.936203 GGCACCCACGTCCTGACA 61.936 66.667 0.00 0.00 0.00 3.58
261 262 4.814294 CCGGAGCGTACAGGGCAC 62.814 72.222 0.00 0.00 0.00 5.01
263 264 3.501458 GATCCGGAGCGTACAGGGC 62.501 68.421 11.34 0.00 0.00 5.19
264 265 2.728817 GATCCGGAGCGTACAGGG 59.271 66.667 11.34 0.00 0.00 4.45
265 266 2.728817 GGATCCGGAGCGTACAGG 59.271 66.667 14.60 0.00 0.00 4.00
266 267 2.331805 CGGATCCGGAGCGTACAG 59.668 66.667 26.95 0.00 35.56 2.74
277 278 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
278 279 2.899339 GAGCAGGCAAGCCGGATC 60.899 66.667 15.46 14.32 39.23 3.36
279 280 4.496336 GGAGCAGGCAAGCCGGAT 62.496 66.667 15.46 8.74 41.95 4.18
283 284 4.811364 GGAGGGAGCAGGCAAGCC 62.811 72.222 2.02 2.02 34.23 4.35
284 285 4.811364 GGGAGGGAGCAGGCAAGC 62.811 72.222 0.00 0.00 0.00 4.01
285 286 4.120755 GGGGAGGGAGCAGGCAAG 62.121 72.222 0.00 0.00 0.00 4.01
287 288 4.765970 ATGGGGAGGGAGCAGGCA 62.766 66.667 0.00 0.00 0.00 4.75
288 289 4.201122 CATGGGGAGGGAGCAGGC 62.201 72.222 0.00 0.00 0.00 4.85
289 290 4.201122 GCATGGGGAGGGAGCAGG 62.201 72.222 0.00 0.00 0.00 4.85
290 291 2.621517 GAAGCATGGGGAGGGAGCAG 62.622 65.000 0.00 0.00 0.00 4.24
291 292 2.614969 AAGCATGGGGAGGGAGCA 60.615 61.111 0.00 0.00 0.00 4.26
292 293 2.194326 GAAGCATGGGGAGGGAGC 59.806 66.667 0.00 0.00 0.00 4.70
293 294 1.358830 ATGGAAGCATGGGGAGGGAG 61.359 60.000 0.00 0.00 0.00 4.30
294 295 1.309013 ATGGAAGCATGGGGAGGGA 60.309 57.895 0.00 0.00 0.00 4.20
295 296 1.152368 GATGGAAGCATGGGGAGGG 59.848 63.158 0.00 0.00 0.00 4.30
296 297 0.178998 CAGATGGAAGCATGGGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
297 298 0.549950 ACAGATGGAAGCATGGGGAG 59.450 55.000 0.00 0.00 0.00 4.30
298 299 0.256752 CACAGATGGAAGCATGGGGA 59.743 55.000 0.00 0.00 0.00 4.81
299 300 1.389609 GCACAGATGGAAGCATGGGG 61.390 60.000 0.00 0.00 0.00 4.96
300 301 0.395311 AGCACAGATGGAAGCATGGG 60.395 55.000 0.00 0.00 0.00 4.00
301 302 1.022735 GAGCACAGATGGAAGCATGG 58.977 55.000 0.00 0.00 0.00 3.66
302 303 1.022735 GGAGCACAGATGGAAGCATG 58.977 55.000 0.00 0.00 0.00 4.06
303 304 0.106819 GGGAGCACAGATGGAAGCAT 60.107 55.000 0.00 0.00 0.00 3.79
304 305 1.300963 GGGAGCACAGATGGAAGCA 59.699 57.895 0.00 0.00 0.00 3.91
305 306 1.028868 GTGGGAGCACAGATGGAAGC 61.029 60.000 0.00 0.00 0.00 3.86
306 307 0.393537 GGTGGGAGCACAGATGGAAG 60.394 60.000 0.00 0.00 0.00 3.46
307 308 0.842030 AGGTGGGAGCACAGATGGAA 60.842 55.000 0.00 0.00 0.00 3.53
308 309 1.229625 AGGTGGGAGCACAGATGGA 60.230 57.895 0.00 0.00 0.00 3.41
309 310 1.222936 GAGGTGGGAGCACAGATGG 59.777 63.158 0.00 0.00 0.00 3.51
310 311 0.545171 ATGAGGTGGGAGCACAGATG 59.455 55.000 0.00 0.00 0.00 2.90
311 312 0.835941 GATGAGGTGGGAGCACAGAT 59.164 55.000 0.00 0.00 0.00 2.90
312 313 0.252421 AGATGAGGTGGGAGCACAGA 60.252 55.000 0.00 0.00 0.00 3.41
313 314 0.617413 AAGATGAGGTGGGAGCACAG 59.383 55.000 0.00 0.00 0.00 3.66
314 315 1.951209 TAAGATGAGGTGGGAGCACA 58.049 50.000 0.00 0.00 0.00 4.57
315 316 2.486191 CCATAAGATGAGGTGGGAGCAC 60.486 54.545 0.00 0.00 0.00 4.40
316 317 1.770658 CCATAAGATGAGGTGGGAGCA 59.229 52.381 0.00 0.00 0.00 4.26
317 318 1.544314 GCCATAAGATGAGGTGGGAGC 60.544 57.143 0.00 0.00 32.35 4.70
318 319 2.053244 AGCCATAAGATGAGGTGGGAG 58.947 52.381 0.00 0.00 32.35 4.30
319 320 1.770658 CAGCCATAAGATGAGGTGGGA 59.229 52.381 0.00 0.00 32.35 4.37
320 321 1.492176 ACAGCCATAAGATGAGGTGGG 59.508 52.381 10.03 0.00 35.05 4.61
321 322 2.437281 AGACAGCCATAAGATGAGGTGG 59.563 50.000 10.03 0.00 35.05 4.61
322 323 3.834489 AGACAGCCATAAGATGAGGTG 57.166 47.619 0.00 0.00 36.06 4.00
323 324 4.851639 AAAGACAGCCATAAGATGAGGT 57.148 40.909 0.00 0.00 0.00 3.85
348 349 9.449719 GTGATTAGATTAGAAAGGACAAAAGGA 57.550 33.333 0.00 0.00 0.00 3.36
349 350 8.678199 GGTGATTAGATTAGAAAGGACAAAAGG 58.322 37.037 0.00 0.00 0.00 3.11
350 351 8.678199 GGGTGATTAGATTAGAAAGGACAAAAG 58.322 37.037 0.00 0.00 0.00 2.27
351 352 7.614192 GGGGTGATTAGATTAGAAAGGACAAAA 59.386 37.037 0.00 0.00 0.00 2.44
352 353 7.116736 GGGGTGATTAGATTAGAAAGGACAAA 58.883 38.462 0.00 0.00 0.00 2.83
353 354 6.353602 GGGGGTGATTAGATTAGAAAGGACAA 60.354 42.308 0.00 0.00 0.00 3.18
354 355 5.132144 GGGGGTGATTAGATTAGAAAGGACA 59.868 44.000 0.00 0.00 0.00 4.02
355 356 5.622180 GGGGGTGATTAGATTAGAAAGGAC 58.378 45.833 0.00 0.00 0.00 3.85
356 357 5.906772 GGGGGTGATTAGATTAGAAAGGA 57.093 43.478 0.00 0.00 0.00 3.36
379 380 1.342975 CCCCACCCCCTTGAAATTAGG 60.343 57.143 0.00 0.00 0.00 2.69
380 381 1.964830 GCCCCACCCCCTTGAAATTAG 60.965 57.143 0.00 0.00 0.00 1.73
381 382 0.041982 GCCCCACCCCCTTGAAATTA 59.958 55.000 0.00 0.00 0.00 1.40
382 383 1.229496 GCCCCACCCCCTTGAAATT 60.229 57.895 0.00 0.00 0.00 1.82
383 384 2.449777 GCCCCACCCCCTTGAAAT 59.550 61.111 0.00 0.00 0.00 2.17
384 385 3.922364 GGCCCCACCCCCTTGAAA 61.922 66.667 0.00 0.00 0.00 2.69
399 400 1.721664 GGAACGAAATAAGGCCCGGC 61.722 60.000 0.00 0.00 0.00 6.13
400 401 0.393267 TGGAACGAAATAAGGCCCGG 60.393 55.000 0.00 0.00 0.00 5.73
401 402 1.455248 TTGGAACGAAATAAGGCCCG 58.545 50.000 0.00 0.00 0.00 6.13
402 403 3.020984 TGATTGGAACGAAATAAGGCCC 58.979 45.455 0.00 0.00 0.00 5.80
403 404 4.712122 TTGATTGGAACGAAATAAGGCC 57.288 40.909 0.00 0.00 0.00 5.19
404 405 6.329496 TGATTTGATTGGAACGAAATAAGGC 58.671 36.000 0.00 0.00 0.00 4.35
405 406 7.009540 GCTTGATTTGATTGGAACGAAATAAGG 59.990 37.037 0.00 0.00 0.00 2.69
406 407 7.009540 GGCTTGATTTGATTGGAACGAAATAAG 59.990 37.037 0.00 0.00 0.00 1.73
407 408 6.811170 GGCTTGATTTGATTGGAACGAAATAA 59.189 34.615 0.00 0.00 0.00 1.40
408 409 6.071672 TGGCTTGATTTGATTGGAACGAAATA 60.072 34.615 0.00 0.00 0.00 1.40
409 410 5.170748 GGCTTGATTTGATTGGAACGAAAT 58.829 37.500 0.00 0.00 0.00 2.17
410 411 4.038522 TGGCTTGATTTGATTGGAACGAAA 59.961 37.500 0.00 0.00 0.00 3.46
411 412 3.571828 TGGCTTGATTTGATTGGAACGAA 59.428 39.130 0.00 0.00 0.00 3.85
412 413 3.057596 GTGGCTTGATTTGATTGGAACGA 60.058 43.478 0.00 0.00 0.00 3.85
413 414 3.244976 GTGGCTTGATTTGATTGGAACG 58.755 45.455 0.00 0.00 0.00 3.95
414 415 3.244976 CGTGGCTTGATTTGATTGGAAC 58.755 45.455 0.00 0.00 0.00 3.62
415 416 2.890311 ACGTGGCTTGATTTGATTGGAA 59.110 40.909 0.00 0.00 0.00 3.53
416 417 2.513753 ACGTGGCTTGATTTGATTGGA 58.486 42.857 0.00 0.00 0.00 3.53
417 418 4.353737 CATACGTGGCTTGATTTGATTGG 58.646 43.478 0.00 0.00 0.00 3.16
418 419 3.792956 GCATACGTGGCTTGATTTGATTG 59.207 43.478 0.00 0.00 0.00 2.67
419 420 3.181487 GGCATACGTGGCTTGATTTGATT 60.181 43.478 12.79 0.00 46.64 2.57
420 421 2.358898 GGCATACGTGGCTTGATTTGAT 59.641 45.455 12.79 0.00 46.64 2.57
421 422 1.742831 GGCATACGTGGCTTGATTTGA 59.257 47.619 12.79 0.00 46.64 2.69
422 423 2.193306 GGCATACGTGGCTTGATTTG 57.807 50.000 12.79 0.00 46.64 2.32
430 431 4.830765 TGCTCCGGCATACGTGGC 62.831 66.667 0.00 1.07 44.28 5.01
442 443 4.881440 TGCGGCCATCCATGCTCC 62.881 66.667 2.24 0.00 0.00 4.70
443 444 3.589881 GTGCGGCCATCCATGCTC 61.590 66.667 2.24 0.00 0.00 4.26
462 463 4.711949 ACTTGCCTGCTGCCCTCG 62.712 66.667 0.00 0.00 40.16 4.63
463 464 2.749441 GACTTGCCTGCTGCCCTC 60.749 66.667 0.00 0.00 40.16 4.30
464 465 3.255397 AGACTTGCCTGCTGCCCT 61.255 61.111 0.00 0.00 40.16 5.19
465 466 2.749441 GAGACTTGCCTGCTGCCC 60.749 66.667 0.00 0.00 40.16 5.36
466 467 3.123620 CGAGACTTGCCTGCTGCC 61.124 66.667 0.00 0.00 40.16 4.85
467 468 2.358003 ACGAGACTTGCCTGCTGC 60.358 61.111 0.00 0.00 41.77 5.25
468 469 1.739562 GGACGAGACTTGCCTGCTG 60.740 63.158 0.00 0.00 0.00 4.41
469 470 2.659610 GGACGAGACTTGCCTGCT 59.340 61.111 0.00 0.00 0.00 4.24
470 471 2.209064 TACGGACGAGACTTGCCTGC 62.209 60.000 0.00 0.00 0.00 4.85
471 472 0.456312 GTACGGACGAGACTTGCCTG 60.456 60.000 0.00 0.00 0.00 4.85
472 473 1.881602 GTACGGACGAGACTTGCCT 59.118 57.895 0.00 0.00 0.00 4.75
473 474 4.472702 GTACGGACGAGACTTGCC 57.527 61.111 0.00 0.00 0.00 4.52
498 499 2.892215 GCTAACTTAGGAGATAGGCGGT 59.108 50.000 0.00 0.00 31.04 5.68
502 503 8.658840 AGATAAAGGCTAACTTAGGAGATAGG 57.341 38.462 0.00 0.00 38.85 2.57
598 605 1.145598 GGCGGGCTAGGGAAGTTAC 59.854 63.158 0.00 0.00 0.00 2.50
612 619 2.515996 TACCTTGGAAGCGAAGGCGG 62.516 60.000 7.95 0.00 41.95 6.13
719 727 8.433893 TCGCATGTTCATTTGATTACATTTTTG 58.566 29.630 0.00 0.00 0.00 2.44
726 734 6.021232 CACACATCGCATGTTCATTTGATTAC 60.021 38.462 0.00 0.00 42.70 1.89
738 746 4.061949 TGTGCACACATCGCATGT 57.938 50.000 17.42 0.00 46.22 3.21
786 794 9.557338 GTATAATGTGCCGTTTTTAAATGTGTA 57.443 29.630 0.00 0.00 0.00 2.90
795 803 7.271653 CGTTTACATGTATAATGTGCCGTTTTT 59.728 33.333 6.36 0.00 33.76 1.94
800 808 5.398176 ACGTTTACATGTATAATGTGCCG 57.602 39.130 6.36 3.63 33.76 5.69
801 809 7.912383 AGTAACGTTTACATGTATAATGTGCC 58.088 34.615 5.91 13.97 33.76 5.01
802 810 9.205916 CAAGTAACGTTTACATGTATAATGTGC 57.794 33.333 5.91 15.33 33.76 4.57
803 811 9.697250 CCAAGTAACGTTTACATGTATAATGTG 57.303 33.333 5.91 10.47 33.76 3.21
804 812 8.392612 GCCAAGTAACGTTTACATGTATAATGT 58.607 33.333 5.91 11.81 36.13 2.71
805 813 7.581241 CGCCAAGTAACGTTTACATGTATAATG 59.419 37.037 5.91 11.25 0.00 1.90
806 814 7.623770 CGCCAAGTAACGTTTACATGTATAAT 58.376 34.615 5.91 0.00 0.00 1.28
807 815 6.455380 GCGCCAAGTAACGTTTACATGTATAA 60.455 38.462 5.91 1.70 0.00 0.98
808 816 5.005586 GCGCCAAGTAACGTTTACATGTATA 59.994 40.000 5.91 0.00 0.00 1.47
809 817 4.201744 GCGCCAAGTAACGTTTACATGTAT 60.202 41.667 5.91 0.00 0.00 2.29
810 818 3.123284 GCGCCAAGTAACGTTTACATGTA 59.877 43.478 5.91 0.08 0.00 2.29
811 819 2.096119 GCGCCAAGTAACGTTTACATGT 60.096 45.455 5.91 2.69 0.00 3.21
812 820 2.501881 GCGCCAAGTAACGTTTACATG 58.498 47.619 5.91 6.18 0.00 3.21
813 821 1.127213 CGCGCCAAGTAACGTTTACAT 59.873 47.619 5.91 0.00 0.00 2.29
814 822 0.507785 CGCGCCAAGTAACGTTTACA 59.492 50.000 5.91 0.00 0.00 2.41
815 823 0.786806 GCGCGCCAAGTAACGTTTAC 60.787 55.000 23.24 2.89 0.00 2.01
816 824 1.220169 TGCGCGCCAAGTAACGTTTA 61.220 50.000 30.77 0.71 0.00 2.01
817 825 1.847890 ATGCGCGCCAAGTAACGTTT 61.848 50.000 30.77 0.00 0.00 3.60
818 826 1.015085 TATGCGCGCCAAGTAACGTT 61.015 50.000 30.77 5.88 0.00 3.99
819 827 1.015085 TTATGCGCGCCAAGTAACGT 61.015 50.000 30.77 1.94 0.00 3.99
820 828 0.095589 TTTATGCGCGCCAAGTAACG 59.904 50.000 30.77 0.00 0.00 3.18
821 829 1.810197 CTTTATGCGCGCCAAGTAAC 58.190 50.000 30.77 0.00 0.00 2.50
822 830 0.098025 GCTTTATGCGCGCCAAGTAA 59.902 50.000 30.77 18.45 0.00 2.24
823 831 1.021920 TGCTTTATGCGCGCCAAGTA 61.022 50.000 30.77 22.75 46.63 2.24
824 832 1.656818 ATGCTTTATGCGCGCCAAGT 61.657 50.000 30.77 14.46 46.63 3.16
825 833 0.931662 GATGCTTTATGCGCGCCAAG 60.932 55.000 30.77 26.21 46.63 3.61
826 834 1.063972 GATGCTTTATGCGCGCCAA 59.936 52.632 30.77 19.90 46.63 4.52
827 835 2.111582 TGATGCTTTATGCGCGCCA 61.112 52.632 30.77 18.59 46.63 5.69
828 836 1.655350 GTGATGCTTTATGCGCGCC 60.655 57.895 30.77 12.65 46.63 6.53
829 837 2.000323 CGTGATGCTTTATGCGCGC 61.000 57.895 27.26 27.26 46.63 6.86
830 838 2.000323 GCGTGATGCTTTATGCGCG 61.000 57.895 0.00 0.00 46.63 6.86
831 839 0.317269 ATGCGTGATGCTTTATGCGC 60.317 50.000 0.00 0.00 46.63 6.09
832 840 1.003652 TCATGCGTGATGCTTTATGCG 60.004 47.619 3.97 0.00 46.63 4.73
833 841 2.378806 GTCATGCGTGATGCTTTATGC 58.621 47.619 12.67 2.01 46.63 3.14
834 842 2.600556 CCGTCATGCGTGATGCTTTATG 60.601 50.000 20.73 4.32 46.63 1.90
835 843 1.599071 CCGTCATGCGTGATGCTTTAT 59.401 47.619 20.73 0.00 46.63 1.40
836 844 1.006086 CCGTCATGCGTGATGCTTTA 58.994 50.000 20.73 0.00 46.63 1.85
837 845 0.673333 TCCGTCATGCGTGATGCTTT 60.673 50.000 20.73 0.00 46.63 3.51
838 846 0.462581 ATCCGTCATGCGTGATGCTT 60.463 50.000 20.73 8.58 46.63 3.91
848 856 3.309388 GGTAATCAGTCGATCCGTCATG 58.691 50.000 0.00 0.00 0.00 3.07
858 866 1.067582 GGGAGGCGGTAATCAGTCG 59.932 63.158 0.00 0.00 0.00 4.18
861 869 1.001406 GATCTGGGAGGCGGTAATCAG 59.999 57.143 0.00 0.00 0.00 2.90
867 875 3.943137 TTGGGATCTGGGAGGCGGT 62.943 63.158 0.00 0.00 0.00 5.68
868 876 3.089874 TTGGGATCTGGGAGGCGG 61.090 66.667 0.00 0.00 0.00 6.13
877 885 1.384191 GGTGCTTGGGTTGGGATCT 59.616 57.895 0.00 0.00 0.00 2.75
902 910 2.533974 CTTGAGCTGGGAGGAGGTGC 62.534 65.000 0.00 0.00 0.00 5.01
906 914 0.251634 GGAACTTGAGCTGGGAGGAG 59.748 60.000 0.00 0.00 0.00 3.69
944 980 6.749139 AGATTTGTTAAGGTTTGGCTCTTTC 58.251 36.000 0.00 0.00 0.00 2.62
945 981 6.323739 TGAGATTTGTTAAGGTTTGGCTCTTT 59.676 34.615 0.00 0.00 0.00 2.52
946 982 5.833131 TGAGATTTGTTAAGGTTTGGCTCTT 59.167 36.000 0.00 0.00 0.00 2.85
947 983 5.241728 GTGAGATTTGTTAAGGTTTGGCTCT 59.758 40.000 0.00 0.00 0.00 4.09
948 984 5.009610 TGTGAGATTTGTTAAGGTTTGGCTC 59.990 40.000 0.00 0.00 0.00 4.70
949 985 4.892934 TGTGAGATTTGTTAAGGTTTGGCT 59.107 37.500 0.00 0.00 0.00 4.75
950 986 5.195001 TGTGAGATTTGTTAAGGTTTGGC 57.805 39.130 0.00 0.00 0.00 4.52
951 987 5.691754 GCTTGTGAGATTTGTTAAGGTTTGG 59.308 40.000 0.00 0.00 0.00 3.28
952 988 6.507023 AGCTTGTGAGATTTGTTAAGGTTTG 58.493 36.000 0.00 0.00 0.00 2.93
953 989 6.715347 AGCTTGTGAGATTTGTTAAGGTTT 57.285 33.333 0.00 0.00 0.00 3.27
954 990 6.770785 TGTAGCTTGTGAGATTTGTTAAGGTT 59.229 34.615 0.00 0.00 0.00 3.50
955 991 6.204882 GTGTAGCTTGTGAGATTTGTTAAGGT 59.795 38.462 0.00 0.00 0.00 3.50
956 992 6.204688 TGTGTAGCTTGTGAGATTTGTTAAGG 59.795 38.462 0.00 0.00 0.00 2.69
957 993 7.189693 TGTGTAGCTTGTGAGATTTGTTAAG 57.810 36.000 0.00 0.00 0.00 1.85
958 994 6.204688 CCTGTGTAGCTTGTGAGATTTGTTAA 59.795 38.462 0.00 0.00 0.00 2.01
959 995 5.700832 CCTGTGTAGCTTGTGAGATTTGTTA 59.299 40.000 0.00 0.00 0.00 2.41
960 996 4.516698 CCTGTGTAGCTTGTGAGATTTGTT 59.483 41.667 0.00 0.00 0.00 2.83
961 997 4.067896 CCTGTGTAGCTTGTGAGATTTGT 58.932 43.478 0.00 0.00 0.00 2.83
962 998 3.120060 GCCTGTGTAGCTTGTGAGATTTG 60.120 47.826 0.00 0.00 0.00 2.32
963 999 3.077359 GCCTGTGTAGCTTGTGAGATTT 58.923 45.455 0.00 0.00 0.00 2.17
969 1005 1.308047 TTGTGCCTGTGTAGCTTGTG 58.692 50.000 0.00 0.00 0.00 3.33
983 1019 2.286872 CCATCTCAGACTGGATTGTGC 58.713 52.381 1.81 0.00 34.24 4.57
996 1032 1.001631 TCCTCCTTCGGCCATCTCA 59.998 57.895 2.24 0.00 0.00 3.27
1065 1101 2.753043 ATGGCGAGGGCAAGCTTG 60.753 61.111 22.44 22.44 42.43 4.01
1677 1740 1.100463 TTGAAGTTGAAGCTGCGGCA 61.100 50.000 21.93 1.29 41.70 5.69
1709 1781 1.153188 CATGCCACCATGCCGACTA 60.153 57.895 0.00 0.00 42.08 2.59
1710 1782 2.438975 CATGCCACCATGCCGACT 60.439 61.111 0.00 0.00 42.08 4.18
1712 1784 2.438254 GTCATGCCACCATGCCGA 60.438 61.111 0.00 0.00 46.69 5.54
1713 1785 2.607411 TAGGTCATGCCACCATGCCG 62.607 60.000 6.37 0.00 46.69 5.69
1714 1786 1.103398 GTAGGTCATGCCACCATGCC 61.103 60.000 6.37 4.47 46.69 4.40
1735 1807 1.803555 CAGTTCACACACACACACACA 59.196 47.619 0.00 0.00 0.00 3.72
1737 1809 1.803555 CACAGTTCACACACACACACA 59.196 47.619 0.00 0.00 0.00 3.72
1739 1811 2.464157 TCACAGTTCACACACACACA 57.536 45.000 0.00 0.00 0.00 3.72
1764 1842 2.003937 AAAGGTAAACACCGGCCATT 57.996 45.000 0.00 0.00 34.28 3.16
1789 1873 2.032894 CCGCTGACACAGTACAAACAAG 60.033 50.000 0.00 0.00 33.43 3.16
1825 1909 5.750352 AATTTGGGACGAAAGGAGTAGTA 57.250 39.130 0.00 0.00 0.00 1.82
1826 1910 4.635699 AATTTGGGACGAAAGGAGTAGT 57.364 40.909 0.00 0.00 0.00 2.73
1827 1911 5.731591 AGTAATTTGGGACGAAAGGAGTAG 58.268 41.667 0.00 0.00 0.00 2.57
1828 1912 5.622914 CGAGTAATTTGGGACGAAAGGAGTA 60.623 44.000 0.00 0.00 0.00 2.59
1829 1913 4.576879 GAGTAATTTGGGACGAAAGGAGT 58.423 43.478 0.00 0.00 0.00 3.85
1830 1914 3.617263 CGAGTAATTTGGGACGAAAGGAG 59.383 47.826 0.00 0.00 0.00 3.69
1831 1915 3.007182 ACGAGTAATTTGGGACGAAAGGA 59.993 43.478 0.00 0.00 0.00 3.36
1832 1916 3.332034 ACGAGTAATTTGGGACGAAAGG 58.668 45.455 0.00 0.00 0.00 3.11
1833 1917 3.060363 CGACGAGTAATTTGGGACGAAAG 59.940 47.826 0.00 0.00 0.00 2.62
1834 1918 2.988493 CGACGAGTAATTTGGGACGAAA 59.012 45.455 0.00 0.00 0.00 3.46
1835 1919 2.598589 CGACGAGTAATTTGGGACGAA 58.401 47.619 0.00 0.00 0.00 3.85
1836 1920 1.733389 GCGACGAGTAATTTGGGACGA 60.733 52.381 0.00 0.00 0.00 4.20
1837 1921 0.643820 GCGACGAGTAATTTGGGACG 59.356 55.000 0.00 0.00 0.00 4.79
1838 1922 1.659098 CAGCGACGAGTAATTTGGGAC 59.341 52.381 0.00 0.00 0.00 4.46
1839 1923 1.546923 TCAGCGACGAGTAATTTGGGA 59.453 47.619 0.00 0.00 0.00 4.37
1840 1924 2.004583 TCAGCGACGAGTAATTTGGG 57.995 50.000 0.00 0.00 0.00 4.12
1841 1925 4.334443 CATTTCAGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
1842 1926 4.092821 TCCATTTCAGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
1843 1927 4.250464 TCCATTTCAGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
1844 1928 3.857052 TCCATTTCAGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
1845 1929 3.520290 TCCATTTCAGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
1846 1930 3.186909 CATCCATTTCAGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
1847 1931 2.165641 ACATCCATTTCAGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
1848 1932 1.066858 ACATCCATTTCAGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
1849 1933 1.645034 ACATCCATTTCAGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
1850 1934 2.951457 TACATCCATTTCAGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
1851 1935 3.384668 AGATACATCCATTTCAGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
1852 1936 5.773575 TCTAGATACATCCATTTCAGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
1853 1937 6.040955 AGTTCTAGATACATCCATTTCAGCGA 59.959 38.462 0.00 0.00 0.00 4.93
1854 1938 6.219473 AGTTCTAGATACATCCATTTCAGCG 58.781 40.000 0.00 0.00 0.00 5.18
1855 1939 9.547753 TTTAGTTCTAGATACATCCATTTCAGC 57.452 33.333 0.00 0.00 0.00 4.26
1881 1965 8.191446 GCACGTATGGATGTATCTAGATGTATT 58.809 37.037 15.79 0.00 29.44 1.89
1882 1966 7.467403 CGCACGTATGGATGTATCTAGATGTAT 60.467 40.741 15.79 9.11 29.44 2.29
1883 1967 6.183360 CGCACGTATGGATGTATCTAGATGTA 60.183 42.308 15.79 4.44 29.44 2.29
1884 1968 5.392057 CGCACGTATGGATGTATCTAGATGT 60.392 44.000 15.79 1.25 30.36 3.06
1885 1969 5.030936 CGCACGTATGGATGTATCTAGATG 58.969 45.833 15.79 0.00 0.00 2.90
1886 1970 4.941873 TCGCACGTATGGATGTATCTAGAT 59.058 41.667 10.73 10.73 0.00 1.98
1887 1971 4.153655 GTCGCACGTATGGATGTATCTAGA 59.846 45.833 0.00 0.00 0.00 2.43
1888 1972 4.083484 TGTCGCACGTATGGATGTATCTAG 60.083 45.833 0.00 0.00 0.00 2.43
1889 1973 3.816523 TGTCGCACGTATGGATGTATCTA 59.183 43.478 0.00 0.00 0.00 1.98
1890 1974 2.621526 TGTCGCACGTATGGATGTATCT 59.378 45.455 0.00 0.00 0.00 1.98
1891 1975 3.007979 TGTCGCACGTATGGATGTATC 57.992 47.619 0.00 0.00 0.00 2.24
1892 1976 3.181479 ACTTGTCGCACGTATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
1893 1977 2.164827 ACTTGTCGCACGTATGGATGTA 59.835 45.455 0.00 0.00 0.00 2.29
1894 1978 1.067142 ACTTGTCGCACGTATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
1895 1979 1.640428 ACTTGTCGCACGTATGGATG 58.360 50.000 0.00 0.00 0.00 3.51
1896 1980 3.513680 TTACTTGTCGCACGTATGGAT 57.486 42.857 0.00 0.00 0.00 3.41
1897 1981 3.513680 ATTACTTGTCGCACGTATGGA 57.486 42.857 0.00 0.00 0.00 3.41
1898 1982 3.301579 CGAATTACTTGTCGCACGTATGG 60.302 47.826 0.00 0.00 0.00 2.74
1899 1983 3.301579 CCGAATTACTTGTCGCACGTATG 60.302 47.826 0.00 0.00 35.93 2.39
1900 1984 2.855963 CCGAATTACTTGTCGCACGTAT 59.144 45.455 0.00 0.00 35.93 3.06
1901 1985 2.095314 TCCGAATTACTTGTCGCACGTA 60.095 45.455 0.00 0.00 35.93 3.57
1902 1986 1.065358 CCGAATTACTTGTCGCACGT 58.935 50.000 0.00 0.00 35.93 4.49
1903 1987 1.342555 TCCGAATTACTTGTCGCACG 58.657 50.000 0.00 0.00 35.93 5.34
1904 1988 2.471749 CGTTCCGAATTACTTGTCGCAC 60.472 50.000 0.00 0.00 35.93 5.34
1905 1989 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
1906 1990 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
1907 1991 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
1908 1992 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1909 1993 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1910 1994 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1911 1995 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
1912 1996 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
1913 1997 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
1914 1998 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
1915 1999 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
1916 2000 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
1917 2001 0.038744 AGTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
1918 2002 0.911769 TAGTACTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
1919 2003 1.020437 GTAGTACTCCCTCCGTTCCG 58.980 60.000 0.00 0.00 0.00 4.30
1920 2004 2.022934 CAGTAGTACTCCCTCCGTTCC 58.977 57.143 0.00 0.00 0.00 3.62
1921 2005 2.720915 ACAGTAGTACTCCCTCCGTTC 58.279 52.381 0.00 0.00 0.00 3.95
1922 2006 2.895242 ACAGTAGTACTCCCTCCGTT 57.105 50.000 0.00 0.00 0.00 4.44
1923 2007 4.205587 CATTACAGTAGTACTCCCTCCGT 58.794 47.826 0.00 0.00 0.00 4.69
1924 2008 3.568853 CCATTACAGTAGTACTCCCTCCG 59.431 52.174 0.00 0.00 0.00 4.63
1925 2009 4.801164 TCCATTACAGTAGTACTCCCTCC 58.199 47.826 0.00 0.00 0.00 4.30
1926 2010 6.308566 AGATCCATTACAGTAGTACTCCCTC 58.691 44.000 0.00 0.00 0.00 4.30
1927 2011 6.282568 AGATCCATTACAGTAGTACTCCCT 57.717 41.667 0.00 0.00 0.00 4.20
1928 2012 8.524487 CAATAGATCCATTACAGTAGTACTCCC 58.476 40.741 0.00 0.00 0.00 4.30
1929 2013 9.298250 TCAATAGATCCATTACAGTAGTACTCC 57.702 37.037 0.00 0.00 0.00 3.85
1931 2015 9.642343 TGTCAATAGATCCATTACAGTAGTACT 57.358 33.333 0.00 0.00 0.00 2.73
1957 2041 6.040842 ACATCTGTAAACTGCAGACCAATTTT 59.959 34.615 23.35 11.72 44.52 1.82
1970 2054 1.800586 CTGCACGCACATCTGTAAACT 59.199 47.619 0.00 0.00 0.00 2.66
2000 2084 4.211794 GGCACAGGTTGAATCAAACAAATG 59.788 41.667 13.99 8.97 32.84 2.32
2002 2086 3.196469 TGGCACAGGTTGAATCAAACAAA 59.804 39.130 13.99 0.00 32.84 2.83
2003 2087 2.762887 TGGCACAGGTTGAATCAAACAA 59.237 40.909 13.99 0.00 32.84 2.83
2004 2088 2.382882 TGGCACAGGTTGAATCAAACA 58.617 42.857 13.99 0.00 32.84 2.83
2020 2104 3.327757 AGTGAGAAACCTCATAACTGGCA 59.672 43.478 0.00 0.00 42.11 4.92
2030 2114 3.330267 GTGATGTCCAGTGAGAAACCTC 58.670 50.000 0.00 0.00 0.00 3.85
2099 2242 3.431725 GCCCGGGAGAAAGCGTTG 61.432 66.667 29.31 0.00 0.00 4.10
2304 4518 3.066814 ACCGGTAGAGCGGTGGAC 61.067 66.667 23.85 0.00 37.09 4.02
2316 4530 0.472471 TCTTCCTTTCAAGCACCGGT 59.528 50.000 0.00 0.00 0.00 5.28
2546 4760 2.907897 GATCACCTGGAACTCGCCGG 62.908 65.000 0.00 0.00 0.00 6.13
2547 4761 1.519455 GATCACCTGGAACTCGCCG 60.519 63.158 0.00 0.00 0.00 6.46
2548 4762 0.250513 AAGATCACCTGGAACTCGCC 59.749 55.000 0.00 0.00 0.00 5.54
2549 4763 1.646189 GAAGATCACCTGGAACTCGC 58.354 55.000 0.00 0.00 0.00 5.03
2550 4764 1.469940 CGGAAGATCACCTGGAACTCG 60.470 57.143 0.00 0.00 0.00 4.18
2551 4765 1.134670 CCGGAAGATCACCTGGAACTC 60.135 57.143 0.00 0.00 0.00 3.01
2552 4766 0.905357 CCGGAAGATCACCTGGAACT 59.095 55.000 0.00 0.00 0.00 3.01
2553 4767 0.107654 CCCGGAAGATCACCTGGAAC 60.108 60.000 0.73 0.00 34.42 3.62
2554 4768 0.252513 TCCCGGAAGATCACCTGGAA 60.253 55.000 15.72 0.00 37.74 3.53
2555 4769 0.976073 GTCCCGGAAGATCACCTGGA 60.976 60.000 0.73 14.63 38.21 3.86
2556 4770 1.522569 GTCCCGGAAGATCACCTGG 59.477 63.158 0.73 11.30 33.93 4.45
2557 4771 1.141881 CGTCCCGGAAGATCACCTG 59.858 63.158 0.73 0.00 0.00 4.00
2558 4772 3.617368 CGTCCCGGAAGATCACCT 58.383 61.111 0.73 0.00 0.00 4.00
2635 4849 2.436646 CCACGGGGTGAGCATGAC 60.437 66.667 0.00 0.00 35.23 3.06
2688 4902 1.691195 TTGTGACGCTCCCCTTGTGA 61.691 55.000 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.