AutoCloner

Multiple sequence alignment - TraesCS4D01G294200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4D01G294200	chr4D	100.000	2508	0	0	1	2508	464659389	464661896	0.000000e+00	4632.0
1	TraesCS4D01G294200	chr4D	97.231	903	25	0	1606	2508	464669087	464669989	0.000000e+00	1530.0
2	TraesCS4D01G294200	chr4D	94.267	907	48	1	1606	2508	470383389	470382483	0.000000e+00	1384.0
3	TraesCS4D01G294200	chr4A	87.216	1674	99	31	1	1601	5553703	5552072	0.000000e+00	1799.0
4	TraesCS4D01G294200	chr4B	86.483	1672	100	48	1	1597	581067767	581069387	0.000000e+00	1720.0
5	TraesCS4D01G294200	chr3D	95.154	908	39	2	1606	2508	497217003	497217910	0.000000e+00	1428.0
6	TraesCS4D01G294200	chr3D	94.487	907	46	2	1606	2508	497225309	497226215	0.000000e+00	1395.0
7	TraesCS4D01G294200	chr5D	94.818	907	42	2	1606	2508	514217547	514218452	0.000000e+00	1410.0
8	TraesCS4D01G294200	chr6D	94.714	908	42	3	1606	2508	58616206	58615300	0.000000e+00	1406.0
9	TraesCS4D01G294200	chr6D	94.708	907	43	2	1606	2508	331307288	331308193	0.000000e+00	1404.0
10	TraesCS4D01G294200	chr6D	94.598	907	45	1	1606	2508	305068059	305068965	0.000000e+00	1400.0
11	TraesCS4D01G294200	chr6D	94.377	907	47	1	1606	2508	32325631	32324725	0.000000e+00	1389.0
12	TraesCS4D01G294200	chr6D	80.357	224	27	9	1061	1278	363063793	363064005	1.200000e-33	154.0
13	TraesCS4D01G294200	chr2A	77.193	399	57	22	1151	1516	686839337	686839734	4.230000e-48	202.0
14	TraesCS4D01G294200	chr2D	76.214	412	50	25	1151	1516	544610578	544610987	9.220000e-40	174.0
15	TraesCS4D01G294200	chr2D	92.500	40	1	2	46	83	473711592	473711553	3.490000e-04	56.5
16	TraesCS4D01G294200	chr6B	86.503	163	12	6	1123	1276	545253394	545253555	1.190000e-38	171.0
17	TraesCS4D01G294200	chr2B	95.238	105	5	0	1151	1255	650164649	650164753	1.540000e-37	167.0
18	TraesCS4D01G294200	chr6A	88.550	131	9	3	1122	1250	503769157	503769283	1.200000e-33	154.0
19	TraesCS4D01G294200	chr7A	86.765	68	9	0	42	109	719507311	719507244	2.680000e-10	76.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4D01G294200	chr4D	464659389	464661896	2507	False	4632	4632	100.000	1	2508	1	chr4D.!!$F1	2507
1	TraesCS4D01G294200	chr4D	464669087	464669989	902	False	1530	1530	97.231	1606	2508	1	chr4D.!!$F2	902
2	TraesCS4D01G294200	chr4D	470382483	470383389	906	True	1384	1384	94.267	1606	2508	1	chr4D.!!$R1	902
3	TraesCS4D01G294200	chr4A	5552072	5553703	1631	True	1799	1799	87.216	1	1601	1	chr4A.!!$R1	1600
4	TraesCS4D01G294200	chr4B	581067767	581069387	1620	False	1720	1720	86.483	1	1597	1	chr4B.!!$F1	1596
5	TraesCS4D01G294200	chr3D	497217003	497217910	907	False	1428	1428	95.154	1606	2508	1	chr3D.!!$F1	902
6	TraesCS4D01G294200	chr3D	497225309	497226215	906	False	1395	1395	94.487	1606	2508	1	chr3D.!!$F2	902
7	TraesCS4D01G294200	chr5D	514217547	514218452	905	False	1410	1410	94.818	1606	2508	1	chr5D.!!$F1	902
8	TraesCS4D01G294200	chr6D	58615300	58616206	906	True	1406	1406	94.714	1606	2508	1	chr6D.!!$R2	902
9	TraesCS4D01G294200	chr6D	331307288	331308193	905	False	1404	1404	94.708	1606	2508	1	chr6D.!!$F2	902
10	TraesCS4D01G294200	chr6D	305068059	305068965	906	False	1400	1400	94.598	1606	2508	1	chr6D.!!$F1	902
11	TraesCS4D01G294200	chr6D	32324725	32325631	906	True	1389	1389	94.377	1606	2508	1	chr6D.!!$R1	902

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
661	694	0.107703	GGCGATGTTGAGACCCATCA	60.108	55.0	0.0	0.0	37.84	3.07	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2169	2262	0.670854	GGACGACACTTGAAGGAGGC	60.671	60.0	0.0	0.0	0.0	4.7	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
46	47	1.908793	ACCGGCTAGCAGAGTGTGT	60.909	57.895	18.24	2.33	0.00	3.72
48	49	2.097038	CGGCTAGCAGAGTGTGTGC	61.097	63.158	18.24	0.00	41.54	4.57
50	51	2.734673	GCTAGCAGAGTGTGTGCGC	61.735	63.158	10.63	0.00	46.06	6.09
51	52	1.373371	CTAGCAGAGTGTGTGCGCA	60.373	57.895	5.66	5.66	46.06	6.09
61	64	1.419922	GTGTGCGCACGTTCATAGG	59.580	57.895	33.22	0.00	35.75	2.57
63	66	1.447140	GTGCGCACGTTCATAGGGA	60.447	57.895	26.77	0.00	0.00	4.20
74	77	4.649674	ACGTTCATAGGGATGAGTGTATGT	59.350	41.667	0.00	0.00	43.03	2.29
75	78	5.831525	ACGTTCATAGGGATGAGTGTATGTA	59.168	40.000	0.00	0.00	43.03	2.29
90	93	6.338146	AGTGTATGTATGTATGTTTGAGCGT	58.662	36.000	0.00	0.00	0.00	5.07
91	94	6.475727	AGTGTATGTATGTATGTTTGAGCGTC	59.524	38.462	0.00	0.00	0.00	5.19
93	96	7.646526	GTGTATGTATGTATGTTTGAGCGTCTA	59.353	37.037	0.00	0.00	0.00	2.59
97	100	3.495193	TGTATGTTTGAGCGTCTACGTC	58.505	45.455	4.24	1.90	42.22	4.34
99	102	2.787601	TGTTTGAGCGTCTACGTCTT	57.212	45.000	4.24	0.00	42.22	3.01
104	107	3.466712	TGAGCGTCTACGTCTTTACTG	57.533	47.619	4.24	0.00	42.22	2.74
143	146	5.969803	ACCAGTGGTGCATCAAAAATTTGAG	60.970	40.000	15.86	7.54	41.69	3.02
220	223	0.453793	CTTCCTCTGCTCGTCATCGT	59.546	55.000	0.00	0.00	38.33	3.73
293	300	2.730094	GCTGGCAAGTTGTGGTGG	59.270	61.111	4.48	0.00	0.00	4.61
450	457	1.227497	CTGCTCCCTCATCTTCGGC	60.227	63.158	0.00	0.00	0.00	5.54
462	469	3.398353	CTTCGGCCTCGTCGACCTC	62.398	68.421	10.58	0.00	40.10	3.85
463	470	4.710167	TCGGCCTCGTCGACCTCA	62.710	66.667	10.58	0.00	33.73	3.86
486	493	3.207669	GCCGCCTGCATCTTCCTG	61.208	66.667	0.00	0.00	40.77	3.86
495	502	1.453762	GCATCTTCCTGGCCATCAGC	61.454	60.000	5.51	0.00	42.05	4.26
572	605	4.473520	CAAGGGCTCCCGATGCGT	62.474	66.667	0.00	0.00	41.95	5.24
607	640	3.307059	CGGATCAAAGACAGGGAGAAAGT	60.307	47.826	0.00	0.00	0.00	2.66
618	651	1.606224	GGGAGAAAGTACGGCGAACAA	60.606	52.381	16.62	0.00	0.00	2.83
661	694	0.107703	GGCGATGTTGAGACCCATCA	60.108	55.000	0.00	0.00	37.84	3.07
715	748	3.641439	CGAAGCAAATGTAACGAGAGG	57.359	47.619	0.00	0.00	0.00	3.69
751	785	3.345808	GCACGAGCGCTTGACCAA	61.346	61.111	31.19	0.00	0.00	3.67
752	786	2.551270	CACGAGCGCTTGACCAAC	59.449	61.111	31.19	5.74	0.00	3.77
753	787	1.956170	CACGAGCGCTTGACCAACT	60.956	57.895	31.19	4.34	0.00	3.16
754	788	1.664965	ACGAGCGCTTGACCAACTC	60.665	57.895	31.19	4.41	0.00	3.01
792	826	2.982744	CTGACCGCTGTCTCGCTCA	61.983	63.158	9.79	0.00	42.28	4.26
833	867	2.750712	GTCAAACGCCTACTCTCTCTCT	59.249	50.000	0.00	0.00	0.00	3.10
834	868	3.011119	TCAAACGCCTACTCTCTCTCTC	58.989	50.000	0.00	0.00	0.00	3.20
835	869	3.013921	CAAACGCCTACTCTCTCTCTCT	58.986	50.000	0.00	0.00	0.00	3.10
836	870	2.614829	ACGCCTACTCTCTCTCTCTC	57.385	55.000	0.00	0.00	0.00	3.20
837	871	2.116238	ACGCCTACTCTCTCTCTCTCT	58.884	52.381	0.00	0.00	0.00	3.10
838	872	2.102588	ACGCCTACTCTCTCTCTCTCTC	59.897	54.545	0.00	0.00	0.00	3.20
839	873	2.365617	CGCCTACTCTCTCTCTCTCTCT	59.634	54.545	0.00	0.00	0.00	3.10
840	874	3.553096	CGCCTACTCTCTCTCTCTCTCTC	60.553	56.522	0.00	0.00	0.00	3.20
841	875	3.643792	GCCTACTCTCTCTCTCTCTCTCT	59.356	52.174	0.00	0.00	0.00	3.10
842	876	4.262249	GCCTACTCTCTCTCTCTCTCTCTC	60.262	54.167	0.00	0.00	0.00	3.20
884	918	2.596419	CGCTCTTCTCAACTCTTTAGCG	59.404	50.000	0.00	0.00	44.42	4.26
924	958	0.251297	CATCTTGCACCCCAACCTGA	60.251	55.000	0.00	0.00	0.00	3.86
961	995	2.357637	CCAGAATCTCAGTCTCGTCCTC	59.642	54.545	0.00	0.00	0.00	3.71
962	996	2.357637	CAGAATCTCAGTCTCGTCCTCC	59.642	54.545	0.00	0.00	0.00	4.30
963	997	2.241176	AGAATCTCAGTCTCGTCCTCCT	59.759	50.000	0.00	0.00	0.00	3.69
1003	1037	0.451135	CGCTAGCAAAAGACGCACAC	60.451	55.000	16.45	0.00	0.00	3.82
1059	1098	0.663568	CGCGAGGAAAAGTCGTCAGT	60.664	55.000	0.00	0.00	38.35	3.41
1060	1099	1.061485	GCGAGGAAAAGTCGTCAGTC	58.939	55.000	0.00	0.00	38.35	3.51
1094	1133	1.299468	CAGCCGCACGAGGAGATAC	60.299	63.158	0.00	0.00	0.00	2.24
1232	1295	0.809385	CGAGCTTCAAGTCCCTCGTA	59.191	55.000	5.11	0.00	41.47	3.43
1347	1430	1.084289	GCTATTTCACGTCCACCACC	58.916	55.000	0.00	0.00	0.00	4.61
1375	1461	4.687215	TCAGTGCAGCTGCGGACC	62.687	66.667	32.11	19.66	44.66	4.46
1482	1568	3.799755	GAACGGTGCCATGGCGAC	61.800	66.667	30.87	26.50	45.51	5.19
1576	1665	4.586001	TGGTTTTGACTCTAGTAACGAGGT	59.414	41.667	0.00	0.00	32.83	3.85
1583	1672	7.093322	TGACTCTAGTAACGAGGTAAATTCC	57.907	40.000	0.00	0.00	32.83	3.01
1594	1683	6.677913	ACGAGGTAAATTCCAGTCATTTTTG	58.322	36.000	0.00	0.00	0.00	2.44
1595	1684	6.488683	ACGAGGTAAATTCCAGTCATTTTTGA	59.511	34.615	0.00	0.00	0.00	2.69
1596	1685	7.176690	ACGAGGTAAATTCCAGTCATTTTTGAT	59.823	33.333	0.00	0.00	0.00	2.57
1597	1686	7.698130	CGAGGTAAATTCCAGTCATTTTTGATC	59.302	37.037	0.00	0.00	0.00	2.92
1601	1690	7.642071	AAATTCCAGTCATTTTTGATCGTTG	57.358	32.000	0.00	0.00	0.00	4.10
1602	1691	4.159377	TCCAGTCATTTTTGATCGTTGC	57.841	40.909	0.00	0.00	0.00	4.17
1603	1692	2.910482	CCAGTCATTTTTGATCGTTGCG	59.090	45.455	0.00	0.00	0.00	4.85
1604	1693	3.364864	CCAGTCATTTTTGATCGTTGCGA	60.365	43.478	0.00	0.00	41.13	5.10
1634	1723	1.886542	GCAACGAATCTCCTTGGGTTT	59.113	47.619	0.00	0.00	0.00	3.27
1645	1734	4.530946	TCTCCTTGGGTTTATCGTCTTCTT	59.469	41.667	0.00	0.00	0.00	2.52
1648	1737	5.012768	TCCTTGGGTTTATCGTCTTCTTCTT	59.987	40.000	0.00	0.00	0.00	2.52
1664	1753	2.759973	TTCTGGCGCGGGATCTCT	60.760	61.111	8.83	0.00	0.00	3.10
1683	1772	8.690884	GGATCTCTCATGAATATTCCGATCTTA	58.309	37.037	12.90	0.00	0.00	2.10
1845	1934	2.029288	CTGGCGTCGAATGTGCTGT	61.029	57.895	0.00	0.00	0.00	4.40
1921	2010	1.886313	CATTGCTCATCTCGGCGCT	60.886	57.895	7.64	0.00	0.00	5.92
2020	2109	1.272704	TGCTCTTGCCTAGACTCCAGA	60.273	52.381	0.00	0.00	38.71	3.86
2102	2195	0.171231	CTCGAACACTCCATCGCTCA	59.829	55.000	0.00	0.00	38.87	4.26
2169	2262	3.956199	TCCGATGTTTAGGTACCTAGTGG	59.044	47.826	20.79	16.13	39.83	4.00
2401	2494	1.902508	GTCCTTCAGTGTCATCCCTGA	59.097	52.381	0.00	0.00	35.97	3.86

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
7	8	1.263217	GTATAAGGGCATTCCAACGCG	59.737	52.381	3.53	3.53	38.24	6.01
46	47	0.809636	CATCCCTATGAACGTGCGCA	60.810	55.000	5.66	5.66	34.84	6.09
48	49	1.202417	ACTCATCCCTATGAACGTGCG	60.202	52.381	0.00	0.00	41.57	5.34
50	51	3.526931	ACACTCATCCCTATGAACGTG	57.473	47.619	0.00	6.33	41.57	4.49
51	52	4.649674	ACATACACTCATCCCTATGAACGT	59.350	41.667	0.00	0.00	41.57	3.99
56	59	8.753133	ACATACATACATACACTCATCCCTATG	58.247	37.037	0.00	0.00	0.00	2.23
61	64	8.887036	TCAAACATACATACATACACTCATCC	57.113	34.615	0.00	0.00	0.00	3.51
63	66	7.169813	CGCTCAAACATACATACATACACTCAT	59.830	37.037	0.00	0.00	0.00	2.90
74	77	5.065602	AGACGTAGACGCTCAAACATACATA	59.934	40.000	1.14	0.00	44.43	2.29
75	78	4.103357	GACGTAGACGCTCAAACATACAT	58.897	43.478	1.14	0.00	44.43	2.29
116	119	0.388659	TTTGATGCACCACTGGTTGC	59.611	50.000	12.99	12.99	31.02	4.17
119	122	4.128643	CAAATTTTTGATGCACCACTGGT	58.871	39.130	0.00	0.00	40.55	4.00
120	123	4.378774	TCAAATTTTTGATGCACCACTGG	58.621	39.130	1.66	0.00	41.88	4.00
121	124	5.051816	ACTCAAATTTTTGATGCACCACTG	58.948	37.500	6.21	0.00	45.26	3.66
123	126	5.754890	AGAACTCAAATTTTTGATGCACCAC	59.245	36.000	6.21	0.00	45.26	4.16
124	127	5.916318	AGAACTCAAATTTTTGATGCACCA	58.084	33.333	6.21	0.00	45.26	4.17
143	146	5.291371	GGAGGAGATTTGTAAGCGTTAGAAC	59.709	44.000	0.00	0.00	0.00	3.01
220	223	1.132453	CGAACAGAGGATGCAGACGTA	59.868	52.381	0.00	0.00	0.00	3.57
278	281	1.066573	CAAAACCACCACAACTTGCCA	60.067	47.619	0.00	0.00	0.00	4.92
572	605	4.097892	TCTTTGATCCGTCAATCGATCAGA	59.902	41.667	0.00	0.00	43.49	3.27
607	640	4.745751	CCCCGCTTGTTCGCCGTA	62.746	66.667	0.00	0.00	0.00	4.02
618	651	3.394836	GTGCTCCTTCTCCCCGCT	61.395	66.667	0.00	0.00	0.00	5.52
661	694	0.464916	TGCCTTCGATGCATGATGCT	60.465	50.000	19.19	3.99	45.31	3.79
715	748	0.725117	CGGGAGTATGGTTTTGACGC	59.275	55.000	0.00	0.00	0.00	5.19
751	785	0.114560	TTGGAGAACGGGAGAGGAGT	59.885	55.000	0.00	0.00	0.00	3.85
752	786	1.267121	TTTGGAGAACGGGAGAGGAG	58.733	55.000	0.00	0.00	0.00	3.69
753	787	1.623811	CTTTTGGAGAACGGGAGAGGA	59.376	52.381	0.00	0.00	0.00	3.71
754	788	1.946283	GCTTTTGGAGAACGGGAGAGG	60.946	57.143	0.00	0.00	0.00	3.69
792	826	1.915769	GGTCCTGAGGAGGCAGTGT	60.916	63.158	0.00	0.00	39.57	3.55
833	867	1.755959	GGCTGAATGCAGAGAGAGAGA	59.244	52.381	4.31	0.00	45.17	3.10
834	868	1.536496	CGGCTGAATGCAGAGAGAGAG	60.536	57.143	4.31	0.00	45.17	3.20
835	869	0.459078	CGGCTGAATGCAGAGAGAGA	59.541	55.000	4.31	0.00	45.17	3.10
836	870	1.152989	GCGGCTGAATGCAGAGAGAG	61.153	60.000	4.31	0.00	45.17	3.20
837	871	1.153489	GCGGCTGAATGCAGAGAGA	60.153	57.895	4.31	0.00	45.17	3.10
838	872	0.103755	TAGCGGCTGAATGCAGAGAG	59.896	55.000	13.86	0.00	45.17	3.20
839	873	0.179100	GTAGCGGCTGAATGCAGAGA	60.179	55.000	13.86	0.00	45.17	3.10
840	874	1.156645	GGTAGCGGCTGAATGCAGAG	61.157	60.000	13.86	0.00	45.17	3.35
841	875	1.153369	GGTAGCGGCTGAATGCAGA	60.153	57.895	13.86	0.00	45.17	4.26
842	876	1.450134	TGGTAGCGGCTGAATGCAG	60.450	57.895	13.86	0.00	45.15	4.41
924	958	6.201591	AGATTCTGGAGGTGAGAACTATTCT	58.798	40.000	0.00	0.00	44.21	2.40
961	995	5.552178	GTTCTGGAGGCCTTTATATACAGG	58.448	45.833	6.77	10.18	0.00	4.00
962	996	5.230942	CGTTCTGGAGGCCTTTATATACAG	58.769	45.833	6.77	0.00	0.00	2.74
963	997	4.502604	GCGTTCTGGAGGCCTTTATATACA	60.503	45.833	6.77	0.00	33.08	2.29
1003	1037	0.107456	AGCCTCAGGTTGTGTCTGTG	59.893	55.000	0.00	0.00	34.15	3.66
1059	1098	1.135915	GCTGGCTCTCTTCTTGATCGA	59.864	52.381	0.00	0.00	0.00	3.59
1060	1099	1.569708	GCTGGCTCTCTTCTTGATCG	58.430	55.000	0.00	0.00	0.00	3.69
1116	1179	1.882167	GATCGAGCAGAGCAGGTGC	60.882	63.158	0.00	0.00	41.54	5.01
1287	1370	4.742201	GTCTTCTCGGCTGCGGCA	62.742	66.667	21.31	1.29	40.87	5.69
1301	1384	1.213013	CCAGTAACAGCGCTCGTCT	59.787	57.895	7.13	0.37	0.00	4.18
1405	1491	2.335369	CTCCGAGTAATCGCCGGG	59.665	66.667	7.14	0.00	43.16	5.73
1481	1567	6.892456	TCAATAGAGGAGATCACTGTAACTGT	59.108	38.462	0.00	0.00	0.00	3.55
1482	1568	7.340122	TCAATAGAGGAGATCACTGTAACTG	57.660	40.000	0.00	0.00	0.00	3.16
1548	1635	7.439381	TCGTTACTAGAGTCAAAACCAGAAAT	58.561	34.615	0.00	0.00	0.00	2.17
1552	1639	5.162075	CCTCGTTACTAGAGTCAAAACCAG	58.838	45.833	0.00	0.00	34.08	4.00
1569	1658	6.894339	AAAATGACTGGAATTTACCTCGTT	57.106	33.333	0.00	0.00	0.00	3.85
1576	1665	7.328249	GCAACGATCAAAAATGACTGGAATTTA	59.672	33.333	0.00	0.00	0.00	1.40
1583	1672	3.809234	TCGCAACGATCAAAAATGACTG	58.191	40.909	0.00	0.00	0.00	3.51
1594	1683	2.102633	CGAAGACTACTCGCAACGATC	58.897	52.381	0.00	0.00	34.61	3.69
1595	1684	2.175530	CGAAGACTACTCGCAACGAT	57.824	50.000	0.00	0.00	34.61	3.73
1596	1685	3.670500	CGAAGACTACTCGCAACGA	57.330	52.632	0.00	0.00	0.00	3.85
1602	1691	1.959747	TTCGTTGCGAAGACTACTCG	58.040	50.000	0.00	0.00	41.05	4.18
1615	1704	4.034048	CGATAAACCCAAGGAGATTCGTTG	59.966	45.833	4.90	4.90	40.71	4.10
1634	1723	2.479730	GCGCCAGAAGAAGAAGACGATA	60.480	50.000	0.00	0.00	0.00	2.92
1645	1734	2.759973	AGATCCCGCGCCAGAAGA	60.760	61.111	0.00	0.00	0.00	2.87
1648	1737	3.219928	GAGAGATCCCGCGCCAGA	61.220	66.667	0.00	0.00	0.00	3.86
1683	1772	6.127054	TGGAGAAGAATGACGACCTGATAAAT	60.127	38.462	0.00	0.00	0.00	1.40
1845	1934	4.218417	GCAGCTTTCATCCAGGAGTTAAAA	59.782	41.667	0.00	0.00	0.00	1.52
1921	2010	6.853490	AGGACACTATCTACCAGATATGTGA	58.147	40.000	20.41	0.00	37.88	3.58
2020	2109	1.818674	GTTTTCCTTCGATGCACCCAT	59.181	47.619	0.00	0.00	0.00	4.00
2102	2195	1.549170	ACCGCCACTTTACGAGAAGAT	59.451	47.619	9.00	0.00	0.00	2.40
2169	2262	0.670854	GGACGACACTTGAAGGAGGC	60.671	60.000	0.00	0.00	0.00	4.70
2401	2494	2.742053	GTGTGTGTCAGCATTACCGATT	59.258	45.455	0.00	0.00	0.00	3.34

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.