Multiple sequence alignment - TraesCS4D01G294100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G294100 chr4D 100.000 9523 0 0 1 9523 464530237 464539759 0.000000e+00 17586.0
1 TraesCS4D01G294100 chr4D 82.329 1228 164 23 3772 4959 464249286 464248072 0.000000e+00 1016.0
2 TraesCS4D01G294100 chr4D 78.118 1403 197 44 4107 5450 446994437 446995788 0.000000e+00 789.0
3 TraesCS4D01G294100 chr4D 97.603 459 9 2 8917 9374 464544481 464544938 0.000000e+00 785.0
4 TraesCS4D01G294100 chr4D 83.418 790 105 19 4686 5451 440800807 440800020 0.000000e+00 710.0
5 TraesCS4D01G294100 chr4A 92.888 3445 174 31 5511 8917 5667394 5663983 0.000000e+00 4939.0
6 TraesCS4D01G294100 chr4A 90.601 3213 192 55 610 3772 5670641 5667489 0.000000e+00 4159.0
7 TraesCS4D01G294100 chr4A 85.866 566 65 14 8918 9481 642814536 642815088 1.070000e-163 588.0
8 TraesCS4D01G294100 chr4A 84.013 613 79 18 8918 9523 740751720 740751120 1.070000e-158 571.0
9 TraesCS4D01G294100 chr4A 82.222 405 67 4 5032 5433 584973838 584973436 2.550000e-90 344.0
10 TraesCS4D01G294100 chr4A 93.778 225 11 2 177 398 5671570 5671346 1.530000e-87 335.0
11 TraesCS4D01G294100 chr4A 93.213 221 13 2 394 613 5671118 5670899 3.320000e-84 324.0
12 TraesCS4D01G294100 chr4A 84.516 155 24 0 5296 5450 668364293 668364139 4.610000e-33 154.0
13 TraesCS4D01G294100 chr4A 94.000 50 2 1 3429 3477 274891996 274891947 3.690000e-09 75.0
14 TraesCS4D01G294100 chr4B 93.471 3247 149 25 5452 8674 580853222 580856429 0.000000e+00 4763.0
15 TraesCS4D01G294100 chr4B 89.959 1474 75 28 1437 2890 580850974 580852394 0.000000e+00 1834.0
16 TraesCS4D01G294100 chr4B 90.495 1010 42 29 394 1393 580849995 580850960 0.000000e+00 1284.0
17 TraesCS4D01G294100 chr4B 93.473 812 46 5 2965 3772 580852415 580853223 0.000000e+00 1199.0
18 TraesCS4D01G294100 chr4B 79.579 1807 248 70 3749 5450 428834955 428836745 0.000000e+00 1181.0
19 TraesCS4D01G294100 chr4B 89.119 193 15 5 175 363 580813981 580814171 1.600000e-57 235.0
20 TraesCS4D01G294100 chr6D 86.277 1727 177 25 3770 5450 291907186 291908898 0.000000e+00 1821.0
21 TraesCS4D01G294100 chr6D 84.993 1366 148 25 3768 5087 18715109 18716463 0.000000e+00 1334.0
22 TraesCS4D01G294100 chr6D 82.044 1125 145 39 3953 5035 366689495 366690604 0.000000e+00 905.0
23 TraesCS4D01G294100 chr6D 86.598 679 64 13 3772 4427 316318090 316317416 0.000000e+00 725.0
24 TraesCS4D01G294100 chr6D 79.682 566 82 20 4907 5450 82225412 82224858 2.510000e-100 377.0
25 TraesCS4D01G294100 chr6D 82.310 277 43 4 7015 7289 468143289 468143017 1.600000e-57 235.0
26 TraesCS4D01G294100 chr6D 82.488 217 17 10 5235 5450 18716865 18717061 4.570000e-38 171.0
27 TraesCS4D01G294100 chr1B 87.406 1588 123 29 3772 5295 304181728 304183302 0.000000e+00 1753.0
28 TraesCS4D01G294100 chr1B 84.124 611 81 15 8916 9523 503321575 503320978 2.310000e-160 577.0
29 TraesCS4D01G294100 chr1B 83.251 609 82 17 8918 9519 533609390 533609985 8.410000e-150 542.0
30 TraesCS4D01G294100 chr7D 85.590 1381 141 28 3944 5295 443427211 443428562 0.000000e+00 1395.0
31 TraesCS4D01G294100 chr7D 90.969 609 46 8 8918 9523 628683599 628684201 0.000000e+00 811.0
32 TraesCS4D01G294100 chr6B 86.873 1097 97 11 4239 5295 137428972 137430061 0.000000e+00 1184.0
33 TraesCS4D01G294100 chr6B 81.796 1225 180 29 3770 4956 277628483 277629702 0.000000e+00 987.0
34 TraesCS4D01G294100 chr6B 87.869 610 61 12 8918 9523 164883671 164884271 0.000000e+00 704.0
35 TraesCS4D01G294100 chr6B 76.667 270 44 13 5196 5450 498685196 498685461 2.160000e-26 132.0
36 TraesCS4D01G294100 chr2D 79.487 1716 252 59 3820 5450 542640725 542642425 0.000000e+00 1127.0
37 TraesCS4D01G294100 chr2D 80.172 812 110 27 4685 5450 383165218 383164412 2.320000e-155 560.0
38 TraesCS4D01G294100 chr2D 76.160 776 138 38 7760 8519 403212606 403213350 1.950000e-96 364.0
39 TraesCS4D01G294100 chr1D 81.030 1476 188 45 3936 5344 61979913 61978463 0.000000e+00 1090.0
40 TraesCS4D01G294100 chr5D 80.231 1472 216 39 4042 5450 489301434 489299975 0.000000e+00 1037.0
41 TraesCS4D01G294100 chr5D 78.916 1494 219 47 4041 5453 286931974 286930496 0.000000e+00 926.0
42 TraesCS4D01G294100 chr5D 80.791 1239 171 33 3770 4969 244214961 244213751 0.000000e+00 907.0
43 TraesCS4D01G294100 chr5D 83.750 240 31 6 7053 7289 360131604 360131838 4.480000e-53 220.0
44 TraesCS4D01G294100 chr5D 78.777 278 42 11 7015 7289 21206537 21206274 4.570000e-38 171.0
45 TraesCS4D01G294100 chr5D 78.286 175 32 5 2195 2369 505898148 505898316 3.640000e-19 108.0
46 TraesCS4D01G294100 chr3A 79.824 1477 224 41 4041 5455 616466244 616467708 0.000000e+00 1009.0
47 TraesCS4D01G294100 chr3A 80.769 234 23 10 5238 5449 127968665 127968898 7.650000e-36 163.0
48 TraesCS4D01G294100 chr3D 77.581 1811 259 69 3770 5449 121648222 121650016 0.000000e+00 959.0
49 TraesCS4D01G294100 chr3D 84.466 824 99 7 4554 5351 615488809 615487989 0.000000e+00 785.0
50 TraesCS4D01G294100 chr3D 88.099 605 53 7 3789 4375 410381572 410382175 0.000000e+00 701.0
51 TraesCS4D01G294100 chr3D 80.234 941 133 25 3862 4756 136410118 136411051 0.000000e+00 658.0
52 TraesCS4D01G294100 chr5A 79.305 1353 196 52 4014 5300 32878151 32879485 0.000000e+00 870.0
53 TraesCS4D01G294100 chr5A 84.262 610 79 16 8918 9523 638544300 638544896 6.410000e-161 579.0
54 TraesCS4D01G294100 chr3B 82.331 798 107 17 4683 5450 39647865 39648658 0.000000e+00 662.0
55 TraesCS4D01G294100 chr3B 76.056 710 99 34 3766 4405 447984594 447985302 4.320000e-78 303.0
56 TraesCS4D01G294100 chr3B 77.193 342 51 12 5134 5450 165811789 165811450 3.540000e-39 174.0
57 TraesCS4D01G294100 chr2A 84.452 611 78 16 8917 9523 34822069 34822666 3.830000e-163 586.0
58 TraesCS4D01G294100 chr2A 80.579 242 36 10 7053 7289 58357217 58356982 9.830000e-40 176.0
59 TraesCS4D01G294100 chr2A 78.339 277 41 14 7015 7289 744778565 744778824 2.750000e-35 161.0
60 TraesCS4D01G294100 chr2B 76.000 775 141 38 7760 8519 477331333 477332077 9.090000e-95 359.0
61 TraesCS4D01G294100 chrUn 82.310 277 43 4 7015 7289 333063357 333063085 1.600000e-57 235.0
62 TraesCS4D01G294100 chr6A 81.786 280 41 8 7015 7289 84701562 84701836 9.620000e-55 226.0
63 TraesCS4D01G294100 chr6A 78.929 280 47 10 7015 7289 27073902 27073630 7.600000e-41 180.0
64 TraesCS4D01G294100 chr7A 88.462 78 9 0 2287 2364 133674336 133674413 2.830000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G294100 chr4D 464530237 464539759 9522 False 17586.00 17586 100.0000 1 9523 1 chr4D.!!$F2 9522
1 TraesCS4D01G294100 chr4D 464248072 464249286 1214 True 1016.00 1016 82.3290 3772 4959 1 chr4D.!!$R2 1187
2 TraesCS4D01G294100 chr4D 446994437 446995788 1351 False 789.00 789 78.1180 4107 5450 1 chr4D.!!$F1 1343
3 TraesCS4D01G294100 chr4D 440800020 440800807 787 True 710.00 710 83.4180 4686 5451 1 chr4D.!!$R1 765
4 TraesCS4D01G294100 chr4A 5663983 5671570 7587 True 2439.25 4939 92.6200 177 8917 4 chr4A.!!$R5 8740
5 TraesCS4D01G294100 chr4A 642814536 642815088 552 False 588.00 588 85.8660 8918 9481 1 chr4A.!!$F1 563
6 TraesCS4D01G294100 chr4A 740751120 740751720 600 True 571.00 571 84.0130 8918 9523 1 chr4A.!!$R4 605
7 TraesCS4D01G294100 chr4B 580849995 580856429 6434 False 2270.00 4763 91.8495 394 8674 4 chr4B.!!$F3 8280
8 TraesCS4D01G294100 chr4B 428834955 428836745 1790 False 1181.00 1181 79.5790 3749 5450 1 chr4B.!!$F1 1701
9 TraesCS4D01G294100 chr6D 291907186 291908898 1712 False 1821.00 1821 86.2770 3770 5450 1 chr6D.!!$F1 1680
10 TraesCS4D01G294100 chr6D 366689495 366690604 1109 False 905.00 905 82.0440 3953 5035 1 chr6D.!!$F2 1082
11 TraesCS4D01G294100 chr6D 18715109 18717061 1952 False 752.50 1334 83.7405 3768 5450 2 chr6D.!!$F3 1682
12 TraesCS4D01G294100 chr6D 316317416 316318090 674 True 725.00 725 86.5980 3772 4427 1 chr6D.!!$R2 655
13 TraesCS4D01G294100 chr6D 82224858 82225412 554 True 377.00 377 79.6820 4907 5450 1 chr6D.!!$R1 543
14 TraesCS4D01G294100 chr1B 304181728 304183302 1574 False 1753.00 1753 87.4060 3772 5295 1 chr1B.!!$F1 1523
15 TraesCS4D01G294100 chr1B 503320978 503321575 597 True 577.00 577 84.1240 8916 9523 1 chr1B.!!$R1 607
16 TraesCS4D01G294100 chr1B 533609390 533609985 595 False 542.00 542 83.2510 8918 9519 1 chr1B.!!$F2 601
17 TraesCS4D01G294100 chr7D 443427211 443428562 1351 False 1395.00 1395 85.5900 3944 5295 1 chr7D.!!$F1 1351
18 TraesCS4D01G294100 chr7D 628683599 628684201 602 False 811.00 811 90.9690 8918 9523 1 chr7D.!!$F2 605
19 TraesCS4D01G294100 chr6B 137428972 137430061 1089 False 1184.00 1184 86.8730 4239 5295 1 chr6B.!!$F1 1056
20 TraesCS4D01G294100 chr6B 277628483 277629702 1219 False 987.00 987 81.7960 3770 4956 1 chr6B.!!$F3 1186
21 TraesCS4D01G294100 chr6B 164883671 164884271 600 False 704.00 704 87.8690 8918 9523 1 chr6B.!!$F2 605
22 TraesCS4D01G294100 chr2D 542640725 542642425 1700 False 1127.00 1127 79.4870 3820 5450 1 chr2D.!!$F2 1630
23 TraesCS4D01G294100 chr2D 383164412 383165218 806 True 560.00 560 80.1720 4685 5450 1 chr2D.!!$R1 765
24 TraesCS4D01G294100 chr2D 403212606 403213350 744 False 364.00 364 76.1600 7760 8519 1 chr2D.!!$F1 759
25 TraesCS4D01G294100 chr1D 61978463 61979913 1450 True 1090.00 1090 81.0300 3936 5344 1 chr1D.!!$R1 1408
26 TraesCS4D01G294100 chr5D 489299975 489301434 1459 True 1037.00 1037 80.2310 4042 5450 1 chr5D.!!$R4 1408
27 TraesCS4D01G294100 chr5D 286930496 286931974 1478 True 926.00 926 78.9160 4041 5453 1 chr5D.!!$R3 1412
28 TraesCS4D01G294100 chr5D 244213751 244214961 1210 True 907.00 907 80.7910 3770 4969 1 chr5D.!!$R2 1199
29 TraesCS4D01G294100 chr3A 616466244 616467708 1464 False 1009.00 1009 79.8240 4041 5455 1 chr3A.!!$F2 1414
30 TraesCS4D01G294100 chr3D 121648222 121650016 1794 False 959.00 959 77.5810 3770 5449 1 chr3D.!!$F1 1679
31 TraesCS4D01G294100 chr3D 615487989 615488809 820 True 785.00 785 84.4660 4554 5351 1 chr3D.!!$R1 797
32 TraesCS4D01G294100 chr3D 410381572 410382175 603 False 701.00 701 88.0990 3789 4375 1 chr3D.!!$F3 586
33 TraesCS4D01G294100 chr3D 136410118 136411051 933 False 658.00 658 80.2340 3862 4756 1 chr3D.!!$F2 894
34 TraesCS4D01G294100 chr5A 32878151 32879485 1334 False 870.00 870 79.3050 4014 5300 1 chr5A.!!$F1 1286
35 TraesCS4D01G294100 chr5A 638544300 638544896 596 False 579.00 579 84.2620 8918 9523 1 chr5A.!!$F2 605
36 TraesCS4D01G294100 chr3B 39647865 39648658 793 False 662.00 662 82.3310 4683 5450 1 chr3B.!!$F1 767
37 TraesCS4D01G294100 chr3B 447984594 447985302 708 False 303.00 303 76.0560 3766 4405 1 chr3B.!!$F2 639
38 TraesCS4D01G294100 chr2A 34822069 34822666 597 False 586.00 586 84.4520 8917 9523 1 chr2A.!!$F1 606
39 TraesCS4D01G294100 chr2B 477331333 477332077 744 False 359.00 359 76.0000 7760 8519 1 chr2B.!!$F1 759

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.036010 ATCGTGGTTCCTGGCTTCAG 60.036 55.000 0.00 0.00 38.21 3.02 F
1470 1999 0.106868 TACTAGTGCTAGCTCGGCCA 60.107 55.000 17.23 0.00 36.66 5.36 F
2022 2585 0.179097 TTCCCAACAAGTTTTGCCGC 60.179 50.000 0.00 0.00 0.00 6.53 F
2024 2587 1.142748 CCAACAAGTTTTGCCGCCA 59.857 52.632 0.00 0.00 0.00 5.69 F
2025 2588 1.151172 CCAACAAGTTTTGCCGCCAC 61.151 55.000 0.00 0.00 0.00 5.01 F
2026 2589 1.226831 AACAAGTTTTGCCGCCACG 60.227 52.632 0.00 0.00 0.00 4.94 F
2694 3266 1.423541 TGTCATTGTGGCCCAAGTAGT 59.576 47.619 0.00 0.00 36.25 2.73 F
4165 4839 1.190833 CCTCCTCCGGCATCTGCTAT 61.191 60.000 0.00 0.00 41.70 2.97 F
4623 5418 2.349755 GGCTTGGTACTCCGCCAA 59.650 61.111 12.73 0.00 43.04 4.52 F
6499 7709 0.102481 GCAAGCTGGATCCTGCAATG 59.898 55.000 36.19 32.35 42.23 2.82 F
6839 8049 1.277557 GAGCTTTCTCTTCCTCCAGCA 59.722 52.381 0.00 0.00 36.42 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1767 2327 0.110486 ATTCGGCAGTGGTTCTTGGT 59.890 50.000 0.00 0.00 0.00 3.67 R
2424 2990 0.473886 ACCCAGTGCTACCAAGTCCT 60.474 55.000 0.00 0.00 0.00 3.85 R
3197 3779 0.979187 GAACCCCGGTACCATCTCCA 60.979 60.000 13.54 0.00 0.00 3.86 R
3656 4239 2.308570 TGGTGCTTTATCCATGGAGTGT 59.691 45.455 21.33 6.04 0.00 3.55 R
3894 4482 2.837291 GCATAAATGGGCCGGCCA 60.837 61.111 44.46 30.82 37.98 5.36 R
3973 4593 8.795842 TTTCTAGTTGTTTAAGTGGACTTTGA 57.204 30.769 0.00 0.00 37.40 2.69 R
4196 4878 1.002274 GGCTTGAGGAGGAGGAGGA 59.998 63.158 0.00 0.00 0.00 3.71 R
5419 6583 0.960364 ATGCAGCGACCCAAATCGTT 60.960 50.000 0.00 0.00 44.13 3.85 R
6539 7749 0.827925 AGTCCGTTGAGCTGACCAGA 60.828 55.000 0.00 0.00 32.62 3.86 R
7563 8782 1.203523 GTGAAGCAGGACTCGATCACT 59.796 52.381 4.66 0.00 35.49 3.41 R
8771 10023 0.252742 GTGAAGGGGAGGGAGAGGAA 60.253 60.000 0.00 0.00 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.940166 GAGGTGGTATTTAATAATAAACCAACG 57.060 33.333 6.31 0.00 38.74 4.10
36 37 9.683870 AGGTGGTATTTAATAATAAACCAACGA 57.316 29.630 6.31 0.00 38.74 3.85
46 47 8.455598 AATAATAAACCAACGAAAAATGACCG 57.544 30.769 0.00 0.00 0.00 4.79
47 48 2.128367 AACCAACGAAAAATGACCGC 57.872 45.000 0.00 0.00 0.00 5.68
48 49 1.025812 ACCAACGAAAAATGACCGCA 58.974 45.000 0.00 0.00 0.00 5.69
49 50 1.405821 ACCAACGAAAAATGACCGCAA 59.594 42.857 0.00 0.00 0.00 4.85
50 51 2.035321 ACCAACGAAAAATGACCGCAAT 59.965 40.909 0.00 0.00 0.00 3.56
51 52 3.253677 ACCAACGAAAAATGACCGCAATA 59.746 39.130 0.00 0.00 0.00 1.90
52 53 4.082463 ACCAACGAAAAATGACCGCAATAT 60.082 37.500 0.00 0.00 0.00 1.28
53 54 4.265085 CCAACGAAAAATGACCGCAATATG 59.735 41.667 0.00 0.00 0.00 1.78
54 55 3.434637 ACGAAAAATGACCGCAATATGC 58.565 40.909 0.00 0.00 40.69 3.14
64 65 3.988459 GCAATATGCGGTTGACGTT 57.012 47.368 0.00 0.00 46.52 3.99
65 66 1.810197 GCAATATGCGGTTGACGTTC 58.190 50.000 0.00 0.00 46.52 3.95
66 67 1.531058 GCAATATGCGGTTGACGTTCC 60.531 52.381 0.00 0.00 46.52 3.62
67 68 1.063469 CAATATGCGGTTGACGTTCCC 59.937 52.381 0.00 0.00 46.52 3.97
68 69 0.250793 ATATGCGGTTGACGTTCCCA 59.749 50.000 0.00 0.00 46.52 4.37
69 70 0.250793 TATGCGGTTGACGTTCCCAT 59.749 50.000 0.00 2.70 46.52 4.00
70 71 1.305219 ATGCGGTTGACGTTCCCATG 61.305 55.000 0.00 0.00 46.52 3.66
71 72 2.686816 GCGGTTGACGTTCCCATGG 61.687 63.158 4.14 4.14 46.52 3.66
72 73 1.004320 CGGTTGACGTTCCCATGGA 60.004 57.895 15.22 0.00 37.93 3.41
73 74 1.019278 CGGTTGACGTTCCCATGGAG 61.019 60.000 15.22 3.25 37.93 3.86
74 75 0.676782 GGTTGACGTTCCCATGGAGG 60.677 60.000 15.22 2.00 31.21 4.30
105 106 4.917474 ACGATTCGTTTACCCCGG 57.083 55.556 5.75 0.00 36.35 5.73
106 107 2.275880 ACGATTCGTTTACCCCGGA 58.724 52.632 0.73 0.00 36.35 5.14
107 108 0.826062 ACGATTCGTTTACCCCGGAT 59.174 50.000 0.73 0.00 36.35 4.18
108 109 1.214367 CGATTCGTTTACCCCGGATG 58.786 55.000 0.73 0.00 0.00 3.51
109 110 1.589803 GATTCGTTTACCCCGGATGG 58.410 55.000 0.73 0.00 0.00 3.51
110 111 0.913924 ATTCGTTTACCCCGGATGGT 59.086 50.000 0.73 5.05 42.62 3.55
111 112 0.691904 TTCGTTTACCCCGGATGGTT 59.308 50.000 0.73 0.00 39.91 3.67
112 113 0.249955 TCGTTTACCCCGGATGGTTC 59.750 55.000 0.73 0.00 39.91 3.62
113 114 0.036199 CGTTTACCCCGGATGGTTCA 60.036 55.000 0.73 0.00 39.91 3.18
114 115 1.611148 CGTTTACCCCGGATGGTTCAA 60.611 52.381 0.73 0.00 39.91 2.69
115 116 2.730382 GTTTACCCCGGATGGTTCAAT 58.270 47.619 0.73 0.00 39.91 2.57
116 117 2.686405 GTTTACCCCGGATGGTTCAATC 59.314 50.000 0.73 0.00 39.91 2.67
117 118 0.466543 TACCCCGGATGGTTCAATCG 59.533 55.000 0.73 0.00 39.91 3.34
118 119 1.268992 ACCCCGGATGGTTCAATCGA 61.269 55.000 0.73 0.00 33.91 3.59
119 120 0.532862 CCCCGGATGGTTCAATCGAG 60.533 60.000 0.73 0.00 0.00 4.04
120 121 1.160329 CCCGGATGGTTCAATCGAGC 61.160 60.000 0.73 0.00 0.00 5.03
121 122 1.490693 CCGGATGGTTCAATCGAGCG 61.491 60.000 0.00 0.00 0.00 5.03
122 123 0.527600 CGGATGGTTCAATCGAGCGA 60.528 55.000 0.00 0.00 0.00 4.93
123 124 1.651987 GGATGGTTCAATCGAGCGAA 58.348 50.000 0.00 0.00 0.00 4.70
124 125 1.327764 GGATGGTTCAATCGAGCGAAC 59.672 52.381 17.27 17.27 40.64 3.95
128 129 2.721129 GTTCAATCGAGCGAACCATC 57.279 50.000 15.47 0.00 36.36 3.51
141 142 2.671070 CCATCGTGGTTCCTGGCT 59.329 61.111 0.00 0.00 31.35 4.75
142 143 1.002134 CCATCGTGGTTCCTGGCTT 60.002 57.895 0.00 0.00 31.35 4.35
143 144 1.026718 CCATCGTGGTTCCTGGCTTC 61.027 60.000 0.00 0.00 31.35 3.86
144 145 0.321564 CATCGTGGTTCCTGGCTTCA 60.322 55.000 0.00 0.00 0.00 3.02
145 146 0.036010 ATCGTGGTTCCTGGCTTCAG 60.036 55.000 0.00 0.00 38.21 3.02
146 147 2.328099 CGTGGTTCCTGGCTTCAGC 61.328 63.158 0.00 0.00 37.19 4.26
147 148 2.032528 TGGTTCCTGGCTTCAGCG 59.967 61.111 0.00 0.00 43.26 5.18
148 149 2.747855 GGTTCCTGGCTTCAGCGG 60.748 66.667 0.00 0.00 43.26 5.52
149 150 2.747855 GTTCCTGGCTTCAGCGGG 60.748 66.667 3.79 3.79 43.26 6.13
150 151 3.249189 TTCCTGGCTTCAGCGGGT 61.249 61.111 8.62 0.00 43.26 5.28
151 152 3.254024 TTCCTGGCTTCAGCGGGTC 62.254 63.158 8.62 0.00 43.26 4.46
153 154 4.379243 CTGGCTTCAGCGGGTCGT 62.379 66.667 0.00 0.00 43.26 4.34
154 155 3.883744 CTGGCTTCAGCGGGTCGTT 62.884 63.158 0.00 0.00 43.26 3.85
155 156 3.119096 GGCTTCAGCGGGTCGTTC 61.119 66.667 0.00 0.00 43.26 3.95
156 157 2.357034 GCTTCAGCGGGTCGTTCA 60.357 61.111 0.00 0.00 0.00 3.18
157 158 1.959226 GCTTCAGCGGGTCGTTCAA 60.959 57.895 0.00 0.00 0.00 2.69
158 159 1.298859 GCTTCAGCGGGTCGTTCAAT 61.299 55.000 0.00 0.00 0.00 2.57
159 160 1.156736 CTTCAGCGGGTCGTTCAATT 58.843 50.000 0.00 0.00 0.00 2.32
160 161 2.343101 CTTCAGCGGGTCGTTCAATTA 58.657 47.619 0.00 0.00 0.00 1.40
161 162 2.459060 TCAGCGGGTCGTTCAATTAA 57.541 45.000 0.00 0.00 0.00 1.40
162 163 2.070783 TCAGCGGGTCGTTCAATTAAC 58.929 47.619 0.00 0.00 34.52 2.01
163 164 2.073816 CAGCGGGTCGTTCAATTAACT 58.926 47.619 0.00 0.00 35.81 2.24
164 165 2.093783 CAGCGGGTCGTTCAATTAACTC 59.906 50.000 0.00 0.00 35.81 3.01
165 166 2.070783 GCGGGTCGTTCAATTAACTCA 58.929 47.619 0.00 0.00 35.81 3.41
166 167 2.159747 GCGGGTCGTTCAATTAACTCAC 60.160 50.000 0.00 0.00 35.81 3.51
167 168 3.323243 CGGGTCGTTCAATTAACTCACT 58.677 45.455 0.00 0.00 35.81 3.41
168 169 3.744426 CGGGTCGTTCAATTAACTCACTT 59.256 43.478 0.00 0.00 35.81 3.16
169 170 4.212636 CGGGTCGTTCAATTAACTCACTTT 59.787 41.667 0.00 0.00 35.81 2.66
170 171 5.277634 CGGGTCGTTCAATTAACTCACTTTT 60.278 40.000 0.00 0.00 35.81 2.27
171 172 6.500910 GGGTCGTTCAATTAACTCACTTTTT 58.499 36.000 0.00 0.00 35.81 1.94
172 173 7.518689 CGGGTCGTTCAATTAACTCACTTTTTA 60.519 37.037 0.00 0.00 35.81 1.52
173 174 8.294577 GGGTCGTTCAATTAACTCACTTTTTAT 58.705 33.333 0.00 0.00 35.81 1.40
174 175 9.326339 GGTCGTTCAATTAACTCACTTTTTATC 57.674 33.333 0.00 0.00 35.81 1.75
175 176 9.872757 GTCGTTCAATTAACTCACTTTTTATCA 57.127 29.630 0.00 0.00 35.81 2.15
206 207 0.837940 GGAGAAAATCGGGTAGGCCT 59.162 55.000 11.78 11.78 34.45 5.19
218 219 3.387050 CGGGTAGGCCTAATTAACTCACT 59.613 47.826 15.83 0.00 34.45 3.41
449 685 8.960591 CCAATAGATATTTTTCAGTCCTTGTGT 58.039 33.333 0.00 0.00 0.00 3.72
490 726 0.530650 GCTAGCTAATCCGCAGCACA 60.531 55.000 7.70 0.00 41.66 4.57
517 754 6.242107 CACGTGCGATATCTGTACTATACTC 58.758 44.000 0.82 0.00 0.00 2.59
623 1121 2.490217 CGAACCCAGCGAGATCGT 59.510 61.111 3.94 0.00 42.22 3.73
624 1122 1.874019 CGAACCCAGCGAGATCGTG 60.874 63.158 3.94 1.61 42.22 4.35
687 1186 1.722011 AAAATACTGCACCCGTCTCG 58.278 50.000 0.00 0.00 0.00 4.04
718 1219 1.000607 TCTCTCGACCGGTCAAACAAG 60.001 52.381 32.80 20.75 0.00 3.16
781 1291 1.284982 CTCCGTTCACGCTTGACTGG 61.285 60.000 0.00 0.00 38.18 4.00
805 1315 6.413018 AAATATAAAACTCGAACGGGACAC 57.587 37.500 0.00 0.00 0.00 3.67
829 1339 1.135517 GCTCACACGACTCTTCTCTCC 60.136 57.143 0.00 0.00 0.00 3.71
852 1362 3.431683 GACTCGGCTCCGTCGTACG 62.432 68.421 9.53 9.53 42.11 3.67
866 1379 2.030213 GTCGTACGGCACTACTCTACTG 59.970 54.545 16.32 0.00 0.00 2.74
914 1432 0.319728 CACCTCACCTCACCTCACTG 59.680 60.000 0.00 0.00 0.00 3.66
951 1469 3.569701 CAGTAAACAACACAGCCAGGAAT 59.430 43.478 0.00 0.00 0.00 3.01
1099 1617 4.785512 ACGAGCTCTGCTTCGCGG 62.786 66.667 12.85 0.00 39.88 6.46
1360 1884 4.760840 GCGTCGTGCTCGAGCTCA 62.761 66.667 35.27 20.06 46.96 4.26
1439 1968 3.922910 TCAATCAGAGCTGTCAGTTCAG 58.077 45.455 17.76 10.61 38.35 3.02
1440 1969 3.323115 TCAATCAGAGCTGTCAGTTCAGT 59.677 43.478 17.76 1.83 37.70 3.41
1441 1970 4.063689 CAATCAGAGCTGTCAGTTCAGTT 58.936 43.478 17.76 7.27 37.70 3.16
1442 1971 3.377346 TCAGAGCTGTCAGTTCAGTTC 57.623 47.619 17.76 3.12 42.93 3.01
1443 1972 2.695147 TCAGAGCTGTCAGTTCAGTTCA 59.305 45.455 17.76 0.00 44.28 3.18
1470 1999 0.106868 TACTAGTGCTAGCTCGGCCA 60.107 55.000 17.23 0.00 36.66 5.36
1479 2008 0.246635 TAGCTCGGCCAAGTTGACTC 59.753 55.000 2.24 0.00 0.00 3.36
1488 2017 1.616994 CCAAGTTGACTCCCCCAATCC 60.617 57.143 3.87 0.00 0.00 3.01
1494 2023 0.259065 GACTCCCCCAATCCCCTTTC 59.741 60.000 0.00 0.00 0.00 2.62
1537 2066 6.753107 AAATATTCGTTTCGATCCCTGTTT 57.247 33.333 0.00 0.00 35.23 2.83
1673 2223 3.567576 CCAATAATGGCGTGTTTGTGA 57.432 42.857 0.00 0.00 40.58 3.58
1674 2224 3.906998 CCAATAATGGCGTGTTTGTGAA 58.093 40.909 0.00 0.00 40.58 3.18
1675 2225 4.493547 CCAATAATGGCGTGTTTGTGAAT 58.506 39.130 0.00 0.00 40.58 2.57
1708 2268 4.988540 GTCATGTGAGTGTTTGCAGTAGTA 59.011 41.667 0.00 0.00 0.00 1.82
1709 2269 5.119279 GTCATGTGAGTGTTTGCAGTAGTAG 59.881 44.000 0.00 0.00 0.00 2.57
1710 2270 3.990092 TGTGAGTGTTTGCAGTAGTAGG 58.010 45.455 0.00 0.00 0.00 3.18
1711 2271 3.639561 TGTGAGTGTTTGCAGTAGTAGGA 59.360 43.478 0.00 0.00 0.00 2.94
1741 2301 3.202151 TCCCTCTACATTTTCCATGGACC 59.798 47.826 15.91 0.00 0.00 4.46
1744 2304 4.884164 CCTCTACATTTTCCATGGACCTTC 59.116 45.833 15.91 0.00 0.00 3.46
1765 2325 7.018952 ACCTTCACTCCCCATGATATGATAAAT 59.981 37.037 0.00 0.00 0.00 1.40
1767 2327 7.572546 TCACTCCCCATGATATGATAAATGA 57.427 36.000 0.00 0.00 0.00 2.57
1789 2349 2.614057 CCAAGAACCACTGCCGAATATC 59.386 50.000 0.00 0.00 0.00 1.63
1835 2397 1.487142 TCTGTTTTTCTGTGACCGGGA 59.513 47.619 6.32 0.00 0.00 5.14
1927 2490 1.144503 CCCCTCCCCATCATTTCTCTG 59.855 57.143 0.00 0.00 0.00 3.35
1933 2496 5.767168 CCTCCCCATCATTTCTCTGTTATTC 59.233 44.000 0.00 0.00 0.00 1.75
1936 2499 7.413446 TCCCCATCATTTCTCTGTTATTCTTT 58.587 34.615 0.00 0.00 0.00 2.52
1995 2558 3.488489 CCAGATTTTACTTTTGTCCGCG 58.512 45.455 0.00 0.00 0.00 6.46
1996 2559 2.908626 CAGATTTTACTTTTGTCCGCGC 59.091 45.455 0.00 0.00 0.00 6.86
2011 2574 2.902846 CGCCCACGTTTCCCAACA 60.903 61.111 0.00 0.00 32.54 3.33
2022 2585 0.179097 TTCCCAACAAGTTTTGCCGC 60.179 50.000 0.00 0.00 0.00 6.53
2023 2586 1.594021 CCCAACAAGTTTTGCCGCC 60.594 57.895 0.00 0.00 0.00 6.13
2024 2587 1.142748 CCAACAAGTTTTGCCGCCA 59.857 52.632 0.00 0.00 0.00 5.69
2025 2588 1.151172 CCAACAAGTTTTGCCGCCAC 61.151 55.000 0.00 0.00 0.00 5.01
2026 2589 1.226831 AACAAGTTTTGCCGCCACG 60.227 52.632 0.00 0.00 0.00 4.94
2027 2590 1.939769 AACAAGTTTTGCCGCCACGT 61.940 50.000 0.00 0.00 0.00 4.49
2028 2591 1.657181 CAAGTTTTGCCGCCACGTC 60.657 57.895 0.00 0.00 0.00 4.34
2029 2592 2.841160 AAGTTTTGCCGCCACGTCC 61.841 57.895 0.00 0.00 0.00 4.79
2030 2593 3.587933 GTTTTGCCGCCACGTCCA 61.588 61.111 0.00 0.00 0.00 4.02
2031 2594 3.587933 TTTTGCCGCCACGTCCAC 61.588 61.111 0.00 0.00 0.00 4.02
2062 2625 2.710902 CGCTCATGGACCCGTCTCA 61.711 63.158 0.00 0.00 0.00 3.27
2365 2931 2.291741 GGTCTTCTTCAGCAACAAGGTG 59.708 50.000 0.00 0.00 46.98 4.00
2373 2939 2.352229 CAACAAGGTGCGTGCGTG 60.352 61.111 0.00 0.00 0.00 5.34
2390 2956 1.530852 CGTGCGTGCACTTCTTTTTCA 60.531 47.619 21.36 0.00 44.16 2.69
2396 2962 4.411327 CGTGCACTTCTTTTTCACTTCAA 58.589 39.130 16.19 0.00 0.00 2.69
2397 2963 5.036737 CGTGCACTTCTTTTTCACTTCAAT 58.963 37.500 16.19 0.00 0.00 2.57
2398 2964 5.172053 CGTGCACTTCTTTTTCACTTCAATC 59.828 40.000 16.19 0.00 0.00 2.67
2399 2965 6.035843 GTGCACTTCTTTTTCACTTCAATCA 58.964 36.000 10.32 0.00 0.00 2.57
2412 2978 4.453819 CACTTCAATCAGGTTCAGGAAGAC 59.546 45.833 0.00 0.00 36.24 3.01
2413 2979 4.103153 ACTTCAATCAGGTTCAGGAAGACA 59.897 41.667 0.00 0.00 36.24 3.41
2415 2981 4.645535 TCAATCAGGTTCAGGAAGACAAG 58.354 43.478 0.00 0.00 0.00 3.16
2417 2983 4.982241 ATCAGGTTCAGGAAGACAAGAA 57.018 40.909 0.00 0.00 0.00 2.52
2418 2984 4.073293 TCAGGTTCAGGAAGACAAGAAC 57.927 45.455 0.00 0.00 39.59 3.01
2419 2985 3.711704 TCAGGTTCAGGAAGACAAGAACT 59.288 43.478 0.00 0.00 40.05 3.01
2420 2986 4.164221 TCAGGTTCAGGAAGACAAGAACTT 59.836 41.667 0.00 0.00 40.05 2.66
2421 2987 4.274459 CAGGTTCAGGAAGACAAGAACTTG 59.726 45.833 12.22 12.22 45.58 3.16
2438 3004 4.004196 ACTTGTTAGGACTTGGTAGCAC 57.996 45.455 0.00 0.00 0.00 4.40
2591 3159 9.774742 CCATTAGCTACAGTCTGAAAATAAAAC 57.225 33.333 6.91 0.00 0.00 2.43
2654 3226 6.664816 TGCAAATCTAGGAGGACAATTTGAAT 59.335 34.615 12.52 0.00 38.83 2.57
2694 3266 1.423541 TGTCATTGTGGCCCAAGTAGT 59.576 47.619 0.00 0.00 36.25 2.73
2711 3283 1.915141 AGTGAAAATCTGTGGCCTGG 58.085 50.000 3.32 0.00 0.00 4.45
2787 3359 9.208022 ACATCATTGTCATATATACGTTCCTTG 57.792 33.333 0.00 0.00 0.00 3.61
2855 3431 4.156190 GGCTCGTCGATCTATTAGGATTCA 59.844 45.833 0.00 0.00 0.00 2.57
2925 3501 3.058708 CCAGCACTGTTAACACTGACATG 60.059 47.826 20.55 13.55 0.00 3.21
2927 3503 4.273235 CAGCACTGTTAACACTGACATGAA 59.727 41.667 16.00 0.00 0.00 2.57
2969 3545 3.614390 GCGTCTAACTTAAGCTGTGGTCT 60.614 47.826 1.29 0.00 0.00 3.85
2981 3557 3.961408 AGCTGTGGTCTCCGTATTCTAAT 59.039 43.478 0.00 0.00 0.00 1.73
3016 3596 2.037121 GACTTTTCCCCCAAACATGGTG 59.963 50.000 0.00 0.00 0.00 4.17
3046 3626 8.164070 AGTTGATTTCTTTAATGACTACCCAGT 58.836 33.333 0.00 0.00 37.87 4.00
3047 3627 7.921786 TGATTTCTTTAATGACTACCCAGTG 57.078 36.000 0.00 0.00 34.21 3.66
3048 3628 7.685481 TGATTTCTTTAATGACTACCCAGTGA 58.315 34.615 0.00 0.00 34.21 3.41
3057 3639 5.677319 TGACTACCCAGTGATTTTCCTAG 57.323 43.478 0.00 0.00 34.21 3.02
3197 3779 2.428544 AGGTGCTGAGAGATCTACGT 57.571 50.000 0.00 0.00 0.00 3.57
3419 4001 6.749923 AGCAGATAGTGGAAAACAGAATTC 57.250 37.500 0.00 0.00 0.00 2.17
3425 4007 3.078837 GTGGAAAACAGAATTCGGCCTA 58.921 45.455 5.43 0.00 0.00 3.93
3447 4029 7.148069 GCCTAAGCCAGAAAAGTGTATGTTTAT 60.148 37.037 0.00 0.00 0.00 1.40
3571 4153 3.131577 CACATGGTTTGATCCAATGAGGG 59.868 47.826 0.00 0.00 41.09 4.30
3576 4158 2.755103 GTTTGATCCAATGAGGGTGTCC 59.245 50.000 0.00 0.00 38.24 4.02
3589 4171 2.621526 AGGGTGTCCGAATTTGACAAAC 59.378 45.455 11.86 8.87 43.82 2.93
3672 4255 6.764308 ATTTGACACACTCCATGGATAAAG 57.236 37.500 16.63 5.99 0.00 1.85
3762 4345 8.420222 GGAAGCATCATATACTGTATCTAGCAT 58.580 37.037 3.09 0.00 0.00 3.79
3763 4346 9.247126 GAAGCATCATATACTGTATCTAGCATG 57.753 37.037 3.09 2.73 0.00 4.06
4165 4839 1.190833 CCTCCTCCGGCATCTGCTAT 61.191 60.000 0.00 0.00 41.70 2.97
4622 5417 4.077184 CGGCTTGGTACTCCGCCA 62.077 66.667 16.18 0.00 39.26 5.69
4623 5418 2.349755 GGCTTGGTACTCCGCCAA 59.650 61.111 12.73 0.00 43.04 4.52
4833 5645 4.927782 GTGTGCCCGCTGTGTCCA 62.928 66.667 0.00 0.00 0.00 4.02
5007 5848 4.465446 CTGCGGAGGAGGAGGGGA 62.465 72.222 0.00 0.00 44.33 4.81
5008 5849 4.465446 TGCGGAGGAGGAGGGGAG 62.465 72.222 0.00 0.00 0.00 4.30
5010 5851 4.548513 CGGAGGAGGAGGGGAGGG 62.549 77.778 0.00 0.00 0.00 4.30
5419 6583 2.745884 CCAAACGGATGCAGGCGA 60.746 61.111 0.00 0.00 0.00 5.54
5515 6716 4.156556 TGTGAACTCCATAAGAAAGCATGC 59.843 41.667 10.51 10.51 0.00 4.06
5532 6733 2.768253 TGCCCACTGTCAGTATTCAG 57.232 50.000 4.85 0.00 37.65 3.02
5574 6775 6.595794 TCAATAGTCGTTTGTTTTCCGATTC 58.404 36.000 0.00 0.00 32.68 2.52
5752 6954 8.646004 TGACCCTAATGAATTCTTCAGATAGAG 58.354 37.037 7.05 4.45 43.98 2.43
6179 7386 2.479566 ACCTTATGCTGGTGTGTCAG 57.520 50.000 0.00 0.00 36.30 3.51
6208 7415 7.309621 CCAAATGTTTGTTCAGATTCAGGATCT 60.310 37.037 4.92 0.00 39.82 2.75
6211 7418 6.537355 TGTTTGTTCAGATTCAGGATCTCTT 58.463 36.000 0.00 0.00 43.32 2.85
6323 7531 4.402474 GCAGGAATAAACCCAGTTAGCATT 59.598 41.667 0.00 0.00 0.00 3.56
6346 7554 7.630242 TTGAGAGGCTCAAGGTAATAAAATG 57.370 36.000 18.26 0.00 44.27 2.32
6359 7569 8.066612 AGGTAATAAAATGAACATGGTCCTTG 57.933 34.615 8.62 3.21 0.00 3.61
6367 7577 4.991776 TGAACATGGTCCTTGGTGAAATA 58.008 39.130 8.62 0.00 0.00 1.40
6368 7578 5.579047 TGAACATGGTCCTTGGTGAAATAT 58.421 37.500 8.62 0.00 0.00 1.28
6369 7579 6.015918 TGAACATGGTCCTTGGTGAAATATT 58.984 36.000 8.62 0.00 0.00 1.28
6370 7580 6.496565 TGAACATGGTCCTTGGTGAAATATTT 59.503 34.615 8.62 0.00 0.00 1.40
6371 7581 6.284891 ACATGGTCCTTGGTGAAATATTTG 57.715 37.500 5.17 0.00 0.00 2.32
6372 7582 5.779771 ACATGGTCCTTGGTGAAATATTTGT 59.220 36.000 5.17 0.00 0.00 2.83
6375 7585 7.841282 TGGTCCTTGGTGAAATATTTGTTAA 57.159 32.000 5.17 0.00 0.00 2.01
6456 7666 8.533569 AATACTTAACCTGGGGAATTTACATG 57.466 34.615 0.00 0.00 0.00 3.21
6499 7709 0.102481 GCAAGCTGGATCCTGCAATG 59.898 55.000 36.19 32.35 42.23 2.82
6526 7736 5.192927 GGTCCACCTGAATCATCAATTACA 58.807 41.667 0.00 0.00 34.49 2.41
6539 7749 5.182950 TCATCAATTACAGAACGGCACATTT 59.817 36.000 0.00 0.00 0.00 2.32
6651 7861 7.160726 TCTTGTATTGATTCTGATCACACACA 58.839 34.615 0.00 0.00 41.84 3.72
6652 7862 6.726258 TGTATTGATTCTGATCACACACAC 57.274 37.500 0.00 0.00 41.84 3.82
6676 7886 6.891908 ACCTTATGAACAAAGGCAATAGACAT 59.108 34.615 1.80 0.00 46.29 3.06
6839 8049 1.277557 GAGCTTTCTCTTCCTCCAGCA 59.722 52.381 0.00 0.00 36.42 4.41
7006 8218 7.792374 TCATCCTTCATTATCAACTGCTTAC 57.208 36.000 0.00 0.00 0.00 2.34
7031 8243 6.074888 CGCTGAAGTGGTTTTAAATTTCAGTG 60.075 38.462 18.02 17.38 42.79 3.66
7034 8246 6.970043 TGAAGTGGTTTTAAATTTCAGTGTCG 59.030 34.615 0.00 0.00 0.00 4.35
7041 8253 8.908678 GGTTTTAAATTTCAGTGTCGGAAATAC 58.091 33.333 0.00 3.75 42.48 1.89
7054 8266 5.109903 GTCGGAAATACTTCAGCACATACT 58.890 41.667 0.00 0.00 32.75 2.12
7066 8278 6.968131 TCAGCACATACTGAAATTACTGAC 57.032 37.500 0.00 0.00 43.59 3.51
7111 8323 1.449726 GGCCAAAGGACCGAAACGTT 61.450 55.000 0.00 0.00 0.00 3.99
7238 8455 8.928270 AGGTAAATATTTCGTGTCTACTGAAG 57.072 34.615 3.39 0.00 0.00 3.02
7311 8529 3.738982 CCATGCATTTGAATCATGCCAT 58.261 40.909 0.00 0.00 45.59 4.40
7314 8532 3.536570 TGCATTTGAATCATGCCATTGG 58.463 40.909 6.40 0.00 45.59 3.16
7320 8538 7.490840 CATTTGAATCATGCCATTGGTACTTA 58.509 34.615 4.26 0.00 0.00 2.24
7335 8553 6.930667 TGGTACTTAAACTGTCTCCAAAAC 57.069 37.500 0.00 0.00 0.00 2.43
7370 8589 2.158623 TGCAGAGTGTGACCAAGGAAAT 60.159 45.455 0.00 0.00 0.00 2.17
7371 8590 3.072330 TGCAGAGTGTGACCAAGGAAATA 59.928 43.478 0.00 0.00 0.00 1.40
7372 8591 3.437049 GCAGAGTGTGACCAAGGAAATAC 59.563 47.826 0.00 0.00 0.00 1.89
7373 8592 4.804261 GCAGAGTGTGACCAAGGAAATACT 60.804 45.833 0.00 0.00 0.00 2.12
7374 8593 4.932200 CAGAGTGTGACCAAGGAAATACTC 59.068 45.833 11.64 11.64 34.92 2.59
7375 8594 4.020128 AGAGTGTGACCAAGGAAATACTCC 60.020 45.833 14.17 0.00 45.81 3.85
7497 8716 2.441001 CCCCATCTTCAAGCTCCTACAT 59.559 50.000 0.00 0.00 0.00 2.29
7624 8843 0.599060 GATCAGCTCCGCCTACTACC 59.401 60.000 0.00 0.00 0.00 3.18
7692 8911 1.915078 GCAGGCATGTACCCTCCACT 61.915 60.000 0.00 0.00 0.00 4.00
7693 8912 0.107508 CAGGCATGTACCCTCCACTG 60.108 60.000 0.00 0.00 0.00 3.66
7746 8977 3.520721 TGGTGATCACTGACATCCTCATT 59.479 43.478 24.50 0.00 0.00 2.57
7877 9111 0.178941 ACTGGGTGGAGTCCTACGTT 60.179 55.000 11.33 0.00 0.00 3.99
7892 9126 2.211250 ACGTTCAGCTCTACTACCCA 57.789 50.000 0.00 0.00 0.00 4.51
7952 9186 1.120530 GGTACCACGAGTCCATCCAT 58.879 55.000 7.15 0.00 0.00 3.41
8456 9699 4.382320 GGGGTGCTGCCGTACGAA 62.382 66.667 18.76 3.42 38.44 3.85
8543 9786 1.149361 ACGCACGCCATTGTATACCG 61.149 55.000 0.00 0.00 0.00 4.02
8660 9909 5.092968 TCCCAAATCCAAATTCAGACCAAT 58.907 37.500 0.00 0.00 0.00 3.16
8674 9923 2.024414 GACCAATCTAAGGCCGCATTT 58.976 47.619 0.00 0.00 0.00 2.32
8692 9941 1.558167 TTGACCTAGAATGGCCGGCA 61.558 55.000 30.85 15.30 0.00 5.69
8693 9942 1.344953 TGACCTAGAATGGCCGGCAT 61.345 55.000 30.85 17.04 0.00 4.40
8694 9943 0.886490 GACCTAGAATGGCCGGCATG 60.886 60.000 30.85 5.80 0.00 4.06
8742 9991 3.311110 TCAGCACCCCGACCAGAC 61.311 66.667 0.00 0.00 0.00 3.51
8771 10023 2.867855 TTCGTCTCCAAGCACGCCT 61.868 57.895 0.00 0.00 35.93 5.52
8789 10041 0.043334 CTTCCTCTCCCTCCCCTTCA 59.957 60.000 0.00 0.00 0.00 3.02
8867 10119 0.802222 CGTGACAGCCGTGATCGATT 60.802 55.000 0.00 0.00 39.71 3.34
8962 10214 6.302269 ACACAATCCTCTGAAGAAATGAACT 58.698 36.000 1.01 0.00 0.00 3.01
9003 10255 0.924090 GCGAGGATGAAGCGTTACTG 59.076 55.000 0.00 0.00 0.00 2.74
9063 10315 0.457851 CGATCAACGGCTCTCCTCTT 59.542 55.000 0.00 0.00 38.46 2.85
9100 10353 2.964925 TCACGCTGTTGCCGTCAC 60.965 61.111 0.00 0.00 35.36 3.67
9142 10396 3.790334 AAGCAGAGCACGTGCACGA 62.790 57.895 42.94 0.00 43.82 4.35
9155 10409 2.413142 GCACGACGCTACCTACCCT 61.413 63.158 0.00 0.00 37.77 4.34
9308 10562 6.115448 ACCTGTATCTTGCTACTTGTTCTT 57.885 37.500 0.00 0.00 0.00 2.52
9313 10567 2.143122 CTTGCTACTTGTTCTTGGCGA 58.857 47.619 0.00 0.00 0.00 5.54
9329 10583 1.234821 GCGATAATCAAATCGGGGCA 58.765 50.000 8.18 0.00 46.89 5.36
9353 10608 4.634004 AGTTCGAGTGATTTGTGTGTTTGA 59.366 37.500 0.00 0.00 0.00 2.69
9354 10609 5.296780 AGTTCGAGTGATTTGTGTGTTTGAT 59.703 36.000 0.00 0.00 0.00 2.57
9355 10610 5.342806 TCGAGTGATTTGTGTGTTTGATC 57.657 39.130 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.940166 CGTTGGTTTATTATTAAATACCACCTC 57.060 33.333 0.00 0.00 34.69 3.85
10 11 9.683870 TCGTTGGTTTATTATTAAATACCACCT 57.316 29.630 0.00 0.00 34.69 4.00
21 22 7.062488 GCGGTCATTTTTCGTTGGTTTATTATT 59.938 33.333 0.00 0.00 0.00 1.40
22 23 6.528774 GCGGTCATTTTTCGTTGGTTTATTAT 59.471 34.615 0.00 0.00 0.00 1.28
23 24 5.857517 GCGGTCATTTTTCGTTGGTTTATTA 59.142 36.000 0.00 0.00 0.00 0.98
24 25 4.682401 GCGGTCATTTTTCGTTGGTTTATT 59.318 37.500 0.00 0.00 0.00 1.40
25 26 4.231439 GCGGTCATTTTTCGTTGGTTTAT 58.769 39.130 0.00 0.00 0.00 1.40
26 27 3.066342 TGCGGTCATTTTTCGTTGGTTTA 59.934 39.130 0.00 0.00 0.00 2.01
27 28 2.159226 TGCGGTCATTTTTCGTTGGTTT 60.159 40.909 0.00 0.00 0.00 3.27
28 29 1.405821 TGCGGTCATTTTTCGTTGGTT 59.594 42.857 0.00 0.00 0.00 3.67
29 30 1.025812 TGCGGTCATTTTTCGTTGGT 58.974 45.000 0.00 0.00 0.00 3.67
30 31 2.126914 TTGCGGTCATTTTTCGTTGG 57.873 45.000 0.00 0.00 0.00 3.77
31 32 4.259371 GCATATTGCGGTCATTTTTCGTTG 60.259 41.667 0.00 0.00 31.71 4.10
32 33 3.857093 GCATATTGCGGTCATTTTTCGTT 59.143 39.130 0.00 0.00 31.71 3.85
33 34 3.434637 GCATATTGCGGTCATTTTTCGT 58.565 40.909 0.00 0.00 31.71 3.85
46 47 1.531058 GGAACGTCAACCGCATATTGC 60.531 52.381 0.00 0.00 41.42 3.56
47 48 1.063469 GGGAACGTCAACCGCATATTG 59.937 52.381 0.00 0.00 41.42 1.90
48 49 1.339247 TGGGAACGTCAACCGCATATT 60.339 47.619 0.00 0.00 41.42 1.28
49 50 0.250793 TGGGAACGTCAACCGCATAT 59.749 50.000 0.00 0.00 41.42 1.78
50 51 0.250793 ATGGGAACGTCAACCGCATA 59.749 50.000 0.00 0.00 41.42 3.14
51 52 1.002624 ATGGGAACGTCAACCGCAT 60.003 52.632 0.00 0.00 41.42 4.73
52 53 1.963855 CATGGGAACGTCAACCGCA 60.964 57.895 0.00 0.00 41.42 5.69
53 54 2.686816 CCATGGGAACGTCAACCGC 61.687 63.158 2.85 0.00 41.42 5.68
54 55 1.004320 TCCATGGGAACGTCAACCG 60.004 57.895 13.02 0.00 44.03 4.44
55 56 0.676782 CCTCCATGGGAACGTCAACC 60.677 60.000 13.02 0.00 0.00 3.77
56 57 2.854522 CCTCCATGGGAACGTCAAC 58.145 57.895 13.02 0.00 0.00 3.18
76 77 3.415955 GAATCGTTCGTTCCGGCGC 62.416 63.158 0.00 0.00 0.00 6.53
77 78 2.693285 GAATCGTTCGTTCCGGCG 59.307 61.111 0.00 0.00 0.00 6.46
88 89 0.826062 ATCCGGGGTAAACGAATCGT 59.174 50.000 0.96 0.96 43.97 3.73
89 90 1.214367 CATCCGGGGTAAACGAATCG 58.786 55.000 0.00 0.00 0.00 3.34
90 91 1.134310 ACCATCCGGGGTAAACGAATC 60.134 52.381 0.00 0.00 40.07 2.52
91 92 0.913924 ACCATCCGGGGTAAACGAAT 59.086 50.000 0.00 0.00 40.07 3.34
92 93 0.691904 AACCATCCGGGGTAAACGAA 59.308 50.000 0.00 0.00 41.32 3.85
93 94 0.249955 GAACCATCCGGGGTAAACGA 59.750 55.000 0.00 0.00 41.32 3.85
94 95 0.036199 TGAACCATCCGGGGTAAACG 60.036 55.000 0.00 0.00 41.32 3.60
95 96 2.203470 TTGAACCATCCGGGGTAAAC 57.797 50.000 0.00 0.00 41.32 2.01
96 97 2.681390 CGATTGAACCATCCGGGGTAAA 60.681 50.000 0.00 0.96 41.32 2.01
97 98 1.134340 CGATTGAACCATCCGGGGTAA 60.134 52.381 0.00 0.00 41.32 2.85
98 99 0.466543 CGATTGAACCATCCGGGGTA 59.533 55.000 0.00 0.00 41.32 3.69
99 100 1.223487 CGATTGAACCATCCGGGGT 59.777 57.895 0.00 0.00 45.04 4.95
100 101 0.532862 CTCGATTGAACCATCCGGGG 60.533 60.000 0.00 0.00 42.91 5.73
101 102 1.160329 GCTCGATTGAACCATCCGGG 61.160 60.000 0.00 0.00 44.81 5.73
102 103 1.490693 CGCTCGATTGAACCATCCGG 61.491 60.000 0.00 0.00 38.77 5.14
103 104 0.527600 TCGCTCGATTGAACCATCCG 60.528 55.000 0.00 0.00 0.00 4.18
104 105 1.327764 GTTCGCTCGATTGAACCATCC 59.672 52.381 15.41 0.00 38.79 3.51
105 106 2.721129 GTTCGCTCGATTGAACCATC 57.279 50.000 15.41 0.00 38.79 3.51
109 110 1.005975 CGATGGTTCGCTCGATTGAAC 60.006 52.381 17.17 17.17 42.87 3.18
110 111 1.277326 CGATGGTTCGCTCGATTGAA 58.723 50.000 0.00 0.00 38.75 2.69
111 112 2.957871 CGATGGTTCGCTCGATTGA 58.042 52.632 0.00 0.00 38.75 2.57
124 125 1.002134 AAGCCAGGAACCACGATGG 60.002 57.895 0.00 0.00 45.02 3.51
125 126 0.321564 TGAAGCCAGGAACCACGATG 60.322 55.000 0.00 0.00 0.00 3.84
126 127 0.036010 CTGAAGCCAGGAACCACGAT 60.036 55.000 0.00 0.00 36.77 3.73
127 128 1.371183 CTGAAGCCAGGAACCACGA 59.629 57.895 0.00 0.00 36.77 4.35
128 129 2.328099 GCTGAAGCCAGGAACCACG 61.328 63.158 0.00 0.00 40.72 4.94
129 130 2.328099 CGCTGAAGCCAGGAACCAC 61.328 63.158 0.00 0.00 40.72 4.16
130 131 2.032528 CGCTGAAGCCAGGAACCA 59.967 61.111 0.00 0.00 40.72 3.67
131 132 2.747855 CCGCTGAAGCCAGGAACC 60.748 66.667 0.00 0.00 40.72 3.62
132 133 2.747855 CCCGCTGAAGCCAGGAAC 60.748 66.667 0.00 0.00 40.72 3.62
133 134 3.249189 ACCCGCTGAAGCCAGGAA 61.249 61.111 11.86 0.00 40.72 3.36
134 135 3.706373 GACCCGCTGAAGCCAGGA 61.706 66.667 11.86 0.00 40.72 3.86
136 137 3.883744 AACGACCCGCTGAAGCCAG 62.884 63.158 0.00 0.00 43.22 4.85
137 138 3.876589 GAACGACCCGCTGAAGCCA 62.877 63.158 0.00 0.00 37.91 4.75
138 139 3.119096 GAACGACCCGCTGAAGCC 61.119 66.667 0.00 0.00 37.91 4.35
139 140 1.298859 ATTGAACGACCCGCTGAAGC 61.299 55.000 0.00 0.00 37.78 3.86
140 141 1.156736 AATTGAACGACCCGCTGAAG 58.843 50.000 0.00 0.00 0.00 3.02
141 142 2.459060 TAATTGAACGACCCGCTGAA 57.541 45.000 0.00 0.00 0.00 3.02
142 143 2.070783 GTTAATTGAACGACCCGCTGA 58.929 47.619 0.00 0.00 0.00 4.26
143 144 2.073816 AGTTAATTGAACGACCCGCTG 58.926 47.619 0.00 0.00 43.37 5.18
144 145 2.289195 TGAGTTAATTGAACGACCCGCT 60.289 45.455 0.00 0.00 43.37 5.52
145 146 2.070783 TGAGTTAATTGAACGACCCGC 58.929 47.619 0.00 0.00 43.37 6.13
146 147 3.323243 AGTGAGTTAATTGAACGACCCG 58.677 45.455 0.00 0.00 43.37 5.28
147 148 5.684550 AAAGTGAGTTAATTGAACGACCC 57.315 39.130 0.00 0.00 43.37 4.46
148 149 9.326339 GATAAAAAGTGAGTTAATTGAACGACC 57.674 33.333 0.00 0.00 43.37 4.79
149 150 9.872757 TGATAAAAAGTGAGTTAATTGAACGAC 57.127 29.630 0.00 0.00 43.37 4.34
155 156 8.863049 GCACCATGATAAAAAGTGAGTTAATTG 58.137 33.333 0.00 0.00 0.00 2.32
156 157 7.754924 CGCACCATGATAAAAAGTGAGTTAATT 59.245 33.333 0.00 0.00 0.00 1.40
157 158 7.250569 CGCACCATGATAAAAAGTGAGTTAAT 58.749 34.615 0.00 0.00 0.00 1.40
158 159 6.607689 CGCACCATGATAAAAAGTGAGTTAA 58.392 36.000 0.00 0.00 0.00 2.01
159 160 5.391523 GCGCACCATGATAAAAAGTGAGTTA 60.392 40.000 0.30 0.00 31.85 2.24
160 161 4.615912 GCGCACCATGATAAAAAGTGAGTT 60.616 41.667 0.30 0.00 31.85 3.01
161 162 3.119849 GCGCACCATGATAAAAAGTGAGT 60.120 43.478 0.30 0.00 31.85 3.41
162 163 3.429085 GCGCACCATGATAAAAAGTGAG 58.571 45.455 0.30 0.00 0.00 3.51
163 164 2.159585 CGCGCACCATGATAAAAAGTGA 60.160 45.455 8.75 0.00 0.00 3.41
164 165 2.176369 CGCGCACCATGATAAAAAGTG 58.824 47.619 8.75 0.00 0.00 3.16
165 166 1.810151 ACGCGCACCATGATAAAAAGT 59.190 42.857 5.73 0.00 0.00 2.66
166 167 2.176369 CACGCGCACCATGATAAAAAG 58.824 47.619 5.73 0.00 0.00 2.27
167 168 1.135546 CCACGCGCACCATGATAAAAA 60.136 47.619 5.73 0.00 0.00 1.94
168 169 0.449786 CCACGCGCACCATGATAAAA 59.550 50.000 5.73 0.00 0.00 1.52
169 170 1.372838 CCCACGCGCACCATGATAAA 61.373 55.000 5.73 0.00 0.00 1.40
170 171 1.817520 CCCACGCGCACCATGATAA 60.818 57.895 5.73 0.00 0.00 1.75
171 172 2.203001 CCCACGCGCACCATGATA 60.203 61.111 5.73 0.00 0.00 2.15
172 173 4.094646 TCCCACGCGCACCATGAT 62.095 61.111 5.73 0.00 0.00 2.45
173 174 4.758251 CTCCCACGCGCACCATGA 62.758 66.667 5.73 0.00 0.00 3.07
174 175 4.758251 TCTCCCACGCGCACCATG 62.758 66.667 5.73 0.00 0.00 3.66
175 176 3.545124 TTTCTCCCACGCGCACCAT 62.545 57.895 5.73 0.00 0.00 3.55
380 384 6.763715 TGAATCTATAGGTACCTTTGCCAT 57.236 37.500 22.11 9.64 0.00 4.40
383 387 8.854614 ATGAATGAATCTATAGGTACCTTTGC 57.145 34.615 22.11 3.87 0.00 3.68
490 726 2.099263 AGTACAGATATCGCACGTGCTT 59.901 45.455 35.27 24.97 39.32 3.91
517 754 3.681897 GGACTTGTGCTGATGTCTAGTTG 59.318 47.826 0.00 0.00 0.00 3.16
623 1121 1.330521 GCTTTTTCTGCTCGTGTGACA 59.669 47.619 0.00 0.00 0.00 3.58
624 1122 1.330521 TGCTTTTTCTGCTCGTGTGAC 59.669 47.619 0.00 0.00 0.00 3.67
687 1186 1.474498 GGTCGAGAGAGGAGAGGAGAC 60.474 61.905 0.00 0.00 43.49 3.36
781 1291 6.091169 TGTGTCCCGTTCGAGTTTTATATTTC 59.909 38.462 0.00 0.00 0.00 2.17
805 1315 1.000283 AGAAGAGTCGTGTGAGCCTTG 60.000 52.381 0.00 0.00 0.00 3.61
845 1355 2.030213 CAGTAGAGTAGTGCCGTACGAC 59.970 54.545 18.76 5.50 35.41 4.34
914 1432 0.032416 TACTGTAGGTGGGAGGAGCC 60.032 60.000 0.00 0.00 0.00 4.70
951 1469 0.179084 GCGGACCGGATCTTTGATGA 60.179 55.000 17.22 0.00 0.00 2.92
1099 1617 4.157958 CTCTTCTTGCCGCAGCGC 62.158 66.667 10.07 0.00 44.31 5.92
1360 1884 1.764723 TGGATCGATCTTGGTGCTGAT 59.235 47.619 23.96 0.00 0.00 2.90
1439 1968 4.473477 AGCACTAGTACCAGGAATGAAC 57.527 45.455 0.00 0.00 0.00 3.18
1440 1969 4.099573 GCTAGCACTAGTACCAGGAATGAA 59.900 45.833 10.63 0.00 35.65 2.57
1441 1970 3.637229 GCTAGCACTAGTACCAGGAATGA 59.363 47.826 10.63 0.00 35.65 2.57
1442 1971 3.639094 AGCTAGCACTAGTACCAGGAATG 59.361 47.826 18.83 0.00 35.65 2.67
1443 1972 3.892588 GAGCTAGCACTAGTACCAGGAAT 59.107 47.826 18.83 0.00 35.65 3.01
1470 1999 0.704664 GGGATTGGGGGAGTCAACTT 59.295 55.000 0.00 0.00 0.00 2.66
1479 2008 1.227383 CTCGAAAGGGGATTGGGGG 59.773 63.158 0.00 0.00 0.00 5.40
1504 2033 6.255215 TCGAAACGAATATTTTGCCAAGATC 58.745 36.000 0.00 0.00 31.06 2.75
1537 2066 3.664107 CATCCCAGAAAGAACTCGAACA 58.336 45.455 0.00 0.00 0.00 3.18
1669 2219 4.391523 CACATGACCGTATCACAATTCACA 59.608 41.667 0.00 0.00 41.24 3.58
1670 2220 4.629634 TCACATGACCGTATCACAATTCAC 59.370 41.667 0.00 0.00 41.24 3.18
1671 2221 4.826556 TCACATGACCGTATCACAATTCA 58.173 39.130 0.00 0.00 41.24 2.57
1672 2222 4.870426 ACTCACATGACCGTATCACAATTC 59.130 41.667 0.00 0.00 41.24 2.17
1673 2223 4.631377 CACTCACATGACCGTATCACAATT 59.369 41.667 0.00 0.00 41.24 2.32
1674 2224 4.183865 CACTCACATGACCGTATCACAAT 58.816 43.478 0.00 0.00 41.24 2.71
1675 2225 3.006430 ACACTCACATGACCGTATCACAA 59.994 43.478 0.00 0.00 41.24 3.33
1708 2268 7.202232 GGAAAATGTAGAGGGAATATCCTTCCT 60.202 40.741 5.03 0.00 43.04 3.36
1709 2269 6.943146 GGAAAATGTAGAGGGAATATCCTTCC 59.057 42.308 5.03 0.00 43.04 3.46
1710 2270 7.518188 TGGAAAATGTAGAGGGAATATCCTTC 58.482 38.462 0.52 0.52 42.42 3.46
1711 2271 7.465900 TGGAAAATGTAGAGGGAATATCCTT 57.534 36.000 0.00 0.00 37.25 3.36
1741 2301 8.105197 TCATTTATCATATCATGGGGAGTGAAG 58.895 37.037 0.00 0.00 30.73 3.02
1744 2304 6.600822 GGTCATTTATCATATCATGGGGAGTG 59.399 42.308 0.00 0.00 0.00 3.51
1765 2325 1.227823 CGGCAGTGGTTCTTGGTCA 60.228 57.895 0.00 0.00 0.00 4.02
1767 2327 0.110486 ATTCGGCAGTGGTTCTTGGT 59.890 50.000 0.00 0.00 0.00 3.67
1789 2349 3.311596 TGATTCTGATCATCAGCTTTGCG 59.688 43.478 10.10 0.00 43.95 4.85
1824 2386 1.084370 GCGATTCTTCCCGGTCACAG 61.084 60.000 0.00 0.00 0.00 3.66
1927 2490 6.813152 CCACATGTTGATGGGAAAAGAATAAC 59.187 38.462 0.00 0.00 34.53 1.89
1933 2496 2.354003 GGCCACATGTTGATGGGAAAAG 60.354 50.000 0.00 0.00 34.53 2.27
1936 2499 0.964860 CGGCCACATGTTGATGGGAA 60.965 55.000 2.24 0.00 34.53 3.97
1995 2558 1.362355 CTTGTTGGGAAACGTGGGC 59.638 57.895 0.00 0.00 0.00 5.36
1996 2559 1.107945 AACTTGTTGGGAAACGTGGG 58.892 50.000 0.00 0.00 0.00 4.61
2011 2574 2.719354 GACGTGGCGGCAAAACTT 59.281 55.556 15.50 0.00 33.63 2.66
2026 2589 4.595538 TCACGTGTGGCGGTGGAC 62.596 66.667 16.51 0.00 46.52 4.02
2027 2590 4.595538 GTCACGTGTGGCGGTGGA 62.596 66.667 16.51 0.00 46.52 4.02
2033 2596 2.738521 ATGAGCGTCACGTGTGGC 60.739 61.111 16.51 18.97 0.00 5.01
2281 2847 2.030185 GGAGTTGCAGTCGAAGTAGACA 60.030 50.000 0.00 0.00 43.24 3.41
2337 2903 1.202806 TGCTGAAGAAGACCCTGTTGG 60.203 52.381 0.00 0.00 41.37 3.77
2373 2939 2.475200 AGTGAAAAAGAAGTGCACGC 57.525 45.000 12.01 7.96 34.82 5.34
2390 2956 4.103153 TGTCTTCCTGAACCTGATTGAAGT 59.897 41.667 0.00 0.00 32.93 3.01
2396 2962 4.349342 AGTTCTTGTCTTCCTGAACCTGAT 59.651 41.667 0.00 0.00 39.45 2.90
2397 2963 3.711704 AGTTCTTGTCTTCCTGAACCTGA 59.288 43.478 0.00 0.00 39.45 3.86
2398 2964 4.078639 AGTTCTTGTCTTCCTGAACCTG 57.921 45.455 0.00 0.00 39.45 4.00
2399 2965 4.080299 ACAAGTTCTTGTCTTCCTGAACCT 60.080 41.667 11.75 0.00 39.45 3.50
2412 2978 5.179555 GCTACCAAGTCCTAACAAGTTCTTG 59.820 44.000 10.50 10.50 34.14 3.02
2413 2979 5.163237 TGCTACCAAGTCCTAACAAGTTCTT 60.163 40.000 0.00 0.00 0.00 2.52
2415 2981 4.451435 GTGCTACCAAGTCCTAACAAGTTC 59.549 45.833 0.00 0.00 0.00 3.01
2417 2983 3.646637 AGTGCTACCAAGTCCTAACAAGT 59.353 43.478 0.00 0.00 0.00 3.16
2418 2984 3.997021 CAGTGCTACCAAGTCCTAACAAG 59.003 47.826 0.00 0.00 0.00 3.16
2419 2985 3.244422 CCAGTGCTACCAAGTCCTAACAA 60.244 47.826 0.00 0.00 0.00 2.83
2420 2986 2.301870 CCAGTGCTACCAAGTCCTAACA 59.698 50.000 0.00 0.00 0.00 2.41
2421 2987 2.354805 CCCAGTGCTACCAAGTCCTAAC 60.355 54.545 0.00 0.00 0.00 2.34
2422 2988 1.906574 CCCAGTGCTACCAAGTCCTAA 59.093 52.381 0.00 0.00 0.00 2.69
2423 2989 1.203262 ACCCAGTGCTACCAAGTCCTA 60.203 52.381 0.00 0.00 0.00 2.94
2424 2990 0.473886 ACCCAGTGCTACCAAGTCCT 60.474 55.000 0.00 0.00 0.00 3.85
2438 3004 1.683011 CCAGTCAAGGCCATAACCCAG 60.683 57.143 5.01 0.00 0.00 4.45
2606 3174 8.161425 TGCAGTTAATTACCTCCTTTACTTTCT 58.839 33.333 0.00 0.00 0.00 2.52
2607 3175 8.331730 TGCAGTTAATTACCTCCTTTACTTTC 57.668 34.615 0.00 0.00 0.00 2.62
2654 3226 5.416326 TGACATGTCTCAATCAAATCATGCA 59.584 36.000 25.55 0.00 36.96 3.96
2694 3266 1.881925 CGTCCAGGCCACAGATTTTCA 60.882 52.381 5.01 0.00 0.00 2.69
2795 3367 5.238432 CAGTGCTGGAAAACATACACACTTA 59.762 40.000 0.00 0.00 38.08 2.24
2798 3370 3.315191 ACAGTGCTGGAAAACATACACAC 59.685 43.478 4.11 0.00 38.08 3.82
2855 3431 7.505585 TCAATGGTTCTTGACTATTTCTTTGGT 59.494 33.333 0.00 0.00 37.34 3.67
2925 3501 8.762149 ACGCGTTTATATATGAATTTGTGTTC 57.238 30.769 5.58 0.00 0.00 3.18
2927 3503 8.138365 AGACGCGTTTATATATGAATTTGTGT 57.862 30.769 15.53 1.50 0.00 3.72
2947 3523 2.666994 GACCACAGCTTAAGTTAGACGC 59.333 50.000 4.02 0.00 0.00 5.19
2981 3557 7.120716 GGGGGAAAAGTCAACTATAAACCATA 58.879 38.462 0.00 0.00 0.00 2.74
3038 3618 5.422214 ACACTAGGAAAATCACTGGGTAG 57.578 43.478 0.00 0.00 0.00 3.18
3042 3622 5.765182 AGTCAAACACTAGGAAAATCACTGG 59.235 40.000 0.00 0.00 31.37 4.00
3043 3623 6.483307 TGAGTCAAACACTAGGAAAATCACTG 59.517 38.462 0.00 0.00 34.41 3.66
3044 3624 6.591935 TGAGTCAAACACTAGGAAAATCACT 58.408 36.000 0.00 0.00 34.41 3.41
3046 3626 8.463930 AATTGAGTCAAACACTAGGAAAATCA 57.536 30.769 10.14 0.00 34.41 2.57
3057 3639 3.816523 TCCCGGTAAATTGAGTCAAACAC 59.183 43.478 10.14 7.84 0.00 3.32
3119 3701 2.801699 CGGTAAATACGGCTGCATGAGA 60.802 50.000 0.50 0.00 0.00 3.27
3197 3779 0.979187 GAACCCCGGTACCATCTCCA 60.979 60.000 13.54 0.00 0.00 3.86
3425 4007 7.951591 ACAATAAACATACACTTTTCTGGCTT 58.048 30.769 0.00 0.00 0.00 4.35
3447 4029 5.661312 AGCACTGGTAGATATAGTTGGACAA 59.339 40.000 0.00 0.00 0.00 3.18
3571 4153 6.396459 TTTTTGTTTGTCAAATTCGGACAC 57.604 33.333 11.26 4.02 44.38 3.67
3576 4158 5.902981 CCATGCTTTTTGTTTGTCAAATTCG 59.097 36.000 0.40 0.00 44.15 3.34
3589 4171 4.744631 GTCTTGTGTAACCCATGCTTTTTG 59.255 41.667 0.00 0.00 34.36 2.44
3652 4235 3.008923 TGCTTTATCCATGGAGTGTGTCA 59.991 43.478 21.33 10.48 0.00 3.58
3656 4239 2.308570 TGGTGCTTTATCCATGGAGTGT 59.691 45.455 21.33 6.04 0.00 3.55
3672 4255 6.867816 TGTTTCAATTTGATAACTCATGGTGC 59.132 34.615 17.43 0.00 0.00 5.01
3894 4482 2.837291 GCATAAATGGGCCGGCCA 60.837 61.111 44.46 30.82 37.98 5.36
3973 4593 8.795842 TTTCTAGTTGTTTAAGTGGACTTTGA 57.204 30.769 0.00 0.00 37.40 2.69
4195 4877 1.048160 GGCTTGAGGAGGAGGAGGAG 61.048 65.000 0.00 0.00 0.00 3.69
4196 4878 1.002274 GGCTTGAGGAGGAGGAGGA 59.998 63.158 0.00 0.00 0.00 3.71
4197 4879 2.430610 CGGCTTGAGGAGGAGGAGG 61.431 68.421 0.00 0.00 0.00 4.30
4283 5010 2.348998 CCTTGAGCGCTGGAAGGT 59.651 61.111 26.62 0.00 32.94 3.50
4438 5190 3.702048 CCCCTCGTCGAGCCCAAA 61.702 66.667 17.02 0.00 0.00 3.28
4469 5238 2.186903 CCTATTCGTGCCGCCACT 59.813 61.111 0.00 0.00 39.86 4.00
4622 5417 2.352032 CGGAGGAAGAGGAGGCGTT 61.352 63.158 0.00 0.00 0.00 4.84
4623 5418 2.756283 CGGAGGAAGAGGAGGCGT 60.756 66.667 0.00 0.00 0.00 5.68
4991 5826 4.465446 CTCCCCTCCTCCTCCGCA 62.465 72.222 0.00 0.00 0.00 5.69
5009 5850 3.866582 CATCCTCCCGTGCTCCCC 61.867 72.222 0.00 0.00 0.00 4.81
5010 5851 2.764128 TCATCCTCCCGTGCTCCC 60.764 66.667 0.00 0.00 0.00 4.30
5351 6503 1.677637 GCCGACCCAAACCCAAAACA 61.678 55.000 0.00 0.00 0.00 2.83
5419 6583 0.960364 ATGCAGCGACCCAAATCGTT 60.960 50.000 0.00 0.00 44.13 3.85
5515 6716 5.407407 AAGTACTGAATACTGACAGTGGG 57.593 43.478 18.58 6.06 43.79 4.61
5532 6733 6.870439 ACTATTGAACCTTTCGTGGTAAGTAC 59.130 38.462 0.00 0.00 39.83 2.73
5574 6775 9.837525 CTAAAGACTCAATTTCATGAAAAGGAG 57.162 33.333 30.96 30.96 38.93 3.69
5752 6954 2.754552 TCTGTATGAGGTGCCAAATTGC 59.245 45.455 0.00 0.00 0.00 3.56
6179 7386 5.049167 TGAATCTGAACAAACATTTGGTGC 58.951 37.500 9.09 0.00 38.41 5.01
6294 7502 5.193099 ACTGGGTTTATTCCTGCAATAGT 57.807 39.130 0.00 0.00 0.00 2.12
6323 7531 6.957631 TCATTTTATTACCTTGAGCCTCTCA 58.042 36.000 0.00 0.00 38.87 3.27
6334 7542 7.124147 CCAAGGACCATGTTCATTTTATTACCT 59.876 37.037 0.00 0.00 0.00 3.08
6341 7549 4.222336 TCACCAAGGACCATGTTCATTTT 58.778 39.130 0.00 0.00 0.00 1.82
6344 7552 3.524095 TTCACCAAGGACCATGTTCAT 57.476 42.857 0.00 0.00 0.00 2.57
6345 7553 3.304911 TTTCACCAAGGACCATGTTCA 57.695 42.857 0.00 0.00 0.00 3.18
6346 7554 6.530019 AATATTTCACCAAGGACCATGTTC 57.470 37.500 0.00 0.00 0.00 3.18
6380 7590 8.834749 ACTTTTACTGATCAACCTAGAAGTTC 57.165 34.615 0.00 0.00 0.00 3.01
6441 7651 6.136155 ACCTATTTCCATGTAAATTCCCCAG 58.864 40.000 1.24 0.00 31.63 4.45
6456 7666 3.509967 CACTGGTGGGAAAACCTATTTCC 59.490 47.826 10.75 10.75 45.47 3.13
6499 7709 2.167693 TGATGATTCAGGTGGACCGTAC 59.832 50.000 0.00 0.00 42.08 3.67
6526 7736 1.202758 TGACCAGAAATGTGCCGTTCT 60.203 47.619 0.00 0.00 34.37 3.01
6539 7749 0.827925 AGTCCGTTGAGCTGACCAGA 60.828 55.000 0.00 0.00 32.62 3.86
6580 7790 7.485913 TGAACATAAATTAAGACTCGGTCGTAC 59.514 37.037 0.66 0.00 37.67 3.67
6633 7843 4.356405 AGGTGTGTGTGATCAGAATCAA 57.644 40.909 0.00 0.00 43.42 2.57
6651 7861 6.245408 TGTCTATTGCCTTTGTTCATAAGGT 58.755 36.000 0.00 0.00 43.34 3.50
6652 7862 6.757897 TGTCTATTGCCTTTGTTCATAAGG 57.242 37.500 0.00 0.00 44.09 2.69
6676 7886 4.081420 GGTCTACAATGAAGAGCTTCTCCA 60.081 45.833 11.16 0.00 40.14 3.86
6773 7983 4.502962 CACCTTGAGTCAGGAAGAAGATC 58.497 47.826 13.56 0.00 37.39 2.75
6839 8049 1.611851 CTGAGGCTCCCCTGACTGT 60.612 63.158 12.86 0.00 43.12 3.55
6860 8070 0.253327 CAGGGGTAAGGACCTTGCTC 59.747 60.000 20.14 17.05 46.09 4.26
7002 8214 7.646130 TGAAATTTAAAACCACTTCAGCGTAAG 59.354 33.333 0.00 0.15 43.44 2.34
7006 8218 5.977129 ACTGAAATTTAAAACCACTTCAGCG 59.023 36.000 17.89 0.00 42.15 5.18
7031 8243 5.005779 CAGTATGTGCTGAAGTATTTCCGAC 59.994 44.000 0.00 0.00 38.70 4.79
7034 8246 6.985188 TTCAGTATGTGCTGAAGTATTTCC 57.015 37.500 9.09 0.00 46.74 3.13
7066 8278 2.159310 TGCAAACCGAAACCACTGAAAG 60.159 45.455 0.00 0.00 42.29 2.62
7075 8287 0.781787 GCCGAAATGCAAACCGAAAC 59.218 50.000 0.00 0.00 0.00 2.78
7183 8399 9.313118 GGTCAAAATGTTTCAGTCATTTAAGTT 57.687 29.630 4.68 0.00 42.31 2.66
7184 8400 7.647715 CGGTCAAAATGTTTCAGTCATTTAAGT 59.352 33.333 4.68 0.00 42.31 2.24
7185 8401 7.860373 TCGGTCAAAATGTTTCAGTCATTTAAG 59.140 33.333 4.68 2.40 42.31 1.85
7186 8402 7.708051 TCGGTCAAAATGTTTCAGTCATTTAA 58.292 30.769 4.68 0.00 42.31 1.52
7187 8403 7.265647 TCGGTCAAAATGTTTCAGTCATTTA 57.734 32.000 4.68 0.00 42.31 1.40
7200 8416 8.794406 CGAAATATTTACCTTTCGGTCAAAATG 58.206 33.333 0.00 0.00 46.04 2.32
7311 8529 6.319405 GGTTTTGGAGACAGTTTAAGTACCAA 59.681 38.462 0.00 0.00 44.54 3.67
7314 8532 6.956047 CAGGTTTTGGAGACAGTTTAAGTAC 58.044 40.000 0.00 0.00 44.54 2.73
7370 8589 6.827251 CAGAGTGTACATGGTAAGTAGGAGTA 59.173 42.308 0.00 0.00 0.00 2.59
7371 8590 5.652891 CAGAGTGTACATGGTAAGTAGGAGT 59.347 44.000 0.00 0.00 0.00 3.85
7372 8591 5.886474 TCAGAGTGTACATGGTAAGTAGGAG 59.114 44.000 0.00 0.00 0.00 3.69
7373 8592 5.651139 GTCAGAGTGTACATGGTAAGTAGGA 59.349 44.000 0.00 0.00 0.00 2.94
7374 8593 5.417894 TGTCAGAGTGTACATGGTAAGTAGG 59.582 44.000 0.00 0.00 0.00 3.18
7375 8594 6.510879 TGTCAGAGTGTACATGGTAAGTAG 57.489 41.667 0.00 0.00 0.00 2.57
7461 8680 3.204827 GGGTGCATCGCGCTCATT 61.205 61.111 5.56 0.00 39.61 2.57
7563 8782 1.203523 GTGAAGCAGGACTCGATCACT 59.796 52.381 4.66 0.00 35.49 3.41
7659 8878 4.154347 CTGCGGAGGAGGTCAGCC 62.154 72.222 0.00 0.00 45.11 4.85
7692 8911 4.136051 TCATTCTCAGTTGCAATGTCACA 58.864 39.130 0.59 0.00 0.00 3.58
7693 8912 4.754372 TCATTCTCAGTTGCAATGTCAC 57.246 40.909 0.59 0.00 0.00 3.67
7746 8977 2.592993 CGGCCACTCCCCTGAGAAA 61.593 63.158 2.24 0.00 41.42 2.52
7877 9111 2.017623 GCGTCTGGGTAGTAGAGCTGA 61.018 57.143 0.00 0.00 0.00 4.26
8543 9786 2.161609 ACAAAATCCAGAACGAATCGCC 59.838 45.455 1.15 0.00 0.00 5.54
8660 9909 0.618458 AGGTCAAATGCGGCCTTAGA 59.382 50.000 0.00 0.00 0.00 2.10
8674 9923 1.344953 ATGCCGGCCATTCTAGGTCA 61.345 55.000 26.77 0.00 30.91 4.02
8742 9991 1.592223 GAGACGAACAGGAGGTGGG 59.408 63.158 0.00 0.00 0.00 4.61
8771 10023 0.252742 GTGAAGGGGAGGGAGAGGAA 60.253 60.000 0.00 0.00 0.00 3.36
8789 10041 2.842462 TGCTGGGTCTGGTGTCGT 60.842 61.111 0.00 0.00 0.00 4.34
8962 10214 5.560760 CGCTGTTCATTTCTTCAGTTAAGCA 60.561 40.000 0.00 0.00 34.97 3.91
9003 10255 1.076705 GCCCTCCATTTCCCAGGTC 60.077 63.158 0.00 0.00 0.00 3.85
9063 10315 0.032952 CGAGGAACAGGAACCGTTGA 59.967 55.000 0.00 0.00 0.00 3.18
9100 10353 0.970937 TCCTGTAGAGGTTCAGCGGG 60.971 60.000 5.71 0.00 40.76 6.13
9142 10396 2.038329 TGGCAGGGTAGGTAGCGT 59.962 61.111 0.00 0.00 0.00 5.07
9155 10409 2.320781 GGAGGAGATAAGTAGCTGGCA 58.679 52.381 0.00 0.00 0.00 4.92
9308 10562 1.890876 CCCCGATTTGATTATCGCCA 58.109 50.000 0.00 0.00 44.55 5.69
9313 10567 3.315191 CGAACTTGCCCCGATTTGATTAT 59.685 43.478 0.00 0.00 0.00 1.28
9329 10583 5.123186 TCAAACACACAAATCACTCGAACTT 59.877 36.000 0.00 0.00 0.00 2.66
9353 10608 1.240256 GACAGGACTAGCGATCGGAT 58.760 55.000 18.30 0.00 0.00 4.18
9354 10609 0.107361 TGACAGGACTAGCGATCGGA 60.107 55.000 18.30 0.00 0.00 4.55
9355 10610 0.738975 TTGACAGGACTAGCGATCGG 59.261 55.000 18.30 2.45 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.