Multiple sequence alignment - TraesCS4D01G292900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G292900 chr4D 100.000 8957 0 0 1 8957 463910800 463919756 0.000000e+00 16541
1 TraesCS4D01G292900 chr4D 95.506 890 38 2 1 888 126638482 126639371 0.000000e+00 1421
2 TraesCS4D01G292900 chr4A 94.860 3988 135 23 3116 7051 5988519 5984550 0.000000e+00 6165
3 TraesCS4D01G292900 chr4A 92.398 1197 55 13 1015 2185 5992082 5990896 0.000000e+00 1674
4 TraesCS4D01G292900 chr4A 94.737 893 44 2 1 890 438390782 438391674 0.000000e+00 1386
5 TraesCS4D01G292900 chr4A 90.214 981 62 16 2185 3149 5989479 5988517 0.000000e+00 1249
6 TraesCS4D01G292900 chr4A 85.936 967 106 21 7999 8957 5982440 5983384 0.000000e+00 1005
7 TraesCS4D01G292900 chr4A 87.435 764 57 21 7210 7954 5984553 5983810 0.000000e+00 843
8 TraesCS4D01G292900 chr4B 94.705 2172 89 11 3116 5278 579454314 579456468 0.000000e+00 3350
9 TraesCS4D01G292900 chr4B 95.745 1739 50 3 5334 7051 579456813 579458548 0.000000e+00 2780
10 TraesCS4D01G292900 chr4B 90.861 1696 81 15 7274 8957 579458580 579460213 0.000000e+00 2206
11 TraesCS4D01G292900 chr4B 91.311 1335 75 18 1830 3149 579453008 579454316 0.000000e+00 1784
12 TraesCS4D01G292900 chr4B 94.832 716 33 2 1120 1831 579452146 579452861 0.000000e+00 1114
13 TraesCS4D01G292900 chr4B 88.660 97 3 4 919 1013 579451644 579451734 2.640000e-20 111
14 TraesCS4D01G292900 chr1D 96.218 899 31 3 1 896 494486673 494487571 0.000000e+00 1469
15 TraesCS4D01G292900 chr1D 96.951 164 3 2 7050 7213 332573297 332573136 3.190000e-69 274
16 TraesCS4D01G292900 chr1A 95.843 890 35 2 1 888 260842037 260842926 0.000000e+00 1437
17 TraesCS4D01G292900 chr3B 95.628 892 37 2 1 890 541062509 541061618 0.000000e+00 1430
18 TraesCS4D01G292900 chr7B 95.265 887 40 2 1 885 33420938 33421824 0.000000e+00 1404
19 TraesCS4D01G292900 chr7B 95.758 165 5 2 7050 7213 708113173 708113336 1.920000e-66 265
20 TraesCS4D01G292900 chr5A 95.062 891 41 3 1 889 343043556 343042667 0.000000e+00 1399
21 TraesCS4D01G292900 chr5A 94.837 891 44 2 1 889 634633402 634632512 0.000000e+00 1389
22 TraesCS4D01G292900 chr5B 94.961 893 40 4 1 890 448833312 448832422 0.000000e+00 1395
23 TraesCS4D01G292900 chr6D 98.844 173 2 0 7050 7222 162299559 162299387 8.730000e-80 309
24 TraesCS4D01G292900 chr6D 93.413 167 7 4 7049 7214 36223251 36223414 2.500000e-60 244
25 TraesCS4D01G292900 chr7A 96.407 167 3 3 7048 7213 62749313 62749477 1.150000e-68 272
26 TraesCS4D01G292900 chr1B 94.828 174 5 4 7043 7215 653081151 653081321 1.480000e-67 268
27 TraesCS4D01G292900 chr2D 93.452 168 9 2 7046 7213 87407529 87407364 1.930000e-61 248
28 TraesCS4D01G292900 chr3D 92.857 168 10 2 7046 7213 459077265 459077430 8.980000e-60 243
29 TraesCS4D01G292900 chrUn 92.398 171 10 3 7045 7213 28925076 28925245 3.230000e-59 241


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G292900 chr4D 463910800 463919756 8956 False 16541.000000 16541 100.000000 1 8957 1 chr4D.!!$F2 8956
1 TraesCS4D01G292900 chr4D 126638482 126639371 889 False 1421.000000 1421 95.506000 1 888 1 chr4D.!!$F1 887
2 TraesCS4D01G292900 chr4A 5983810 5992082 8272 True 2482.750000 6165 91.226750 1015 7954 4 chr4A.!!$R1 6939
3 TraesCS4D01G292900 chr4A 438390782 438391674 892 False 1386.000000 1386 94.737000 1 890 1 chr4A.!!$F2 889
4 TraesCS4D01G292900 chr4A 5982440 5983384 944 False 1005.000000 1005 85.936000 7999 8957 1 chr4A.!!$F1 958
5 TraesCS4D01G292900 chr4B 579451644 579460213 8569 False 1890.833333 3350 92.685667 919 8957 6 chr4B.!!$F1 8038
6 TraesCS4D01G292900 chr1D 494486673 494487571 898 False 1469.000000 1469 96.218000 1 896 1 chr1D.!!$F1 895
7 TraesCS4D01G292900 chr1A 260842037 260842926 889 False 1437.000000 1437 95.843000 1 888 1 chr1A.!!$F1 887
8 TraesCS4D01G292900 chr3B 541061618 541062509 891 True 1430.000000 1430 95.628000 1 890 1 chr3B.!!$R1 889
9 TraesCS4D01G292900 chr7B 33420938 33421824 886 False 1404.000000 1404 95.265000 1 885 1 chr7B.!!$F1 884
10 TraesCS4D01G292900 chr5A 343042667 343043556 889 True 1399.000000 1399 95.062000 1 889 1 chr5A.!!$R1 888
11 TraesCS4D01G292900 chr5A 634632512 634633402 890 True 1389.000000 1389 94.837000 1 889 1 chr5A.!!$R2 888
12 TraesCS4D01G292900 chr5B 448832422 448833312 890 True 1395.000000 1395 94.961000 1 890 1 chr5B.!!$R1 889

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
960 964 0.033228 CATCTCCACGATCCAGCTCC 59.967 60.000 0.00 0.0 0.00 4.70 F
1006 1010 0.254747 CGCTCCTCCATTTGGGGTTA 59.745 55.000 0.00 0.0 37.22 2.85 F
2058 2542 0.176680 CCAGGAGTCGGGAAGTGATG 59.823 60.000 0.00 0.0 0.00 3.07 F
2389 4290 0.535335 TATGTGCCGGGAGAACTGTC 59.465 55.000 2.18 0.0 0.00 3.51 F
2960 4879 0.598065 CTTACAGCCAAACCCTGTGC 59.402 55.000 4.44 0.0 43.01 4.57 F
2966 4885 1.187567 GCCAAACCCTGTGCTTGGAT 61.188 55.000 4.28 0.0 41.88 3.41 F
4290 6243 0.457443 GCTGGAGCAGGGTTTTATGC 59.543 55.000 0.00 0.0 42.87 3.14 F
4867 6825 1.352083 AGTACCAGGAGCAGCTTCAA 58.648 50.000 2.68 0.0 0.00 2.69 F
5152 7114 4.453480 TTCCCTCCTTTCATCACTTGTT 57.547 40.909 0.00 0.0 0.00 2.83 F
6044 8298 0.250467 CGGGTCCCAAGATATGCCAG 60.250 60.000 9.12 0.0 0.00 4.85 F
7543 9834 0.601558 GTTCCAGCGACTGACCACTA 59.398 55.000 8.20 0.0 32.44 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1809 2143 0.304705 GTTTGTCAGGTCAGCACGTG 59.695 55.000 12.28 12.28 39.38 4.49 R
2752 4664 0.596577 TACAGTCCGACACTCAGTGC 59.403 55.000 4.13 0.00 36.98 4.40 R
2909 4824 1.618343 TGAACGAGTCAGAATCTGGCA 59.382 47.619 17.77 0.00 38.73 4.92 R
3444 5394 1.648116 AGTTGCCTTACCTCGGGTAA 58.352 50.000 12.95 12.95 44.72 2.85 R
4016 5969 3.588842 TCTTCAGGTGACCATTCTGGAAT 59.411 43.478 3.63 0.00 40.96 3.01 R
4833 6791 4.469945 CCTGGTACTTCCTGAATTCCTACA 59.530 45.833 2.27 0.00 37.33 2.74 R
5820 8074 0.625849 CCCCATGCCTGTAGGAGTTT 59.374 55.000 1.17 0.00 37.39 2.66 R
6044 8298 3.491267 GCGCAGGACACTCAATATACTTC 59.509 47.826 0.30 0.00 0.00 3.01 R
7019 9295 1.691434 TGCCAAATGGACCAAGGAAAC 59.309 47.619 13.52 0.00 37.39 2.78 R
7729 10022 1.004044 ACAGCTCTTGACATTCAGGGG 59.996 52.381 0.00 0.00 0.00 4.79 R
8489 10787 0.393267 AGAAGTCGAGGAGGAGGTCG 60.393 60.000 0.00 0.00 37.54 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 2.443255 AGCAAAGGAGGTTTGGAAGAGA 59.557 45.455 0.04 0.00 45.10 3.10
119 120 9.820725 ATAGATGAGATTATTGATAGAGCTTGC 57.179 33.333 0.00 0.00 0.00 4.01
135 136 1.014044 TTGCGAGGTTGATCGTGCTC 61.014 55.000 0.00 0.00 44.53 4.26
299 300 7.392673 ACAACTCAGAATGCAACTCAAATATCT 59.607 33.333 0.00 0.00 34.76 1.98
300 301 7.934855 ACTCAGAATGCAACTCAAATATCTT 57.065 32.000 0.00 0.00 34.76 2.40
344 345 9.316730 ACATACAATTTTGTAAATGCATCATCC 57.683 29.630 0.00 0.00 45.74 3.51
445 449 0.462047 GGACATGCTGAAGGGTACGG 60.462 60.000 0.00 0.00 0.00 4.02
487 491 4.822896 ACGACAAAGGTAGGTTTATTGCAA 59.177 37.500 0.00 0.00 0.00 4.08
710 714 7.542130 CCATTATGCATGTGATTTCATCATGAG 59.458 37.037 10.16 0.00 42.04 2.90
905 909 2.640316 AAAACTCCTGTCCAGTGTCC 57.360 50.000 0.00 0.00 0.00 4.02
906 910 1.507140 AAACTCCTGTCCAGTGTCCA 58.493 50.000 0.00 0.00 0.00 4.02
907 911 0.759346 AACTCCTGTCCAGTGTCCAC 59.241 55.000 0.00 0.00 0.00 4.02
908 912 1.122019 ACTCCTGTCCAGTGTCCACC 61.122 60.000 0.00 0.00 0.00 4.61
909 913 1.831652 CTCCTGTCCAGTGTCCACCC 61.832 65.000 0.00 0.00 0.00 4.61
910 914 2.146724 CCTGTCCAGTGTCCACCCA 61.147 63.158 0.00 0.00 0.00 4.51
911 915 1.492133 CCTGTCCAGTGTCCACCCAT 61.492 60.000 0.00 0.00 0.00 4.00
912 916 0.401738 CTGTCCAGTGTCCACCCATT 59.598 55.000 0.00 0.00 0.00 3.16
913 917 0.400213 TGTCCAGTGTCCACCCATTC 59.600 55.000 0.00 0.00 0.00 2.67
914 918 0.400213 GTCCAGTGTCCACCCATTCA 59.600 55.000 0.00 0.00 0.00 2.57
915 919 0.400213 TCCAGTGTCCACCCATTCAC 59.600 55.000 0.00 0.00 0.00 3.18
916 920 0.401738 CCAGTGTCCACCCATTCACT 59.598 55.000 0.00 0.00 41.02 3.41
917 921 1.611673 CCAGTGTCCACCCATTCACTC 60.612 57.143 0.00 0.00 38.79 3.51
951 955 1.320344 AAGCTACGGCATCTCCACGA 61.320 55.000 0.00 0.00 41.70 4.35
958 962 1.445095 GCATCTCCACGATCCAGCT 59.555 57.895 0.00 0.00 0.00 4.24
959 963 0.599728 GCATCTCCACGATCCAGCTC 60.600 60.000 0.00 0.00 0.00 4.09
960 964 0.033228 CATCTCCACGATCCAGCTCC 59.967 60.000 0.00 0.00 0.00 4.70
961 965 0.397675 ATCTCCACGATCCAGCTCCA 60.398 55.000 0.00 0.00 0.00 3.86
962 966 1.039785 TCTCCACGATCCAGCTCCAG 61.040 60.000 0.00 0.00 0.00 3.86
963 967 2.202987 CCACGATCCAGCTCCAGC 60.203 66.667 0.00 0.00 42.49 4.85
1004 1008 2.677228 CGCTCCTCCATTTGGGGT 59.323 61.111 0.00 0.00 37.22 4.95
1006 1010 0.254747 CGCTCCTCCATTTGGGGTTA 59.745 55.000 0.00 0.00 37.22 2.85
1007 1011 1.747206 CGCTCCTCCATTTGGGGTTAG 60.747 57.143 0.00 0.00 37.22 2.34
1009 1013 2.025321 GCTCCTCCATTTGGGGTTAGAA 60.025 50.000 0.00 0.00 37.22 2.10
1011 1015 4.017126 CTCCTCCATTTGGGGTTAGAAAC 58.983 47.826 0.00 0.00 37.22 2.78
1013 1017 4.045334 TCCTCCATTTGGGGTTAGAAACAT 59.955 41.667 0.00 0.00 37.22 2.71
1031 1035 3.116174 ACATCTAAACCCTCCTTCTCCC 58.884 50.000 0.00 0.00 0.00 4.30
1032 1036 2.265526 TCTAAACCCTCCTTCTCCCC 57.734 55.000 0.00 0.00 0.00 4.81
1033 1037 1.439543 TCTAAACCCTCCTTCTCCCCA 59.560 52.381 0.00 0.00 0.00 4.96
1034 1038 1.560146 CTAAACCCTCCTTCTCCCCAC 59.440 57.143 0.00 0.00 0.00 4.61
1035 1039 1.140772 AAACCCTCCTTCTCCCCACC 61.141 60.000 0.00 0.00 0.00 4.61
1036 1040 2.124996 CCCTCCTTCTCCCCACCA 59.875 66.667 0.00 0.00 0.00 4.17
1044 1048 3.979497 CTCCCCACCACCCCCAAC 61.979 72.222 0.00 0.00 0.00 3.77
1083 1087 0.866061 CCTGACGCGGTGAACTATCG 60.866 60.000 12.47 0.00 35.52 2.92
1091 1095 1.121240 GGTGAACTATCGCGATGTCG 58.879 55.000 31.05 20.10 43.27 4.35
1229 1540 3.833645 TACCGCAAGCTCGCCGAT 61.834 61.111 0.00 0.00 0.00 4.18
1385 1696 1.153568 CCTCTCCGATGCGCTCAAA 60.154 57.895 9.73 0.00 0.00 2.69
1530 1844 6.040391 TGGTTTGGACTTTCTGGTTTAATCTG 59.960 38.462 0.00 0.00 0.00 2.90
1587 1905 8.263940 TGTGCTATTATCCAGTTTTTCTACAC 57.736 34.615 0.00 0.00 0.00 2.90
1751 2083 5.034554 TCACGAGCATCTTTTGTCATTTC 57.965 39.130 0.00 0.00 0.00 2.17
1809 2143 5.479306 TCTTCCACATCAAGTACTAGCAAC 58.521 41.667 0.00 0.00 0.00 4.17
1931 2415 0.534873 TGGCAGCTCTAATGTGCGTA 59.465 50.000 0.00 0.00 38.13 4.42
1945 2429 3.149981 TGTGCGTAGATCTGGATAGGAG 58.850 50.000 5.18 0.00 0.00 3.69
2037 2521 5.877564 GTGGTGGAGAAAGAAAGGATTAGAG 59.122 44.000 0.00 0.00 0.00 2.43
2058 2542 0.176680 CCAGGAGTCGGGAAGTGATG 59.823 60.000 0.00 0.00 0.00 3.07
2280 4181 8.746052 ATATTTGATGATTCCGTGGTTTTAGA 57.254 30.769 0.00 0.00 0.00 2.10
2281 4182 5.873179 TTGATGATTCCGTGGTTTTAGAC 57.127 39.130 0.00 0.00 0.00 2.59
2282 4183 5.160607 TGATGATTCCGTGGTTTTAGACT 57.839 39.130 0.00 0.00 0.00 3.24
2283 4184 5.556915 TGATGATTCCGTGGTTTTAGACTT 58.443 37.500 0.00 0.00 0.00 3.01
2284 4185 6.001460 TGATGATTCCGTGGTTTTAGACTTT 58.999 36.000 0.00 0.00 0.00 2.66
2285 4186 6.488683 TGATGATTCCGTGGTTTTAGACTTTT 59.511 34.615 0.00 0.00 0.00 2.27
2286 4187 7.662258 TGATGATTCCGTGGTTTTAGACTTTTA 59.338 33.333 0.00 0.00 0.00 1.52
2287 4188 7.429636 TGATTCCGTGGTTTTAGACTTTTAG 57.570 36.000 0.00 0.00 0.00 1.85
2345 4246 8.037382 TCTAAATGTCAAAGCTCATTTCAGAG 57.963 34.615 12.82 7.22 41.40 3.35
2373 4274 9.160496 AGCTTTTCTCTGTTCTTCTATGTTATG 57.840 33.333 0.00 0.00 0.00 1.90
2376 4277 7.834068 TTCTCTGTTCTTCTATGTTATGTGC 57.166 36.000 0.00 0.00 0.00 4.57
2389 4290 0.535335 TATGTGCCGGGAGAACTGTC 59.465 55.000 2.18 0.00 0.00 3.51
2435 4336 9.696917 GTATTTGATGTTTTCCTGAAACTGATT 57.303 29.630 3.66 0.00 46.25 2.57
2704 4616 8.270030 AGTGATCTTGAATTCTTGATGTATGGA 58.730 33.333 15.08 0.00 0.00 3.41
2739 4651 7.777095 AGTAACTACAAATTTGCCTTCAAACA 58.223 30.769 18.12 0.00 44.11 2.83
2752 4664 6.339730 TGCCTTCAAACAATATAATGCTTGG 58.660 36.000 4.51 0.00 29.53 3.61
2773 4685 0.882474 ACTGAGTGTCGGACTGTAGC 59.118 55.000 9.88 0.00 33.83 3.58
2774 4686 0.881796 CTGAGTGTCGGACTGTAGCA 59.118 55.000 9.88 0.50 33.83 3.49
2801 4713 7.483307 TGCTGCAAATGATAACCTAGAAATTC 58.517 34.615 0.00 0.00 0.00 2.17
2828 4740 7.649057 ACTATCGTAGTTCATCAAATGATCGA 58.351 34.615 5.47 5.47 39.39 3.59
2841 4753 2.467566 TGATCGATCTGGCATGATGG 57.532 50.000 25.02 4.07 0.00 3.51
2845 4758 2.774687 TCGATCTGGCATGATGGATTG 58.225 47.619 0.00 0.24 0.00 2.67
2856 4769 4.696877 GCATGATGGATTGAATACGGATGA 59.303 41.667 0.00 0.00 0.00 2.92
2858 4771 6.605849 CATGATGGATTGAATACGGATGAAC 58.394 40.000 0.00 0.00 0.00 3.18
2859 4772 5.679601 TGATGGATTGAATACGGATGAACA 58.320 37.500 0.00 0.00 0.00 3.18
2860 4773 5.759763 TGATGGATTGAATACGGATGAACAG 59.240 40.000 0.00 0.00 0.00 3.16
2873 4788 6.285990 ACGGATGAACAGTACTAAAAAGTGT 58.714 36.000 0.00 0.00 31.83 3.55
2895 4810 6.363896 GTGTCTTCTCGAAAGGAAGAAGTAAG 59.636 42.308 14.96 0.00 43.75 2.34
2898 4813 2.924290 CTCGAAAGGAAGAAGTAAGCCG 59.076 50.000 0.00 0.00 0.00 5.52
2925 4840 0.809241 GCCTGCCAGATTCTGACTCG 60.809 60.000 15.36 0.00 32.44 4.18
2931 4846 3.265791 GCCAGATTCTGACTCGTTCATT 58.734 45.455 15.36 0.00 32.44 2.57
2932 4847 3.686726 GCCAGATTCTGACTCGTTCATTT 59.313 43.478 15.36 0.00 32.44 2.32
2933 4848 4.154918 GCCAGATTCTGACTCGTTCATTTT 59.845 41.667 15.36 0.00 32.44 1.82
2934 4849 5.672321 GCCAGATTCTGACTCGTTCATTTTC 60.672 44.000 15.36 0.00 32.44 2.29
2960 4879 0.598065 CTTACAGCCAAACCCTGTGC 59.402 55.000 4.44 0.00 43.01 4.57
2966 4885 1.187567 GCCAAACCCTGTGCTTGGAT 61.188 55.000 4.28 0.00 41.88 3.41
2997 4916 4.328536 TGGATGCGTTAGTACAATTTGGT 58.671 39.130 0.78 0.00 0.00 3.67
3014 4933 7.555914 ACAATTTGGTTTATGATAATTTGGGGC 59.444 33.333 0.78 0.00 0.00 5.80
3015 4934 6.627087 TTTGGTTTATGATAATTTGGGGCA 57.373 33.333 0.00 0.00 0.00 5.36
3034 4953 5.010012 GGGGCACAGAATTATGTTTATCTGG 59.990 44.000 2.21 0.00 42.76 3.86
3039 4958 9.638239 GCACAGAATTATGTTTATCTGGAAAAA 57.362 29.630 2.21 0.00 42.76 1.94
3078 4997 2.100252 AGTATTTGGTCATGCTGCATGC 59.900 45.455 32.23 26.03 41.18 4.06
3101 5020 6.090129 GCATGTGGTAAAAACAACACGATAT 58.910 36.000 0.00 0.00 36.67 1.63
3102 5021 6.584563 GCATGTGGTAAAAACAACACGATATT 59.415 34.615 0.00 0.00 36.67 1.28
3162 5112 6.876789 TGAACAACACTCTGACTAGTTGAAAA 59.123 34.615 15.00 2.49 42.87 2.29
3163 5113 7.552687 TGAACAACACTCTGACTAGTTGAAAAT 59.447 33.333 15.00 3.47 42.87 1.82
3278 5228 6.169094 TGAGAAAGATGTTCTTGATGGTCTC 58.831 40.000 8.14 8.14 36.71 3.36
3433 5383 5.047021 TGACTCTTGACCTTTCTGATAGGTG 60.047 44.000 22.10 11.13 45.88 4.00
3444 5394 4.508551 TCTGATAGGTGCATCCACAAAT 57.491 40.909 0.00 0.00 43.88 2.32
3449 5399 2.456577 AGGTGCATCCACAAATTACCC 58.543 47.619 0.00 0.00 43.88 3.69
3467 5417 3.776417 TACCCGAGGTAAGGCAACTAATT 59.224 43.478 0.82 0.00 41.81 1.40
3468 5418 4.225717 TACCCGAGGTAAGGCAACTAATTT 59.774 41.667 0.82 0.00 41.81 1.82
3503 5453 9.281371 GGTTCTCTATAACTTAAAAACACCACT 57.719 33.333 0.00 0.00 0.00 4.00
3514 5464 8.145122 ACTTAAAAACACCACTTCACAAAAAGA 58.855 29.630 0.00 0.00 0.00 2.52
3521 5471 6.053005 CACCACTTCACAAAAAGACTACCTA 58.947 40.000 0.00 0.00 0.00 3.08
3526 5476 8.808529 CACTTCACAAAAAGACTACCTATATCG 58.191 37.037 0.00 0.00 0.00 2.92
3586 5536 3.963129 ACACTCAGAAAAAGGTGAACCA 58.037 40.909 1.62 0.00 38.89 3.67
3596 5546 1.734655 AGGTGAACCACTCCACTGAT 58.265 50.000 1.62 0.00 38.89 2.90
3636 5589 9.325198 ACATTTTTAATTTTGAAGGTGTTCTCC 57.675 29.630 0.00 0.00 33.38 3.71
3637 5590 8.773645 CATTTTTAATTTTGAAGGTGTTCTCCC 58.226 33.333 0.00 0.00 33.38 4.30
3638 5591 6.413783 TTTAATTTTGAAGGTGTTCTCCCC 57.586 37.500 0.00 0.00 33.38 4.81
3691 5644 1.501741 CGTGGCAATCCTTTGGACG 59.498 57.895 0.00 0.00 32.98 4.79
3730 5683 6.823689 TGATCTCTTGAAGTTATTTAGTGGGC 59.176 38.462 0.00 0.00 0.00 5.36
3846 5799 8.824756 AGACTAGGATGAGTGTTATCAACTTA 57.175 34.615 0.00 0.00 31.76 2.24
3933 5886 3.517100 TCCATTCTTGAGTCTCTTCCCAG 59.483 47.826 0.65 0.00 0.00 4.45
4016 5969 3.553508 GGACTCTGCACTTAAACCACGTA 60.554 47.826 0.00 0.00 0.00 3.57
4224 6177 4.985538 AGTTAAATCCCTGCAAGAGTTCA 58.014 39.130 2.70 0.00 34.07 3.18
4278 6231 1.550976 ACTAACACCTACTGCTGGAGC 59.449 52.381 0.00 0.00 42.50 4.70
4290 6243 0.457443 GCTGGAGCAGGGTTTTATGC 59.543 55.000 0.00 0.00 42.87 3.14
4338 6291 7.243604 TCATCCAGGAAATATGTTTGCTTTT 57.756 32.000 6.22 0.00 42.48 2.27
4384 6338 9.003658 CATTCTACTAGGACAGAAACACATTTT 57.996 33.333 7.51 0.00 34.61 1.82
4557 6515 8.511604 AGGTATTGACATTTGAATTGTAGGAG 57.488 34.615 0.00 0.00 0.00 3.69
4833 6791 4.040952 TCTCTCTTGCTTTCTGGCTACTTT 59.959 41.667 0.00 0.00 0.00 2.66
4834 6792 4.067896 TCTCTTGCTTTCTGGCTACTTTG 58.932 43.478 0.00 0.00 0.00 2.77
4867 6825 1.352083 AGTACCAGGAGCAGCTTCAA 58.648 50.000 2.68 0.00 0.00 2.69
4886 6844 7.335422 AGCTTCAATCAACTAGTATTTGTCCTG 59.665 37.037 0.00 0.00 0.00 3.86
4889 6847 6.595326 TCAATCAACTAGTATTTGTCCTGCAG 59.405 38.462 6.78 6.78 0.00 4.41
5152 7114 4.453480 TTCCCTCCTTTCATCACTTGTT 57.547 40.909 0.00 0.00 0.00 2.83
5278 7240 7.759489 ATCCTTTTGCTGATTTAGTGTACAA 57.241 32.000 0.00 0.00 0.00 2.41
5336 7587 6.539173 TGGTTATGGCTCGGTGAATAATATT 58.461 36.000 0.00 0.00 0.00 1.28
5388 7639 8.442384 CAAAACTGAAGTTGTGCTAATTTTTGT 58.558 29.630 0.51 0.00 36.57 2.83
5465 7716 7.255242 CCTTTAATATGCTTGTACAGTCATGGG 60.255 40.741 17.18 8.95 0.00 4.00
5672 7923 4.821805 CAGTTTCCTTTTGAGGCTTGTCTA 59.178 41.667 0.00 0.00 0.00 2.59
5744 7998 5.049828 GCTGTTTGTTGTATGCCTTCTTTT 58.950 37.500 0.00 0.00 0.00 2.27
5745 7999 5.523552 GCTGTTTGTTGTATGCCTTCTTTTT 59.476 36.000 0.00 0.00 0.00 1.94
5746 8000 6.509997 GCTGTTTGTTGTATGCCTTCTTTTTG 60.510 38.462 0.00 0.00 0.00 2.44
5820 8074 5.975988 AGGGGCATCTGAAAACTAAGATA 57.024 39.130 0.00 0.00 31.87 1.98
6044 8298 0.250467 CGGGTCCCAAGATATGCCAG 60.250 60.000 9.12 0.00 0.00 4.85
6089 8343 5.520288 GCTTTTCCAAGGAAGAAAGTTTGAC 59.480 40.000 12.47 0.00 34.84 3.18
6347 8601 7.667219 ACTGTGATGGTAAGATCAAATTTCACT 59.333 33.333 12.69 0.00 34.11 3.41
6420 8675 5.570589 GCAGAAGCTTGTTGATGTTGTATTC 59.429 40.000 2.10 0.00 37.91 1.75
6489 8744 4.835056 TGTATGCTCATATAGTGACCAGCT 59.165 41.667 0.00 0.00 32.22 4.24
6499 8754 7.764443 TCATATAGTGACCAGCTGTAAACTTTC 59.236 37.037 13.81 0.00 0.00 2.62
6544 8820 6.732896 TCTCTTCCCATCCAGAACTATAAC 57.267 41.667 0.00 0.00 0.00 1.89
7006 9282 6.093219 GCATATCACCATGTCAATCCAGATAC 59.907 42.308 0.00 0.00 0.00 2.24
7019 9295 4.837896 TCCAGATACTCTTGATGTAGCG 57.162 45.455 0.00 0.00 32.32 4.26
7062 9338 5.927954 CGATAGTAGTACTCCCTCTGTTC 57.072 47.826 5.96 0.00 0.00 3.18
7063 9339 4.756135 CGATAGTAGTACTCCCTCTGTTCC 59.244 50.000 5.96 0.00 0.00 3.62
7064 9340 5.455040 CGATAGTAGTACTCCCTCTGTTCCT 60.455 48.000 5.96 0.00 0.00 3.36
7065 9341 6.239543 CGATAGTAGTACTCCCTCTGTTCCTA 60.240 46.154 5.96 0.00 0.00 2.94
7066 9342 5.793034 AGTAGTACTCCCTCTGTTCCTAA 57.207 43.478 0.00 0.00 0.00 2.69
7067 9343 6.150034 AGTAGTACTCCCTCTGTTCCTAAA 57.850 41.667 0.00 0.00 0.00 1.85
7068 9344 6.743788 AGTAGTACTCCCTCTGTTCCTAAAT 58.256 40.000 0.00 0.00 0.00 1.40
7069 9345 7.880623 AGTAGTACTCCCTCTGTTCCTAAATA 58.119 38.462 0.00 0.00 0.00 1.40
7070 9346 8.512813 AGTAGTACTCCCTCTGTTCCTAAATAT 58.487 37.037 0.00 0.00 0.00 1.28
7071 9347 9.804977 GTAGTACTCCCTCTGTTCCTAAATATA 57.195 37.037 0.00 0.00 0.00 0.86
7073 9349 9.369672 AGTACTCCCTCTGTTCCTAAATATAAG 57.630 37.037 0.00 0.00 0.00 1.73
7074 9350 9.145442 GTACTCCCTCTGTTCCTAAATATAAGT 57.855 37.037 0.00 0.00 0.00 2.24
7075 9351 8.252624 ACTCCCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
7076 9352 8.068733 ACTCCCTCTGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 0.00 3.24
7077 9353 8.855804 TCCCTCTGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
7078 9354 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
7079 9355 9.907229 CCCTCTGTTCCTAAATATAAGTCTTTT 57.093 33.333 0.00 0.00 0.00 2.27
7095 9371 9.945904 ATAAGTCTTTTTAGAGGTTTCACTAGG 57.054 33.333 0.00 0.00 0.00 3.02
7096 9372 7.613551 AGTCTTTTTAGAGGTTTCACTAGGA 57.386 36.000 0.00 0.00 0.00 2.94
7097 9373 8.030913 AGTCTTTTTAGAGGTTTCACTAGGAA 57.969 34.615 0.00 0.00 0.00 3.36
7098 9374 7.932491 AGTCTTTTTAGAGGTTTCACTAGGAAC 59.068 37.037 0.00 0.00 34.56 3.62
7099 9375 7.932491 GTCTTTTTAGAGGTTTCACTAGGAACT 59.068 37.037 0.00 0.00 46.37 3.01
7100 9376 9.151177 TCTTTTTAGAGGTTTCACTAGGAACTA 57.849 33.333 0.00 0.00 41.75 2.24
7101 9377 9.205719 CTTTTTAGAGGTTTCACTAGGAACTAC 57.794 37.037 0.00 0.00 41.75 2.73
7102 9378 7.844493 TTTAGAGGTTTCACTAGGAACTACA 57.156 36.000 0.00 0.00 41.75 2.74
7103 9379 8.431910 TTTAGAGGTTTCACTAGGAACTACAT 57.568 34.615 0.00 0.00 41.75 2.29
7104 9380 9.537852 TTTAGAGGTTTCACTAGGAACTACATA 57.462 33.333 0.00 0.00 41.75 2.29
7105 9381 7.407393 AGAGGTTTCACTAGGAACTACATAC 57.593 40.000 0.00 0.00 41.75 2.39
7106 9382 6.095160 AGAGGTTTCACTAGGAACTACATACG 59.905 42.308 0.00 0.00 41.75 3.06
7107 9383 5.126707 AGGTTTCACTAGGAACTACATACGG 59.873 44.000 0.00 0.00 41.75 4.02
7108 9384 5.126061 GGTTTCACTAGGAACTACATACGGA 59.874 44.000 0.00 0.00 41.75 4.69
7109 9385 6.183360 GGTTTCACTAGGAACTACATACGGAT 60.183 42.308 0.00 0.00 41.75 4.18
7110 9386 6.387041 TTCACTAGGAACTACATACGGATG 57.613 41.667 5.94 5.94 41.75 3.51
7111 9387 6.379133 TTTCACTAGGAACTACATACGGATGT 59.621 38.462 19.12 19.12 41.44 3.06
7112 9388 6.594744 TCACTAGGAACTACATACGGATGTA 58.405 40.000 19.32 19.32 45.77 2.29
7113 9389 7.229308 TCACTAGGAACTACATACGGATGTAT 58.771 38.462 20.64 7.28 45.42 2.29
7114 9390 8.377799 TCACTAGGAACTACATACGGATGTATA 58.622 37.037 20.64 9.08 45.42 1.47
7115 9391 9.175312 CACTAGGAACTACATACGGATGTATAT 57.825 37.037 20.64 12.40 45.42 0.86
7151 9427 7.992754 AGAGTTTAGATTCACTCATTTTGCT 57.007 32.000 2.36 0.00 41.77 3.91
7152 9428 8.038492 AGAGTTTAGATTCACTCATTTTGCTC 57.962 34.615 2.36 0.00 41.77 4.26
7153 9429 7.120432 AGAGTTTAGATTCACTCATTTTGCTCC 59.880 37.037 2.36 0.00 41.77 4.70
7154 9430 5.801350 TTAGATTCACTCATTTTGCTCCG 57.199 39.130 0.00 0.00 0.00 4.63
7155 9431 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
7156 9432 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
7157 9433 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
7158 9434 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
7159 9435 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
7160 9436 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
7161 9437 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
7162 9438 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
7163 9439 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
7164 9440 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
7165 9441 5.670485 TCATTTTGCTCCGTATGTAGTCAT 58.330 37.500 0.00 0.00 38.00 3.06
7166 9442 5.753438 TCATTTTGCTCCGTATGTAGTCATC 59.247 40.000 0.00 0.00 35.70 2.92
7167 9443 5.339008 TTTTGCTCCGTATGTAGTCATCT 57.661 39.130 0.00 0.00 35.70 2.90
7168 9444 6.459670 TTTTGCTCCGTATGTAGTCATCTA 57.540 37.500 0.00 0.00 35.70 1.98
7169 9445 5.690997 TTGCTCCGTATGTAGTCATCTAG 57.309 43.478 0.00 0.00 35.70 2.43
7170 9446 4.715713 TGCTCCGTATGTAGTCATCTAGT 58.284 43.478 0.00 0.00 35.70 2.57
7171 9447 4.515567 TGCTCCGTATGTAGTCATCTAGTG 59.484 45.833 0.00 0.00 35.70 2.74
7172 9448 4.755629 GCTCCGTATGTAGTCATCTAGTGA 59.244 45.833 0.00 0.00 35.70 3.41
7173 9449 5.238868 GCTCCGTATGTAGTCATCTAGTGAA 59.761 44.000 0.00 0.00 38.90 3.18
7174 9450 6.238676 GCTCCGTATGTAGTCATCTAGTGAAA 60.239 42.308 0.00 0.00 38.90 2.69
7175 9451 7.522399 GCTCCGTATGTAGTCATCTAGTGAAAT 60.522 40.741 0.00 0.00 38.90 2.17
7176 9452 7.649057 TCCGTATGTAGTCATCTAGTGAAATG 58.351 38.462 0.00 0.00 38.90 2.32
7177 9453 7.284716 TCCGTATGTAGTCATCTAGTGAAATGT 59.715 37.037 0.00 0.00 38.90 2.71
7178 9454 7.591795 CCGTATGTAGTCATCTAGTGAAATGTC 59.408 40.741 0.00 0.00 38.90 3.06
7179 9455 8.346300 CGTATGTAGTCATCTAGTGAAATGTCT 58.654 37.037 0.00 0.00 38.90 3.41
7207 9483 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
7208 9484 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
7225 9501 4.503296 CGGAGGGAGTATTATGGAAACTGG 60.503 50.000 0.00 0.00 0.00 4.00
7227 9503 5.605488 GGAGGGAGTATTATGGAAACTGGTA 59.395 44.000 0.00 0.00 0.00 3.25
7249 9525 6.534079 GGTAAAGTGTACGAGTGAAGCAATAT 59.466 38.462 0.00 0.00 0.00 1.28
7392 9671 6.959639 AGTACTGTTTTCACATGTTCCATT 57.040 33.333 0.00 0.00 30.39 3.16
7460 9744 6.916360 AGTAATGTTTCCACATGTTCCATT 57.084 33.333 0.00 3.33 43.34 3.16
7500 9784 5.891551 GGTTGTGGGAATATATTTGACCTGT 59.108 40.000 0.00 0.00 0.00 4.00
7536 9827 1.511850 TTCACATGTTCCAGCGACTG 58.488 50.000 0.00 0.00 0.00 3.51
7543 9834 0.601558 GTTCCAGCGACTGACCACTA 59.398 55.000 8.20 0.00 32.44 2.74
7545 9836 1.215647 CCAGCGACTGACCACTACC 59.784 63.158 8.20 0.00 32.44 3.18
7546 9837 1.154016 CAGCGACTGACCACTACCG 60.154 63.158 1.18 0.00 32.44 4.02
7670 9963 2.123897 ACGGTGTTTGGCTGCCTT 60.124 55.556 21.03 0.00 0.00 4.35
7679 9972 0.951558 TTGGCTGCCTTTTTCTCGAC 59.048 50.000 21.03 0.00 0.00 4.20
7729 10022 4.067896 TCATCTTGTCAAGAGCTGTTTCC 58.932 43.478 19.64 0.00 41.61 3.13
7734 10027 0.401738 TCAAGAGCTGTTTCCCCCTG 59.598 55.000 0.00 0.00 0.00 4.45
7737 10030 1.376649 AGAGCTGTTTCCCCCTGAAT 58.623 50.000 0.00 0.00 31.67 2.57
7831 10125 1.872952 CGAACTGCATTTGTGACAGGA 59.127 47.619 0.00 0.00 35.70 3.86
7836 10130 4.910195 ACTGCATTTGTGACAGGATAGAA 58.090 39.130 0.00 0.00 35.70 2.10
7839 10133 5.316167 TGCATTTGTGACAGGATAGAAACT 58.684 37.500 0.00 0.00 0.00 2.66
7841 10135 5.645497 GCATTTGTGACAGGATAGAAACTCT 59.355 40.000 0.00 0.00 0.00 3.24
7932 10226 5.163864 TGCTGTTTCTGATACTAATGTTGCG 60.164 40.000 0.17 0.00 0.00 4.85
7954 10248 6.420903 TGCGTGCTTATGAGATTGAACTATAC 59.579 38.462 0.00 0.00 0.00 1.47
7955 10249 6.420903 GCGTGCTTATGAGATTGAACTATACA 59.579 38.462 0.00 0.00 0.00 2.29
7956 10250 7.042725 GCGTGCTTATGAGATTGAACTATACAA 60.043 37.037 0.00 0.00 0.00 2.41
7957 10251 8.269424 CGTGCTTATGAGATTGAACTATACAAC 58.731 37.037 0.00 0.00 0.00 3.32
7958 10252 8.269424 GTGCTTATGAGATTGAACTATACAACG 58.731 37.037 0.00 0.00 0.00 4.10
7959 10253 7.438160 TGCTTATGAGATTGAACTATACAACGG 59.562 37.037 0.00 0.00 0.00 4.44
7960 10254 7.438459 GCTTATGAGATTGAACTATACAACGGT 59.562 37.037 0.00 0.00 0.00 4.83
7961 10255 9.961265 CTTATGAGATTGAACTATACAACGGTA 57.039 33.333 0.00 0.00 0.00 4.02
7962 10256 9.740239 TTATGAGATTGAACTATACAACGGTAC 57.260 33.333 0.00 0.00 30.94 3.34
8039 10335 6.631962 AGTTTTCCAGAGTAATAGGAAGTCG 58.368 40.000 0.00 0.00 41.97 4.18
8062 10358 8.336080 GTCGGAAGGAAATGTTAGAATATGTTC 58.664 37.037 0.00 0.00 34.46 3.18
8083 10379 5.591643 TCGTGTTTAGATGAGTTTTCTGC 57.408 39.130 0.00 0.00 0.00 4.26
8182 10478 6.069673 ACCCTCCATCATCAAAAGTGTGTATA 60.070 38.462 0.00 0.00 0.00 1.47
8282 10580 0.251077 AGCTCCACAAAGCCCAAGAG 60.251 55.000 0.00 0.00 43.56 2.85
8315 10613 2.297033 GTGACACCCTGATTGCACATTT 59.703 45.455 0.00 0.00 0.00 2.32
8333 10631 3.574284 TTTTATGTGCACATGAGCCAC 57.426 42.857 36.72 10.86 37.15 5.01
8335 10633 0.248843 TATGTGCACATGAGCCACGA 59.751 50.000 36.72 15.73 37.15 4.35
8337 10635 1.669115 GTGCACATGAGCCACGACT 60.669 57.895 13.17 0.00 0.00 4.18
8340 10638 1.375140 CACATGAGCCACGACTGCT 60.375 57.895 0.00 0.00 43.03 4.24
8374 10672 3.378742 ACTGATCCTACGTACTGCAAGAG 59.621 47.826 0.00 0.00 37.43 2.85
8375 10673 2.099263 TGATCCTACGTACTGCAAGAGC 59.901 50.000 0.00 0.00 42.57 4.09
8387 10685 2.626088 GCAAGAGCAGCGAATTCTTT 57.374 45.000 3.52 0.00 41.58 2.52
8389 10687 2.161211 GCAAGAGCAGCGAATTCTTTCT 59.839 45.455 3.52 0.00 41.58 2.52
8398 10696 4.514441 CAGCGAATTCTTTCTAGCCATGAT 59.486 41.667 3.52 0.00 0.00 2.45
8400 10698 4.512944 GCGAATTCTTTCTAGCCATGATCA 59.487 41.667 0.00 0.00 0.00 2.92
8405 10703 2.602257 TTCTAGCCATGATCACCACG 57.398 50.000 0.00 0.00 0.00 4.94
8406 10704 0.752658 TCTAGCCATGATCACCACGG 59.247 55.000 0.00 0.00 0.00 4.94
8409 10707 2.896854 CCATGATCACCACGGCCG 60.897 66.667 26.86 26.86 0.00 6.13
8453 10751 2.102252 AGCCATCCTTTCTCTCGTCATC 59.898 50.000 0.00 0.00 0.00 2.92
8473 10771 2.159043 TCATCATCTTCTTCTCCACCGC 60.159 50.000 0.00 0.00 0.00 5.68
8506 10804 1.378778 CCGACCTCCTCCTCGACTT 60.379 63.158 0.00 0.00 31.24 3.01
8511 10809 0.967887 CCTCCTCCTCGACTTCTGCA 60.968 60.000 0.00 0.00 0.00 4.41
8910 11211 1.291184 CTTCATGCGCAACGAGGACA 61.291 55.000 17.11 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 1.136774 TCGAGCACGATCAACCTCG 59.863 57.895 15.65 15.65 46.11 4.63
135 136 2.095161 GGTATTCCAGTATCGCCTCTCG 60.095 54.545 0.00 0.00 40.15 4.04
234 235 4.119556 TCCGTCTCTCCCATCATAGATT 57.880 45.455 0.00 0.00 0.00 2.40
242 243 3.432326 GCACTAATTTCCGTCTCTCCCAT 60.432 47.826 0.00 0.00 0.00 4.00
299 300 1.494721 GTGAGGGCTATGATCCCCAAA 59.505 52.381 7.44 0.00 45.03 3.28
300 301 1.140312 GTGAGGGCTATGATCCCCAA 58.860 55.000 7.44 0.00 45.03 4.12
344 345 3.568538 CTTTTTCATGGACGCCTTTGAG 58.431 45.455 0.00 0.00 0.00 3.02
487 491 5.261040 TGGTCAATCTTTCCATTTCCTCT 57.739 39.130 0.00 0.00 0.00 3.69
710 714 9.400638 CCTCTCTATTACAATGTTCGAATCTAC 57.599 37.037 0.00 0.00 0.00 2.59
779 783 4.083802 CCTCGAACCAATCTGAAGTTGAAC 60.084 45.833 0.00 0.00 0.00 3.18
890 894 1.674057 GGTGGACACTGGACAGGAG 59.326 63.158 4.14 0.00 0.00 3.69
891 895 1.841556 GGGTGGACACTGGACAGGA 60.842 63.158 4.14 0.00 0.00 3.86
892 896 1.492133 ATGGGTGGACACTGGACAGG 61.492 60.000 4.14 0.00 0.00 4.00
893 897 0.401738 AATGGGTGGACACTGGACAG 59.598 55.000 2.13 0.00 0.00 3.51
894 898 0.400213 GAATGGGTGGACACTGGACA 59.600 55.000 2.13 0.00 0.00 4.02
895 899 0.400213 TGAATGGGTGGACACTGGAC 59.600 55.000 2.13 0.00 0.00 4.02
896 900 0.400213 GTGAATGGGTGGACACTGGA 59.600 55.000 2.13 0.00 0.00 3.86
897 901 0.401738 AGTGAATGGGTGGACACTGG 59.598 55.000 0.00 0.00 41.16 4.00
898 902 1.611673 GGAGTGAATGGGTGGACACTG 60.612 57.143 0.00 0.00 42.45 3.66
899 903 0.693049 GGAGTGAATGGGTGGACACT 59.307 55.000 0.00 0.00 44.56 3.55
900 904 0.400213 TGGAGTGAATGGGTGGACAC 59.600 55.000 0.00 0.00 0.00 3.67
901 905 0.692476 CTGGAGTGAATGGGTGGACA 59.308 55.000 0.00 0.00 0.00 4.02
902 906 0.678048 GCTGGAGTGAATGGGTGGAC 60.678 60.000 0.00 0.00 0.00 4.02
903 907 1.133181 TGCTGGAGTGAATGGGTGGA 61.133 55.000 0.00 0.00 0.00 4.02
904 908 0.962356 GTGCTGGAGTGAATGGGTGG 60.962 60.000 0.00 0.00 0.00 4.61
905 909 1.300971 CGTGCTGGAGTGAATGGGTG 61.301 60.000 0.00 0.00 0.00 4.61
906 910 1.003355 CGTGCTGGAGTGAATGGGT 60.003 57.895 0.00 0.00 0.00 4.51
907 911 0.321564 TTCGTGCTGGAGTGAATGGG 60.322 55.000 0.00 0.00 0.00 4.00
908 912 1.667724 GATTCGTGCTGGAGTGAATGG 59.332 52.381 2.07 0.00 31.56 3.16
909 913 1.325640 CGATTCGTGCTGGAGTGAATG 59.674 52.381 0.00 0.00 31.56 2.67
910 914 1.066858 ACGATTCGTGCTGGAGTGAAT 60.067 47.619 11.56 0.00 39.18 2.57
911 915 0.317160 ACGATTCGTGCTGGAGTGAA 59.683 50.000 11.56 0.00 39.18 3.18
912 916 1.170442 TACGATTCGTGCTGGAGTGA 58.830 50.000 21.40 0.00 41.39 3.41
913 917 1.990799 TTACGATTCGTGCTGGAGTG 58.009 50.000 21.40 0.00 41.39 3.51
914 918 2.607187 CTTTACGATTCGTGCTGGAGT 58.393 47.619 21.40 0.00 41.39 3.85
915 919 1.324736 GCTTTACGATTCGTGCTGGAG 59.675 52.381 21.40 11.87 41.39 3.86
916 920 1.067142 AGCTTTACGATTCGTGCTGGA 60.067 47.619 21.40 0.00 41.39 3.86
917 921 1.359848 AGCTTTACGATTCGTGCTGG 58.640 50.000 21.40 9.75 41.39 4.85
951 955 2.041762 TGGAGGCTGGAGCTGGAT 59.958 61.111 0.00 0.00 41.70 3.41
963 967 3.782443 GTGTACCCCGCCTGGAGG 61.782 72.222 9.83 9.83 37.49 4.30
974 978 2.103736 GAGCGGGCTACGTGTACC 59.896 66.667 0.00 0.00 46.52 3.34
976 980 2.044650 AGGAGCGGGCTACGTGTA 60.045 61.111 0.00 0.00 46.52 2.90
1004 1008 7.311109 GGAGAAGGAGGGTTTAGATGTTTCTAA 60.311 40.741 0.00 0.00 41.61 2.10
1006 1010 5.045505 GGAGAAGGAGGGTTTAGATGTTTCT 60.046 44.000 0.00 0.00 35.90 2.52
1007 1011 5.186942 GGAGAAGGAGGGTTTAGATGTTTC 58.813 45.833 0.00 0.00 0.00 2.78
1009 1013 3.523972 GGGAGAAGGAGGGTTTAGATGTT 59.476 47.826 0.00 0.00 0.00 2.71
1011 1015 2.439880 GGGGAGAAGGAGGGTTTAGATG 59.560 54.545 0.00 0.00 0.00 2.90
1013 1017 1.439543 TGGGGAGAAGGAGGGTTTAGA 59.560 52.381 0.00 0.00 0.00 2.10
1063 1067 1.146358 GATAGTTCACCGCGTCAGGC 61.146 60.000 4.92 0.00 38.69 4.85
1064 1068 0.866061 CGATAGTTCACCGCGTCAGG 60.866 60.000 4.92 0.00 37.30 3.86
1229 1540 4.351938 CCGCCGTCGAACACCTCA 62.352 66.667 0.00 0.00 38.10 3.86
1397 1708 6.678568 ATTCATACTAGCAGGCATAAGACT 57.321 37.500 0.00 0.00 0.00 3.24
1402 1713 5.233083 AGCAATTCATACTAGCAGGCATA 57.767 39.130 0.00 0.00 0.00 3.14
1440 1751 5.049198 CACAGCTTTCAATCTAGTTGCTTCA 60.049 40.000 0.00 0.00 37.74 3.02
1456 1770 5.277857 AGTGTCACTAGTTACACAGCTTT 57.722 39.130 31.66 15.27 46.71 3.51
1587 1905 2.095364 GCAAAGATCACTGCCAAGACAG 60.095 50.000 7.61 0.00 43.59 3.51
1751 2083 8.883731 CATACTTCTTAGTCATTAACAACCCTG 58.116 37.037 0.00 0.00 35.78 4.45
1809 2143 0.304705 GTTTGTCAGGTCAGCACGTG 59.695 55.000 12.28 12.28 39.38 4.49
1931 2415 4.169856 ACCTCAGTTCTCCTATCCAGATCT 59.830 45.833 0.00 0.00 0.00 2.75
1945 2429 2.814919 TCTGACTCTTCGACCTCAGTTC 59.185 50.000 7.38 0.00 33.28 3.01
2037 2521 0.898789 TCACTTCCCGACTCCTGGAC 60.899 60.000 0.00 0.00 0.00 4.02
2078 2562 2.910199 TCATCAATTCCAAGCTCCTCG 58.090 47.619 0.00 0.00 0.00 4.63
2328 4229 3.341823 GCTCCTCTGAAATGAGCTTTGA 58.658 45.455 13.27 0.00 46.19 2.69
2345 4246 6.169800 ACATAGAAGAACAGAGAAAAGCTCC 58.830 40.000 0.00 0.00 45.10 4.70
2373 4274 1.079750 GAGACAGTTCTCCCGGCAC 60.080 63.158 0.00 0.00 42.42 5.01
2628 4531 7.995289 ACCAATTGAAAATATGCATACGAGAA 58.005 30.769 8.99 0.00 0.00 2.87
2677 4589 9.551734 CCATACATCAAGAATTCAAGATCACTA 57.448 33.333 8.44 1.12 0.00 2.74
2678 4590 8.270030 TCCATACATCAAGAATTCAAGATCACT 58.730 33.333 8.44 0.00 0.00 3.41
2679 4591 8.442632 TCCATACATCAAGAATTCAAGATCAC 57.557 34.615 8.44 0.00 0.00 3.06
2680 4592 9.117183 CTTCCATACATCAAGAATTCAAGATCA 57.883 33.333 8.44 1.70 0.00 2.92
2681 4593 9.118300 ACTTCCATACATCAAGAATTCAAGATC 57.882 33.333 8.44 0.00 0.00 2.75
2682 4594 9.471702 AACTTCCATACATCAAGAATTCAAGAT 57.528 29.630 8.44 7.47 0.00 2.40
2683 4595 8.868522 AACTTCCATACATCAAGAATTCAAGA 57.131 30.769 8.44 5.28 0.00 3.02
2686 4598 9.958180 TCTTAACTTCCATACATCAAGAATTCA 57.042 29.630 8.44 0.00 0.00 2.57
2690 4602 9.793259 ACTTTCTTAACTTCCATACATCAAGAA 57.207 29.630 0.00 0.00 0.00 2.52
2724 4636 9.452287 AAGCATTATATTGTTTGAAGGCAAATT 57.548 25.926 0.00 0.00 45.01 1.82
2739 4651 5.195940 ACACTCAGTGCCAAGCATTATATT 58.804 37.500 4.13 0.00 41.91 1.28
2752 4664 0.596577 TACAGTCCGACACTCAGTGC 59.403 55.000 4.13 0.00 36.98 4.40
2773 4685 4.877823 TCTAGGTTATCATTTGCAGCAGTG 59.122 41.667 0.00 0.00 0.00 3.66
2774 4686 5.102953 TCTAGGTTATCATTTGCAGCAGT 57.897 39.130 0.00 0.00 0.00 4.40
2806 4718 7.328005 CAGATCGATCATTTGATGAACTACGAT 59.672 37.037 26.47 16.74 43.50 3.73
2828 4740 4.698780 CGTATTCAATCCATCATGCCAGAT 59.301 41.667 0.00 0.00 0.00 2.90
2841 4753 8.867112 TTAGTACTGTTCATCCGTATTCAATC 57.133 34.615 5.39 0.00 0.00 2.67
2845 4758 9.148104 ACTTTTTAGTACTGTTCATCCGTATTC 57.852 33.333 5.39 0.00 0.00 1.75
2856 4769 7.486647 TCGAGAAGACACTTTTTAGTACTGTT 58.513 34.615 5.39 0.00 0.00 3.16
2858 4771 7.925703 TTCGAGAAGACACTTTTTAGTACTG 57.074 36.000 5.39 0.00 0.00 2.74
2859 4772 7.652507 CCTTTCGAGAAGACACTTTTTAGTACT 59.347 37.037 0.00 0.00 0.00 2.73
2860 4773 7.650903 TCCTTTCGAGAAGACACTTTTTAGTAC 59.349 37.037 8.37 0.00 0.00 2.73
2909 4824 1.618343 TGAACGAGTCAGAATCTGGCA 59.382 47.619 17.77 0.00 38.73 4.92
2915 4830 5.760253 ACACAGAAAATGAACGAGTCAGAAT 59.240 36.000 0.00 0.00 40.43 2.40
2989 4908 7.555554 TGCCCCAAATTATCATAAACCAAATTG 59.444 33.333 0.00 0.00 0.00 2.32
2997 4916 7.673641 ATTCTGTGCCCCAAATTATCATAAA 57.326 32.000 0.00 0.00 0.00 1.40
3046 4965 8.213679 AGCATGACCAAATACTATGAACAGTAT 58.786 33.333 0.00 0.00 42.30 2.12
3047 4966 7.495606 CAGCATGACCAAATACTATGAACAGTA 59.504 37.037 0.00 0.00 39.69 2.74
3049 4968 6.722301 CAGCATGACCAAATACTATGAACAG 58.278 40.000 0.00 0.00 39.69 3.16
3078 4997 7.805542 TCAATATCGTGTTGTTTTTACCACATG 59.194 33.333 0.00 0.00 0.00 3.21
3101 5020 2.161855 AGCCGAGAAATTGCACATCAA 58.838 42.857 0.00 0.00 39.32 2.57
3102 5021 1.825090 AGCCGAGAAATTGCACATCA 58.175 45.000 0.00 0.00 0.00 3.07
3203 5153 8.635765 ACAATGACATAACAGGACTTTACAAT 57.364 30.769 0.00 0.00 0.00 2.71
3433 5383 1.676006 CCTCGGGTAATTTGTGGATGC 59.324 52.381 0.00 0.00 0.00 3.91
3444 5394 1.648116 AGTTGCCTTACCTCGGGTAA 58.352 50.000 12.95 12.95 44.72 2.85
3449 5399 6.103997 TGTAGAAATTAGTTGCCTTACCTCG 58.896 40.000 0.00 0.00 0.00 4.63
3458 5408 8.515414 AGAGAACCAATTGTAGAAATTAGTTGC 58.485 33.333 4.43 0.00 0.00 4.17
3489 5439 8.432359 GTCTTTTTGTGAAGTGGTGTTTTTAAG 58.568 33.333 0.00 0.00 0.00 1.85
3492 5442 6.521162 AGTCTTTTTGTGAAGTGGTGTTTTT 58.479 32.000 0.00 0.00 0.00 1.94
3500 5450 8.808529 CGATATAGGTAGTCTTTTTGTGAAGTG 58.191 37.037 0.00 0.00 0.00 3.16
3503 5453 9.715121 AAACGATATAGGTAGTCTTTTTGTGAA 57.285 29.630 0.00 0.00 0.00 3.18
3514 5464 5.104652 ACTTGGGCAAAACGATATAGGTAGT 60.105 40.000 0.00 0.00 0.00 2.73
3521 5471 5.185056 AGCTTAAACTTGGGCAAAACGATAT 59.815 36.000 0.00 0.00 0.00 1.63
3526 5476 4.857037 CGATAGCTTAAACTTGGGCAAAAC 59.143 41.667 0.00 0.00 0.00 2.43
3586 5536 6.882768 AGAGAGGAAAATTATCAGTGGAGT 57.117 37.500 0.00 0.00 0.00 3.85
3636 5589 6.936279 TGAAAGAGATGACAGTTTACTAGGG 58.064 40.000 0.00 0.00 0.00 3.53
3637 5590 8.833231 TTTGAAAGAGATGACAGTTTACTAGG 57.167 34.615 0.00 0.00 0.00 3.02
3638 5591 9.482627 ACTTTGAAAGAGATGACAGTTTACTAG 57.517 33.333 12.53 0.00 0.00 2.57
3691 5644 3.726607 AGAGATCATCGCCAGACATTTC 58.273 45.455 0.00 0.00 0.00 2.17
3730 5683 5.344743 TCCAATTCCTCTAGCTGTGTAAG 57.655 43.478 0.00 0.00 0.00 2.34
3739 5692 7.072263 ACAATGATACCTCCAATTCCTCTAG 57.928 40.000 0.00 0.00 0.00 2.43
3742 5695 4.752101 CGACAATGATACCTCCAATTCCTC 59.248 45.833 0.00 0.00 0.00 3.71
3747 5700 5.745227 AGTTTCGACAATGATACCTCCAAT 58.255 37.500 0.00 0.00 0.00 3.16
3809 5762 7.338196 CACTCATCCTAGTCTAGAAAGAAGACA 59.662 40.741 8.56 0.00 44.77 3.41
3933 5886 8.810427 CATTGACACCATTCAGCAAATTTATAC 58.190 33.333 0.00 0.00 0.00 1.47
4016 5969 3.588842 TCTTCAGGTGACCATTCTGGAAT 59.411 43.478 3.63 0.00 40.96 3.01
4278 6231 8.006298 TGGATTTAGTATTGCATAAAACCCTG 57.994 34.615 11.93 0.00 34.57 4.45
4338 6291 8.463930 AGAATGTTTCTCATTGTCCAAAAGTA 57.536 30.769 0.00 0.00 45.49 2.24
4384 6338 9.647797 ATCACGATATAACACAGTAAAACAAGA 57.352 29.630 0.00 0.00 0.00 3.02
4833 6791 4.469945 CCTGGTACTTCCTGAATTCCTACA 59.530 45.833 2.27 0.00 37.33 2.74
4834 6792 4.715297 TCCTGGTACTTCCTGAATTCCTAC 59.285 45.833 2.27 0.00 37.33 3.18
4867 6825 6.299805 TCTGCAGGACAAATACTAGTTGAT 57.700 37.500 15.13 0.00 0.00 2.57
5119 7081 3.961484 AGGAGGGAAAGGAAATGGATC 57.039 47.619 0.00 0.00 0.00 3.36
5120 7082 4.045846 TGAAAGGAGGGAAAGGAAATGGAT 59.954 41.667 0.00 0.00 0.00 3.41
5152 7114 8.243961 TGAACAAATATTCCAACAAAAGGAGA 57.756 30.769 0.00 0.00 36.33 3.71
5309 7455 4.640771 ATTCACCGAGCCATAACCATAT 57.359 40.909 0.00 0.00 0.00 1.78
5412 7663 5.410067 CAATAAAACCAGGTGGCATACAAG 58.590 41.667 0.00 0.00 39.32 3.16
5493 7744 8.193438 AGCTAATTTCCTTTGAAGCATATGTTC 58.807 33.333 4.29 7.66 0.00 3.18
5672 7923 2.704572 GCTAAGTGGTGCTTCATGACT 58.295 47.619 0.00 0.00 38.57 3.41
5744 7998 4.832248 AGCTATGTCGGATGTTTCTTCAA 58.168 39.130 0.00 0.00 0.00 2.69
5745 7999 4.471904 AGCTATGTCGGATGTTTCTTCA 57.528 40.909 0.00 0.00 0.00 3.02
5746 8000 5.803020 AAAGCTATGTCGGATGTTTCTTC 57.197 39.130 0.00 0.00 0.00 2.87
5759 8013 7.175641 ACTGAATTCAAAGCAGTAAAGCTATGT 59.824 33.333 9.88 0.00 45.89 2.29
5800 8054 7.201741 GGAGTTTATCTTAGTTTTCAGATGCCC 60.202 40.741 0.00 0.00 31.89 5.36
5820 8074 0.625849 CCCCATGCCTGTAGGAGTTT 59.374 55.000 1.17 0.00 37.39 2.66
5966 8220 5.934625 ACTGACAGTGGTATCAATTGTTCTC 59.065 40.000 7.47 0.00 0.00 2.87
6044 8298 3.491267 GCGCAGGACACTCAATATACTTC 59.509 47.826 0.30 0.00 0.00 3.01
6440 8695 9.586732 AGCTAGAGCCTATAAGATATAATCAGG 57.413 37.037 0.00 0.00 43.38 3.86
6489 8744 6.810182 GGAGCTAGATTACACGAAAGTTTACA 59.190 38.462 0.00 0.00 46.40 2.41
6499 8754 6.750148 AGAAATTAGGGAGCTAGATTACACG 58.250 40.000 0.00 0.00 0.00 4.49
6544 8820 6.467677 AGTATTCATATGGTTCATCCTTCCG 58.532 40.000 2.13 0.00 37.07 4.30
7006 9282 3.372206 CCAAGGAAACGCTACATCAAGAG 59.628 47.826 0.00 0.00 0.00 2.85
7019 9295 1.691434 TGCCAAATGGACCAAGGAAAC 59.309 47.619 13.52 0.00 37.39 2.78
7047 9323 9.369672 CTTATATTTAGGAACAGAGGGAGTACT 57.630 37.037 0.00 0.00 0.00 2.73
7048 9324 9.145442 ACTTATATTTAGGAACAGAGGGAGTAC 57.855 37.037 0.00 0.00 0.00 2.73
7049 9325 9.364653 GACTTATATTTAGGAACAGAGGGAGTA 57.635 37.037 0.00 0.00 0.00 2.59
7050 9326 8.068733 AGACTTATATTTAGGAACAGAGGGAGT 58.931 37.037 0.00 0.00 0.00 3.85
7051 9327 8.485578 AGACTTATATTTAGGAACAGAGGGAG 57.514 38.462 0.00 0.00 0.00 4.30
7052 9328 8.855804 AAGACTTATATTTAGGAACAGAGGGA 57.144 34.615 0.00 0.00 0.00 4.20
7053 9329 9.907229 AAAAGACTTATATTTAGGAACAGAGGG 57.093 33.333 0.00 0.00 0.00 4.30
7069 9345 9.945904 CCTAGTGAAACCTCTAAAAAGACTTAT 57.054 33.333 0.00 0.00 37.80 1.73
7070 9346 9.151177 TCCTAGTGAAACCTCTAAAAAGACTTA 57.849 33.333 0.00 0.00 37.80 2.24
7071 9347 8.030913 TCCTAGTGAAACCTCTAAAAAGACTT 57.969 34.615 0.00 0.00 37.80 3.01
7072 9348 7.613551 TCCTAGTGAAACCTCTAAAAAGACT 57.386 36.000 0.00 0.00 37.80 3.24
7073 9349 7.932491 AGTTCCTAGTGAAACCTCTAAAAAGAC 59.068 37.037 0.00 0.00 37.80 3.01
7074 9350 8.030913 AGTTCCTAGTGAAACCTCTAAAAAGA 57.969 34.615 0.00 0.00 37.80 2.52
7075 9351 9.205719 GTAGTTCCTAGTGAAACCTCTAAAAAG 57.794 37.037 0.00 0.00 37.80 2.27
7076 9352 8.707449 TGTAGTTCCTAGTGAAACCTCTAAAAA 58.293 33.333 0.00 0.00 37.80 1.94
7077 9353 8.253867 TGTAGTTCCTAGTGAAACCTCTAAAA 57.746 34.615 0.00 0.00 37.80 1.52
7078 9354 7.844493 TGTAGTTCCTAGTGAAACCTCTAAA 57.156 36.000 0.00 0.00 37.80 1.85
7079 9355 8.964772 GTATGTAGTTCCTAGTGAAACCTCTAA 58.035 37.037 0.00 0.00 37.80 2.10
7080 9356 7.281774 CGTATGTAGTTCCTAGTGAAACCTCTA 59.718 40.741 0.00 0.00 37.80 2.43
7081 9357 6.095160 CGTATGTAGTTCCTAGTGAAACCTCT 59.905 42.308 0.00 0.00 37.80 3.69
7082 9358 6.264088 CGTATGTAGTTCCTAGTGAAACCTC 58.736 44.000 0.00 0.00 37.80 3.85
7083 9359 5.126707 CCGTATGTAGTTCCTAGTGAAACCT 59.873 44.000 0.00 0.00 37.80 3.50
7084 9360 5.126061 TCCGTATGTAGTTCCTAGTGAAACC 59.874 44.000 0.00 0.00 37.80 3.27
7085 9361 6.199937 TCCGTATGTAGTTCCTAGTGAAAC 57.800 41.667 0.00 0.00 33.94 2.78
7086 9362 6.379133 ACATCCGTATGTAGTTCCTAGTGAAA 59.621 38.462 0.00 0.00 44.66 2.69
7087 9363 5.889853 ACATCCGTATGTAGTTCCTAGTGAA 59.110 40.000 0.00 0.00 44.66 3.18
7088 9364 5.443283 ACATCCGTATGTAGTTCCTAGTGA 58.557 41.667 0.00 0.00 44.66 3.41
7089 9365 5.769484 ACATCCGTATGTAGTTCCTAGTG 57.231 43.478 0.00 0.00 44.66 2.74
7125 9401 9.507329 AGCAAAATGAGTGAATCTAAACTCTAA 57.493 29.630 4.62 0.00 42.72 2.10
7126 9402 9.155975 GAGCAAAATGAGTGAATCTAAACTCTA 57.844 33.333 4.62 0.00 42.72 2.43
7127 9403 7.120432 GGAGCAAAATGAGTGAATCTAAACTCT 59.880 37.037 4.62 0.00 42.72 3.24
7128 9404 7.247019 GGAGCAAAATGAGTGAATCTAAACTC 58.753 38.462 0.00 0.00 42.61 3.01
7129 9405 6.128172 CGGAGCAAAATGAGTGAATCTAAACT 60.128 38.462 0.00 0.00 0.00 2.66
7130 9406 6.024049 CGGAGCAAAATGAGTGAATCTAAAC 58.976 40.000 0.00 0.00 0.00 2.01
7131 9407 5.705441 ACGGAGCAAAATGAGTGAATCTAAA 59.295 36.000 0.00 0.00 0.00 1.85
7132 9408 5.245531 ACGGAGCAAAATGAGTGAATCTAA 58.754 37.500 0.00 0.00 0.00 2.10
7133 9409 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
7134 9410 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
7135 9411 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
7136 9412 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
7137 9413 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
7138 9414 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
7139 9415 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
7140 9416 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
7141 9417 5.109210 TGACTACATACGGAGCAAAATGAG 58.891 41.667 0.00 0.00 0.00 2.90
7142 9418 5.079689 TGACTACATACGGAGCAAAATGA 57.920 39.130 0.00 0.00 0.00 2.57
7143 9419 5.755375 AGATGACTACATACGGAGCAAAATG 59.245 40.000 0.00 0.00 36.82 2.32
7144 9420 5.918608 AGATGACTACATACGGAGCAAAAT 58.081 37.500 0.00 0.00 36.82 1.82
7145 9421 5.339008 AGATGACTACATACGGAGCAAAA 57.661 39.130 0.00 0.00 36.82 2.44
7146 9422 5.593095 ACTAGATGACTACATACGGAGCAAA 59.407 40.000 0.00 0.00 36.82 3.68
7147 9423 5.008712 CACTAGATGACTACATACGGAGCAA 59.991 44.000 0.00 0.00 36.82 3.91
7148 9424 4.515567 CACTAGATGACTACATACGGAGCA 59.484 45.833 0.00 0.00 36.82 4.26
7149 9425 4.755629 TCACTAGATGACTACATACGGAGC 59.244 45.833 0.00 0.00 36.82 4.70
7150 9426 6.862711 TTCACTAGATGACTACATACGGAG 57.137 41.667 0.00 0.00 36.92 4.63
7151 9427 7.284716 ACATTTCACTAGATGACTACATACGGA 59.715 37.037 0.00 0.00 36.92 4.69
7152 9428 7.426410 ACATTTCACTAGATGACTACATACGG 58.574 38.462 0.00 0.00 36.92 4.02
7153 9429 8.346300 AGACATTTCACTAGATGACTACATACG 58.654 37.037 0.00 0.00 36.92 3.06
7181 9457 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
7182 9458 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
7183 9459 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
7184 9460 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
7185 9461 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
7186 9462 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
7187 9463 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
7188 9464 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
7189 9465 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
7191 9467 8.759782 CATAATACTCCCTCCGTTCCTAAATAT 58.240 37.037 0.00 0.00 0.00 1.28
7192 9468 7.179694 CCATAATACTCCCTCCGTTCCTAAATA 59.820 40.741 0.00 0.00 0.00 1.40
7193 9469 6.013639 CCATAATACTCCCTCCGTTCCTAAAT 60.014 42.308 0.00 0.00 0.00 1.40
7194 9470 5.306160 CCATAATACTCCCTCCGTTCCTAAA 59.694 44.000 0.00 0.00 0.00 1.85
7195 9471 4.836736 CCATAATACTCCCTCCGTTCCTAA 59.163 45.833 0.00 0.00 0.00 2.69
7196 9472 4.106825 TCCATAATACTCCCTCCGTTCCTA 59.893 45.833 0.00 0.00 0.00 2.94
7197 9473 3.116862 TCCATAATACTCCCTCCGTTCCT 60.117 47.826 0.00 0.00 0.00 3.36
7198 9474 3.236896 TCCATAATACTCCCTCCGTTCC 58.763 50.000 0.00 0.00 0.00 3.62
7199 9475 4.950205 TTCCATAATACTCCCTCCGTTC 57.050 45.455 0.00 0.00 0.00 3.95
7200 9476 4.720273 AGTTTCCATAATACTCCCTCCGTT 59.280 41.667 0.00 0.00 0.00 4.44
7201 9477 4.101119 CAGTTTCCATAATACTCCCTCCGT 59.899 45.833 0.00 0.00 0.00 4.69
7202 9478 4.503296 CCAGTTTCCATAATACTCCCTCCG 60.503 50.000 0.00 0.00 0.00 4.63
7203 9479 4.412528 ACCAGTTTCCATAATACTCCCTCC 59.587 45.833 0.00 0.00 0.00 4.30
7204 9480 5.632034 ACCAGTTTCCATAATACTCCCTC 57.368 43.478 0.00 0.00 0.00 4.30
7205 9481 7.184022 ACTTTACCAGTTTCCATAATACTCCCT 59.816 37.037 0.00 0.00 27.32 4.20
7206 9482 7.282450 CACTTTACCAGTTTCCATAATACTCCC 59.718 40.741 0.00 0.00 30.92 4.30
7207 9483 7.827729 ACACTTTACCAGTTTCCATAATACTCC 59.172 37.037 0.00 0.00 30.92 3.85
7208 9484 8.788325 ACACTTTACCAGTTTCCATAATACTC 57.212 34.615 0.00 0.00 30.92 2.59
7225 9501 5.840940 ATTGCTTCACTCGTACACTTTAC 57.159 39.130 0.00 0.00 0.00 2.01
7227 9503 7.979537 TCATATATTGCTTCACTCGTACACTTT 59.020 33.333 0.00 0.00 0.00 2.66
7249 9525 4.142403 GCTACAAATTGCAGCCTTGTCATA 60.142 41.667 6.94 0.00 30.64 2.15
7402 9684 7.361201 CGGTTCAAGAATGTTCTCATAACATGT 60.361 37.037 4.27 0.00 40.43 3.21
7420 9704 1.878953 ACTAGGCAACACGGTTCAAG 58.121 50.000 0.00 0.00 41.41 3.02
7460 9744 5.943416 CCCACAACCTGATGTAGTTATTTCA 59.057 40.000 0.00 0.00 30.84 2.69
7500 9784 3.146066 GTGAAAACAGTACCAGGCATCA 58.854 45.455 0.00 0.00 0.00 3.07
7543 9834 1.227556 GTCACCTGCAGTTCACGGT 60.228 57.895 13.81 0.00 0.00 4.83
7545 9836 2.078849 TATGTCACCTGCAGTTCACG 57.921 50.000 13.81 0.00 0.00 4.35
7546 9837 3.426695 GCAATATGTCACCTGCAGTTCAC 60.427 47.826 13.81 6.11 34.87 3.18
7586 9879 2.086869 GCTTGTGTGTCATACTGGCAT 58.913 47.619 1.16 0.00 33.03 4.40
7592 9885 2.947852 ACGAGAGCTTGTGTGTCATAC 58.052 47.619 0.00 0.00 0.00 2.39
7670 9963 4.446385 ACATTCGTCAAATCGTCGAGAAAA 59.554 37.500 0.00 0.00 36.54 2.29
7679 9972 2.478514 TGGTGACACATTCGTCAAATCG 59.521 45.455 8.08 0.00 46.99 3.34
7729 10022 1.004044 ACAGCTCTTGACATTCAGGGG 59.996 52.381 0.00 0.00 0.00 4.79
7734 10027 5.444122 GTGTTACAACAGCTCTTGACATTC 58.556 41.667 8.85 0.00 40.05 2.67
7783 10077 4.453136 TGCATAAACGTACAAGAACCCTTC 59.547 41.667 0.00 0.00 0.00 3.46
7858 10152 6.899089 TCCCATCTTAAGCTTCATTCACATA 58.101 36.000 0.00 0.00 0.00 2.29
7913 10207 4.935205 AGCACGCAACATTAGTATCAGAAA 59.065 37.500 0.00 0.00 0.00 2.52
7932 10226 8.269424 CGTTGTATAGTTCAATCTCATAAGCAC 58.731 37.037 0.00 0.00 0.00 4.40
7954 10248 2.437200 TACTTGAACCCGTACCGTTG 57.563 50.000 0.00 0.00 0.00 4.10
7955 10249 2.102252 TGTTACTTGAACCCGTACCGTT 59.898 45.455 0.00 0.00 37.22 4.44
7956 10250 1.686052 TGTTACTTGAACCCGTACCGT 59.314 47.619 0.00 0.00 37.22 4.83
7957 10251 2.437200 TGTTACTTGAACCCGTACCG 57.563 50.000 0.00 0.00 37.22 4.02
7958 10252 5.694231 AATTTGTTACTTGAACCCGTACC 57.306 39.130 0.00 0.00 37.22 3.34
7959 10253 8.934825 TGTATAATTTGTTACTTGAACCCGTAC 58.065 33.333 0.00 0.00 37.22 3.67
7960 10254 9.499479 TTGTATAATTTGTTACTTGAACCCGTA 57.501 29.630 0.00 0.00 37.22 4.02
7961 10255 7.982761 TGTATAATTTGTTACTTGAACCCGT 57.017 32.000 0.00 0.00 37.22 5.28
7962 10256 9.284594 CATTGTATAATTTGTTACTTGAACCCG 57.715 33.333 0.00 0.00 37.22 5.28
7963 10257 9.083080 GCATTGTATAATTTGTTACTTGAACCC 57.917 33.333 0.00 0.00 37.22 4.11
7964 10258 9.083080 GGCATTGTATAATTTGTTACTTGAACC 57.917 33.333 0.00 0.00 37.22 3.62
7965 10259 9.632807 TGGCATTGTATAATTTGTTACTTGAAC 57.367 29.630 0.00 0.00 38.65 3.18
7974 10268 5.611128 TGGCATGGCATTGTATAATTTGT 57.389 34.783 19.43 0.00 0.00 2.83
8039 10335 8.122952 CACGAACATATTCTAACATTTCCTTCC 58.877 37.037 0.00 0.00 32.12 3.46
8062 10358 5.406780 AGAGCAGAAAACTCATCTAAACACG 59.593 40.000 0.00 0.00 36.58 4.49
8069 10365 4.530161 ACCTACAGAGCAGAAAACTCATCT 59.470 41.667 0.00 0.00 36.58 2.90
8083 10379 7.510549 TGGAATCTTTTTGAAACCTACAGAG 57.489 36.000 0.00 0.00 0.00 3.35
8182 10478 2.686118 GCCTTGCCTTGGAGAATGAGAT 60.686 50.000 0.00 0.00 0.00 2.75
8256 10552 1.860484 GCTTTGTGGAGCTGGCAGAC 61.860 60.000 20.86 11.09 39.57 3.51
8282 10580 1.630148 GGTGTCACTCGAGCATGTAC 58.370 55.000 13.61 8.20 0.00 2.90
8315 10613 1.085893 CGTGGCTCATGTGCACATAA 58.914 50.000 30.92 17.72 34.26 1.90
8335 10633 5.216918 GATCAGTGATCAGCATTCAGCAGT 61.217 45.833 25.19 0.00 39.85 4.40
8337 10635 3.203716 GATCAGTGATCAGCATTCAGCA 58.796 45.455 25.19 0.00 39.85 4.41
8340 10638 4.500375 CGTAGGATCAGTGATCAGCATTCA 60.500 45.833 29.56 7.65 40.50 2.57
8374 10672 2.009774 TGGCTAGAAAGAATTCGCTGC 58.990 47.619 0.00 6.03 40.63 5.25
8375 10673 3.873361 TCATGGCTAGAAAGAATTCGCTG 59.127 43.478 0.00 0.00 40.63 5.18
8387 10685 0.752658 CCGTGGTGATCATGGCTAGA 59.247 55.000 0.00 0.00 44.70 2.43
8398 10696 4.386951 CATGGTCGGCCGTGGTGA 62.387 66.667 27.15 1.01 45.72 4.02
8409 10707 2.592861 GATGGGAGCGGCATGGTC 60.593 66.667 1.45 0.00 44.49 4.02
8422 10720 2.281345 GGATGGCTCCAGCGATGG 60.281 66.667 15.12 15.12 39.59 3.51
8453 10751 2.208431 GCGGTGGAGAAGAAGATGATG 58.792 52.381 0.00 0.00 0.00 3.07
8473 10771 4.760047 CGGGGTCGGAGTTGCAGG 62.760 72.222 0.00 0.00 0.00 4.85
8489 10787 0.393267 AGAAGTCGAGGAGGAGGTCG 60.393 60.000 0.00 0.00 37.54 4.79
8499 10797 2.226896 CGGCGATGCAGAAGTCGAG 61.227 63.158 11.43 1.00 40.11 4.04
8506 10804 3.743636 TCGTGTCGGCGATGCAGA 61.744 61.111 14.79 8.05 35.83 4.26
8632 10933 2.317609 TTGAAGCCGAAGAGCGTGC 61.318 57.895 0.00 0.00 38.67 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.