Multiple sequence alignment - TraesCS4D01G292600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G292600 chr4D 100.000 3367 0 0 1 3367 463678980 463675614 0.000000e+00 6218
1 TraesCS4D01G292600 chr4D 94.118 935 45 2 939 1873 463467196 463466272 0.000000e+00 1413
2 TraesCS4D01G292600 chr4D 84.880 873 72 21 2486 3301 440794088 440794957 0.000000e+00 826
3 TraesCS4D01G292600 chr4D 87.424 493 52 6 1911 2402 463466156 463465673 2.930000e-155 558
4 TraesCS4D01G292600 chr4D 79.206 856 128 32 2488 3301 477284639 477283792 1.770000e-152 549
5 TraesCS4D01G292600 chr4A 91.363 1563 101 12 939 2481 6016453 6018001 0.000000e+00 2108
6 TraesCS4D01G292600 chr4A 78.495 558 102 13 1004 1549 6009452 6010003 1.920000e-92 350
7 TraesCS4D01G292600 chr4A 97.183 71 1 1 3297 3367 232639094 232639025 5.900000e-23 119
8 TraesCS4D01G292600 chr4B 91.043 1563 103 17 939 2481 579408987 579407442 0.000000e+00 2076
9 TraesCS4D01G292600 chr4B 78.292 562 102 15 1049 1600 579433705 579433154 8.940000e-91 344
10 TraesCS4D01G292600 chr2D 85.210 879 69 29 2485 3307 449778654 449779527 0.000000e+00 846
11 TraesCS4D01G292600 chr2D 85.287 836 68 24 2486 3273 157972247 157973075 0.000000e+00 811
12 TraesCS4D01G292600 chr2D 84.705 863 77 22 2486 3301 480816624 480817478 0.000000e+00 811
13 TraesCS4D01G292600 chr2D 84.072 835 78 23 2517 3301 274809359 274808530 0.000000e+00 754
14 TraesCS4D01G292600 chr2D 85.754 723 79 10 2 704 110022014 110022732 0.000000e+00 743
15 TraesCS4D01G292600 chr2D 86.130 584 43 16 2751 3301 100309049 100308471 2.240000e-166 595
16 TraesCS4D01G292600 chr1D 85.294 850 83 23 2486 3295 70866201 70867048 0.000000e+00 839
17 TraesCS4D01G292600 chr1D 84.284 859 84 21 2486 3299 400769241 400770093 0.000000e+00 791
18 TraesCS4D01G292600 chr1D 82.034 757 103 21 2574 3301 324964109 324964861 6.170000e-172 614
19 TraesCS4D01G292600 chr1D 79.548 841 123 34 2485 3287 103550970 103551799 3.800000e-154 555
20 TraesCS4D01G292600 chr1D 98.507 67 1 0 3301 3367 281474819 281474753 5.900000e-23 119
21 TraesCS4D01G292600 chr1D 98.507 67 1 0 3301 3367 346109889 346109955 5.900000e-23 119
22 TraesCS4D01G292600 chr7D 84.877 853 89 18 2486 3301 143929910 143929061 0.000000e+00 824
23 TraesCS4D01G292600 chr7D 85.598 736 76 11 2 715 135440514 135439787 0.000000e+00 745
24 TraesCS4D01G292600 chr7D 86.765 272 28 4 2488 2753 361083334 361083065 2.540000e-76 296
25 TraesCS4D01G292600 chr2B 84.404 872 82 25 2486 3314 438923702 438922842 0.000000e+00 808
26 TraesCS4D01G292600 chr2B 80.888 811 101 20 2519 3301 593621548 593620764 1.040000e-164 590
27 TraesCS4D01G292600 chr2B 80.365 713 92 24 2 692 480072752 480072066 6.490000e-137 497
28 TraesCS4D01G292600 chr2B 98.571 70 1 0 3298 3367 206354208 206354277 1.270000e-24 124
29 TraesCS4D01G292600 chr5D 84.455 862 77 22 2486 3295 456551571 456550715 0.000000e+00 797
30 TraesCS4D01G292600 chr6D 86.085 733 76 8 2 713 431451229 431450502 0.000000e+00 765
31 TraesCS4D01G292600 chr6D 85.310 742 80 12 2 722 311897888 311898621 0.000000e+00 739
32 TraesCS4D01G292600 chr1B 85.812 733 81 12 1 713 685177621 685178350 0.000000e+00 756
33 TraesCS4D01G292600 chr1B 80.809 766 101 28 2517 3241 58775665 58776425 2.930000e-155 558
34 TraesCS4D01G292600 chr1B 93.506 77 5 0 3290 3366 648282736 648282812 7.630000e-22 115
35 TraesCS4D01G292600 chrUn 83.295 862 92 22 2488 3301 112188942 112188085 0.000000e+00 747
36 TraesCS4D01G292600 chr3A 85.912 724 75 10 2 703 520447302 520446584 0.000000e+00 747
37 TraesCS4D01G292600 chr3A 81.505 784 111 23 2512 3267 741029891 741029114 6.170000e-172 614
38 TraesCS4D01G292600 chr3A 80.311 772 95 31 2488 3213 203741522 203740762 6.400000e-147 531
39 TraesCS4D01G292600 chr3A 78.353 850 118 40 2485 3289 155822973 155823801 1.090000e-134 490
40 TraesCS4D01G292600 chr2A 83.084 869 94 24 2486 3311 686318540 686319398 0.000000e+00 741
41 TraesCS4D01G292600 chr7B 83.198 863 87 27 2486 3301 339432158 339431307 0.000000e+00 737
42 TraesCS4D01G292600 chr7B 80.674 771 98 23 2573 3301 222972353 222971592 4.910000e-153 551
43 TraesCS4D01G292600 chr7B 85.553 443 42 10 2 426 27613308 27612870 8.570000e-121 444
44 TraesCS4D01G292600 chr3B 82.887 859 101 29 2486 3301 650077416 650078271 0.000000e+00 730
45 TraesCS4D01G292600 chr3D 85.359 724 78 13 2 703 400750470 400749753 0.000000e+00 725
46 TraesCS4D01G292600 chr3D 85.196 716 76 19 2 693 5389530 5388821 0.000000e+00 708
47 TraesCS4D01G292600 chr3D 84.511 736 85 11 2 716 572657915 572658642 0.000000e+00 701
48 TraesCS4D01G292600 chr3D 80.207 869 97 31 2486 3299 381971969 381971121 1.740000e-162 582
49 TraesCS4D01G292600 chr3D 80.240 835 109 30 2512 3301 454190774 454189951 8.100000e-161 577
50 TraesCS4D01G292600 chr6B 82.373 868 95 25 2486 3301 485316838 485317699 0.000000e+00 702
51 TraesCS4D01G292600 chr6B 83.151 730 90 16 21 726 52084086 52084806 1.320000e-178 636
52 TraesCS4D01G292600 chr6B 78.220 854 127 33 2485 3287 695605512 695606357 3.020000e-135 492
53 TraesCS4D01G292600 chr6B 85.135 444 54 5 2573 3005 128593875 128594317 8.570000e-121 444
54 TraesCS4D01G292600 chr6B 98.529 68 1 0 3300 3367 565174699 565174632 1.640000e-23 121
55 TraesCS4D01G292600 chr6B 95.833 72 3 0 3296 3367 132507200 132507271 2.120000e-22 117
56 TraesCS4D01G292600 chr5A 82.796 837 81 27 2486 3269 347398886 347399712 0.000000e+00 689
57 TraesCS4D01G292600 chr5A 82.030 729 110 14 3 713 622761917 622762642 4.810000e-168 601
58 TraesCS4D01G292600 chr6A 80.884 837 106 21 2517 3301 196843052 196842218 7.990000e-171 610
59 TraesCS4D01G292600 chr6A 82.249 738 83 22 2573 3267 197034505 197035237 8.040000e-166 593
60 TraesCS4D01G292600 chr7A 82.764 673 69 21 2694 3325 364270606 364269940 1.060000e-154 556
61 TraesCS4D01G292600 chr1A 80.103 774 105 23 2512 3241 341312831 341313599 6.400000e-147 531
62 TraesCS4D01G292600 chr1A 90.000 130 11 1 2 129 546796063 546795934 2.080000e-37 167
63 TraesCS4D01G292600 chr5B 79.925 533 70 27 2490 3012 8903764 8903259 1.150000e-94 357
64 TraesCS4D01G292600 chr5B 86.770 257 19 5 2 245 559173551 559173297 4.280000e-69 272
65 TraesCS4D01G292600 chr5B 97.260 73 1 1 3296 3367 652560505 652560433 4.560000e-24 122
66 TraesCS4D01G292600 chr5B 98.529 68 1 0 3300 3367 496542734 496542667 1.640000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G292600 chr4D 463675614 463678980 3366 True 6218.0 6218 100.000 1 3367 1 chr4D.!!$R1 3366
1 TraesCS4D01G292600 chr4D 463465673 463467196 1523 True 985.5 1413 90.771 939 2402 2 chr4D.!!$R3 1463
2 TraesCS4D01G292600 chr4D 440794088 440794957 869 False 826.0 826 84.880 2486 3301 1 chr4D.!!$F1 815
3 TraesCS4D01G292600 chr4D 477283792 477284639 847 True 549.0 549 79.206 2488 3301 1 chr4D.!!$R2 813
4 TraesCS4D01G292600 chr4A 6016453 6018001 1548 False 2108.0 2108 91.363 939 2481 1 chr4A.!!$F2 1542
5 TraesCS4D01G292600 chr4A 6009452 6010003 551 False 350.0 350 78.495 1004 1549 1 chr4A.!!$F1 545
6 TraesCS4D01G292600 chr4B 579407442 579408987 1545 True 2076.0 2076 91.043 939 2481 1 chr4B.!!$R1 1542
7 TraesCS4D01G292600 chr4B 579433154 579433705 551 True 344.0 344 78.292 1049 1600 1 chr4B.!!$R2 551
8 TraesCS4D01G292600 chr2D 449778654 449779527 873 False 846.0 846 85.210 2485 3307 1 chr2D.!!$F3 822
9 TraesCS4D01G292600 chr2D 157972247 157973075 828 False 811.0 811 85.287 2486 3273 1 chr2D.!!$F2 787
10 TraesCS4D01G292600 chr2D 480816624 480817478 854 False 811.0 811 84.705 2486 3301 1 chr2D.!!$F4 815
11 TraesCS4D01G292600 chr2D 274808530 274809359 829 True 754.0 754 84.072 2517 3301 1 chr2D.!!$R2 784
12 TraesCS4D01G292600 chr2D 110022014 110022732 718 False 743.0 743 85.754 2 704 1 chr2D.!!$F1 702
13 TraesCS4D01G292600 chr2D 100308471 100309049 578 True 595.0 595 86.130 2751 3301 1 chr2D.!!$R1 550
14 TraesCS4D01G292600 chr1D 70866201 70867048 847 False 839.0 839 85.294 2486 3295 1 chr1D.!!$F1 809
15 TraesCS4D01G292600 chr1D 400769241 400770093 852 False 791.0 791 84.284 2486 3299 1 chr1D.!!$F5 813
16 TraesCS4D01G292600 chr1D 324964109 324964861 752 False 614.0 614 82.034 2574 3301 1 chr1D.!!$F3 727
17 TraesCS4D01G292600 chr1D 103550970 103551799 829 False 555.0 555 79.548 2485 3287 1 chr1D.!!$F2 802
18 TraesCS4D01G292600 chr7D 143929061 143929910 849 True 824.0 824 84.877 2486 3301 1 chr7D.!!$R2 815
19 TraesCS4D01G292600 chr7D 135439787 135440514 727 True 745.0 745 85.598 2 715 1 chr7D.!!$R1 713
20 TraesCS4D01G292600 chr2B 438922842 438923702 860 True 808.0 808 84.404 2486 3314 1 chr2B.!!$R1 828
21 TraesCS4D01G292600 chr2B 593620764 593621548 784 True 590.0 590 80.888 2519 3301 1 chr2B.!!$R3 782
22 TraesCS4D01G292600 chr2B 480072066 480072752 686 True 497.0 497 80.365 2 692 1 chr2B.!!$R2 690
23 TraesCS4D01G292600 chr5D 456550715 456551571 856 True 797.0 797 84.455 2486 3295 1 chr5D.!!$R1 809
24 TraesCS4D01G292600 chr6D 431450502 431451229 727 True 765.0 765 86.085 2 713 1 chr6D.!!$R1 711
25 TraesCS4D01G292600 chr6D 311897888 311898621 733 False 739.0 739 85.310 2 722 1 chr6D.!!$F1 720
26 TraesCS4D01G292600 chr1B 685177621 685178350 729 False 756.0 756 85.812 1 713 1 chr1B.!!$F3 712
27 TraesCS4D01G292600 chr1B 58775665 58776425 760 False 558.0 558 80.809 2517 3241 1 chr1B.!!$F1 724
28 TraesCS4D01G292600 chrUn 112188085 112188942 857 True 747.0 747 83.295 2488 3301 1 chrUn.!!$R1 813
29 TraesCS4D01G292600 chr3A 520446584 520447302 718 True 747.0 747 85.912 2 703 1 chr3A.!!$R2 701
30 TraesCS4D01G292600 chr3A 741029114 741029891 777 True 614.0 614 81.505 2512 3267 1 chr3A.!!$R3 755
31 TraesCS4D01G292600 chr3A 203740762 203741522 760 True 531.0 531 80.311 2488 3213 1 chr3A.!!$R1 725
32 TraesCS4D01G292600 chr3A 155822973 155823801 828 False 490.0 490 78.353 2485 3289 1 chr3A.!!$F1 804
33 TraesCS4D01G292600 chr2A 686318540 686319398 858 False 741.0 741 83.084 2486 3311 1 chr2A.!!$F1 825
34 TraesCS4D01G292600 chr7B 339431307 339432158 851 True 737.0 737 83.198 2486 3301 1 chr7B.!!$R3 815
35 TraesCS4D01G292600 chr7B 222971592 222972353 761 True 551.0 551 80.674 2573 3301 1 chr7B.!!$R2 728
36 TraesCS4D01G292600 chr3B 650077416 650078271 855 False 730.0 730 82.887 2486 3301 1 chr3B.!!$F1 815
37 TraesCS4D01G292600 chr3D 400749753 400750470 717 True 725.0 725 85.359 2 703 1 chr3D.!!$R3 701
38 TraesCS4D01G292600 chr3D 5388821 5389530 709 True 708.0 708 85.196 2 693 1 chr3D.!!$R1 691
39 TraesCS4D01G292600 chr3D 572657915 572658642 727 False 701.0 701 84.511 2 716 1 chr3D.!!$F1 714
40 TraesCS4D01G292600 chr3D 381971121 381971969 848 True 582.0 582 80.207 2486 3299 1 chr3D.!!$R2 813
41 TraesCS4D01G292600 chr3D 454189951 454190774 823 True 577.0 577 80.240 2512 3301 1 chr3D.!!$R4 789
42 TraesCS4D01G292600 chr6B 485316838 485317699 861 False 702.0 702 82.373 2486 3301 1 chr6B.!!$F4 815
43 TraesCS4D01G292600 chr6B 52084086 52084806 720 False 636.0 636 83.151 21 726 1 chr6B.!!$F1 705
44 TraesCS4D01G292600 chr6B 695605512 695606357 845 False 492.0 492 78.220 2485 3287 1 chr6B.!!$F5 802
45 TraesCS4D01G292600 chr5A 347398886 347399712 826 False 689.0 689 82.796 2486 3269 1 chr5A.!!$F1 783
46 TraesCS4D01G292600 chr5A 622761917 622762642 725 False 601.0 601 82.030 3 713 1 chr5A.!!$F2 710
47 TraesCS4D01G292600 chr6A 196842218 196843052 834 True 610.0 610 80.884 2517 3301 1 chr6A.!!$R1 784
48 TraesCS4D01G292600 chr6A 197034505 197035237 732 False 593.0 593 82.249 2573 3267 1 chr6A.!!$F1 694
49 TraesCS4D01G292600 chr7A 364269940 364270606 666 True 556.0 556 82.764 2694 3325 1 chr7A.!!$R1 631
50 TraesCS4D01G292600 chr1A 341312831 341313599 768 False 531.0 531 80.103 2512 3241 1 chr1A.!!$F1 729
51 TraesCS4D01G292600 chr5B 8903259 8903764 505 True 357.0 357 79.925 2490 3012 1 chr5B.!!$R1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
836 870 0.03213 ACGTATGCCATAGCCGACAG 59.968 55.0 2.2 0.0 38.69 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2377 2526 0.461548 CTGGATTCAGGACTGCGCTA 59.538 55.0 9.73 0.0 37.36 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.925455 ACCACCATAGCAGCCACCT 60.925 57.895 0.00 0.00 0.00 4.00
35 41 4.016444 CCATAGCAGCCACCTAAAGAAAA 58.984 43.478 0.00 0.00 0.00 2.29
81 87 2.885113 CTCGACGTGGCTCCATCA 59.115 61.111 0.00 0.00 0.00 3.07
82 88 1.215382 CTCGACGTGGCTCCATCAA 59.785 57.895 0.00 0.00 0.00 2.57
186 208 1.821753 CGAACTCCAGATCTGACACCT 59.178 52.381 24.62 4.24 0.00 4.00
245 267 3.642778 ATCCACGAACCACGAGCCG 62.643 63.158 0.00 0.00 45.77 5.52
250 272 2.357034 GAACCACGAGCCGAGCAA 60.357 61.111 1.50 0.00 0.00 3.91
304 326 2.419990 CCACAATCTGCATCCGTTCCTA 60.420 50.000 0.00 0.00 0.00 2.94
305 327 3.470709 CACAATCTGCATCCGTTCCTAT 58.529 45.455 0.00 0.00 0.00 2.57
320 342 3.255634 TCCTATACTACCTCCCAAGCC 57.744 52.381 0.00 0.00 0.00 4.35
389 414 1.678970 GTCCACCACAAGGATGCCC 60.679 63.158 0.00 0.00 37.52 5.36
418 443 2.020720 ACAACATCACCGCTTGAACAA 58.979 42.857 0.00 0.00 37.92 2.83
430 455 2.031120 CTTGAACAAGCTGGTTCCCAA 58.969 47.619 27.51 17.18 45.12 4.12
438 463 0.811281 GCTGGTTCCCAAATCCTTCG 59.189 55.000 0.00 0.00 30.80 3.79
456 481 2.486918 TCGCCGACAATAGAGACGATA 58.513 47.619 0.00 0.00 0.00 2.92
480 505 3.585862 CTCACCGAAGAAGAATCCGAAA 58.414 45.455 0.00 0.00 0.00 3.46
536 561 2.202570 AAGGCGTCGAACGATCCG 60.203 61.111 10.82 1.77 46.05 4.18
550 575 3.332034 ACGATCCGAAACCCTAAACTTG 58.668 45.455 0.00 0.00 0.00 3.16
726 760 3.059188 GGAAGAAAAACGATCGCAGAACA 60.059 43.478 16.60 0.00 43.58 3.18
727 761 3.795561 AGAAAAACGATCGCAGAACAG 57.204 42.857 16.60 0.00 43.58 3.16
728 762 3.131396 AGAAAAACGATCGCAGAACAGT 58.869 40.909 16.60 0.00 43.58 3.55
729 763 4.304110 AGAAAAACGATCGCAGAACAGTA 58.696 39.130 16.60 0.00 43.58 2.74
730 764 4.929808 AGAAAAACGATCGCAGAACAGTAT 59.070 37.500 16.60 0.00 43.58 2.12
731 765 4.842139 AAAACGATCGCAGAACAGTATC 57.158 40.909 16.60 0.00 43.58 2.24
732 766 2.106750 ACGATCGCAGAACAGTATCG 57.893 50.000 16.60 0.00 43.58 2.92
733 767 1.400846 ACGATCGCAGAACAGTATCGT 59.599 47.619 16.60 0.00 45.53 3.73
734 768 2.037649 CGATCGCAGAACAGTATCGTC 58.962 52.381 0.26 0.00 43.58 4.20
735 769 2.037649 GATCGCAGAACAGTATCGTCG 58.962 52.381 0.00 0.00 43.58 5.12
736 770 0.800631 TCGCAGAACAGTATCGTCGT 59.199 50.000 0.00 0.00 0.00 4.34
737 771 1.198408 TCGCAGAACAGTATCGTCGTT 59.802 47.619 0.00 0.00 0.00 3.85
738 772 1.983605 CGCAGAACAGTATCGTCGTTT 59.016 47.619 0.00 0.00 0.00 3.60
739 773 3.120234 TCGCAGAACAGTATCGTCGTTTA 60.120 43.478 0.00 0.00 0.00 2.01
740 774 3.789756 CGCAGAACAGTATCGTCGTTTAT 59.210 43.478 0.00 0.00 0.00 1.40
741 775 4.965762 CGCAGAACAGTATCGTCGTTTATA 59.034 41.667 0.00 0.00 0.00 0.98
742 776 5.624081 CGCAGAACAGTATCGTCGTTTATAT 59.376 40.000 0.00 0.00 0.00 0.86
743 777 6.141844 CGCAGAACAGTATCGTCGTTTATATT 59.858 38.462 0.00 0.00 0.00 1.28
744 778 7.491683 GCAGAACAGTATCGTCGTTTATATTC 58.508 38.462 0.00 0.00 0.00 1.75
745 779 7.378995 GCAGAACAGTATCGTCGTTTATATTCT 59.621 37.037 0.00 0.00 0.00 2.40
746 780 8.682895 CAGAACAGTATCGTCGTTTATATTCTG 58.317 37.037 11.56 11.56 34.19 3.02
747 781 7.861372 AGAACAGTATCGTCGTTTATATTCTGG 59.139 37.037 0.00 0.00 0.00 3.86
748 782 7.268199 ACAGTATCGTCGTTTATATTCTGGA 57.732 36.000 0.00 0.00 0.00 3.86
749 783 7.361127 ACAGTATCGTCGTTTATATTCTGGAG 58.639 38.462 0.00 0.00 0.00 3.86
750 784 6.305877 CAGTATCGTCGTTTATATTCTGGAGC 59.694 42.308 0.00 0.00 0.00 4.70
751 785 4.642445 TCGTCGTTTATATTCTGGAGCA 57.358 40.909 0.00 0.00 0.00 4.26
752 786 4.357142 TCGTCGTTTATATTCTGGAGCAC 58.643 43.478 0.00 0.00 0.00 4.40
753 787 3.179795 CGTCGTTTATATTCTGGAGCACG 59.820 47.826 0.00 0.00 0.00 5.34
754 788 3.060473 GTCGTTTATATTCTGGAGCACGC 60.060 47.826 0.00 0.00 0.00 5.34
755 789 2.221055 CGTTTATATTCTGGAGCACGCC 59.779 50.000 0.00 0.00 0.00 5.68
756 790 2.543777 TTATATTCTGGAGCACGCCC 57.456 50.000 0.00 0.00 0.00 6.13
757 791 1.717032 TATATTCTGGAGCACGCCCT 58.283 50.000 0.00 0.00 0.00 5.19
758 792 1.717032 ATATTCTGGAGCACGCCCTA 58.283 50.000 0.00 0.00 0.00 3.53
759 793 1.040646 TATTCTGGAGCACGCCCTAG 58.959 55.000 0.00 0.00 0.00 3.02
760 794 2.317149 ATTCTGGAGCACGCCCTAGC 62.317 60.000 0.00 0.00 0.00 3.42
761 795 4.537433 CTGGAGCACGCCCTAGCC 62.537 72.222 0.00 0.00 34.57 3.93
763 797 3.866582 GGAGCACGCCCTAGCCAT 61.867 66.667 0.00 0.00 34.57 4.40
764 798 2.507854 GGAGCACGCCCTAGCCATA 61.508 63.158 0.00 0.00 34.57 2.74
765 799 1.301009 GAGCACGCCCTAGCCATAC 60.301 63.158 0.00 0.00 34.57 2.39
766 800 1.749334 GAGCACGCCCTAGCCATACT 61.749 60.000 0.00 0.00 34.57 2.12
767 801 1.146263 GCACGCCCTAGCCATACTT 59.854 57.895 0.00 0.00 34.57 2.24
768 802 1.160329 GCACGCCCTAGCCATACTTG 61.160 60.000 0.00 0.00 34.57 3.16
769 803 0.178068 CACGCCCTAGCCATACTTGT 59.822 55.000 0.00 0.00 34.57 3.16
770 804 1.411246 CACGCCCTAGCCATACTTGTA 59.589 52.381 0.00 0.00 34.57 2.41
771 805 1.411612 ACGCCCTAGCCATACTTGTAC 59.588 52.381 0.00 0.00 34.57 2.90
772 806 1.687123 CGCCCTAGCCATACTTGTACT 59.313 52.381 0.00 0.00 34.57 2.73
773 807 2.288273 CGCCCTAGCCATACTTGTACTC 60.288 54.545 0.00 0.00 34.57 2.59
774 808 2.288273 GCCCTAGCCATACTTGTACTCG 60.288 54.545 0.00 0.00 0.00 4.18
775 809 2.957006 CCCTAGCCATACTTGTACTCGT 59.043 50.000 0.00 0.00 0.00 4.18
776 810 4.139786 CCCTAGCCATACTTGTACTCGTA 58.860 47.826 0.00 0.00 0.00 3.43
777 811 4.765856 CCCTAGCCATACTTGTACTCGTAT 59.234 45.833 0.00 0.00 0.00 3.06
778 812 5.942236 CCCTAGCCATACTTGTACTCGTATA 59.058 44.000 7.13 0.00 0.00 1.47
779 813 6.128063 CCCTAGCCATACTTGTACTCGTATAC 60.128 46.154 7.13 0.00 0.00 1.47
780 814 6.429078 CCTAGCCATACTTGTACTCGTATACA 59.571 42.308 3.32 0.00 33.18 2.29
781 815 6.896021 AGCCATACTTGTACTCGTATACAT 57.104 37.500 3.32 0.00 35.04 2.29
782 816 7.991084 AGCCATACTTGTACTCGTATACATA 57.009 36.000 3.32 0.00 35.04 2.29
783 817 8.577048 AGCCATACTTGTACTCGTATACATAT 57.423 34.615 3.32 0.00 35.04 1.78
784 818 9.676861 AGCCATACTTGTACTCGTATACATATA 57.323 33.333 3.32 0.87 35.04 0.86
785 819 9.713740 GCCATACTTGTACTCGTATACATATAC 57.286 37.037 3.32 2.56 35.04 1.47
799 833 6.724893 ATACATATACGTATGCCATAGCCA 57.275 37.500 18.37 0.00 41.15 4.75
800 834 5.614324 ACATATACGTATGCCATAGCCAT 57.386 39.130 18.37 0.00 41.15 4.40
801 835 6.724893 ACATATACGTATGCCATAGCCATA 57.275 37.500 18.37 0.00 41.15 2.74
802 836 6.513180 ACATATACGTATGCCATAGCCATAC 58.487 40.000 18.37 0.00 41.15 2.39
803 837 6.323996 ACATATACGTATGCCATAGCCATACT 59.676 38.462 18.37 0.00 41.15 2.12
804 838 5.677319 ATACGTATGCCATAGCCATACTT 57.323 39.130 7.41 3.73 38.69 2.24
805 839 3.664107 ACGTATGCCATAGCCATACTTG 58.336 45.455 9.14 0.00 38.69 3.16
806 840 3.071023 ACGTATGCCATAGCCATACTTGT 59.929 43.478 9.14 0.21 38.69 3.16
807 841 4.282449 ACGTATGCCATAGCCATACTTGTA 59.718 41.667 9.14 0.00 38.69 2.41
808 842 4.625742 CGTATGCCATAGCCATACTTGTAC 59.374 45.833 9.14 0.00 38.69 2.90
809 843 3.485463 TGCCATAGCCATACTTGTACC 57.515 47.619 0.00 0.00 38.69 3.34
810 844 2.105821 TGCCATAGCCATACTTGTACCC 59.894 50.000 0.00 0.00 38.69 3.69
811 845 2.105821 GCCATAGCCATACTTGTACCCA 59.894 50.000 0.00 0.00 0.00 4.51
812 846 3.244911 GCCATAGCCATACTTGTACCCAT 60.245 47.826 0.00 0.00 0.00 4.00
813 847 4.019681 GCCATAGCCATACTTGTACCCATA 60.020 45.833 0.00 0.00 0.00 2.74
814 848 5.488341 CCATAGCCATACTTGTACCCATAC 58.512 45.833 0.00 0.00 0.00 2.39
815 849 5.012664 CCATAGCCATACTTGTACCCATACA 59.987 44.000 0.00 0.00 39.63 2.29
816 850 6.296432 CCATAGCCATACTTGTACCCATACAT 60.296 42.308 0.00 0.00 41.02 2.29
817 851 7.093068 CCATAGCCATACTTGTACCCATACATA 60.093 40.741 0.00 0.00 41.02 2.29
818 852 6.110411 AGCCATACTTGTACCCATACATAC 57.890 41.667 0.00 0.00 41.02 2.39
819 853 4.927425 GCCATACTTGTACCCATACATACG 59.073 45.833 0.00 0.00 41.02 3.06
820 854 5.510179 GCCATACTTGTACCCATACATACGT 60.510 44.000 0.00 0.00 41.02 3.57
821 855 6.294675 GCCATACTTGTACCCATACATACGTA 60.295 42.308 0.00 0.00 41.02 3.57
822 856 7.578189 GCCATACTTGTACCCATACATACGTAT 60.578 40.741 1.14 1.14 41.02 3.06
832 866 2.363788 ACATACGTATGCCATAGCCG 57.636 50.000 30.68 8.58 38.69 5.52
833 867 1.890489 ACATACGTATGCCATAGCCGA 59.110 47.619 30.68 0.00 38.69 5.54
834 868 2.259618 CATACGTATGCCATAGCCGAC 58.740 52.381 21.80 0.00 38.69 4.79
835 869 1.320507 TACGTATGCCATAGCCGACA 58.679 50.000 2.20 0.00 38.69 4.35
836 870 0.032130 ACGTATGCCATAGCCGACAG 59.968 55.000 2.20 0.00 38.69 3.51
837 871 0.313987 CGTATGCCATAGCCGACAGA 59.686 55.000 0.00 0.00 38.69 3.41
838 872 1.269569 CGTATGCCATAGCCGACAGAA 60.270 52.381 0.00 0.00 38.69 3.02
839 873 2.610479 CGTATGCCATAGCCGACAGAAT 60.610 50.000 0.00 0.00 38.69 2.40
840 874 2.645838 ATGCCATAGCCGACAGAATT 57.354 45.000 0.00 0.00 38.69 2.17
841 875 2.418368 TGCCATAGCCGACAGAATTT 57.582 45.000 0.00 0.00 38.69 1.82
842 876 2.016318 TGCCATAGCCGACAGAATTTG 58.984 47.619 0.00 0.00 38.69 2.32
843 877 1.268743 GCCATAGCCGACAGAATTTGC 60.269 52.381 0.00 0.00 0.00 3.68
844 878 2.292267 CCATAGCCGACAGAATTTGCT 58.708 47.619 0.00 0.00 36.11 3.91
845 879 2.684881 CCATAGCCGACAGAATTTGCTT 59.315 45.455 0.00 0.00 33.63 3.91
846 880 3.129287 CCATAGCCGACAGAATTTGCTTT 59.871 43.478 0.00 0.00 33.63 3.51
847 881 4.380867 CCATAGCCGACAGAATTTGCTTTT 60.381 41.667 0.00 0.00 33.63 2.27
848 882 3.017265 AGCCGACAGAATTTGCTTTTG 57.983 42.857 0.00 0.00 0.00 2.44
849 883 2.622942 AGCCGACAGAATTTGCTTTTGA 59.377 40.909 0.00 0.00 0.00 2.69
850 884 2.726241 GCCGACAGAATTTGCTTTTGAC 59.274 45.455 0.00 0.00 0.00 3.18
851 885 2.973224 CCGACAGAATTTGCTTTTGACG 59.027 45.455 0.00 0.00 37.05 4.35
852 886 2.401720 CGACAGAATTTGCTTTTGACGC 59.598 45.455 0.00 0.00 32.51 5.19
853 887 2.384382 ACAGAATTTGCTTTTGACGCG 58.616 42.857 3.53 3.53 0.00 6.01
854 888 2.223479 ACAGAATTTGCTTTTGACGCGT 60.223 40.909 13.85 13.85 0.00 6.01
855 889 2.401720 CAGAATTTGCTTTTGACGCGTC 59.598 45.455 31.66 31.66 0.00 5.19
856 890 1.378807 GAATTTGCTTTTGACGCGTCG 59.621 47.619 31.88 19.61 0.00 5.12
857 891 0.385473 ATTTGCTTTTGACGCGTCGG 60.385 50.000 31.88 21.92 0.00 4.79
858 892 1.707239 TTTGCTTTTGACGCGTCGGT 61.707 50.000 31.88 0.00 0.00 4.69
859 893 2.127758 GCTTTTGACGCGTCGGTG 60.128 61.111 31.88 22.02 0.00 4.94
860 894 2.127758 CTTTTGACGCGTCGGTGC 60.128 61.111 31.88 11.39 0.00 5.01
861 895 2.876879 CTTTTGACGCGTCGGTGCA 61.877 57.895 31.88 14.10 34.15 4.57
862 896 3.158011 TTTTGACGCGTCGGTGCAC 62.158 57.895 31.88 8.80 34.15 4.57
900 934 6.866179 CGTTCTATACGGCTATTTATCACC 57.134 41.667 0.00 0.00 46.42 4.02
901 935 5.803967 CGTTCTATACGGCTATTTATCACCC 59.196 44.000 0.00 0.00 46.42 4.61
902 936 6.570957 CGTTCTATACGGCTATTTATCACCCA 60.571 42.308 0.00 0.00 46.42 4.51
903 937 7.328737 GTTCTATACGGCTATTTATCACCCAT 58.671 38.462 0.00 0.00 0.00 4.00
904 938 7.108841 TCTATACGGCTATTTATCACCCATC 57.891 40.000 0.00 0.00 0.00 3.51
905 939 5.755409 ATACGGCTATTTATCACCCATCA 57.245 39.130 0.00 0.00 0.00 3.07
906 940 4.431416 ACGGCTATTTATCACCCATCAA 57.569 40.909 0.00 0.00 0.00 2.57
907 941 4.787551 ACGGCTATTTATCACCCATCAAA 58.212 39.130 0.00 0.00 0.00 2.69
908 942 5.385198 ACGGCTATTTATCACCCATCAAAT 58.615 37.500 0.00 0.00 0.00 2.32
909 943 5.833131 ACGGCTATTTATCACCCATCAAATT 59.167 36.000 0.00 0.00 0.00 1.82
910 944 6.016276 ACGGCTATTTATCACCCATCAAATTC 60.016 38.462 0.00 0.00 0.00 2.17
911 945 6.381801 GGCTATTTATCACCCATCAAATTCG 58.618 40.000 0.00 0.00 0.00 3.34
912 946 5.858581 GCTATTTATCACCCATCAAATTCGC 59.141 40.000 0.00 0.00 0.00 4.70
913 947 4.647424 TTTATCACCCATCAAATTCGCC 57.353 40.909 0.00 0.00 0.00 5.54
914 948 1.402787 ATCACCCATCAAATTCGCCC 58.597 50.000 0.00 0.00 0.00 6.13
915 949 1.029408 TCACCCATCAAATTCGCCCG 61.029 55.000 0.00 0.00 0.00 6.13
916 950 2.412937 CCCATCAAATTCGCCCGC 59.587 61.111 0.00 0.00 0.00 6.13
917 951 2.120909 CCCATCAAATTCGCCCGCT 61.121 57.895 0.00 0.00 0.00 5.52
918 952 1.666209 CCCATCAAATTCGCCCGCTT 61.666 55.000 0.00 0.00 0.00 4.68
919 953 0.173255 CCATCAAATTCGCCCGCTTT 59.827 50.000 0.00 0.00 0.00 3.51
920 954 1.548986 CATCAAATTCGCCCGCTTTC 58.451 50.000 0.00 0.00 0.00 2.62
921 955 1.133025 CATCAAATTCGCCCGCTTTCT 59.867 47.619 0.00 0.00 0.00 2.52
922 956 0.802494 TCAAATTCGCCCGCTTTCTC 59.198 50.000 0.00 0.00 0.00 2.87
923 957 0.521291 CAAATTCGCCCGCTTTCTCA 59.479 50.000 0.00 0.00 0.00 3.27
924 958 1.068610 CAAATTCGCCCGCTTTCTCAA 60.069 47.619 0.00 0.00 0.00 3.02
925 959 1.243902 AATTCGCCCGCTTTCTCAAA 58.756 45.000 0.00 0.00 0.00 2.69
926 960 1.243902 ATTCGCCCGCTTTCTCAAAA 58.756 45.000 0.00 0.00 0.00 2.44
927 961 1.025812 TTCGCCCGCTTTCTCAAAAA 58.974 45.000 0.00 0.00 0.00 1.94
1490 1542 0.904865 TCCAACTCCGACCTGCTCAT 60.905 55.000 0.00 0.00 0.00 2.90
1742 1794 3.697045 AGTACAGTACTGAGCAGTGATCC 59.303 47.826 29.30 0.00 42.52 3.36
1758 1810 4.217118 AGTGATCCTGTCAATTTGCAGAAC 59.783 41.667 17.09 11.52 38.90 3.01
1818 1870 1.120530 AGGCCATAACTGTAGGGACG 58.879 55.000 5.01 0.00 44.50 4.79
1823 1875 2.037251 CCATAACTGTAGGGACGGATGG 59.963 54.545 0.00 0.00 32.59 3.51
1858 1910 2.076863 CCTTGGAGCAGGTAAAACTCG 58.923 52.381 0.00 0.00 0.00 4.18
1866 1918 3.314357 AGCAGGTAAAACTCGGAACAAAC 59.686 43.478 0.00 0.00 0.00 2.93
1873 1925 5.890424 AAAACTCGGAACAAACTGAAGAA 57.110 34.783 0.00 0.00 0.00 2.52
1880 1940 3.064820 GGAACAAACTGAAGAAACGCAGA 59.935 43.478 0.00 0.00 36.07 4.26
1894 1954 9.100007 GAAGAAACGCAGACACACTGTATTCTT 62.100 40.741 17.20 17.20 45.43 2.52
1902 2028 6.585702 CAGACACACTGTATTCTTTCTCTGAG 59.414 42.308 0.00 0.00 41.30 3.35
1903 2029 5.233988 ACACACTGTATTCTTTCTCTGAGC 58.766 41.667 0.00 0.00 0.00 4.26
1904 2030 4.629200 CACACTGTATTCTTTCTCTGAGCC 59.371 45.833 0.00 0.00 0.00 4.70
1905 2031 4.530161 ACACTGTATTCTTTCTCTGAGCCT 59.470 41.667 0.00 0.00 0.00 4.58
1906 2032 4.869297 CACTGTATTCTTTCTCTGAGCCTG 59.131 45.833 0.00 0.00 0.00 4.85
1907 2033 4.530161 ACTGTATTCTTTCTCTGAGCCTGT 59.470 41.667 0.00 0.00 0.00 4.00
1908 2034 5.717178 ACTGTATTCTTTCTCTGAGCCTGTA 59.283 40.000 0.00 0.00 0.00 2.74
1909 2035 6.211584 ACTGTATTCTTTCTCTGAGCCTGTAA 59.788 38.462 0.00 0.00 0.00 2.41
1913 2043 9.771534 GTATTCTTTCTCTGAGCCTGTAATATT 57.228 33.333 0.00 0.00 0.00 1.28
1920 2050 7.851228 TCTCTGAGCCTGTAATATTTTTCAGA 58.149 34.615 0.00 11.55 37.92 3.27
1921 2051 8.140677 CTCTGAGCCTGTAATATTTTTCAGAG 57.859 38.462 12.15 12.15 46.05 3.35
1922 2052 6.540189 TCTGAGCCTGTAATATTTTTCAGAGC 59.460 38.462 13.07 13.34 36.02 4.09
1923 2053 5.590259 TGAGCCTGTAATATTTTTCAGAGCC 59.410 40.000 13.07 10.08 33.41 4.70
1924 2054 4.576463 AGCCTGTAATATTTTTCAGAGCCG 59.424 41.667 13.07 0.00 33.41 5.52
1925 2055 4.789802 GCCTGTAATATTTTTCAGAGCCGC 60.790 45.833 13.07 7.08 33.41 6.53
1926 2056 4.335315 CCTGTAATATTTTTCAGAGCCGCA 59.665 41.667 13.07 0.00 33.41 5.69
1927 2057 5.484173 TGTAATATTTTTCAGAGCCGCAG 57.516 39.130 0.00 0.00 0.00 5.18
1928 2058 3.427161 AATATTTTTCAGAGCCGCAGC 57.573 42.857 0.00 0.00 40.32 5.25
1929 2059 1.819928 TATTTTTCAGAGCCGCAGCA 58.180 45.000 0.00 0.00 43.56 4.41
1930 2060 0.961019 ATTTTTCAGAGCCGCAGCAA 59.039 45.000 0.00 0.00 43.56 3.91
1934 2075 1.100463 TTCAGAGCCGCAGCAAAACA 61.100 50.000 0.00 0.00 43.56 2.83
1938 2079 1.086696 GAGCCGCAGCAAAACATCTA 58.913 50.000 0.00 0.00 43.56 1.98
1943 2084 4.037690 GCCGCAGCAAAACATCTATTAAG 58.962 43.478 0.00 0.00 39.53 1.85
2094 2236 4.651503 AGTGACTTGAATGGTCGATCCTAT 59.348 41.667 0.00 0.00 36.58 2.57
2108 2250 4.580167 TCGATCCTATTTTTGCTCCATTGG 59.420 41.667 0.00 0.00 0.00 3.16
2167 2316 4.701765 TGCCACACTGTAATGCAAATTTT 58.298 34.783 0.00 0.00 0.00 1.82
2168 2317 4.510711 TGCCACACTGTAATGCAAATTTTG 59.489 37.500 4.72 4.72 0.00 2.44
2219 2368 2.547211 CTGCTAGTGTGCTTATGATGGC 59.453 50.000 0.00 0.00 0.00 4.40
2247 2396 2.768527 TGCTTAGGAGAGAATGTGAGGG 59.231 50.000 0.00 0.00 0.00 4.30
2253 2402 2.093235 GGAGAGAATGTGAGGGTGGAAG 60.093 54.545 0.00 0.00 0.00 3.46
2269 2418 3.003793 GTGGAAGTCTTCAAGGAAACTGC 59.996 47.826 14.49 0.00 42.68 4.40
2270 2419 3.214328 GGAAGTCTTCAAGGAAACTGCA 58.786 45.455 14.49 0.00 42.68 4.41
2339 2488 2.075338 GACTTCTTGCTTGCCTCTCAG 58.925 52.381 0.00 0.00 0.00 3.35
2346 2495 0.612744 GCTTGCCTCTCAGAAGTCCT 59.387 55.000 0.00 0.00 0.00 3.85
2355 2504 3.309296 TCTCAGAAGTCCTCAAACCAGT 58.691 45.455 0.00 0.00 0.00 4.00
2367 2516 5.053145 CCTCAAACCAGTATGATCAGTAGC 58.947 45.833 0.09 0.00 39.69 3.58
2377 2526 6.765036 CAGTATGATCAGTAGCTCAAATGGTT 59.235 38.462 0.09 0.00 39.69 3.67
2381 2530 3.521560 TCAGTAGCTCAAATGGTTAGCG 58.478 45.455 0.00 0.00 41.19 4.26
2383 2532 2.006888 GTAGCTCAAATGGTTAGCGCA 58.993 47.619 11.47 0.00 41.19 6.09
2418 2567 2.234908 AGTACCACAGAGCATTCCTGAC 59.765 50.000 0.00 0.00 35.69 3.51
2447 2596 3.153919 GTCCCCATACAAAGTTTGCAGA 58.846 45.455 15.59 1.87 0.00 4.26
2453 2602 6.147656 CCCCATACAAAGTTTGCAGAAATTTC 59.852 38.462 15.59 10.33 0.00 2.17
2456 2605 3.555547 ACAAAGTTTGCAGAAATTTCGCC 59.444 39.130 22.98 14.79 0.00 5.54
2475 2624 3.747529 CGCCATACATATGACAATGCTCA 59.252 43.478 10.38 0.00 35.75 4.26
2481 2630 7.859377 CCATACATATGACAATGCTCAAAGTTC 59.141 37.037 10.38 0.00 35.75 3.01
2482 2631 6.199937 ACATATGACAATGCTCAAAGTTCC 57.800 37.500 10.38 0.00 0.00 3.62
2483 2632 5.948162 ACATATGACAATGCTCAAAGTTCCT 59.052 36.000 10.38 0.00 0.00 3.36
2486 2635 3.565482 TGACAATGCTCAAAGTTCCTGAC 59.435 43.478 0.00 0.00 0.00 3.51
2748 2933 9.482627 GTTGATGTTAATTGGTTTATTTGGTGA 57.517 29.630 0.00 0.00 0.00 4.02
2834 3064 4.536765 ACTTTTGTTCTTGAGGACATGGT 58.463 39.130 0.00 0.00 0.00 3.55
3052 3327 4.585581 TGGATCCATTGTTTCATGCTATGG 59.414 41.667 11.44 6.11 39.46 2.74
3054 3329 5.069516 GGATCCATTGTTTCATGCTATGGTT 59.930 40.000 6.95 4.68 39.25 3.67
3055 3330 6.265196 GGATCCATTGTTTCATGCTATGGTTA 59.735 38.462 6.95 0.00 39.25 2.85
3118 3395 4.232091 GAGAGGGGGTAATCATAAGTGGA 58.768 47.826 0.00 0.00 0.00 4.02
3148 3426 6.065374 TGTTCAAGTAAGAATAGCACCCAAA 58.935 36.000 0.00 0.00 0.00 3.28
3157 3435 1.412453 TAGCACCCAAACACCGGTCT 61.412 55.000 2.59 0.00 0.00 3.85
3166 3444 3.343617 CAAACACCGGTCTATCCACATT 58.656 45.455 2.59 0.00 35.57 2.71
3244 3524 7.128077 AGATGAAATTCCCATGTGTCCTTAAT 58.872 34.615 0.00 0.00 0.00 1.40
3273 3553 7.413000 CGCTTTGCTTGCTATAAGAGAAAGTTA 60.413 37.037 0.00 0.00 42.40 2.24
3295 3575 7.709613 AGTTACGGCATGTCCTTTACTATAAAG 59.290 37.037 0.00 1.98 0.00 1.85
3301 3581 7.389053 GGCATGTCCTTTACTATAAAGAGGATG 59.611 40.741 9.42 8.55 38.65 3.51
3303 3583 9.838339 CATGTCCTTTACTATAAAGAGGATGTT 57.162 33.333 9.42 0.00 38.65 2.71
3305 3585 8.265055 TGTCCTTTACTATAAAGAGGATGTTGG 58.735 37.037 9.42 0.00 38.65 3.77
3306 3586 7.226918 GTCCTTTACTATAAAGAGGATGTTGGC 59.773 40.741 9.42 0.00 38.65 4.52
3309 3589 8.871629 TTTACTATAAAGAGGATGTTGGCAAA 57.128 30.769 0.00 0.00 0.00 3.68
3310 3590 6.759497 ACTATAAAGAGGATGTTGGCAAAC 57.241 37.500 0.00 0.00 36.78 2.93
3311 3591 4.701956 ATAAAGAGGATGTTGGCAAACG 57.298 40.909 0.00 0.00 39.30 3.60
3312 3592 1.981256 AAGAGGATGTTGGCAAACGT 58.019 45.000 0.00 0.00 39.30 3.99
3313 3593 2.851263 AGAGGATGTTGGCAAACGTA 57.149 45.000 0.00 0.00 39.30 3.57
3314 3594 2.699954 AGAGGATGTTGGCAAACGTAG 58.300 47.619 0.00 0.00 39.30 3.51
3315 3595 1.130561 GAGGATGTTGGCAAACGTAGC 59.869 52.381 0.00 4.45 39.30 3.58
3316 3596 0.878416 GGATGTTGGCAAACGTAGCA 59.122 50.000 13.92 0.00 39.30 3.49
3317 3597 1.472480 GGATGTTGGCAAACGTAGCAT 59.528 47.619 13.92 0.00 39.30 3.79
3318 3598 2.518949 GATGTTGGCAAACGTAGCATG 58.481 47.619 13.92 0.00 39.30 4.06
3319 3599 0.039617 TGTTGGCAAACGTAGCATGC 60.040 50.000 10.51 10.51 40.92 4.06
3320 3600 0.039617 GTTGGCAAACGTAGCATGCA 60.040 50.000 21.98 2.77 42.99 3.96
3321 3601 0.670706 TTGGCAAACGTAGCATGCAA 59.329 45.000 21.98 0.00 42.99 4.08
3322 3602 0.887247 TGGCAAACGTAGCATGCAAT 59.113 45.000 21.98 1.90 42.99 3.56
3323 3603 1.271934 TGGCAAACGTAGCATGCAATT 59.728 42.857 21.98 5.18 42.99 2.32
3324 3604 2.288702 TGGCAAACGTAGCATGCAATTT 60.289 40.909 21.98 11.17 42.99 1.82
3325 3605 2.345341 GGCAAACGTAGCATGCAATTTC 59.655 45.455 21.98 4.13 42.99 2.17
3326 3606 2.985809 GCAAACGTAGCATGCAATTTCA 59.014 40.909 21.98 0.00 41.23 2.69
3327 3607 3.428198 GCAAACGTAGCATGCAATTTCAA 59.572 39.130 21.98 0.00 41.23 2.69
3328 3608 4.084641 GCAAACGTAGCATGCAATTTCAAA 60.085 37.500 21.98 0.00 41.23 2.69
3329 3609 5.557893 GCAAACGTAGCATGCAATTTCAAAA 60.558 36.000 21.98 0.00 41.23 2.44
3330 3610 6.417327 CAAACGTAGCATGCAATTTCAAAAA 58.583 32.000 21.98 0.00 0.00 1.94
3350 3630 4.361451 AAAAATCCTACGCTCATGCAAG 57.639 40.909 0.00 0.00 39.64 4.01
3351 3631 2.988010 AATCCTACGCTCATGCAAGA 57.012 45.000 0.00 0.00 39.64 3.02
3352 3632 3.482156 AATCCTACGCTCATGCAAGAT 57.518 42.857 0.00 0.00 39.64 2.40
3353 3633 2.515926 TCCTACGCTCATGCAAGATC 57.484 50.000 0.00 0.00 39.64 2.75
3354 3634 2.034878 TCCTACGCTCATGCAAGATCT 58.965 47.619 0.00 0.00 39.64 2.75
3355 3635 3.222603 TCCTACGCTCATGCAAGATCTA 58.777 45.455 0.00 0.00 39.64 1.98
3356 3636 3.829026 TCCTACGCTCATGCAAGATCTAT 59.171 43.478 0.00 0.00 39.64 1.98
3357 3637 4.082517 TCCTACGCTCATGCAAGATCTATC 60.083 45.833 0.00 0.00 39.64 2.08
3358 3638 4.082300 CCTACGCTCATGCAAGATCTATCT 60.082 45.833 0.00 0.00 39.64 1.98
3359 3639 5.124617 CCTACGCTCATGCAAGATCTATCTA 59.875 44.000 0.00 0.00 39.64 1.98
3360 3640 5.058149 ACGCTCATGCAAGATCTATCTAG 57.942 43.478 0.00 0.00 39.64 2.43
3361 3641 4.082300 ACGCTCATGCAAGATCTATCTAGG 60.082 45.833 0.00 0.00 39.64 3.02
3362 3642 4.157472 CGCTCATGCAAGATCTATCTAGGA 59.843 45.833 0.00 0.00 39.64 2.94
3363 3643 5.653507 GCTCATGCAAGATCTATCTAGGAG 58.346 45.833 0.00 1.35 35.76 3.69
3364 3644 5.418524 GCTCATGCAAGATCTATCTAGGAGA 59.581 44.000 12.23 0.00 35.76 3.71
3365 3645 6.097270 GCTCATGCAAGATCTATCTAGGAGAT 59.903 42.308 12.23 7.55 37.67 2.75
3366 3646 7.407393 TCATGCAAGATCTATCTAGGAGATG 57.593 40.000 11.48 2.82 35.37 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 41 4.455877 GTGAGAAGGTGATCCGTCATTTTT 59.544 41.667 3.45 0.00 43.07 1.94
186 208 1.471287 CCGACGTCTTAGTCATGTGGA 59.529 52.381 14.70 0.00 40.98 4.02
245 267 3.896648 TGGAAGACGAAACATTTGCTC 57.103 42.857 0.00 0.00 0.00 4.26
250 272 4.274950 ACGACATTTGGAAGACGAAACATT 59.725 37.500 0.00 0.00 0.00 2.71
304 326 0.763223 CGGGGCTTGGGAGGTAGTAT 60.763 60.000 0.00 0.00 0.00 2.12
305 327 1.382146 CGGGGCTTGGGAGGTAGTA 60.382 63.158 0.00 0.00 0.00 1.82
364 389 1.214175 TCCTTGTGGTGGACATGTGTT 59.786 47.619 1.15 0.00 33.40 3.32
396 421 0.310543 TTCAAGCGGTGATGTTGTGC 59.689 50.000 0.00 0.00 35.70 4.57
430 455 2.693591 TCTCTATTGTCGGCGAAGGATT 59.306 45.455 12.92 0.00 0.00 3.01
438 463 2.586900 GCTATCGTCTCTATTGTCGGC 58.413 52.381 0.00 0.00 0.00 5.54
456 481 1.208293 GGATTCTTCTTCGGTGAGGCT 59.792 52.381 0.00 0.00 0.00 4.58
480 505 6.512415 GCAATAGCGATGCTGAATAAAGAAGT 60.512 38.462 0.70 0.00 40.10 3.01
536 561 2.036733 GGCCCAACAAGTTTAGGGTTTC 59.963 50.000 9.35 0.00 43.42 2.78
550 575 3.503365 ACTTTAGGTTTTAGGGCCCAAC 58.497 45.455 27.56 19.73 0.00 3.77
592 622 1.152419 TGGTGAGGAGGGTCGTTGA 60.152 57.895 0.00 0.00 0.00 3.18
594 624 2.214920 GGTGGTGAGGAGGGTCGTT 61.215 63.158 0.00 0.00 0.00 3.85
595 625 2.603776 GGTGGTGAGGAGGGTCGT 60.604 66.667 0.00 0.00 0.00 4.34
694 728 3.492011 TCGTTTTTCTTCCTGTAGCGAAC 59.508 43.478 0.00 0.00 0.00 3.95
726 760 6.016527 TGCTCCAGAATATAAACGACGATACT 60.017 38.462 0.00 0.00 0.00 2.12
727 761 6.087820 GTGCTCCAGAATATAAACGACGATAC 59.912 42.308 0.00 0.00 0.00 2.24
728 762 6.147581 GTGCTCCAGAATATAAACGACGATA 58.852 40.000 0.00 0.00 0.00 2.92
729 763 4.982916 GTGCTCCAGAATATAAACGACGAT 59.017 41.667 0.00 0.00 0.00 3.73
730 764 4.357142 GTGCTCCAGAATATAAACGACGA 58.643 43.478 0.00 0.00 0.00 4.20
731 765 3.179795 CGTGCTCCAGAATATAAACGACG 59.820 47.826 0.00 0.00 31.76 5.12
732 766 3.060473 GCGTGCTCCAGAATATAAACGAC 60.060 47.826 0.00 0.00 31.76 4.34
733 767 3.120792 GCGTGCTCCAGAATATAAACGA 58.879 45.455 0.00 0.00 31.76 3.85
734 768 2.221055 GGCGTGCTCCAGAATATAAACG 59.779 50.000 0.00 0.00 0.00 3.60
735 769 2.548480 GGGCGTGCTCCAGAATATAAAC 59.452 50.000 0.00 0.00 0.00 2.01
736 770 2.438021 AGGGCGTGCTCCAGAATATAAA 59.562 45.455 0.00 0.00 0.00 1.40
737 771 2.047061 AGGGCGTGCTCCAGAATATAA 58.953 47.619 0.00 0.00 0.00 0.98
738 772 1.717032 AGGGCGTGCTCCAGAATATA 58.283 50.000 0.00 0.00 0.00 0.86
739 773 1.620819 CTAGGGCGTGCTCCAGAATAT 59.379 52.381 0.00 0.00 0.00 1.28
740 774 1.040646 CTAGGGCGTGCTCCAGAATA 58.959 55.000 0.00 0.00 0.00 1.75
741 775 1.826024 CTAGGGCGTGCTCCAGAAT 59.174 57.895 0.00 0.00 0.00 2.40
742 776 3.019003 GCTAGGGCGTGCTCCAGAA 62.019 63.158 0.00 0.00 0.00 3.02
743 777 3.461773 GCTAGGGCGTGCTCCAGA 61.462 66.667 0.00 0.00 0.00 3.86
744 778 4.537433 GGCTAGGGCGTGCTCCAG 62.537 72.222 0.00 0.00 39.81 3.86
746 780 2.507854 TATGGCTAGGGCGTGCTCC 61.508 63.158 0.00 0.00 39.81 4.70
747 781 1.301009 GTATGGCTAGGGCGTGCTC 60.301 63.158 0.00 0.00 39.81 4.26
748 782 1.338136 AAGTATGGCTAGGGCGTGCT 61.338 55.000 0.00 0.00 41.15 4.40
749 783 1.146263 AAGTATGGCTAGGGCGTGC 59.854 57.895 0.00 0.00 39.81 5.34
750 784 0.178068 ACAAGTATGGCTAGGGCGTG 59.822 55.000 0.00 0.00 39.81 5.34
751 785 1.411612 GTACAAGTATGGCTAGGGCGT 59.588 52.381 0.00 0.00 39.81 5.68
752 786 1.687123 AGTACAAGTATGGCTAGGGCG 59.313 52.381 0.00 0.00 39.81 6.13
753 787 2.288273 CGAGTACAAGTATGGCTAGGGC 60.288 54.545 0.00 0.00 37.82 5.19
754 788 2.957006 ACGAGTACAAGTATGGCTAGGG 59.043 50.000 0.00 0.00 0.00 3.53
755 789 5.961396 ATACGAGTACAAGTATGGCTAGG 57.039 43.478 11.02 0.00 32.85 3.02
756 790 7.430992 TGTATACGAGTACAAGTATGGCTAG 57.569 40.000 17.93 0.00 35.44 3.42
757 791 7.991084 ATGTATACGAGTACAAGTATGGCTA 57.009 36.000 17.93 6.87 38.03 3.93
758 792 6.896021 ATGTATACGAGTACAAGTATGGCT 57.104 37.500 17.93 5.05 38.03 4.75
759 793 9.713740 GTATATGTATACGAGTACAAGTATGGC 57.286 37.037 17.93 12.84 38.03 4.40
774 808 7.654568 TGGCTATGGCATACGTATATGTATAC 58.345 38.462 15.66 11.07 40.45 1.47
775 809 7.826918 TGGCTATGGCATACGTATATGTATA 57.173 36.000 15.66 3.44 40.45 1.47
776 810 6.724893 TGGCTATGGCATACGTATATGTAT 57.275 37.500 7.96 11.19 40.45 2.29
777 811 6.724893 ATGGCTATGGCATACGTATATGTA 57.275 37.500 7.96 7.26 46.84 2.29
778 812 5.614324 ATGGCTATGGCATACGTATATGT 57.386 39.130 7.96 2.56 46.84 2.29
787 821 4.019681 GGGTACAAGTATGGCTATGGCATA 60.020 45.833 7.06 7.06 46.84 3.14
789 823 2.105821 GGGTACAAGTATGGCTATGGCA 59.894 50.000 2.58 0.00 43.52 4.92
790 824 2.105821 TGGGTACAAGTATGGCTATGGC 59.894 50.000 0.00 0.00 37.82 4.40
791 825 4.640771 ATGGGTACAAGTATGGCTATGG 57.359 45.455 0.00 0.00 0.00 2.74
792 826 6.109156 TGTATGGGTACAAGTATGGCTATG 57.891 41.667 0.00 0.00 37.86 2.23
793 827 6.952605 ATGTATGGGTACAAGTATGGCTAT 57.047 37.500 0.00 0.00 43.60 2.97
794 828 6.071784 CGTATGTATGGGTACAAGTATGGCTA 60.072 42.308 0.00 0.00 43.60 3.93
795 829 5.279306 CGTATGTATGGGTACAAGTATGGCT 60.279 44.000 0.00 0.00 43.60 4.75
796 830 4.927425 CGTATGTATGGGTACAAGTATGGC 59.073 45.833 0.00 0.00 43.60 4.40
797 831 6.092955 ACGTATGTATGGGTACAAGTATGG 57.907 41.667 0.00 0.00 43.60 2.74
811 845 3.697542 TCGGCTATGGCATACGTATGTAT 59.302 43.478 30.63 25.88 42.03 2.29
812 846 3.083293 TCGGCTATGGCATACGTATGTA 58.917 45.455 30.63 22.09 40.87 2.29
813 847 1.890489 TCGGCTATGGCATACGTATGT 59.110 47.619 30.63 17.34 40.87 2.29
814 848 2.259618 GTCGGCTATGGCATACGTATG 58.740 52.381 27.59 27.59 40.87 2.39
815 849 1.890489 TGTCGGCTATGGCATACGTAT 59.110 47.619 14.65 1.14 40.87 3.06
816 850 1.268625 CTGTCGGCTATGGCATACGTA 59.731 52.381 14.65 0.00 40.87 3.57
817 851 0.032130 CTGTCGGCTATGGCATACGT 59.968 55.000 14.65 0.00 40.87 3.57
818 852 0.313987 TCTGTCGGCTATGGCATACG 59.686 55.000 2.32 7.13 40.87 3.06
819 853 2.526304 TTCTGTCGGCTATGGCATAC 57.474 50.000 2.32 0.48 40.87 2.39
820 854 3.769739 AATTCTGTCGGCTATGGCATA 57.230 42.857 7.06 7.06 40.87 3.14
821 855 2.620115 CAAATTCTGTCGGCTATGGCAT 59.380 45.455 4.88 4.88 40.87 4.40
822 856 2.016318 CAAATTCTGTCGGCTATGGCA 58.984 47.619 2.58 0.00 40.87 4.92
823 857 1.268743 GCAAATTCTGTCGGCTATGGC 60.269 52.381 0.00 0.00 37.82 4.40
824 858 2.292267 AGCAAATTCTGTCGGCTATGG 58.708 47.619 0.00 0.00 32.09 2.74
825 859 4.361451 AAAGCAAATTCTGTCGGCTATG 57.639 40.909 0.00 0.00 33.80 2.23
826 860 4.458989 TCAAAAGCAAATTCTGTCGGCTAT 59.541 37.500 0.00 0.00 33.80 2.97
827 861 3.818210 TCAAAAGCAAATTCTGTCGGCTA 59.182 39.130 0.00 0.00 33.80 3.93
828 862 2.622942 TCAAAAGCAAATTCTGTCGGCT 59.377 40.909 0.00 0.00 36.13 5.52
829 863 2.726241 GTCAAAAGCAAATTCTGTCGGC 59.274 45.455 0.00 0.00 0.00 5.54
830 864 2.973224 CGTCAAAAGCAAATTCTGTCGG 59.027 45.455 0.00 0.00 0.00 4.79
831 865 2.401720 GCGTCAAAAGCAAATTCTGTCG 59.598 45.455 0.00 0.00 34.19 4.35
832 866 2.401720 CGCGTCAAAAGCAAATTCTGTC 59.598 45.455 0.00 0.00 34.19 3.51
833 867 2.223479 ACGCGTCAAAAGCAAATTCTGT 60.223 40.909 5.58 0.00 34.19 3.41
834 868 2.384382 ACGCGTCAAAAGCAAATTCTG 58.616 42.857 5.58 0.00 34.19 3.02
835 869 2.650608 GACGCGTCAAAAGCAAATTCT 58.349 42.857 33.09 0.00 34.19 2.40
836 870 1.378807 CGACGCGTCAAAAGCAAATTC 59.621 47.619 35.71 7.84 34.19 2.17
837 871 1.394697 CGACGCGTCAAAAGCAAATT 58.605 45.000 35.71 0.00 34.19 1.82
838 872 0.385473 CCGACGCGTCAAAAGCAAAT 60.385 50.000 35.71 0.00 34.19 2.32
839 873 1.010574 CCGACGCGTCAAAAGCAAA 60.011 52.632 35.71 0.00 34.19 3.68
840 874 2.174969 ACCGACGCGTCAAAAGCAA 61.175 52.632 35.71 0.00 34.19 3.91
841 875 2.586635 ACCGACGCGTCAAAAGCA 60.587 55.556 35.71 0.00 34.19 3.91
842 876 2.127758 CACCGACGCGTCAAAAGC 60.128 61.111 35.71 11.66 0.00 3.51
843 877 2.127758 GCACCGACGCGTCAAAAG 60.128 61.111 35.71 23.33 0.00 2.27
844 878 2.890961 TGCACCGACGCGTCAAAA 60.891 55.556 35.71 15.42 33.35 2.44
845 879 3.632107 GTGCACCGACGCGTCAAA 61.632 61.111 35.71 15.07 33.35 2.69
878 912 6.694447 TGGGTGATAAATAGCCGTATAGAAC 58.306 40.000 0.00 0.00 38.52 3.01
879 913 6.921486 TGGGTGATAAATAGCCGTATAGAA 57.079 37.500 0.00 0.00 38.52 2.10
880 914 6.666113 TGATGGGTGATAAATAGCCGTATAGA 59.334 38.462 0.00 0.00 38.52 1.98
881 915 6.873997 TGATGGGTGATAAATAGCCGTATAG 58.126 40.000 0.00 0.00 38.52 1.31
882 916 6.860790 TGATGGGTGATAAATAGCCGTATA 57.139 37.500 0.00 0.00 38.52 1.47
883 917 5.755409 TGATGGGTGATAAATAGCCGTAT 57.245 39.130 0.00 0.00 38.52 3.06
884 918 5.554437 TTGATGGGTGATAAATAGCCGTA 57.446 39.130 0.00 0.00 38.52 4.02
885 919 4.431416 TTGATGGGTGATAAATAGCCGT 57.569 40.909 0.00 0.00 38.52 5.68
886 920 5.964958 ATTTGATGGGTGATAAATAGCCG 57.035 39.130 0.00 0.00 38.52 5.52
887 921 6.381801 CGAATTTGATGGGTGATAAATAGCC 58.618 40.000 0.00 0.00 36.27 3.93
888 922 5.858581 GCGAATTTGATGGGTGATAAATAGC 59.141 40.000 0.00 0.00 0.00 2.97
889 923 6.381801 GGCGAATTTGATGGGTGATAAATAG 58.618 40.000 0.00 0.00 0.00 1.73
890 924 5.242838 GGGCGAATTTGATGGGTGATAAATA 59.757 40.000 0.00 0.00 0.00 1.40
891 925 4.039124 GGGCGAATTTGATGGGTGATAAAT 59.961 41.667 0.00 0.00 0.00 1.40
892 926 3.383185 GGGCGAATTTGATGGGTGATAAA 59.617 43.478 0.00 0.00 0.00 1.40
893 927 2.955660 GGGCGAATTTGATGGGTGATAA 59.044 45.455 0.00 0.00 0.00 1.75
894 928 2.582052 GGGCGAATTTGATGGGTGATA 58.418 47.619 0.00 0.00 0.00 2.15
895 929 1.402787 GGGCGAATTTGATGGGTGAT 58.597 50.000 0.00 0.00 0.00 3.06
896 930 1.029408 CGGGCGAATTTGATGGGTGA 61.029 55.000 0.00 0.00 0.00 4.02
897 931 1.433064 CGGGCGAATTTGATGGGTG 59.567 57.895 0.00 0.00 0.00 4.61
898 932 2.414785 GCGGGCGAATTTGATGGGT 61.415 57.895 0.00 0.00 0.00 4.51
899 933 1.666209 AAGCGGGCGAATTTGATGGG 61.666 55.000 0.00 0.00 0.00 4.00
900 934 0.173255 AAAGCGGGCGAATTTGATGG 59.827 50.000 0.00 0.00 0.00 3.51
901 935 1.133025 AGAAAGCGGGCGAATTTGATG 59.867 47.619 0.00 0.00 0.00 3.07
902 936 1.401905 GAGAAAGCGGGCGAATTTGAT 59.598 47.619 0.00 0.00 0.00 2.57
903 937 0.802494 GAGAAAGCGGGCGAATTTGA 59.198 50.000 0.00 0.00 0.00 2.69
904 938 0.521291 TGAGAAAGCGGGCGAATTTG 59.479 50.000 0.00 0.00 0.00 2.32
905 939 1.243902 TTGAGAAAGCGGGCGAATTT 58.756 45.000 0.00 0.00 0.00 1.82
906 940 1.243902 TTTGAGAAAGCGGGCGAATT 58.756 45.000 0.00 0.00 0.00 2.17
907 941 1.243902 TTTTGAGAAAGCGGGCGAAT 58.756 45.000 0.00 0.00 0.00 3.34
908 942 1.025812 TTTTTGAGAAAGCGGGCGAA 58.974 45.000 0.00 0.00 0.00 4.70
909 943 2.709170 TTTTTGAGAAAGCGGGCGA 58.291 47.368 0.00 0.00 0.00 5.54
933 967 0.958822 AACTGAAGCGGGCGATTTTT 59.041 45.000 0.00 0.00 0.00 1.94
934 968 0.521735 GAACTGAAGCGGGCGATTTT 59.478 50.000 0.00 0.00 0.00 1.82
935 969 0.321653 AGAACTGAAGCGGGCGATTT 60.322 50.000 0.00 0.00 0.00 2.17
936 970 0.741221 GAGAACTGAAGCGGGCGATT 60.741 55.000 0.00 0.00 0.00 3.34
937 971 1.153549 GAGAACTGAAGCGGGCGAT 60.154 57.895 0.00 0.00 0.00 4.58
1214 1263 4.285790 AGAAGGGGCCCACCTGGA 62.286 66.667 27.72 0.00 40.87 3.86
1671 1723 2.615912 GTGTAGAGGCAAGAATGGATGC 59.384 50.000 0.00 0.00 41.82 3.91
1680 1732 9.035607 CAATTATTAGTGTAGTGTAGAGGCAAG 57.964 37.037 0.00 0.00 0.00 4.01
1742 1794 5.350633 TGAAAAGGTTCTGCAAATTGACAG 58.649 37.500 0.00 4.20 34.60 3.51
1758 1810 4.471386 TCCTCCCTCTTATCACTGAAAAGG 59.529 45.833 0.00 0.00 0.00 3.11
1818 1870 1.092348 GCGTAAGTTGGAACCCATCC 58.908 55.000 0.00 0.00 44.86 3.51
1823 1875 0.879090 CAAGGGCGTAAGTTGGAACC 59.121 55.000 0.00 0.00 41.68 3.62
1858 1910 3.064820 TCTGCGTTTCTTCAGTTTGTTCC 59.935 43.478 0.00 0.00 0.00 3.62
1866 1918 2.033407 CAGTGTGTCTGCGTTTCTTCAG 60.033 50.000 0.00 0.00 37.36 3.02
1880 1940 5.233988 GCTCAGAGAAAGAATACAGTGTGT 58.766 41.667 5.88 0.00 0.00 3.72
1894 1954 8.321353 TCTGAAAAATATTACAGGCTCAGAGAA 58.679 33.333 0.00 0.00 34.61 2.87
1896 2022 8.140677 CTCTGAAAAATATTACAGGCTCAGAG 57.859 38.462 10.40 10.40 45.30 3.35
1902 2028 4.789802 GCGGCTCTGAAAAATATTACAGGC 60.790 45.833 13.44 14.01 0.00 4.85
1903 2029 4.335315 TGCGGCTCTGAAAAATATTACAGG 59.665 41.667 0.00 8.24 0.00 4.00
1904 2030 5.484173 TGCGGCTCTGAAAAATATTACAG 57.516 39.130 0.00 9.50 0.00 2.74
1905 2031 4.201910 GCTGCGGCTCTGAAAAATATTACA 60.202 41.667 11.21 0.00 35.22 2.41
1906 2032 4.201910 TGCTGCGGCTCTGAAAAATATTAC 60.202 41.667 20.27 0.00 39.59 1.89
1907 2033 3.944650 TGCTGCGGCTCTGAAAAATATTA 59.055 39.130 20.27 0.00 39.59 0.98
1908 2034 2.754552 TGCTGCGGCTCTGAAAAATATT 59.245 40.909 20.27 0.00 39.59 1.28
1909 2035 2.368439 TGCTGCGGCTCTGAAAAATAT 58.632 42.857 20.27 0.00 39.59 1.28
1913 2043 0.743688 TTTTGCTGCGGCTCTGAAAA 59.256 45.000 20.27 13.74 39.59 2.29
1920 2050 1.755179 ATAGATGTTTTGCTGCGGCT 58.245 45.000 20.27 0.00 39.59 5.52
1921 2051 2.566952 AATAGATGTTTTGCTGCGGC 57.433 45.000 11.65 11.65 39.26 6.53
1922 2052 5.235305 ACTTAATAGATGTTTTGCTGCGG 57.765 39.130 0.00 0.00 0.00 5.69
1923 2053 6.582295 ACAAACTTAATAGATGTTTTGCTGCG 59.418 34.615 0.00 0.00 34.15 5.18
1924 2054 7.873739 ACAAACTTAATAGATGTTTTGCTGC 57.126 32.000 0.00 0.00 34.15 5.25
1943 2084 7.639039 TGCCATTCATAAGATCGAATACAAAC 58.361 34.615 0.00 0.00 30.74 2.93
2094 2236 4.262808 CCATGGTAACCAATGGAGCAAAAA 60.263 41.667 6.16 0.00 36.95 1.94
2167 2316 1.830477 GGGGGTTATGCTGCAATTTCA 59.170 47.619 6.36 0.00 0.00 2.69
2168 2317 2.110578 AGGGGGTTATGCTGCAATTTC 58.889 47.619 6.36 0.00 0.00 2.17
2219 2368 4.081198 ACATTCTCTCCTAAGCACCTGAAG 60.081 45.833 0.00 0.00 0.00 3.02
2247 2396 3.003793 GCAGTTTCCTTGAAGACTTCCAC 59.996 47.826 12.66 0.79 0.00 4.02
2253 2402 3.316308 ACATGTGCAGTTTCCTTGAAGAC 59.684 43.478 0.00 0.00 0.00 3.01
2269 2418 1.664873 CTCCATCTGAGGCACATGTG 58.335 55.000 21.83 21.83 37.45 3.21
2279 2428 1.414158 GATTCGGGTCCTCCATCTGA 58.586 55.000 0.00 0.00 34.36 3.27
2313 2462 2.165998 GGCAAGCAAGAAGTCCAAGAT 58.834 47.619 0.00 0.00 0.00 2.40
2339 2488 5.734720 TGATCATACTGGTTTGAGGACTTC 58.265 41.667 0.00 0.00 0.00 3.01
2346 2495 5.422012 TGAGCTACTGATCATACTGGTTTGA 59.578 40.000 0.00 0.00 33.24 2.69
2355 2504 6.931281 GCTAACCATTTGAGCTACTGATCATA 59.069 38.462 0.00 0.00 38.48 2.15
2367 2516 1.398390 GGACTGCGCTAACCATTTGAG 59.602 52.381 9.73 0.00 0.00 3.02
2377 2526 0.461548 CTGGATTCAGGACTGCGCTA 59.538 55.000 9.73 0.00 37.36 4.26
2381 2530 2.159028 GGTACTCTGGATTCAGGACTGC 60.159 54.545 0.00 0.00 41.23 4.40
2383 2532 3.100671 GTGGTACTCTGGATTCAGGACT 58.899 50.000 0.00 0.00 41.23 3.85
2447 2596 6.642131 GCATTGTCATATGTATGGCGAAATTT 59.358 34.615 1.90 0.00 41.05 1.82
2453 2602 3.747529 TGAGCATTGTCATATGTATGGCG 59.252 43.478 1.90 0.00 41.05 5.69
2456 2605 7.859377 GGAACTTTGAGCATTGTCATATGTATG 59.141 37.037 1.90 6.71 35.04 2.39
2475 2624 0.555769 TGCCCAAGGTCAGGAACTTT 59.444 50.000 0.00 0.00 35.91 2.66
2510 2659 4.143333 CGGAATCGCTCCACCGGT 62.143 66.667 0.00 0.00 45.74 5.28
2545 2694 0.752009 GCTTCGATTTCCCCCTTCCC 60.752 60.000 0.00 0.00 0.00 3.97
2548 2697 0.631212 ATGGCTTCGATTTCCCCCTT 59.369 50.000 0.00 0.00 0.00 3.95
2834 3064 9.139734 ACATGATTACTTATAACCGGACTTCTA 57.860 33.333 9.46 0.00 0.00 2.10
2842 3072 9.663904 CCAAATTCACATGATTACTTATAACCG 57.336 33.333 0.00 0.00 0.00 4.44
3081 3358 1.638388 CTCTCGCAAGCATCCGCAAA 61.638 55.000 0.00 0.00 42.27 3.68
3118 3395 6.003950 TGCTATTCTTACTTGAACAAGCCTT 58.996 36.000 13.50 0.00 41.99 4.35
3148 3426 2.569853 TGAAATGTGGATAGACCGGTGT 59.430 45.455 14.63 12.06 42.61 4.16
3166 3444 6.235642 GCGTTCGTTACTTCGATAATTTGAA 58.764 36.000 0.00 0.00 39.57 2.69
3244 3524 5.416083 TCTCTTATAGCAAGCAAAGCGTTA 58.584 37.500 0.00 0.00 37.01 3.18
3273 3553 6.229936 TCTTTATAGTAAAGGACATGCCGT 57.770 37.500 8.99 0.00 43.43 5.68
3295 3575 1.130561 GCTACGTTTGCCAACATCCTC 59.869 52.381 0.00 0.00 32.54 3.71
3301 3581 0.039617 TGCATGCTACGTTTGCCAAC 60.040 50.000 20.33 0.00 35.51 3.77
3303 3583 0.887247 ATTGCATGCTACGTTTGCCA 59.113 45.000 20.33 0.00 35.51 4.92
3305 3585 2.985809 TGAAATTGCATGCTACGTTTGC 59.014 40.909 20.33 2.09 36.91 3.68
3306 3586 5.573296 TTTGAAATTGCATGCTACGTTTG 57.427 34.783 20.33 0.00 0.00 2.93
3329 3609 4.009675 TCTTGCATGAGCGTAGGATTTTT 58.990 39.130 0.00 0.00 46.23 1.94
3330 3610 3.609853 TCTTGCATGAGCGTAGGATTTT 58.390 40.909 0.00 0.00 46.23 1.82
3331 3611 3.266510 TCTTGCATGAGCGTAGGATTT 57.733 42.857 0.00 0.00 46.23 2.17
3332 3612 2.988010 TCTTGCATGAGCGTAGGATT 57.012 45.000 0.00 0.00 46.23 3.01
3333 3613 2.632028 AGATCTTGCATGAGCGTAGGAT 59.368 45.455 11.64 0.00 46.23 3.24
3334 3614 2.034878 AGATCTTGCATGAGCGTAGGA 58.965 47.619 11.64 0.00 46.23 2.94
3335 3615 2.522836 AGATCTTGCATGAGCGTAGG 57.477 50.000 11.64 0.00 46.23 3.18
3336 3616 5.058149 AGATAGATCTTGCATGAGCGTAG 57.942 43.478 11.64 0.00 46.23 3.51
3337 3617 5.124617 CCTAGATAGATCTTGCATGAGCGTA 59.875 44.000 11.64 6.01 40.02 4.42
3338 3618 4.082300 CCTAGATAGATCTTGCATGAGCGT 60.082 45.833 11.64 5.52 40.02 5.07
3339 3619 4.157472 TCCTAGATAGATCTTGCATGAGCG 59.843 45.833 11.64 0.00 40.02 5.03
3340 3620 5.418524 TCTCCTAGATAGATCTTGCATGAGC 59.581 44.000 9.67 9.67 38.32 4.26
3341 3621 7.485810 CATCTCCTAGATAGATCTTGCATGAG 58.514 42.308 0.00 1.23 38.32 2.90
3342 3622 7.407393 CATCTCCTAGATAGATCTTGCATGA 57.593 40.000 0.00 4.57 38.32 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.