Multiple sequence alignment - TraesCS4D01G292400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G292400 chr4D 100.000 3291 0 0 1 3291 463462630 463465920 0.000000e+00 6078.0
1 TraesCS4D01G292400 chr4D 90.000 80 5 2 2873 2949 455601479 455601558 2.090000e-17 100.0
2 TraesCS4D01G292400 chr4B 93.280 1384 53 14 934 2305 579405374 579406729 0.000000e+00 2004.0
3 TraesCS4D01G292400 chr4B 95.161 248 12 0 3044 3291 579407521 579407768 3.080000e-105 392.0
4 TraesCS4D01G292400 chr4B 86.224 196 16 7 2340 2525 579406722 579406916 5.570000e-48 202.0
5 TraesCS4D01G292400 chr4B 92.308 52 3 1 2942 2993 19727427 19727477 4.560000e-09 73.1
6 TraesCS4D01G292400 chr4A 91.381 789 56 6 957 1744 6019823 6019046 0.000000e+00 1070.0
7 TraesCS4D01G292400 chr4A 89.565 460 26 7 1859 2305 6019021 6018571 6.160000e-157 564.0
8 TraesCS4D01G292400 chr4A 92.562 242 15 1 3053 3291 6017913 6017672 8.740000e-91 344.0
9 TraesCS4D01G292400 chr4A 92.262 168 9 2 2362 2525 6018560 6018393 5.490000e-58 235.0
10 TraesCS4D01G292400 chr7D 94.444 648 33 3 264 910 478768286 478767641 0.000000e+00 994.0
11 TraesCS4D01G292400 chr7D 94.340 636 34 2 264 898 104228441 104227807 0.000000e+00 974.0
12 TraesCS4D01G292400 chr7D 93.548 651 40 2 263 912 87363552 87362903 0.000000e+00 968.0
13 TraesCS4D01G292400 chr2D 93.981 648 36 3 264 910 57199748 57199103 0.000000e+00 977.0
14 TraesCS4D01G292400 chr2D 86.076 79 11 0 47 125 512098247 512098325 5.850000e-13 86.1
15 TraesCS4D01G292400 chr2D 95.238 42 2 0 2952 2993 175825061 175825102 2.120000e-07 67.6
16 TraesCS4D01G292400 chr5B 93.837 649 38 2 264 911 707137729 707138376 0.000000e+00 976.0
17 TraesCS4D01G292400 chr1D 93.529 649 40 2 264 911 22302035 22302682 0.000000e+00 965.0
18 TraesCS4D01G292400 chr1D 93.519 648 40 2 264 910 122897990 122898636 0.000000e+00 963.0
19 TraesCS4D01G292400 chr1D 93.519 648 40 2 264 910 494853629 494852983 0.000000e+00 963.0
20 TraesCS4D01G292400 chr1D 84.375 128 12 3 1 128 93125111 93124992 5.770000e-23 119.0
21 TraesCS4D01G292400 chr1D 88.679 53 5 1 2941 2993 178463914 178463863 2.740000e-06 63.9
22 TraesCS4D01G292400 chr5A 93.130 655 43 2 263 916 36313573 36314226 0.000000e+00 959.0
23 TraesCS4D01G292400 chr5D 94.444 72 4 0 2879 2950 257513266 257513195 9.650000e-21 111.0
24 TraesCS4D01G292400 chr5D 84.685 111 13 3 2886 2992 371786367 371786477 1.250000e-19 108.0
25 TraesCS4D01G292400 chr6D 93.151 73 5 0 2878 2950 155601954 155602026 1.250000e-19 108.0
26 TraesCS4D01G292400 chr6B 95.522 67 3 0 2884 2950 278674612 278674678 1.250000e-19 108.0
27 TraesCS4D01G292400 chr6A 93.151 73 5 0 2878 2950 209391334 209391406 1.250000e-19 108.0
28 TraesCS4D01G292400 chr3D 95.455 66 3 0 2885 2950 108916346 108916281 4.490000e-19 106.0
29 TraesCS4D01G292400 chr2B 92.958 71 5 0 2880 2950 52469746 52469816 1.620000e-18 104.0
30 TraesCS4D01G292400 chr7B 84.314 102 13 3 2885 2985 476200015 476199916 2.700000e-16 97.1
31 TraesCS4D01G292400 chr2A 88.235 68 8 0 58 125 655281467 655281534 7.570000e-12 82.4
32 TraesCS4D01G292400 chr2A 89.286 56 5 1 2938 2993 67713299 67713353 5.890000e-08 69.4
33 TraesCS4D01G292400 chr2A 89.286 56 5 1 2938 2993 67978607 67978661 5.890000e-08 69.4
34 TraesCS4D01G292400 chr1B 88.679 53 5 1 2941 2993 256205187 256205136 2.740000e-06 63.9
35 TraesCS4D01G292400 chr1A 88.679 53 5 1 2941 2993 181775313 181775262 2.740000e-06 63.9
36 TraesCS4D01G292400 chrUn 97.143 35 0 1 97 130 48509771 48509805 1.280000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G292400 chr4D 463462630 463465920 3290 False 6078.00 6078 100.0000 1 3291 1 chr4D.!!$F2 3290
1 TraesCS4D01G292400 chr4B 579405374 579407768 2394 False 866.00 2004 91.5550 934 3291 3 chr4B.!!$F2 2357
2 TraesCS4D01G292400 chr4A 6017672 6019823 2151 True 553.25 1070 91.4425 957 3291 4 chr4A.!!$R1 2334
3 TraesCS4D01G292400 chr7D 478767641 478768286 645 True 994.00 994 94.4440 264 910 1 chr7D.!!$R3 646
4 TraesCS4D01G292400 chr7D 104227807 104228441 634 True 974.00 974 94.3400 264 898 1 chr7D.!!$R2 634
5 TraesCS4D01G292400 chr7D 87362903 87363552 649 True 968.00 968 93.5480 263 912 1 chr7D.!!$R1 649
6 TraesCS4D01G292400 chr2D 57199103 57199748 645 True 977.00 977 93.9810 264 910 1 chr2D.!!$R1 646
7 TraesCS4D01G292400 chr5B 707137729 707138376 647 False 976.00 976 93.8370 264 911 1 chr5B.!!$F1 647
8 TraesCS4D01G292400 chr1D 22302035 22302682 647 False 965.00 965 93.5290 264 911 1 chr1D.!!$F1 647
9 TraesCS4D01G292400 chr1D 122897990 122898636 646 False 963.00 963 93.5190 264 910 1 chr1D.!!$F2 646
10 TraesCS4D01G292400 chr1D 494852983 494853629 646 True 963.00 963 93.5190 264 910 1 chr1D.!!$R3 646
11 TraesCS4D01G292400 chr5A 36313573 36314226 653 False 959.00 959 93.1300 263 916 1 chr5A.!!$F1 653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.041312 GGTGCAGTGTTACGTGCTTG 60.041 55.0 0.0 0.0 40.54 4.01 F
228 229 0.180406 ACAAGTGAGTTCCGTTGGCT 59.820 50.0 0.0 0.0 0.00 4.75 F
512 513 0.464036 CCGGGGATCTTTCATGTCGA 59.536 55.0 0.0 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1668 1679 0.102663 TTGCAATGTGTGTGGCTGTG 59.897 50.0 0.0 0.0 0.0 3.66 R
1985 2022 0.382515 GCCAAACCAAACTGTACGCA 59.617 50.0 0.0 0.0 0.0 5.24 R
2340 2382 0.031857 TGTGGAGCACGCCAAAATTG 59.968 50.0 0.0 0.0 40.2 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 8.671987 ATAAGTATATATCAGTGCTCCCAACT 57.328 34.615 0.00 0.00 0.00 3.16
48 49 6.597832 AGTATATATCAGTGCTCCCAACTC 57.402 41.667 0.00 0.00 0.00 3.01
49 50 4.899352 ATATATCAGTGCTCCCAACTCC 57.101 45.455 0.00 0.00 0.00 3.85
50 51 1.204146 TATCAGTGCTCCCAACTCCC 58.796 55.000 0.00 0.00 0.00 4.30
51 52 0.842030 ATCAGTGCTCCCAACTCCCA 60.842 55.000 0.00 0.00 0.00 4.37
52 53 1.059584 TCAGTGCTCCCAACTCCCAA 61.060 55.000 0.00 0.00 0.00 4.12
53 54 0.607489 CAGTGCTCCCAACTCCCAAG 60.607 60.000 0.00 0.00 0.00 3.61
54 55 1.303643 GTGCTCCCAACTCCCAAGG 60.304 63.158 0.00 0.00 0.00 3.61
55 56 1.463214 TGCTCCCAACTCCCAAGGA 60.463 57.895 0.00 0.00 0.00 3.36
56 57 0.846427 TGCTCCCAACTCCCAAGGAT 60.846 55.000 0.00 0.00 0.00 3.24
57 58 0.394899 GCTCCCAACTCCCAAGGATG 60.395 60.000 0.00 0.00 0.00 3.51
58 59 0.995024 CTCCCAACTCCCAAGGATGT 59.005 55.000 0.00 0.00 0.00 3.06
59 60 0.698238 TCCCAACTCCCAAGGATGTG 59.302 55.000 0.00 0.00 0.00 3.21
60 61 0.967380 CCCAACTCCCAAGGATGTGC 60.967 60.000 0.00 0.00 0.00 4.57
61 62 0.251297 CCAACTCCCAAGGATGTGCA 60.251 55.000 0.00 0.00 0.00 4.57
62 63 1.619654 CAACTCCCAAGGATGTGCAA 58.380 50.000 0.00 0.00 0.00 4.08
63 64 1.270550 CAACTCCCAAGGATGTGCAAC 59.729 52.381 0.00 0.00 37.35 4.17
64 65 0.773644 ACTCCCAAGGATGTGCAACT 59.226 50.000 0.00 0.00 38.04 3.16
65 66 1.985159 ACTCCCAAGGATGTGCAACTA 59.015 47.619 0.00 0.00 38.04 2.24
66 67 2.290323 ACTCCCAAGGATGTGCAACTAC 60.290 50.000 0.00 0.00 38.04 2.73
67 68 1.702401 TCCCAAGGATGTGCAACTACA 59.298 47.619 0.00 0.00 38.04 2.74
68 69 1.812571 CCCAAGGATGTGCAACTACAC 59.187 52.381 0.00 0.00 41.10 2.90
84 85 2.986311 CACAGGTGCAGTGTTACGT 58.014 52.632 0.00 0.00 32.44 3.57
85 86 0.581529 CACAGGTGCAGTGTTACGTG 59.418 55.000 15.84 15.84 38.32 4.49
86 87 1.157870 ACAGGTGCAGTGTTACGTGC 61.158 55.000 16.78 2.97 40.29 5.34
87 88 0.880278 CAGGTGCAGTGTTACGTGCT 60.880 55.000 0.00 0.00 40.54 4.40
88 89 0.179056 AGGTGCAGTGTTACGTGCTT 60.179 50.000 0.00 0.00 40.54 3.91
89 90 0.041312 GGTGCAGTGTTACGTGCTTG 60.041 55.000 0.00 0.00 40.54 4.01
90 91 0.655733 GTGCAGTGTTACGTGCTTGT 59.344 50.000 0.00 0.00 40.54 3.16
91 92 1.063469 GTGCAGTGTTACGTGCTTGTT 59.937 47.619 0.00 0.00 40.54 2.83
92 93 1.740585 TGCAGTGTTACGTGCTTGTTT 59.259 42.857 0.00 0.00 40.54 2.83
93 94 2.108700 GCAGTGTTACGTGCTTGTTTG 58.891 47.619 0.00 0.00 36.71 2.93
94 95 2.223157 GCAGTGTTACGTGCTTGTTTGA 60.223 45.455 0.00 0.00 36.71 2.69
95 96 3.607439 CAGTGTTACGTGCTTGTTTGAG 58.393 45.455 0.00 0.00 0.00 3.02
96 97 3.063452 CAGTGTTACGTGCTTGTTTGAGT 59.937 43.478 0.00 0.00 0.00 3.41
97 98 3.687698 AGTGTTACGTGCTTGTTTGAGTT 59.312 39.130 0.00 0.00 0.00 3.01
98 99 4.155280 AGTGTTACGTGCTTGTTTGAGTTT 59.845 37.500 0.00 0.00 0.00 2.66
99 100 4.854839 GTGTTACGTGCTTGTTTGAGTTTT 59.145 37.500 0.00 0.00 0.00 2.43
100 101 5.343860 GTGTTACGTGCTTGTTTGAGTTTTT 59.656 36.000 0.00 0.00 0.00 1.94
101 102 5.569823 TGTTACGTGCTTGTTTGAGTTTTTC 59.430 36.000 0.00 0.00 0.00 2.29
102 103 4.434713 ACGTGCTTGTTTGAGTTTTTCT 57.565 36.364 0.00 0.00 0.00 2.52
103 104 4.805219 ACGTGCTTGTTTGAGTTTTTCTT 58.195 34.783 0.00 0.00 0.00 2.52
104 105 5.227152 ACGTGCTTGTTTGAGTTTTTCTTT 58.773 33.333 0.00 0.00 0.00 2.52
105 106 5.118510 ACGTGCTTGTTTGAGTTTTTCTTTG 59.881 36.000 0.00 0.00 0.00 2.77
106 107 5.315982 GTGCTTGTTTGAGTTTTTCTTTGC 58.684 37.500 0.00 0.00 0.00 3.68
107 108 4.993584 TGCTTGTTTGAGTTTTTCTTTGCA 59.006 33.333 0.00 0.00 0.00 4.08
108 109 5.120519 TGCTTGTTTGAGTTTTTCTTTGCAG 59.879 36.000 0.00 0.00 0.00 4.41
109 110 5.120674 GCTTGTTTGAGTTTTTCTTTGCAGT 59.879 36.000 0.00 0.00 0.00 4.40
110 111 6.464895 TTGTTTGAGTTTTTCTTTGCAGTG 57.535 33.333 0.00 0.00 0.00 3.66
111 112 5.537188 TGTTTGAGTTTTTCTTTGCAGTGT 58.463 33.333 0.00 0.00 0.00 3.55
112 113 5.988561 TGTTTGAGTTTTTCTTTGCAGTGTT 59.011 32.000 0.00 0.00 0.00 3.32
113 114 6.073873 TGTTTGAGTTTTTCTTTGCAGTGTTG 60.074 34.615 0.00 0.00 0.00 3.33
126 127 3.441496 CAGTGTTGCAAGTCCATTGTT 57.559 42.857 0.00 0.00 41.29 2.83
127 128 3.784338 CAGTGTTGCAAGTCCATTGTTT 58.216 40.909 0.00 0.00 41.29 2.83
128 129 4.183101 CAGTGTTGCAAGTCCATTGTTTT 58.817 39.130 0.00 0.00 41.29 2.43
129 130 4.630940 CAGTGTTGCAAGTCCATTGTTTTT 59.369 37.500 0.00 0.00 41.29 1.94
130 131 5.809562 CAGTGTTGCAAGTCCATTGTTTTTA 59.190 36.000 0.00 0.00 41.29 1.52
131 132 6.479660 CAGTGTTGCAAGTCCATTGTTTTTAT 59.520 34.615 0.00 0.00 41.29 1.40
132 133 7.011295 CAGTGTTGCAAGTCCATTGTTTTTATT 59.989 33.333 0.00 0.00 41.29 1.40
133 134 7.552330 AGTGTTGCAAGTCCATTGTTTTTATTT 59.448 29.630 0.00 0.00 41.29 1.40
134 135 8.180920 GTGTTGCAAGTCCATTGTTTTTATTTT 58.819 29.630 0.00 0.00 41.29 1.82
135 136 8.734386 TGTTGCAAGTCCATTGTTTTTATTTTT 58.266 25.926 0.00 0.00 41.29 1.94
181 182 7.455641 AAAACATTGGTAATCCGATACAACA 57.544 32.000 0.00 0.00 36.15 3.33
182 183 7.639113 AAACATTGGTAATCCGATACAACAT 57.361 32.000 0.00 0.00 36.15 2.71
183 184 7.639113 AACATTGGTAATCCGATACAACATT 57.361 32.000 0.00 0.00 36.15 2.71
184 185 7.639113 ACATTGGTAATCCGATACAACATTT 57.361 32.000 0.00 0.00 36.15 2.32
185 186 8.062065 ACATTGGTAATCCGATACAACATTTT 57.938 30.769 0.00 0.00 36.15 1.82
186 187 7.973388 ACATTGGTAATCCGATACAACATTTTG 59.027 33.333 0.00 0.00 36.15 2.44
187 188 7.455641 TTGGTAATCCGATACAACATTTTGT 57.544 32.000 2.31 2.31 41.93 2.83
188 189 8.563123 TTGGTAATCCGATACAACATTTTGTA 57.437 30.769 6.90 6.90 43.04 2.41
189 190 8.203937 TGGTAATCCGATACAACATTTTGTAG 57.796 34.615 10.07 0.00 42.60 2.74
190 191 7.825270 TGGTAATCCGATACAACATTTTGTAGT 59.175 33.333 10.07 0.00 42.60 2.73
222 223 5.470368 TCTAATGAAGACAAGTGAGTTCCG 58.530 41.667 0.00 0.00 0.00 4.30
223 224 3.753294 ATGAAGACAAGTGAGTTCCGT 57.247 42.857 0.00 0.00 0.00 4.69
224 225 3.536956 TGAAGACAAGTGAGTTCCGTT 57.463 42.857 0.00 0.00 0.00 4.44
225 226 3.194861 TGAAGACAAGTGAGTTCCGTTG 58.805 45.455 0.00 0.00 0.00 4.10
226 227 2.240493 AGACAAGTGAGTTCCGTTGG 57.760 50.000 0.00 0.00 0.00 3.77
227 228 0.586802 GACAAGTGAGTTCCGTTGGC 59.413 55.000 0.00 0.00 0.00 4.52
228 229 0.180406 ACAAGTGAGTTCCGTTGGCT 59.820 50.000 0.00 0.00 0.00 4.75
229 230 1.414919 ACAAGTGAGTTCCGTTGGCTA 59.585 47.619 0.00 0.00 0.00 3.93
230 231 2.158871 ACAAGTGAGTTCCGTTGGCTAA 60.159 45.455 0.00 0.00 0.00 3.09
231 232 2.875933 CAAGTGAGTTCCGTTGGCTAAA 59.124 45.455 0.00 0.00 0.00 1.85
232 233 2.490991 AGTGAGTTCCGTTGGCTAAAC 58.509 47.619 0.00 0.00 35.25 2.01
233 234 1.534163 GTGAGTTCCGTTGGCTAAACC 59.466 52.381 0.00 0.00 35.13 3.27
234 235 1.162698 GAGTTCCGTTGGCTAAACCC 58.837 55.000 0.00 0.00 37.83 4.11
235 236 0.769247 AGTTCCGTTGGCTAAACCCT 59.231 50.000 0.00 0.00 37.83 4.34
236 237 1.144298 AGTTCCGTTGGCTAAACCCTT 59.856 47.619 0.00 0.00 37.83 3.95
237 238 1.958579 GTTCCGTTGGCTAAACCCTTT 59.041 47.619 0.00 0.00 37.83 3.11
238 239 3.148412 GTTCCGTTGGCTAAACCCTTTA 58.852 45.455 0.00 0.00 37.83 1.85
239 240 3.062122 TCCGTTGGCTAAACCCTTTAG 57.938 47.619 0.00 0.00 44.25 1.85
278 279 1.577328 CGCGTGGTGGCAAAGAAGAT 61.577 55.000 0.00 0.00 0.00 2.40
326 327 2.733218 CAGAACGAACAGCGCCGA 60.733 61.111 2.29 0.00 46.04 5.54
328 329 3.033764 GAACGAACAGCGCCGACA 61.034 61.111 2.29 0.00 46.04 4.35
329 330 2.586635 AACGAACAGCGCCGACAA 60.587 55.556 2.29 0.00 46.04 3.18
464 465 1.417517 TCACAGAGGGCGATTATGCAT 59.582 47.619 3.79 3.79 36.28 3.96
512 513 0.464036 CCGGGGATCTTTCATGTCGA 59.536 55.000 0.00 0.00 0.00 4.20
519 520 3.448686 GATCTTTCATGTCGACGTCCAT 58.551 45.455 7.47 5.70 0.00 3.41
521 522 2.230266 TCTTTCATGTCGACGTCCATGA 59.770 45.455 24.72 24.72 44.17 3.07
733 735 6.850234 AGTTATCTAGTAGATTTCGGGAGGA 58.150 40.000 17.70 0.00 36.20 3.71
793 797 2.301296 GCTCATAAGCTGGCTAGATGGA 59.699 50.000 0.00 0.00 45.55 3.41
799 804 1.133761 AGCTGGCTAGATGGAGACGTA 60.134 52.381 0.00 0.00 0.00 3.57
840 846 0.614415 TTGATGCCCCGCCTGATTTT 60.614 50.000 0.00 0.00 0.00 1.82
900 906 9.803315 CTTTGATTAATAAAGTAAGCTTTCCCC 57.197 33.333 3.20 0.00 43.28 4.81
901 907 7.891498 TGATTAATAAAGTAAGCTTTCCCCC 57.109 36.000 3.20 0.00 43.28 5.40
902 908 7.648770 TGATTAATAAAGTAAGCTTTCCCCCT 58.351 34.615 3.20 0.00 43.28 4.79
952 958 9.834628 TTAATAGCAAAGGAATTGAGTTTTACG 57.165 29.630 0.00 0.00 41.85 3.18
968 974 4.661993 TTTACGCATGATGAATATCCGC 57.338 40.909 0.00 0.00 32.09 5.54
987 993 3.509184 CCGCATCATTCTGAGGATCTCTA 59.491 47.826 0.00 0.00 38.25 2.43
996 1002 7.498239 TCATTCTGAGGATCTCTAGCAAATTTG 59.502 37.037 14.03 14.03 34.92 2.32
997 1003 6.550938 TCTGAGGATCTCTAGCAAATTTGA 57.449 37.500 22.31 0.69 34.92 2.69
1030 1038 1.487482 GCCAAACCGCAAAAGTTCTC 58.513 50.000 0.00 0.00 0.00 2.87
1031 1039 1.067060 GCCAAACCGCAAAAGTTCTCT 59.933 47.619 0.00 0.00 0.00 3.10
1072 1080 3.128938 CGTTATCTCCAACCTCTCGTCTT 59.871 47.826 0.00 0.00 0.00 3.01
1338 1349 2.997315 CTCCGCCACCACCTCTCA 60.997 66.667 0.00 0.00 0.00 3.27
1361 1372 2.038033 CCTTCTCCCAGGTACGAAAACA 59.962 50.000 0.00 0.00 0.00 2.83
1664 1675 4.459089 GTCTCGCCCCTCAGGTGC 62.459 72.222 0.00 0.00 46.60 5.01
1727 1747 5.244178 GCACTATCCCAGCAGTAGTAATACT 59.756 44.000 0.00 0.00 0.00 2.12
1773 1797 1.740585 CGACACAAGAAAACCACCACA 59.259 47.619 0.00 0.00 0.00 4.17
1774 1798 2.357637 CGACACAAGAAAACCACCACAT 59.642 45.455 0.00 0.00 0.00 3.21
1775 1799 3.181491 CGACACAAGAAAACCACCACATT 60.181 43.478 0.00 0.00 0.00 2.71
1776 1800 4.359706 GACACAAGAAAACCACCACATTC 58.640 43.478 0.00 0.00 0.00 2.67
1784 1808 2.692709 ACCACCACATTCCATTTCCA 57.307 45.000 0.00 0.00 0.00 3.53
1790 1814 3.052642 ACCACATTCCATTTCCATAGCCT 60.053 43.478 0.00 0.00 0.00 4.58
1828 1852 3.063725 CGTGTACTCTACTGGTAGTGCTC 59.936 52.174 7.52 3.85 34.84 4.26
1829 1853 3.377798 GTGTACTCTACTGGTAGTGCTCC 59.622 52.174 7.52 0.00 34.84 4.70
1897 1924 1.736032 GCACCTACCACTAAGACGCAG 60.736 57.143 0.00 0.00 0.00 5.18
1940 1972 6.812879 AATCTTGGTTAAAAGTCGTAAGGG 57.187 37.500 0.00 0.00 38.47 3.95
1980 2017 3.550030 GCAGAAAGGCTTTTGCTTAACGA 60.550 43.478 25.90 0.00 46.54 3.85
1984 2021 2.994849 AGGCTTTTGCTTAACGAAACG 58.005 42.857 0.00 0.00 46.54 3.60
1985 2022 2.356695 AGGCTTTTGCTTAACGAAACGT 59.643 40.909 0.00 0.00 46.54 3.99
1986 2023 2.466205 GGCTTTTGCTTAACGAAACGTG 59.534 45.455 0.00 0.00 46.54 4.49
2004 2041 0.382515 TGCGTACAGTTTGGTTTGGC 59.617 50.000 0.00 0.00 0.00 4.52
2182 2220 2.430610 CGAGCTCCCCTCCCAGAAG 61.431 68.421 8.47 0.00 37.27 2.85
2183 2221 1.002274 GAGCTCCCCTCCCAGAAGA 59.998 63.158 0.87 0.00 34.35 2.87
2238 2276 1.177401 GCCAACCAGAGGAAATGGAC 58.823 55.000 0.00 1.31 40.51 4.02
2294 2335 0.597118 GGATGCTGCTCGCTAGACTG 60.597 60.000 0.00 0.00 40.11 3.51
2305 2347 2.416547 TCGCTAGACTGCTGCAATTTTC 59.583 45.455 3.02 0.00 0.00 2.29
2306 2348 2.417933 CGCTAGACTGCTGCAATTTTCT 59.582 45.455 3.02 5.94 0.00 2.52
2307 2349 3.120060 CGCTAGACTGCTGCAATTTTCTT 60.120 43.478 3.02 0.00 0.00 2.52
2308 2350 4.093408 CGCTAGACTGCTGCAATTTTCTTA 59.907 41.667 3.02 0.00 0.00 2.10
2309 2351 5.327891 GCTAGACTGCTGCAATTTTCTTAC 58.672 41.667 3.02 0.00 0.00 2.34
2310 2352 4.773323 AGACTGCTGCAATTTTCTTACC 57.227 40.909 3.02 0.00 0.00 2.85
2311 2353 4.144297 AGACTGCTGCAATTTTCTTACCA 58.856 39.130 3.02 0.00 0.00 3.25
2312 2354 4.768968 AGACTGCTGCAATTTTCTTACCAT 59.231 37.500 3.02 0.00 0.00 3.55
2313 2355 5.244626 AGACTGCTGCAATTTTCTTACCATT 59.755 36.000 3.02 0.00 0.00 3.16
2314 2356 5.857268 ACTGCTGCAATTTTCTTACCATTT 58.143 33.333 3.02 0.00 0.00 2.32
2315 2357 6.290605 ACTGCTGCAATTTTCTTACCATTTT 58.709 32.000 3.02 0.00 0.00 1.82
2316 2358 6.424812 ACTGCTGCAATTTTCTTACCATTTTC 59.575 34.615 3.02 0.00 0.00 2.29
2317 2359 6.523840 TGCTGCAATTTTCTTACCATTTTCT 58.476 32.000 0.00 0.00 0.00 2.52
2318 2360 6.991531 TGCTGCAATTTTCTTACCATTTTCTT 59.008 30.769 0.00 0.00 0.00 2.52
2319 2361 7.041916 TGCTGCAATTTTCTTACCATTTTCTTG 60.042 33.333 0.00 0.00 0.00 3.02
2320 2362 7.188468 TGCAATTTTCTTACCATTTTCTTGC 57.812 32.000 0.00 0.00 36.65 4.01
2321 2363 6.765036 TGCAATTTTCTTACCATTTTCTTGCA 59.235 30.769 0.00 0.00 41.85 4.08
2322 2364 7.444792 TGCAATTTTCTTACCATTTTCTTGCAT 59.555 29.630 0.00 0.00 39.96 3.96
2323 2365 7.959109 GCAATTTTCTTACCATTTTCTTGCATC 59.041 33.333 0.00 0.00 36.27 3.91
2324 2366 8.991026 CAATTTTCTTACCATTTTCTTGCATCA 58.009 29.630 0.00 0.00 0.00 3.07
2325 2367 9.558396 AATTTTCTTACCATTTTCTTGCATCAA 57.442 25.926 0.00 0.00 0.00 2.57
2326 2368 7.945033 TTTCTTACCATTTTCTTGCATCAAC 57.055 32.000 0.00 0.00 0.00 3.18
2327 2369 6.024552 TCTTACCATTTTCTTGCATCAACC 57.975 37.500 0.00 0.00 0.00 3.77
2328 2370 3.302365 ACCATTTTCTTGCATCAACCG 57.698 42.857 0.00 0.00 0.00 4.44
2329 2371 2.029110 ACCATTTTCTTGCATCAACCGG 60.029 45.455 0.00 0.00 0.00 5.28
2330 2372 1.994779 CATTTTCTTGCATCAACCGGC 59.005 47.619 0.00 0.00 0.00 6.13
2331 2373 1.327303 TTTTCTTGCATCAACCGGCT 58.673 45.000 0.00 0.00 0.00 5.52
2332 2374 0.597568 TTTCTTGCATCAACCGGCTG 59.402 50.000 0.00 0.00 0.00 4.85
2333 2375 0.537143 TTCTTGCATCAACCGGCTGT 60.537 50.000 0.00 0.00 0.00 4.40
2334 2376 0.955428 TCTTGCATCAACCGGCTGTC 60.955 55.000 0.00 0.00 0.00 3.51
2335 2377 1.228094 TTGCATCAACCGGCTGTCA 60.228 52.632 0.00 0.00 0.00 3.58
2336 2378 0.821301 TTGCATCAACCGGCTGTCAA 60.821 50.000 0.00 3.65 0.00 3.18
2337 2379 0.821301 TGCATCAACCGGCTGTCAAA 60.821 50.000 0.00 0.00 0.00 2.69
2338 2380 0.387239 GCATCAACCGGCTGTCAAAC 60.387 55.000 0.00 0.00 0.00 2.93
2339 2381 0.110238 CATCAACCGGCTGTCAAACG 60.110 55.000 0.00 0.00 0.00 3.60
2340 2382 1.852067 ATCAACCGGCTGTCAAACGC 61.852 55.000 0.00 0.00 0.00 4.84
2341 2383 2.515057 AACCGGCTGTCAAACGCA 60.515 55.556 0.00 0.00 0.00 5.24
2342 2384 2.115911 AACCGGCTGTCAAACGCAA 61.116 52.632 0.00 0.00 0.00 4.85
2343 2385 1.452145 AACCGGCTGTCAAACGCAAT 61.452 50.000 0.00 0.00 0.00 3.56
2344 2386 1.285641 CCGGCTGTCAAACGCAATT 59.714 52.632 0.00 0.00 0.00 2.32
2349 2391 1.070643 GCTGTCAAACGCAATTTTGGC 60.071 47.619 1.14 1.14 40.77 4.52
2358 2400 1.284297 GCAATTTTGGCGTGCTCCAC 61.284 55.000 0.00 0.00 35.50 4.02
2380 2422 4.213270 ACAACCATCAAATGTGTACTGTCG 59.787 41.667 0.00 0.00 0.00 4.35
2424 2472 4.082125 TGAGGCCTGATTTTTCTTCTTCC 58.918 43.478 12.00 0.00 0.00 3.46
2495 2546 4.906618 TGGGTCTTTATGAGTTTCTCACC 58.093 43.478 1.44 0.00 43.63 4.02
2517 2568 4.687483 CCTTGTTGATTGCTTGTGGAAATC 59.313 41.667 0.00 0.00 39.78 2.17
2525 2576 6.766944 TGATTGCTTGTGGAAATCAAACAAAT 59.233 30.769 0.00 0.00 44.54 2.32
2526 2577 5.987777 TGCTTGTGGAAATCAAACAAATG 57.012 34.783 0.00 0.00 33.67 2.32
2527 2578 5.426504 TGCTTGTGGAAATCAAACAAATGT 58.573 33.333 0.00 0.00 33.67 2.71
2530 2581 5.604758 TGTGGAAATCAAACAAATGTCCA 57.395 34.783 0.00 0.00 38.04 4.02
2531 2582 6.172136 TGTGGAAATCAAACAAATGTCCAT 57.828 33.333 0.00 0.00 41.50 3.41
2532 2583 5.990386 TGTGGAAATCAAACAAATGTCCATG 59.010 36.000 0.00 0.00 41.50 3.66
2539 2590 9.480053 AAATCAAACAAATGTCCATGTTTCTAG 57.520 29.630 1.21 0.00 45.31 2.43
2540 2591 6.980593 TCAAACAAATGTCCATGTTTCTAGG 58.019 36.000 1.21 0.00 45.31 3.02
2541 2592 5.982890 AACAAATGTCCATGTTTCTAGGG 57.017 39.130 0.00 0.00 36.39 3.53
2543 2594 5.256474 ACAAATGTCCATGTTTCTAGGGAG 58.744 41.667 0.00 0.00 0.00 4.30
2544 2595 5.222130 ACAAATGTCCATGTTTCTAGGGAGT 60.222 40.000 0.00 0.00 0.00 3.85
2545 2596 4.762289 ATGTCCATGTTTCTAGGGAGTC 57.238 45.455 0.00 0.00 0.00 3.36
2553 2604 6.409695 CCATGTTTCTAGGGAGTCCACATAAT 60.410 42.308 12.30 0.00 34.83 1.28
2555 2606 7.931015 TGTTTCTAGGGAGTCCACATAATAT 57.069 36.000 12.30 0.00 34.83 1.28
2557 2608 7.567250 TGTTTCTAGGGAGTCCACATAATATGA 59.433 37.037 12.30 0.00 34.83 2.15
2558 2609 7.540474 TTCTAGGGAGTCCACATAATATGAC 57.460 40.000 12.30 0.00 34.83 3.06
2564 2615 8.061304 AGGGAGTCCACATAATATGACAAAATT 58.939 33.333 12.30 0.00 34.83 1.82
2565 2616 8.137437 GGGAGTCCACATAATATGACAAAATTG 58.863 37.037 12.30 0.00 0.00 2.32
2566 2617 7.649306 GGAGTCCACATAATATGACAAAATTGC 59.351 37.037 7.33 0.00 0.00 3.56
2567 2618 8.297470 AGTCCACATAATATGACAAAATTGCT 57.703 30.769 7.33 0.00 0.00 3.91
2568 2619 8.408601 AGTCCACATAATATGACAAAATTGCTC 58.591 33.333 7.33 0.00 0.00 4.26
2582 2633 9.766277 GACAAAATTGCTCAAACATTAAACAAA 57.234 25.926 0.00 0.00 0.00 2.83
2583 2634 9.553418 ACAAAATTGCTCAAACATTAAACAAAC 57.447 25.926 0.00 0.00 0.00 2.93
2584 2635 9.552114 CAAAATTGCTCAAACATTAAACAAACA 57.448 25.926 0.00 0.00 0.00 2.83
2585 2636 9.771915 AAAATTGCTCAAACATTAAACAAACAG 57.228 25.926 0.00 0.00 0.00 3.16
2586 2637 8.715191 AATTGCTCAAACATTAAACAAACAGA 57.285 26.923 0.00 0.00 0.00 3.41
2588 2639 6.039616 TGCTCAAACATTAAACAAACAGACC 58.960 36.000 0.00 0.00 0.00 3.85
2589 2640 6.127479 TGCTCAAACATTAAACAAACAGACCT 60.127 34.615 0.00 0.00 0.00 3.85
2590 2641 6.417930 GCTCAAACATTAAACAAACAGACCTC 59.582 38.462 0.00 0.00 0.00 3.85
2591 2642 6.801575 TCAAACATTAAACAAACAGACCTCC 58.198 36.000 0.00 0.00 0.00 4.30
2616 2676 9.667107 CCTGTCTTCTAAATATGGAAGTTAACA 57.333 33.333 8.61 8.45 42.84 2.41
2623 2683 9.802039 TCTAAATATGGAAGTTAACAACAACCT 57.198 29.630 8.61 0.00 32.68 3.50
2630 2690 8.934507 TGGAAGTTAACAACAACCTTTTTATG 57.065 30.769 8.61 0.00 32.68 1.90
2631 2691 7.492994 TGGAAGTTAACAACAACCTTTTTATGC 59.507 33.333 8.61 0.00 32.68 3.14
2634 2694 2.389998 ACAACAACCTTTTTATGCGCG 58.610 42.857 0.00 0.00 0.00 6.86
2637 2697 0.984109 CAACCTTTTTATGCGCGCAG 59.016 50.000 38.44 24.77 0.00 5.18
2641 2701 1.400888 CCTTTTTATGCGCGCAGTTCA 60.401 47.619 38.44 20.55 0.00 3.18
2645 2705 1.893759 TTATGCGCGCAGTTCATTTG 58.106 45.000 38.44 0.00 0.00 2.32
2659 2719 3.110447 TCATTTGAACAAGCAAAGCCC 57.890 42.857 0.00 0.00 40.68 5.19
2663 2723 1.367471 GAACAAGCAAAGCCCCACC 59.633 57.895 0.00 0.00 0.00 4.61
2665 2725 2.597217 CAAGCAAAGCCCCACCGA 60.597 61.111 0.00 0.00 0.00 4.69
2667 2727 1.456705 AAGCAAAGCCCCACCGAAA 60.457 52.632 0.00 0.00 0.00 3.46
2668 2728 1.744320 AAGCAAAGCCCCACCGAAAC 61.744 55.000 0.00 0.00 0.00 2.78
2670 2730 1.744320 GCAAAGCCCCACCGAAACTT 61.744 55.000 0.00 0.00 0.00 2.66
2674 2734 0.396556 AGCCCCACCGAAACTTTGTT 60.397 50.000 0.00 0.00 0.00 2.83
2675 2735 0.462375 GCCCCACCGAAACTTTGTTT 59.538 50.000 0.00 0.00 0.00 2.83
2678 2738 3.215975 CCCCACCGAAACTTTGTTTAGA 58.784 45.455 5.18 0.00 0.00 2.10
2680 2740 3.303526 CCCACCGAAACTTTGTTTAGACG 60.304 47.826 5.18 1.69 0.00 4.18
2681 2741 3.556775 CCACCGAAACTTTGTTTAGACGA 59.443 43.478 0.00 0.00 0.00 4.20
2682 2742 4.034279 CCACCGAAACTTTGTTTAGACGAA 59.966 41.667 0.00 0.00 0.00 3.85
2684 2744 6.022821 CACCGAAACTTTGTTTAGACGAAAA 58.977 36.000 0.00 0.00 0.00 2.29
2685 2745 6.022017 CACCGAAACTTTGTTTAGACGAAAAC 60.022 38.462 0.00 0.00 39.35 2.43
2687 2747 6.410048 CCGAAACTTTGTTTAGACGAAAACTC 59.590 38.462 11.81 2.87 39.57 3.01
2689 2749 6.651755 AACTTTGTTTAGACGAAAACTCGA 57.348 33.333 0.89 0.00 39.57 4.04
2694 2754 6.831727 TGTTTAGACGAAAACTCGAATGAA 57.168 33.333 0.89 0.00 39.57 2.57
2695 2755 7.236674 TGTTTAGACGAAAACTCGAATGAAA 57.763 32.000 0.89 0.00 39.57 2.69
2696 2756 7.121272 TGTTTAGACGAAAACTCGAATGAAAC 58.879 34.615 0.89 6.78 39.57 2.78
2697 2757 7.010738 TGTTTAGACGAAAACTCGAATGAAACT 59.989 33.333 0.89 0.00 39.57 2.66
2698 2758 8.482429 GTTTAGACGAAAACTCGAATGAAACTA 58.518 33.333 0.89 0.00 36.60 2.24
2699 2759 8.752766 TTAGACGAAAACTCGAATGAAACTAT 57.247 30.769 0.89 0.00 36.85 2.12
2700 2760 9.844790 TTAGACGAAAACTCGAATGAAACTATA 57.155 29.630 0.89 0.00 36.85 1.31
2701 2761 8.170999 AGACGAAAACTCGAATGAAACTATAC 57.829 34.615 0.89 0.00 36.85 1.47
2702 2762 7.811236 AGACGAAAACTCGAATGAAACTATACA 59.189 33.333 0.89 0.00 36.85 2.29
2704 2764 8.219105 ACGAAAACTCGAATGAAACTATACAAC 58.781 33.333 0.89 0.00 36.85 3.32
2708 2768 7.988904 ACTCGAATGAAACTATACAACTAGC 57.011 36.000 0.00 0.00 0.00 3.42
2709 2769 7.773149 ACTCGAATGAAACTATACAACTAGCT 58.227 34.615 0.00 0.00 0.00 3.32
2710 2770 8.900781 ACTCGAATGAAACTATACAACTAGCTA 58.099 33.333 0.00 0.00 0.00 3.32
2711 2771 9.900710 CTCGAATGAAACTATACAACTAGCTAT 57.099 33.333 0.00 0.00 0.00 2.97
2749 2809 9.617975 GAAAAGATCTTGTAAAAACATCCTCAG 57.382 33.333 9.17 0.00 0.00 3.35
2752 2812 8.558973 AGATCTTGTAAAAACATCCTCAGAAG 57.441 34.615 0.00 0.00 0.00 2.85
2759 2819 9.349713 TGTAAAAACATCCTCAGAAGTTACATT 57.650 29.630 0.00 0.00 32.94 2.71
2773 2835 7.329717 CAGAAGTTACATTACAGGTCAGAGTTC 59.670 40.741 0.00 0.00 0.00 3.01
2785 2847 3.254892 GTCAGAGTTCGATGGTTCTTCC 58.745 50.000 0.00 0.00 0.00 3.46
2786 2848 3.056465 GTCAGAGTTCGATGGTTCTTCCT 60.056 47.826 0.00 0.00 37.07 3.36
2788 2850 4.040461 TCAGAGTTCGATGGTTCTTCCTTT 59.960 41.667 0.00 0.00 37.07 3.11
2789 2851 4.153117 CAGAGTTCGATGGTTCTTCCTTTG 59.847 45.833 0.00 0.00 37.07 2.77
2791 2853 2.814336 GTTCGATGGTTCTTCCTTTGCT 59.186 45.455 0.00 0.00 37.07 3.91
2792 2854 3.973206 TCGATGGTTCTTCCTTTGCTA 57.027 42.857 0.00 0.00 37.07 3.49
2793 2855 3.596214 TCGATGGTTCTTCCTTTGCTAC 58.404 45.455 0.00 0.00 37.07 3.58
2794 2856 2.678336 CGATGGTTCTTCCTTTGCTACC 59.322 50.000 0.00 0.00 37.07 3.18
2795 2857 2.579410 TGGTTCTTCCTTTGCTACCC 57.421 50.000 0.00 0.00 37.07 3.69
2796 2858 1.271163 TGGTTCTTCCTTTGCTACCCG 60.271 52.381 0.00 0.00 37.07 5.28
2797 2859 1.450025 GTTCTTCCTTTGCTACCCGG 58.550 55.000 0.00 0.00 0.00 5.73
2798 2860 1.002773 GTTCTTCCTTTGCTACCCGGA 59.997 52.381 0.73 0.00 0.00 5.14
2802 2897 0.766131 TCCTTTGCTACCCGGAACAA 59.234 50.000 0.73 0.00 0.00 2.83
2806 2901 3.404899 CTTTGCTACCCGGAACAAGTAA 58.595 45.455 0.73 0.00 0.00 2.24
2813 2908 1.265905 CCCGGAACAAGTAACTGCAAC 59.734 52.381 0.73 0.00 0.00 4.17
2816 2911 2.286772 CGGAACAAGTAACTGCAACCAC 60.287 50.000 0.00 0.00 0.00 4.16
2818 2913 4.131596 GGAACAAGTAACTGCAACCACTA 58.868 43.478 0.00 0.00 0.00 2.74
2820 2915 5.106673 GGAACAAGTAACTGCAACCACTATC 60.107 44.000 0.00 0.00 0.00 2.08
2841 2954 1.805869 CTGCTCAAGGAGTGAAGTGG 58.194 55.000 0.00 0.00 35.22 4.00
2842 2955 1.071385 CTGCTCAAGGAGTGAAGTGGT 59.929 52.381 0.00 0.00 35.22 4.16
2844 2957 2.092429 TGCTCAAGGAGTGAAGTGGTTT 60.092 45.455 0.00 0.00 35.22 3.27
2845 2958 2.952310 GCTCAAGGAGTGAAGTGGTTTT 59.048 45.455 0.00 0.00 35.22 2.43
2846 2959 3.003793 GCTCAAGGAGTGAAGTGGTTTTC 59.996 47.826 0.00 0.00 35.22 2.29
2847 2960 3.551846 TCAAGGAGTGAAGTGGTTTTCC 58.448 45.455 0.00 0.00 35.07 3.13
2848 2961 3.202151 TCAAGGAGTGAAGTGGTTTTCCT 59.798 43.478 0.00 0.00 35.38 3.36
2849 2962 3.953542 AGGAGTGAAGTGGTTTTCCTT 57.046 42.857 0.00 0.00 41.38 3.36
2850 2963 4.251103 AGGAGTGAAGTGGTTTTCCTTT 57.749 40.909 0.00 0.00 41.38 3.11
2851 2964 5.382664 AGGAGTGAAGTGGTTTTCCTTTA 57.617 39.130 0.00 0.00 41.38 1.85
2852 2965 5.953571 AGGAGTGAAGTGGTTTTCCTTTAT 58.046 37.500 0.00 0.00 41.38 1.40
2853 2966 6.373759 AGGAGTGAAGTGGTTTTCCTTTATT 58.626 36.000 0.00 0.00 41.38 1.40
2854 2967 6.265422 AGGAGTGAAGTGGTTTTCCTTTATTG 59.735 38.462 0.00 0.00 41.38 1.90
2855 2968 6.405278 AGTGAAGTGGTTTTCCTTTATTGG 57.595 37.500 0.00 0.00 41.38 3.16
2856 2969 4.988540 GTGAAGTGGTTTTCCTTTATTGGC 59.011 41.667 0.00 0.00 41.38 4.52
2857 2970 4.898861 TGAAGTGGTTTTCCTTTATTGGCT 59.101 37.500 0.00 0.00 41.38 4.75
2858 2971 4.871933 AGTGGTTTTCCTTTATTGGCTG 57.128 40.909 0.00 0.00 41.38 4.85
2859 2972 4.479158 AGTGGTTTTCCTTTATTGGCTGA 58.521 39.130 0.00 0.00 41.38 4.26
2860 2973 4.898861 AGTGGTTTTCCTTTATTGGCTGAA 59.101 37.500 0.00 0.00 41.38 3.02
2861 2974 5.365314 AGTGGTTTTCCTTTATTGGCTGAAA 59.635 36.000 0.00 0.00 41.38 2.69
2862 2975 5.465390 GTGGTTTTCCTTTATTGGCTGAAAC 59.535 40.000 0.00 0.00 41.38 2.78
2863 2976 5.129485 TGGTTTTCCTTTATTGGCTGAAACA 59.871 36.000 0.00 0.00 41.38 2.83
2864 2977 6.183361 TGGTTTTCCTTTATTGGCTGAAACAT 60.183 34.615 0.00 0.00 41.38 2.71
2865 2978 7.015682 TGGTTTTCCTTTATTGGCTGAAACATA 59.984 33.333 0.00 0.00 41.38 2.29
2866 2979 7.545615 GGTTTTCCTTTATTGGCTGAAACATAG 59.454 37.037 0.00 0.00 36.94 2.23
2867 2980 7.775053 TTTCCTTTATTGGCTGAAACATAGT 57.225 32.000 0.00 0.00 0.00 2.12
2876 2989 6.079424 TGGCTGAAACATAGTTTTACAACC 57.921 37.500 0.00 0.00 32.70 3.77
2893 3006 7.983166 TTACAACCTATAATGTACACCCTCT 57.017 36.000 0.00 0.00 32.07 3.69
2894 3007 6.235231 ACAACCTATAATGTACACCCTCTG 57.765 41.667 0.00 0.00 0.00 3.35
2905 3018 7.691993 ATGTACACCCTCTGTTCCTAAATAT 57.308 36.000 0.00 0.00 33.91 1.28
2906 3019 8.792830 ATGTACACCCTCTGTTCCTAAATATA 57.207 34.615 0.00 0.00 33.91 0.86
2907 3020 8.612486 TGTACACCCTCTGTTCCTAAATATAA 57.388 34.615 0.00 0.00 33.91 0.98
2909 3022 7.989947 ACACCCTCTGTTCCTAAATATAAGA 57.010 36.000 0.00 0.00 0.00 2.10
2910 3023 7.793036 ACACCCTCTGTTCCTAAATATAAGAC 58.207 38.462 0.00 0.00 0.00 3.01
2911 3024 6.924060 CACCCTCTGTTCCTAAATATAAGACG 59.076 42.308 0.00 0.00 0.00 4.18
2914 3027 7.985752 CCCTCTGTTCCTAAATATAAGACGTTT 59.014 37.037 0.00 0.00 0.00 3.60
2918 3031 7.754625 TGTTCCTAAATATAAGACGTTTTGGC 58.245 34.615 0.83 0.00 30.97 4.52
2919 3032 7.390996 TGTTCCTAAATATAAGACGTTTTGGCA 59.609 33.333 0.83 0.00 30.97 4.92
2920 3033 7.548196 TCCTAAATATAAGACGTTTTGGCAG 57.452 36.000 0.83 0.00 30.97 4.85
2923 3036 7.908601 CCTAAATATAAGACGTTTTGGCAGTTC 59.091 37.037 0.83 0.00 0.00 3.01
2924 3037 6.811253 AATATAAGACGTTTTGGCAGTTCA 57.189 33.333 0.83 0.00 0.00 3.18
2926 3039 5.705609 ATAAGACGTTTTGGCAGTTCAAT 57.294 34.783 0.83 0.00 0.00 2.57
2927 3040 4.385358 AAGACGTTTTGGCAGTTCAATT 57.615 36.364 0.00 0.00 0.00 2.32
2929 3042 5.508200 AGACGTTTTGGCAGTTCAATTTA 57.492 34.783 0.00 0.00 0.00 1.40
2931 3044 5.977129 AGACGTTTTGGCAGTTCAATTTAAG 59.023 36.000 0.00 0.00 0.00 1.85
2932 3045 4.506288 ACGTTTTGGCAGTTCAATTTAAGC 59.494 37.500 0.00 0.00 0.00 3.09
2933 3046 4.744631 CGTTTTGGCAGTTCAATTTAAGCT 59.255 37.500 0.00 0.00 0.00 3.74
2934 3047 5.332506 CGTTTTGGCAGTTCAATTTAAGCTG 60.333 40.000 0.00 0.00 0.00 4.24
2937 3050 3.302365 GCAGTTCAATTTAAGCTGCCA 57.698 42.857 12.76 0.00 44.61 4.92
2939 3052 4.057432 GCAGTTCAATTTAAGCTGCCAAA 58.943 39.130 12.76 0.00 44.61 3.28
2943 3056 4.314740 TCAATTTAAGCTGCCAAAACGT 57.685 36.364 0.00 0.00 0.00 3.99
2944 3057 4.688021 TCAATTTAAGCTGCCAAAACGTT 58.312 34.783 0.00 0.00 0.00 3.99
2946 3059 5.582665 TCAATTTAAGCTGCCAAAACGTTTT 59.417 32.000 20.26 20.26 0.00 2.43
2947 3060 6.757010 TCAATTTAAGCTGCCAAAACGTTTTA 59.243 30.769 24.79 9.98 0.00 1.52
2948 3061 7.439655 TCAATTTAAGCTGCCAAAACGTTTTAT 59.560 29.630 24.79 8.93 0.00 1.40
2949 3062 8.704234 CAATTTAAGCTGCCAAAACGTTTTATA 58.296 29.630 24.79 13.28 0.00 0.98
2950 3063 7.626144 TTTAAGCTGCCAAAACGTTTTATAC 57.374 32.000 24.79 16.92 0.00 1.47
2951 3064 4.839668 AGCTGCCAAAACGTTTTATACA 57.160 36.364 24.79 20.01 0.00 2.29
2952 3065 4.794169 AGCTGCCAAAACGTTTTATACAG 58.206 39.130 28.14 28.14 31.84 2.74
2953 3066 4.277423 AGCTGCCAAAACGTTTTATACAGT 59.723 37.500 30.15 21.58 31.56 3.55
2954 3067 4.979815 GCTGCCAAAACGTTTTATACAGTT 59.020 37.500 30.15 10.37 31.56 3.16
2957 3070 6.561614 TGCCAAAACGTTTTATACAGTTCAA 58.438 32.000 24.79 1.15 0.00 2.69
2958 3071 7.203910 TGCCAAAACGTTTTATACAGTTCAAT 58.796 30.769 24.79 0.00 0.00 2.57
2964 3077 8.959734 AACGTTTTATACAGTTCAATTTAGGC 57.040 30.769 0.00 0.00 0.00 3.93
2965 3078 8.331730 ACGTTTTATACAGTTCAATTTAGGCT 57.668 30.769 0.00 0.00 0.00 4.58
2967 3080 7.218204 CGTTTTATACAGTTCAATTTAGGCTGC 59.782 37.037 0.00 0.00 0.00 5.25
2968 3081 6.693315 TTATACAGTTCAATTTAGGCTGCC 57.307 37.500 11.65 11.65 0.00 4.85
2969 3082 2.875296 ACAGTTCAATTTAGGCTGCCA 58.125 42.857 22.65 3.92 0.00 4.92
2971 3084 3.640967 ACAGTTCAATTTAGGCTGCCAAA 59.359 39.130 22.65 18.21 0.00 3.28
2973 3086 4.448732 CAGTTCAATTTAGGCTGCCAAAAC 59.551 41.667 22.65 12.92 0.00 2.43
2974 3087 3.296322 TCAATTTAGGCTGCCAAAACG 57.704 42.857 22.65 13.26 0.00 3.60
2975 3088 2.625790 TCAATTTAGGCTGCCAAAACGT 59.374 40.909 22.65 0.61 0.00 3.99
2976 3089 2.986479 CAATTTAGGCTGCCAAAACGTC 59.014 45.455 22.65 0.00 0.00 4.34
2977 3090 1.975660 TTTAGGCTGCCAAAACGTCT 58.024 45.000 22.65 0.00 0.00 4.18
2979 3092 2.843401 TAGGCTGCCAAAACGTCTTA 57.157 45.000 22.65 0.00 0.00 2.10
2987 3147 6.037830 GGCTGCCAAAACGTCTTATATTTAGA 59.962 38.462 15.17 0.00 0.00 2.10
2991 3151 8.784994 TGCCAAAACGTCTTATATTTAGAAACA 58.215 29.630 0.00 0.00 0.00 2.83
2993 3153 9.274065 CCAAAACGTCTTATATTTAGAAACAGC 57.726 33.333 0.00 0.00 0.00 4.40
2995 3155 7.823149 AACGTCTTATATTTAGAAACAGCGT 57.177 32.000 0.00 0.00 0.00 5.07
2996 3156 7.823149 ACGTCTTATATTTAGAAACAGCGTT 57.177 32.000 0.00 0.00 0.00 4.84
2998 3158 9.357652 ACGTCTTATATTTAGAAACAGCGTTAA 57.642 29.630 0.00 0.00 0.00 2.01
3008 3168 6.007936 AGAAACAGCGTTAATACAATGCAA 57.992 33.333 0.00 0.00 34.74 4.08
3026 3186 2.616510 GCAATAGCAACAGGACAGGACT 60.617 50.000 0.00 0.00 41.58 3.85
3027 3187 3.265791 CAATAGCAACAGGACAGGACTC 58.734 50.000 0.00 0.00 0.00 3.36
3033 3247 1.343069 ACAGGACAGGACTCCTCAAC 58.657 55.000 0.00 0.00 38.77 3.18
3034 3248 0.610687 CAGGACAGGACTCCTCAACC 59.389 60.000 0.00 0.00 38.77 3.77
3044 3258 2.569404 GACTCCTCAACCTCAGGAATGT 59.431 50.000 0.00 0.00 39.69 2.71
3051 3265 3.136443 TCAACCTCAGGAATGTTCTGTGT 59.864 43.478 0.00 0.00 34.15 3.72
3056 3278 4.878397 CCTCAGGAATGTTCTGTGTATTCC 59.122 45.833 0.00 0.00 46.50 3.01
3060 3282 3.871594 GGAATGTTCTGTGTATTCCGGAG 59.128 47.826 3.34 0.00 40.12 4.63
3073 3295 4.277552 CGGAGGGAGCTGACCATA 57.722 61.111 6.80 0.00 0.00 2.74
3149 3371 2.650163 CGACCTCGTTGAACCGATC 58.350 57.895 0.00 0.00 36.08 3.69
3250 3472 7.564793 ACCATCATAAGCACACTAGTAATCAA 58.435 34.615 0.00 0.00 0.00 2.57
3269 3494 1.549203 AACAAGGGGTTATGCTGCAG 58.451 50.000 10.11 10.11 38.15 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 9.769677 AGTTGGGAGCACTGATATATACTTATA 57.230 33.333 0.00 0.00 0.00 0.98
22 23 8.671987 AGTTGGGAGCACTGATATATACTTAT 57.328 34.615 0.00 0.00 0.00 1.73
23 24 7.178628 GGAGTTGGGAGCACTGATATATACTTA 59.821 40.741 0.00 0.00 0.00 2.24
24 25 6.014156 GGAGTTGGGAGCACTGATATATACTT 60.014 42.308 0.00 0.00 0.00 2.24
25 26 5.482175 GGAGTTGGGAGCACTGATATATACT 59.518 44.000 0.00 0.00 0.00 2.12
26 27 5.337652 GGGAGTTGGGAGCACTGATATATAC 60.338 48.000 0.00 0.00 0.00 1.47
27 28 4.777896 GGGAGTTGGGAGCACTGATATATA 59.222 45.833 0.00 0.00 0.00 0.86
28 29 3.584848 GGGAGTTGGGAGCACTGATATAT 59.415 47.826 0.00 0.00 0.00 0.86
29 30 2.972713 GGGAGTTGGGAGCACTGATATA 59.027 50.000 0.00 0.00 0.00 0.86
30 31 1.771255 GGGAGTTGGGAGCACTGATAT 59.229 52.381 0.00 0.00 0.00 1.63
31 32 1.204146 GGGAGTTGGGAGCACTGATA 58.796 55.000 0.00 0.00 0.00 2.15
32 33 0.842030 TGGGAGTTGGGAGCACTGAT 60.842 55.000 0.00 0.00 0.00 2.90
33 34 1.059584 TTGGGAGTTGGGAGCACTGA 61.060 55.000 0.00 0.00 0.00 3.41
34 35 0.607489 CTTGGGAGTTGGGAGCACTG 60.607 60.000 0.00 0.00 0.00 3.66
35 36 1.763770 CTTGGGAGTTGGGAGCACT 59.236 57.895 0.00 0.00 0.00 4.40
36 37 1.303643 CCTTGGGAGTTGGGAGCAC 60.304 63.158 0.00 0.00 0.00 4.40
37 38 0.846427 ATCCTTGGGAGTTGGGAGCA 60.846 55.000 0.00 0.00 34.05 4.26
38 39 0.394899 CATCCTTGGGAGTTGGGAGC 60.395 60.000 0.00 0.00 34.05 4.70
39 40 0.995024 ACATCCTTGGGAGTTGGGAG 59.005 55.000 0.00 0.00 34.05 4.30
40 41 0.698238 CACATCCTTGGGAGTTGGGA 59.302 55.000 0.00 0.00 34.05 4.37
41 42 0.967380 GCACATCCTTGGGAGTTGGG 60.967 60.000 0.00 0.00 34.05 4.12
42 43 0.251297 TGCACATCCTTGGGAGTTGG 60.251 55.000 0.00 0.00 34.05 3.77
43 44 1.270550 GTTGCACATCCTTGGGAGTTG 59.729 52.381 0.00 0.00 34.05 3.16
44 45 1.145738 AGTTGCACATCCTTGGGAGTT 59.854 47.619 0.00 0.00 34.05 3.01
45 46 0.773644 AGTTGCACATCCTTGGGAGT 59.226 50.000 0.00 0.00 34.05 3.85
46 47 2.290260 TGTAGTTGCACATCCTTGGGAG 60.290 50.000 0.00 0.00 34.05 4.30
47 48 1.702401 TGTAGTTGCACATCCTTGGGA 59.298 47.619 0.00 0.00 35.55 4.37
48 49 1.812571 GTGTAGTTGCACATCCTTGGG 59.187 52.381 0.00 0.00 39.07 4.12
49 50 2.485426 CTGTGTAGTTGCACATCCTTGG 59.515 50.000 3.54 0.00 46.65 3.61
50 51 2.485426 CCTGTGTAGTTGCACATCCTTG 59.515 50.000 3.54 0.00 46.65 3.61
51 52 2.106511 ACCTGTGTAGTTGCACATCCTT 59.893 45.455 3.54 0.00 46.65 3.36
52 53 1.699634 ACCTGTGTAGTTGCACATCCT 59.300 47.619 3.54 0.00 46.65 3.24
53 54 1.806542 CACCTGTGTAGTTGCACATCC 59.193 52.381 3.54 0.00 46.65 3.51
54 55 1.197721 GCACCTGTGTAGTTGCACATC 59.802 52.381 3.54 0.00 46.65 3.06
55 56 1.238439 GCACCTGTGTAGTTGCACAT 58.762 50.000 3.54 0.00 46.65 3.21
56 57 0.107459 TGCACCTGTGTAGTTGCACA 60.107 50.000 3.12 3.12 45.85 4.57
57 58 0.588252 CTGCACCTGTGTAGTTGCAC 59.412 55.000 7.16 0.00 38.30 4.57
58 59 3.005205 CTGCACCTGTGTAGTTGCA 57.995 52.632 7.16 0.00 38.30 4.08
63 64 2.058798 CGTAACACTGCACCTGTGTAG 58.941 52.381 12.93 12.93 43.68 2.74
64 65 1.409790 ACGTAACACTGCACCTGTGTA 59.590 47.619 10.29 0.00 43.68 2.90
65 66 0.177141 ACGTAACACTGCACCTGTGT 59.823 50.000 4.49 4.49 45.72 3.72
66 67 0.581529 CACGTAACACTGCACCTGTG 59.418 55.000 3.20 3.20 38.85 3.66
67 68 1.157870 GCACGTAACACTGCACCTGT 61.158 55.000 0.00 0.00 33.31 4.00
68 69 0.880278 AGCACGTAACACTGCACCTG 60.880 55.000 0.00 0.00 35.73 4.00
69 70 0.179056 AAGCACGTAACACTGCACCT 60.179 50.000 0.00 0.00 35.73 4.00
70 71 0.041312 CAAGCACGTAACACTGCACC 60.041 55.000 0.00 0.00 35.73 5.01
71 72 0.655733 ACAAGCACGTAACACTGCAC 59.344 50.000 0.00 0.00 35.73 4.57
72 73 1.374560 AACAAGCACGTAACACTGCA 58.625 45.000 0.00 0.00 35.73 4.41
73 74 2.108700 CAAACAAGCACGTAACACTGC 58.891 47.619 0.00 0.00 0.00 4.40
74 75 3.063452 ACTCAAACAAGCACGTAACACTG 59.937 43.478 0.00 0.00 0.00 3.66
75 76 3.267483 ACTCAAACAAGCACGTAACACT 58.733 40.909 0.00 0.00 0.00 3.55
76 77 3.668596 ACTCAAACAAGCACGTAACAC 57.331 42.857 0.00 0.00 0.00 3.32
77 78 4.688511 AAACTCAAACAAGCACGTAACA 57.311 36.364 0.00 0.00 0.00 2.41
78 79 5.798434 AGAAAAACTCAAACAAGCACGTAAC 59.202 36.000 0.00 0.00 0.00 2.50
79 80 5.945155 AGAAAAACTCAAACAAGCACGTAA 58.055 33.333 0.00 0.00 0.00 3.18
80 81 5.554822 AGAAAAACTCAAACAAGCACGTA 57.445 34.783 0.00 0.00 0.00 3.57
81 82 4.434713 AGAAAAACTCAAACAAGCACGT 57.565 36.364 0.00 0.00 0.00 4.49
82 83 5.541008 CAAAGAAAAACTCAAACAAGCACG 58.459 37.500 0.00 0.00 0.00 5.34
83 84 5.107143 TGCAAAGAAAAACTCAAACAAGCAC 60.107 36.000 0.00 0.00 0.00 4.40
84 85 4.993584 TGCAAAGAAAAACTCAAACAAGCA 59.006 33.333 0.00 0.00 0.00 3.91
85 86 5.120674 ACTGCAAAGAAAAACTCAAACAAGC 59.879 36.000 0.00 0.00 0.00 4.01
86 87 6.146021 ACACTGCAAAGAAAAACTCAAACAAG 59.854 34.615 0.00 0.00 0.00 3.16
87 88 5.988561 ACACTGCAAAGAAAAACTCAAACAA 59.011 32.000 0.00 0.00 0.00 2.83
88 89 5.537188 ACACTGCAAAGAAAAACTCAAACA 58.463 33.333 0.00 0.00 0.00 2.83
89 90 6.298853 CAACACTGCAAAGAAAAACTCAAAC 58.701 36.000 0.00 0.00 0.00 2.93
90 91 6.464895 CAACACTGCAAAGAAAAACTCAAA 57.535 33.333 0.00 0.00 0.00 2.69
106 107 3.441496 AACAATGGACTTGCAACACTG 57.559 42.857 0.00 0.00 38.50 3.66
107 108 4.470334 AAAACAATGGACTTGCAACACT 57.530 36.364 0.00 0.00 38.50 3.55
108 109 6.843069 ATAAAAACAATGGACTTGCAACAC 57.157 33.333 0.00 0.00 38.50 3.32
109 110 7.856145 AAATAAAAACAATGGACTTGCAACA 57.144 28.000 0.00 0.00 38.50 3.33
156 157 7.887381 TGTTGTATCGGATTACCAATGTTTTT 58.113 30.769 0.00 0.00 35.59 1.94
157 158 7.455641 TGTTGTATCGGATTACCAATGTTTT 57.544 32.000 0.00 0.00 35.59 2.43
158 159 7.639113 ATGTTGTATCGGATTACCAATGTTT 57.361 32.000 0.00 0.00 35.59 2.83
159 160 7.639113 AATGTTGTATCGGATTACCAATGTT 57.361 32.000 0.00 0.00 35.59 2.71
160 161 7.639113 AAATGTTGTATCGGATTACCAATGT 57.361 32.000 0.00 0.00 35.59 2.71
161 162 7.973388 ACAAAATGTTGTATCGGATTACCAATG 59.027 33.333 0.00 0.00 46.33 2.82
162 163 8.062065 ACAAAATGTTGTATCGGATTACCAAT 57.938 30.769 0.00 0.00 46.33 3.16
163 164 7.455641 ACAAAATGTTGTATCGGATTACCAA 57.544 32.000 0.00 0.00 46.33 3.67
164 165 7.825270 ACTACAAAATGTTGTATCGGATTACCA 59.175 33.333 8.94 0.00 46.57 3.25
165 166 8.205131 ACTACAAAATGTTGTATCGGATTACC 57.795 34.615 8.94 0.00 46.57 2.85
170 171 9.221933 ACATAAACTACAAAATGTTGTATCGGA 57.778 29.630 8.94 0.00 46.57 4.55
199 200 5.010719 ACGGAACTCACTTGTCTTCATTAGA 59.989 40.000 0.00 0.00 0.00 2.10
200 201 5.230942 ACGGAACTCACTTGTCTTCATTAG 58.769 41.667 0.00 0.00 0.00 1.73
201 202 5.209818 ACGGAACTCACTTGTCTTCATTA 57.790 39.130 0.00 0.00 0.00 1.90
202 203 4.073293 ACGGAACTCACTTGTCTTCATT 57.927 40.909 0.00 0.00 0.00 2.57
203 204 3.753294 ACGGAACTCACTTGTCTTCAT 57.247 42.857 0.00 0.00 0.00 2.57
204 205 3.194861 CAACGGAACTCACTTGTCTTCA 58.805 45.455 0.00 0.00 0.00 3.02
205 206 2.544267 CCAACGGAACTCACTTGTCTTC 59.456 50.000 0.00 0.00 0.00 2.87
206 207 2.561569 CCAACGGAACTCACTTGTCTT 58.438 47.619 0.00 0.00 0.00 3.01
207 208 1.810412 GCCAACGGAACTCACTTGTCT 60.810 52.381 0.00 0.00 0.00 3.41
208 209 0.586802 GCCAACGGAACTCACTTGTC 59.413 55.000 0.00 0.00 0.00 3.18
209 210 0.180406 AGCCAACGGAACTCACTTGT 59.820 50.000 0.00 0.00 0.00 3.16
210 211 2.163818 TAGCCAACGGAACTCACTTG 57.836 50.000 0.00 0.00 0.00 3.16
211 212 2.876550 GTTTAGCCAACGGAACTCACTT 59.123 45.455 0.00 0.00 0.00 3.16
212 213 2.490991 GTTTAGCCAACGGAACTCACT 58.509 47.619 0.00 0.00 0.00 3.41
213 214 1.534163 GGTTTAGCCAACGGAACTCAC 59.466 52.381 0.00 0.00 36.05 3.51
214 215 1.543871 GGGTTTAGCCAACGGAACTCA 60.544 52.381 0.00 0.00 39.65 3.41
215 216 1.162698 GGGTTTAGCCAACGGAACTC 58.837 55.000 0.00 0.00 39.65 3.01
216 217 0.769247 AGGGTTTAGCCAACGGAACT 59.231 50.000 0.26 0.00 39.65 3.01
217 218 1.612676 AAGGGTTTAGCCAACGGAAC 58.387 50.000 0.26 0.00 39.65 3.62
218 219 2.368311 AAAGGGTTTAGCCAACGGAA 57.632 45.000 0.26 0.00 39.65 4.30
219 220 3.062122 CTAAAGGGTTTAGCCAACGGA 57.938 47.619 0.26 0.00 36.54 4.69
252 253 1.658686 TTGCCACCACGCGACTTTTT 61.659 50.000 15.93 0.00 0.00 1.94
253 254 1.658686 TTTGCCACCACGCGACTTTT 61.659 50.000 15.93 0.00 0.00 2.27
254 255 2.058829 CTTTGCCACCACGCGACTTT 62.059 55.000 15.93 0.00 0.00 2.66
255 256 2.515057 TTTGCCACCACGCGACTT 60.515 55.556 15.93 0.00 0.00 3.01
256 257 2.933878 TTCTTTGCCACCACGCGACT 62.934 55.000 15.93 0.00 0.00 4.18
257 258 2.443957 CTTCTTTGCCACCACGCGAC 62.444 60.000 15.93 0.00 0.00 5.19
258 259 2.203084 TTCTTTGCCACCACGCGA 60.203 55.556 15.93 0.00 0.00 5.87
259 260 1.577328 ATCTTCTTTGCCACCACGCG 61.577 55.000 3.53 3.53 0.00 6.01
260 261 1.398390 CTATCTTCTTTGCCACCACGC 59.602 52.381 0.00 0.00 0.00 5.34
261 262 2.699954 ACTATCTTCTTTGCCACCACG 58.300 47.619 0.00 0.00 0.00 4.94
278 279 2.297698 TCTTCCCCTCACACGAACTA 57.702 50.000 0.00 0.00 0.00 2.24
365 366 8.793592 GTTGATCTTGGGTGTAGATTTAGTTTT 58.206 33.333 0.00 0.00 32.64 2.43
464 465 2.865119 ATGACAGCATCACAAGACCA 57.135 45.000 0.00 0.00 41.24 4.02
519 520 5.357032 TCAGCTACATGTTCTAATCTCGTCA 59.643 40.000 2.30 0.00 0.00 4.35
521 522 5.836821 TCAGCTACATGTTCTAATCTCGT 57.163 39.130 2.30 0.00 0.00 4.18
697 699 9.920133 ATCTACTAGATAACTACGACATTCGTA 57.080 33.333 8.09 8.09 41.59 3.43
778 780 0.749649 CGTCTCCATCTAGCCAGCTT 59.250 55.000 0.00 0.00 0.00 3.74
793 797 7.361127 CAACGAGATGGATTATTAGTACGTCT 58.639 38.462 0.00 0.00 0.00 4.18
840 846 1.901833 TCTGCCAGCAGACTCACAATA 59.098 47.619 18.14 0.00 46.80 1.90
915 921 6.919721 TCCTTTGCTATTAATTTTGCGACTT 58.080 32.000 0.00 0.00 0.00 3.01
916 922 6.509418 TCCTTTGCTATTAATTTTGCGACT 57.491 33.333 0.00 0.00 0.00 4.18
917 923 7.755582 ATTCCTTTGCTATTAATTTTGCGAC 57.244 32.000 0.00 0.00 0.00 5.19
918 924 8.031864 TCAATTCCTTTGCTATTAATTTTGCGA 58.968 29.630 0.00 0.00 35.16 5.10
919 925 8.183830 TCAATTCCTTTGCTATTAATTTTGCG 57.816 30.769 0.00 0.00 35.16 4.85
920 926 9.154847 ACTCAATTCCTTTGCTATTAATTTTGC 57.845 29.630 0.00 0.00 35.16 3.68
926 932 9.834628 CGTAAAACTCAATTCCTTTGCTATTAA 57.165 29.630 0.00 0.00 35.16 1.40
927 933 7.966204 GCGTAAAACTCAATTCCTTTGCTATTA 59.034 33.333 0.00 0.00 35.16 0.98
928 934 6.806739 GCGTAAAACTCAATTCCTTTGCTATT 59.193 34.615 0.00 0.00 35.16 1.73
929 935 6.072175 TGCGTAAAACTCAATTCCTTTGCTAT 60.072 34.615 0.00 0.00 35.16 2.97
930 936 5.239744 TGCGTAAAACTCAATTCCTTTGCTA 59.760 36.000 0.00 0.00 35.16 3.49
931 937 4.037446 TGCGTAAAACTCAATTCCTTTGCT 59.963 37.500 0.00 0.00 35.16 3.91
932 938 4.295051 TGCGTAAAACTCAATTCCTTTGC 58.705 39.130 0.00 0.00 35.16 3.68
972 978 7.571919 TCAAATTTGCTAGAGATCCTCAGAAT 58.428 34.615 13.54 0.00 32.06 2.40
975 981 8.899427 TTATCAAATTTGCTAGAGATCCTCAG 57.101 34.615 13.54 0.00 32.06 3.35
987 993 5.180271 CCTTGTGGCATTATCAAATTTGCT 58.820 37.500 13.54 6.53 35.46 3.91
1168 1179 4.008933 GGCGAGCAGGAGTGGTGT 62.009 66.667 0.00 0.00 33.41 4.16
1173 1184 3.812019 CGTACGGCGAGCAGGAGT 61.812 66.667 16.62 0.00 44.77 3.85
1356 1367 2.159382 CCACTAGGGCGTGAATGTTTT 58.841 47.619 0.00 0.00 37.06 2.43
1361 1372 0.978146 AGCTCCACTAGGGCGTGAAT 60.978 55.000 0.00 0.00 37.06 2.57
1408 1419 2.260434 GCCTACGGCGTCAGTTCA 59.740 61.111 19.21 0.00 39.62 3.18
1436 1447 1.685077 CCTCCTGCTCTGCTCCTCA 60.685 63.158 0.00 0.00 0.00 3.86
1663 1674 4.612536 GTGTGTGGCTGTGTGCGC 62.613 66.667 0.00 0.00 44.05 6.09
1664 1675 2.062361 AATGTGTGTGGCTGTGTGCG 62.062 55.000 0.00 0.00 44.05 5.34
1665 1676 0.595567 CAATGTGTGTGGCTGTGTGC 60.596 55.000 0.00 0.00 41.94 4.57
1666 1677 0.595567 GCAATGTGTGTGGCTGTGTG 60.596 55.000 0.00 0.00 0.00 3.82
1667 1678 1.036481 TGCAATGTGTGTGGCTGTGT 61.036 50.000 0.00 0.00 0.00 3.72
1668 1679 0.102663 TTGCAATGTGTGTGGCTGTG 59.897 50.000 0.00 0.00 0.00 3.66
1669 1680 0.822811 TTTGCAATGTGTGTGGCTGT 59.177 45.000 0.00 0.00 0.00 4.40
1670 1681 1.202440 AGTTTGCAATGTGTGTGGCTG 60.202 47.619 0.00 0.00 0.00 4.85
1671 1682 1.113788 AGTTTGCAATGTGTGTGGCT 58.886 45.000 0.00 0.00 0.00 4.75
1672 1683 1.210870 CAGTTTGCAATGTGTGTGGC 58.789 50.000 0.00 0.00 0.00 5.01
1673 1684 2.582728 ACAGTTTGCAATGTGTGTGG 57.417 45.000 12.18 0.00 0.00 4.17
1674 1685 4.734854 GTCTTACAGTTTGCAATGTGTGTG 59.265 41.667 19.47 13.36 0.00 3.82
1675 1686 4.495679 CGTCTTACAGTTTGCAATGTGTGT 60.496 41.667 19.47 13.78 0.00 3.72
1676 1687 3.968096 CGTCTTACAGTTTGCAATGTGTG 59.032 43.478 19.47 10.87 0.00 3.82
1728 1748 0.804364 TTGGTCTGACGCATCATTGC 59.196 50.000 1.07 0.00 45.78 3.56
1828 1852 2.806818 CTCTGAATCATCCGATGCAAGG 59.193 50.000 3.25 5.31 36.70 3.61
1829 1853 3.725490 TCTCTGAATCATCCGATGCAAG 58.275 45.455 3.25 0.00 36.70 4.01
1836 1860 3.551046 CCCTACGTTCTCTGAATCATCCG 60.551 52.174 0.00 0.00 0.00 4.18
1940 1972 3.879351 CTTTTGCACTGTCGCGCCC 62.879 63.158 0.00 0.00 33.35 6.13
1976 2013 1.280066 AACTGTACGCACGTTTCGTT 58.720 45.000 16.28 0.00 38.32 3.85
1980 2017 1.371595 ACCAAACTGTACGCACGTTT 58.628 45.000 0.00 3.84 34.19 3.60
1984 2021 1.862411 GCCAAACCAAACTGTACGCAC 60.862 52.381 0.00 0.00 0.00 5.34
1985 2022 0.382515 GCCAAACCAAACTGTACGCA 59.617 50.000 0.00 0.00 0.00 5.24
1986 2023 0.659123 CGCCAAACCAAACTGTACGC 60.659 55.000 0.00 0.00 0.00 4.42
2004 2041 5.207768 CCACAAAACATCTTCAGAAAGTCG 58.792 41.667 0.00 0.00 33.95 4.18
2174 2212 3.379445 GGACGCGGTCTTCTGGGA 61.379 66.667 12.47 0.00 36.81 4.37
2294 2335 7.293018 CAAGAAAATGGTAAGAAAATTGCAGC 58.707 34.615 0.00 0.00 0.00 5.25
2305 2347 4.858692 CGGTTGATGCAAGAAAATGGTAAG 59.141 41.667 0.00 0.00 0.00 2.34
2306 2348 4.321601 CCGGTTGATGCAAGAAAATGGTAA 60.322 41.667 0.00 0.00 0.00 2.85
2307 2349 3.192422 CCGGTTGATGCAAGAAAATGGTA 59.808 43.478 0.00 0.00 0.00 3.25
2308 2350 2.029110 CCGGTTGATGCAAGAAAATGGT 60.029 45.455 0.00 0.00 0.00 3.55
2309 2351 2.609350 CCGGTTGATGCAAGAAAATGG 58.391 47.619 0.00 0.00 0.00 3.16
2310 2352 1.994779 GCCGGTTGATGCAAGAAAATG 59.005 47.619 1.90 0.00 0.00 2.32
2311 2353 1.895131 AGCCGGTTGATGCAAGAAAAT 59.105 42.857 1.90 0.00 0.00 1.82
2312 2354 1.000385 CAGCCGGTTGATGCAAGAAAA 60.000 47.619 13.89 0.00 0.00 2.29
2313 2355 0.597568 CAGCCGGTTGATGCAAGAAA 59.402 50.000 13.89 0.00 0.00 2.52
2314 2356 0.537143 ACAGCCGGTTGATGCAAGAA 60.537 50.000 26.33 0.00 0.00 2.52
2315 2357 0.955428 GACAGCCGGTTGATGCAAGA 60.955 55.000 26.33 0.00 0.00 3.02
2316 2358 1.236616 TGACAGCCGGTTGATGCAAG 61.237 55.000 26.33 0.00 0.00 4.01
2317 2359 0.821301 TTGACAGCCGGTTGATGCAA 60.821 50.000 26.33 20.45 0.00 4.08
2318 2360 0.821301 TTTGACAGCCGGTTGATGCA 60.821 50.000 26.33 16.00 0.00 3.96
2319 2361 0.387239 GTTTGACAGCCGGTTGATGC 60.387 55.000 26.33 13.62 0.00 3.91
2320 2362 0.110238 CGTTTGACAGCCGGTTGATG 60.110 55.000 26.33 10.75 0.00 3.07
2321 2363 1.852067 GCGTTTGACAGCCGGTTGAT 61.852 55.000 26.33 9.23 0.00 2.57
2322 2364 2.539338 GCGTTTGACAGCCGGTTGA 61.539 57.895 26.33 0.00 0.00 3.18
2323 2365 2.051345 GCGTTTGACAGCCGGTTG 60.051 61.111 17.70 17.70 0.00 3.77
2324 2366 1.452145 ATTGCGTTTGACAGCCGGTT 61.452 50.000 1.90 0.00 0.00 4.44
2325 2367 1.452145 AATTGCGTTTGACAGCCGGT 61.452 50.000 1.90 0.00 0.00 5.28
2326 2368 0.318614 AAATTGCGTTTGACAGCCGG 60.319 50.000 0.00 0.00 0.00 6.13
2327 2369 1.189884 CAAAATTGCGTTTGACAGCCG 59.810 47.619 2.10 0.00 40.29 5.52
2328 2370 1.526464 CCAAAATTGCGTTTGACAGCC 59.474 47.619 8.45 0.00 40.29 4.85
2329 2371 1.070643 GCCAAAATTGCGTTTGACAGC 60.071 47.619 8.45 1.69 40.29 4.40
2330 2372 1.189884 CGCCAAAATTGCGTTTGACAG 59.810 47.619 8.45 0.00 46.59 3.51
2331 2373 1.203928 CGCCAAAATTGCGTTTGACA 58.796 45.000 8.45 0.00 46.59 3.58
2332 2374 3.996017 CGCCAAAATTGCGTTTGAC 57.004 47.368 8.45 0.00 46.59 3.18
2339 2381 1.006337 TGGAGCACGCCAAAATTGC 60.006 52.632 0.00 0.00 34.31 3.56
2340 2382 0.031857 TGTGGAGCACGCCAAAATTG 59.968 50.000 0.00 0.00 40.20 2.32
2341 2383 0.749649 TTGTGGAGCACGCCAAAATT 59.250 45.000 0.00 0.00 40.20 1.82
2342 2384 0.031994 GTTGTGGAGCACGCCAAAAT 59.968 50.000 0.00 0.00 37.48 1.82
2343 2385 1.435515 GTTGTGGAGCACGCCAAAA 59.564 52.632 0.00 0.00 40.20 2.44
2344 2386 2.485795 GGTTGTGGAGCACGCCAAA 61.486 57.895 0.00 0.00 40.20 3.28
2349 2391 0.950836 TTTGATGGTTGTGGAGCACG 59.049 50.000 0.00 0.00 38.83 5.34
2358 2400 4.213270 ACGACAGTACACATTTGATGGTTG 59.787 41.667 0.00 0.00 33.60 3.77
2424 2472 5.006153 TGGTTCCTCTACATACACATTCG 57.994 43.478 0.00 0.00 0.00 3.34
2495 2546 5.291178 TGATTTCCACAAGCAATCAACAAG 58.709 37.500 0.00 0.00 34.66 3.16
2517 2568 6.015519 TCCCTAGAAACATGGACATTTGTTTG 60.016 38.462 8.32 0.00 43.95 2.93
2525 2576 2.838202 GGACTCCCTAGAAACATGGACA 59.162 50.000 0.00 0.00 0.00 4.02
2526 2577 2.838202 TGGACTCCCTAGAAACATGGAC 59.162 50.000 0.00 0.00 0.00 4.02
2527 2578 2.838202 GTGGACTCCCTAGAAACATGGA 59.162 50.000 0.00 0.00 0.00 3.41
2530 2581 6.831664 ATTATGTGGACTCCCTAGAAACAT 57.168 37.500 0.00 0.00 32.41 2.71
2531 2582 7.567250 TCATATTATGTGGACTCCCTAGAAACA 59.433 37.037 3.67 0.00 0.00 2.83
2532 2583 7.873505 GTCATATTATGTGGACTCCCTAGAAAC 59.126 40.741 3.67 0.00 0.00 2.78
2539 2590 7.823745 ATTTTGTCATATTATGTGGACTCCC 57.176 36.000 3.67 0.00 0.00 4.30
2540 2591 7.649306 GCAATTTTGTCATATTATGTGGACTCC 59.351 37.037 3.67 0.00 0.00 3.85
2541 2592 8.408601 AGCAATTTTGTCATATTATGTGGACTC 58.591 33.333 3.67 0.00 0.00 3.36
2543 2594 8.190122 TGAGCAATTTTGTCATATTATGTGGAC 58.810 33.333 3.67 0.00 0.00 4.02
2544 2595 8.291191 TGAGCAATTTTGTCATATTATGTGGA 57.709 30.769 3.67 0.00 0.00 4.02
2545 2596 8.929827 TTGAGCAATTTTGTCATATTATGTGG 57.070 30.769 3.67 0.00 0.00 4.17
2555 2606 8.484641 TGTTTAATGTTTGAGCAATTTTGTCA 57.515 26.923 0.00 0.00 0.00 3.58
2557 2608 9.553418 GTTTGTTTAATGTTTGAGCAATTTTGT 57.447 25.926 0.00 0.00 0.00 2.83
2558 2609 9.552114 TGTTTGTTTAATGTTTGAGCAATTTTG 57.448 25.926 0.00 0.00 0.00 2.44
2564 2615 6.039616 GGTCTGTTTGTTTAATGTTTGAGCA 58.960 36.000 0.00 0.00 0.00 4.26
2565 2616 6.273071 AGGTCTGTTTGTTTAATGTTTGAGC 58.727 36.000 0.00 0.00 0.00 4.26
2566 2617 6.918022 GGAGGTCTGTTTGTTTAATGTTTGAG 59.082 38.462 0.00 0.00 0.00 3.02
2567 2618 6.605594 AGGAGGTCTGTTTGTTTAATGTTTGA 59.394 34.615 0.00 0.00 0.00 2.69
2568 2619 6.697019 CAGGAGGTCTGTTTGTTTAATGTTTG 59.303 38.462 0.00 0.00 38.64 2.93
2586 2637 6.674419 ACTTCCATATTTAGAAGACAGGAGGT 59.326 38.462 11.90 0.00 41.69 3.85
2589 2640 9.886132 GTTAACTTCCATATTTAGAAGACAGGA 57.114 33.333 11.90 0.00 41.69 3.86
2590 2641 9.667107 TGTTAACTTCCATATTTAGAAGACAGG 57.333 33.333 7.22 0.00 41.69 4.00
2616 2676 1.269309 TGCGCGCATAAAAAGGTTGTT 60.269 42.857 33.09 0.00 0.00 2.83
2620 2680 0.596082 AACTGCGCGCATAAAAAGGT 59.404 45.000 36.48 23.81 0.00 3.50
2623 2683 2.627863 ATGAACTGCGCGCATAAAAA 57.372 40.000 36.48 19.45 0.00 1.94
2627 2687 1.082690 TCAAATGAACTGCGCGCATA 58.917 45.000 36.48 21.06 0.00 3.14
2628 2688 0.240678 TTCAAATGAACTGCGCGCAT 59.759 45.000 36.48 22.32 0.00 4.73
2629 2689 1.651461 TTCAAATGAACTGCGCGCA 59.349 47.368 34.12 34.12 0.00 6.09
2630 2690 4.531708 TTCAAATGAACTGCGCGC 57.468 50.000 27.26 27.26 0.00 6.86
2641 2701 1.767681 TGGGGCTTTGCTTGTTCAAAT 59.232 42.857 0.00 0.00 35.64 2.32
2645 2705 1.367471 GGTGGGGCTTTGCTTGTTC 59.633 57.895 0.00 0.00 0.00 3.18
2648 2708 1.743321 TTTCGGTGGGGCTTTGCTTG 61.743 55.000 0.00 0.00 0.00 4.01
2659 2719 3.556775 TCGTCTAAACAAAGTTTCGGTGG 59.443 43.478 0.00 0.00 0.00 4.61
2663 2723 6.136539 CGAGTTTTCGTCTAAACAAAGTTTCG 59.863 38.462 0.00 0.00 41.84 3.46
2665 2725 7.064060 TCGAGTTTTCGTCTAAACAAAGTTT 57.936 32.000 11.15 0.51 46.72 2.66
2667 2727 6.651755 TTCGAGTTTTCGTCTAAACAAAGT 57.348 33.333 11.15 0.00 46.72 2.66
2668 2728 7.342194 TCATTCGAGTTTTCGTCTAAACAAAG 58.658 34.615 11.15 4.62 46.72 2.77
2670 2730 6.831727 TCATTCGAGTTTTCGTCTAAACAA 57.168 33.333 11.15 1.34 46.72 2.83
2674 2734 8.752766 ATAGTTTCATTCGAGTTTTCGTCTAA 57.247 30.769 0.00 0.00 46.72 2.10
2675 2735 9.282247 GTATAGTTTCATTCGAGTTTTCGTCTA 57.718 33.333 0.00 0.00 46.72 2.59
2678 2738 7.878477 TGTATAGTTTCATTCGAGTTTTCGT 57.122 32.000 0.00 0.00 46.72 3.85
2682 2742 8.870879 GCTAGTTGTATAGTTTCATTCGAGTTT 58.129 33.333 0.00 0.00 0.00 2.66
2684 2744 7.773149 AGCTAGTTGTATAGTTTCATTCGAGT 58.227 34.615 0.00 0.00 0.00 4.18
2685 2745 9.900710 ATAGCTAGTTGTATAGTTTCATTCGAG 57.099 33.333 0.00 0.00 0.00 4.04
2722 2782 9.354673 TGAGGATGTTTTTACAAGATCTTTTCT 57.645 29.630 4.86 0.00 35.70 2.52
2723 2783 9.617975 CTGAGGATGTTTTTACAAGATCTTTTC 57.382 33.333 4.86 0.00 0.00 2.29
2728 2788 8.329203 ACTTCTGAGGATGTTTTTACAAGATC 57.671 34.615 0.00 0.00 0.00 2.75
2729 2789 8.697507 AACTTCTGAGGATGTTTTTACAAGAT 57.302 30.769 0.00 0.00 36.76 2.40
2746 2806 6.493802 ACTCTGACCTGTAATGTAACTTCTGA 59.506 38.462 0.00 0.00 0.00 3.27
2749 2809 6.308282 CGAACTCTGACCTGTAATGTAACTTC 59.692 42.308 0.00 0.00 0.00 3.01
2752 2812 5.706916 TCGAACTCTGACCTGTAATGTAAC 58.293 41.667 0.00 0.00 0.00 2.50
2759 2819 2.803956 ACCATCGAACTCTGACCTGTA 58.196 47.619 0.00 0.00 0.00 2.74
2773 2835 2.678336 GGTAGCAAAGGAAGAACCATCG 59.322 50.000 0.00 0.00 42.04 3.84
2785 2847 1.892209 ACTTGTTCCGGGTAGCAAAG 58.108 50.000 0.00 0.14 0.00 2.77
2786 2848 3.140623 GTTACTTGTTCCGGGTAGCAAA 58.859 45.455 0.00 0.00 0.00 3.68
2788 2850 1.972795 AGTTACTTGTTCCGGGTAGCA 59.027 47.619 0.00 0.00 0.00 3.49
2789 2851 2.344025 CAGTTACTTGTTCCGGGTAGC 58.656 52.381 0.00 0.00 0.00 3.58
2791 2853 1.693062 TGCAGTTACTTGTTCCGGGTA 59.307 47.619 0.00 0.00 0.00 3.69
2792 2854 0.470766 TGCAGTTACTTGTTCCGGGT 59.529 50.000 0.00 0.00 0.00 5.28
2793 2855 1.265905 GTTGCAGTTACTTGTTCCGGG 59.734 52.381 0.00 0.00 0.00 5.73
2794 2856 1.265905 GGTTGCAGTTACTTGTTCCGG 59.734 52.381 0.00 0.00 0.00 5.14
2795 2857 1.944024 TGGTTGCAGTTACTTGTTCCG 59.056 47.619 0.00 0.00 0.00 4.30
2796 2858 2.949644 AGTGGTTGCAGTTACTTGTTCC 59.050 45.455 0.00 0.00 0.00 3.62
2797 2859 5.106673 GGATAGTGGTTGCAGTTACTTGTTC 60.107 44.000 4.49 1.70 0.00 3.18
2798 2860 4.760204 GGATAGTGGTTGCAGTTACTTGTT 59.240 41.667 4.49 0.00 0.00 2.83
2802 2897 3.055094 CAGGGATAGTGGTTGCAGTTACT 60.055 47.826 4.58 4.58 0.00 2.24
2806 2901 0.035056 GCAGGGATAGTGGTTGCAGT 60.035 55.000 0.00 0.00 34.99 4.40
2813 2908 1.415659 CTCCTTGAGCAGGGATAGTGG 59.584 57.143 1.54 0.00 44.12 4.00
2816 2911 2.392662 TCACTCCTTGAGCAGGGATAG 58.607 52.381 1.54 0.00 44.12 2.08
2818 2913 1.558756 CTTCACTCCTTGAGCAGGGAT 59.441 52.381 1.54 0.00 44.12 3.85
2820 2915 0.689623 ACTTCACTCCTTGAGCAGGG 59.310 55.000 0.00 0.00 44.12 4.45
2832 2945 5.221441 GCCAATAAAGGAAAACCACTTCACT 60.221 40.000 0.00 0.00 0.00 3.41
2833 2946 4.988540 GCCAATAAAGGAAAACCACTTCAC 59.011 41.667 0.00 0.00 0.00 3.18
2839 2952 5.129485 TGTTTCAGCCAATAAAGGAAAACCA 59.871 36.000 0.00 0.00 31.58 3.67
2840 2953 5.606505 TGTTTCAGCCAATAAAGGAAAACC 58.393 37.500 0.00 0.00 31.58 3.27
2841 2954 8.088365 ACTATGTTTCAGCCAATAAAGGAAAAC 58.912 33.333 0.00 0.00 32.43 2.43
2842 2955 8.189119 ACTATGTTTCAGCCAATAAAGGAAAA 57.811 30.769 0.00 0.00 0.00 2.29
2844 2957 7.775053 AACTATGTTTCAGCCAATAAAGGAA 57.225 32.000 0.00 0.00 0.00 3.36
2845 2958 7.775053 AAACTATGTTTCAGCCAATAAAGGA 57.225 32.000 0.00 0.00 0.00 3.36
2846 2959 9.353999 GTAAAACTATGTTTCAGCCAATAAAGG 57.646 33.333 0.00 0.00 0.00 3.11
2847 2960 9.906660 TGTAAAACTATGTTTCAGCCAATAAAG 57.093 29.630 0.00 0.00 0.00 1.85
2849 2962 9.685828 GTTGTAAAACTATGTTTCAGCCAATAA 57.314 29.630 0.00 0.00 0.00 1.40
2850 2963 8.301002 GGTTGTAAAACTATGTTTCAGCCAATA 58.699 33.333 10.51 0.00 0.00 1.90
2851 2964 7.015195 AGGTTGTAAAACTATGTTTCAGCCAAT 59.985 33.333 14.83 0.53 46.27 3.16
2852 2965 6.322712 AGGTTGTAAAACTATGTTTCAGCCAA 59.677 34.615 14.83 6.60 46.27 4.52
2853 2966 5.830991 AGGTTGTAAAACTATGTTTCAGCCA 59.169 36.000 14.83 2.45 46.27 4.75
2854 2967 6.327279 AGGTTGTAAAACTATGTTTCAGCC 57.673 37.500 0.00 8.57 46.27 4.85
2864 2977 9.889128 GGGTGTACATTATAGGTTGTAAAACTA 57.111 33.333 0.00 0.00 46.27 2.24
2866 2979 8.797350 AGGGTGTACATTATAGGTTGTAAAAC 57.203 34.615 0.00 0.00 30.59 2.43
2867 2980 8.828751 AGAGGGTGTACATTATAGGTTGTAAAA 58.171 33.333 0.00 0.00 30.59 1.52
2876 2989 6.732896 AGGAACAGAGGGTGTACATTATAG 57.267 41.667 0.00 0.00 39.03 1.31
2887 3000 6.610425 ACGTCTTATATTTAGGAACAGAGGGT 59.390 38.462 0.00 0.00 0.00 4.34
2893 3006 7.390996 TGCCAAAACGTCTTATATTTAGGAACA 59.609 33.333 0.00 0.00 0.00 3.18
2894 3007 7.754625 TGCCAAAACGTCTTATATTTAGGAAC 58.245 34.615 0.00 0.00 0.00 3.62
2905 3018 5.508200 AATTGAACTGCCAAAACGTCTTA 57.492 34.783 0.00 0.00 0.00 2.10
2906 3019 4.385358 AATTGAACTGCCAAAACGTCTT 57.615 36.364 0.00 0.00 0.00 3.01
2907 3020 4.385358 AAATTGAACTGCCAAAACGTCT 57.615 36.364 0.00 0.00 0.00 4.18
2909 3022 4.506288 GCTTAAATTGAACTGCCAAAACGT 59.494 37.500 0.00 0.00 0.00 3.99
2910 3023 4.744631 AGCTTAAATTGAACTGCCAAAACG 59.255 37.500 0.00 0.00 0.00 3.60
2911 3024 5.558844 GCAGCTTAAATTGAACTGCCAAAAC 60.559 40.000 14.49 0.00 46.21 2.43
2914 3027 3.652274 GCAGCTTAAATTGAACTGCCAA 58.348 40.909 14.49 0.00 46.21 4.52
2918 3031 5.332506 CGTTTTGGCAGCTTAAATTGAACTG 60.333 40.000 0.00 0.00 0.00 3.16
2919 3032 4.744631 CGTTTTGGCAGCTTAAATTGAACT 59.255 37.500 0.00 0.00 0.00 3.01
2920 3033 4.506288 ACGTTTTGGCAGCTTAAATTGAAC 59.494 37.500 0.00 0.00 0.00 3.18
2923 3036 5.402464 AAACGTTTTGGCAGCTTAAATTG 57.598 34.783 7.96 0.00 0.00 2.32
2924 3037 7.722795 ATAAAACGTTTTGGCAGCTTAAATT 57.277 28.000 31.26 6.90 0.00 1.82
2926 3039 7.201145 TGTATAAAACGTTTTGGCAGCTTAAA 58.799 30.769 31.26 11.53 0.00 1.52
2927 3040 6.736123 TGTATAAAACGTTTTGGCAGCTTAA 58.264 32.000 31.26 12.22 0.00 1.85
2929 3042 5.189659 TGTATAAAACGTTTTGGCAGCTT 57.810 34.783 31.26 9.40 0.00 3.74
2931 3044 4.542735 ACTGTATAAAACGTTTTGGCAGC 58.457 39.130 30.92 20.67 32.78 5.25
2932 3045 6.202937 TGAACTGTATAAAACGTTTTGGCAG 58.797 36.000 31.26 30.60 34.19 4.85
2933 3046 6.132791 TGAACTGTATAAAACGTTTTGGCA 57.867 33.333 31.26 23.90 0.00 4.92
2934 3047 7.631915 ATTGAACTGTATAAAACGTTTTGGC 57.368 32.000 31.26 21.30 0.00 4.52
2939 3052 8.789762 AGCCTAAATTGAACTGTATAAAACGTT 58.210 29.630 0.00 0.00 0.00 3.99
2943 3056 7.177568 TGGCAGCCTAAATTGAACTGTATAAAA 59.822 33.333 14.15 0.00 0.00 1.52
2944 3057 6.661377 TGGCAGCCTAAATTGAACTGTATAAA 59.339 34.615 14.15 0.00 0.00 1.40
2946 3059 5.750524 TGGCAGCCTAAATTGAACTGTATA 58.249 37.500 14.15 0.00 0.00 1.47
2947 3060 4.599041 TGGCAGCCTAAATTGAACTGTAT 58.401 39.130 14.15 0.00 0.00 2.29
2948 3061 4.027674 TGGCAGCCTAAATTGAACTGTA 57.972 40.909 14.15 0.00 0.00 2.74
2949 3062 2.875296 TGGCAGCCTAAATTGAACTGT 58.125 42.857 14.15 0.00 0.00 3.55
2950 3063 3.940209 TTGGCAGCCTAAATTGAACTG 57.060 42.857 14.15 0.00 0.00 3.16
2951 3064 4.631131 GTTTTGGCAGCCTAAATTGAACT 58.369 39.130 21.84 0.00 31.82 3.01
2952 3065 3.428534 CGTTTTGGCAGCCTAAATTGAAC 59.571 43.478 21.84 10.14 31.82 3.18
2953 3066 3.068873 ACGTTTTGGCAGCCTAAATTGAA 59.931 39.130 21.84 0.00 31.82 2.69
2954 3067 2.625790 ACGTTTTGGCAGCCTAAATTGA 59.374 40.909 21.84 0.00 31.82 2.57
2957 3070 2.514803 AGACGTTTTGGCAGCCTAAAT 58.485 42.857 21.84 8.98 31.82 1.40
2958 3071 1.975660 AGACGTTTTGGCAGCCTAAA 58.024 45.000 16.16 16.16 0.00 1.85
2961 3074 2.200373 ATAAGACGTTTTGGCAGCCT 57.800 45.000 14.15 0.00 0.00 4.58
2962 3075 4.632538 AATATAAGACGTTTTGGCAGCC 57.367 40.909 3.66 3.66 0.00 4.85
2963 3076 7.011828 TCTAAATATAAGACGTTTTGGCAGC 57.988 36.000 0.83 0.00 0.00 5.25
2964 3077 9.274065 GTTTCTAAATATAAGACGTTTTGGCAG 57.726 33.333 0.83 0.00 0.00 4.85
2965 3078 8.784994 TGTTTCTAAATATAAGACGTTTTGGCA 58.215 29.630 0.83 0.00 0.00 4.92
2967 3080 9.274065 GCTGTTTCTAAATATAAGACGTTTTGG 57.726 33.333 0.83 0.00 0.00 3.28
2968 3081 8.985694 CGCTGTTTCTAAATATAAGACGTTTTG 58.014 33.333 0.83 0.00 0.00 2.44
2969 3082 8.715088 ACGCTGTTTCTAAATATAAGACGTTTT 58.285 29.630 0.00 0.00 0.00 2.43
2971 3084 7.823149 ACGCTGTTTCTAAATATAAGACGTT 57.177 32.000 0.00 0.00 0.00 3.99
2987 3147 6.472163 GCTATTGCATTGTATTAACGCTGTTT 59.528 34.615 0.00 0.00 39.41 2.83
2991 3151 5.749596 TGCTATTGCATTGTATTAACGCT 57.250 34.783 0.00 0.00 45.31 5.07
3008 3168 1.834263 GGAGTCCTGTCCTGTTGCTAT 59.166 52.381 0.41 0.00 33.30 2.97
3017 3177 0.899019 GAGGTTGAGGAGTCCTGTCC 59.101 60.000 18.90 15.26 31.76 4.02
3018 3178 1.548269 CTGAGGTTGAGGAGTCCTGTC 59.452 57.143 18.90 3.59 31.76 3.51
3021 3181 0.787084 TCCTGAGGTTGAGGAGTCCT 59.213 55.000 12.85 12.85 34.49 3.85
3023 3183 2.569404 ACATTCCTGAGGTTGAGGAGTC 59.431 50.000 10.37 0.00 40.79 3.36
3026 3186 3.008375 CAGAACATTCCTGAGGTTGAGGA 59.992 47.826 10.37 0.00 37.87 3.71
3027 3187 3.244700 ACAGAACATTCCTGAGGTTGAGG 60.245 47.826 10.37 0.00 35.69 3.86
3033 3247 4.878397 GGAATACACAGAACATTCCTGAGG 59.122 45.833 0.00 0.00 42.91 3.86
3034 3248 4.568359 CGGAATACACAGAACATTCCTGAG 59.432 45.833 10.05 0.00 43.67 3.35
3044 3258 2.108168 CTCCCTCCGGAATACACAGAA 58.892 52.381 5.23 0.00 37.86 3.02
3051 3265 0.759436 GGTCAGCTCCCTCCGGAATA 60.759 60.000 5.23 0.00 37.86 1.75
3056 3278 0.319728 CATATGGTCAGCTCCCTCCG 59.680 60.000 0.00 0.00 0.00 4.63
3060 3282 3.643792 AGTAGTTCATATGGTCAGCTCCC 59.356 47.826 2.13 0.00 0.00 4.30
3073 3295 4.767578 ACCAGCATGATCAGTAGTTCAT 57.232 40.909 0.09 0.00 39.69 2.57
3149 3371 4.227134 CGCAGATGGAGGACCCGG 62.227 72.222 0.00 0.00 37.93 5.73
3250 3472 1.203050 ACTGCAGCATAACCCCTTGTT 60.203 47.619 15.27 0.00 41.11 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.