Multiple sequence alignment - TraesCS4D01G292000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G292000 chr4D 100.000 5175 0 0 1 5175 463395858 463401032 0.000000e+00 9557.0
1 TraesCS4D01G292000 chr4D 95.868 242 9 1 3524 3764 24775851 24775610 1.750000e-104 390.0
2 TraesCS4D01G292000 chr4D 94.779 249 11 2 3518 3765 362792563 362792316 2.260000e-103 387.0
3 TraesCS4D01G292000 chr4B 97.091 1856 46 5 1671 3524 579098671 579100520 0.000000e+00 3121.0
4 TraesCS4D01G292000 chr4B 96.396 1193 29 5 3763 4950 579100520 579101703 0.000000e+00 1953.0
5 TraesCS4D01G292000 chr4B 93.924 790 31 11 848 1629 579097521 579098301 0.000000e+00 1177.0
6 TraesCS4D01G292000 chr4B 88.449 935 61 19 4023 4950 579104505 579105399 0.000000e+00 1085.0
7 TraesCS4D01G292000 chr4B 85.339 457 44 14 174 627 135147878 135147442 7.900000e-123 451.0
8 TraesCS4D01G292000 chr4B 94.634 205 9 1 4973 5175 579101693 579101897 3.010000e-82 316.0
9 TraesCS4D01G292000 chr4B 94.634 205 7 3 4973 5175 579105389 579105591 1.080000e-81 315.0
10 TraesCS4D01G292000 chr4B 75.150 334 51 17 486 793 648228606 648228933 1.510000e-25 128.0
11 TraesCS4D01G292000 chr4B 82.031 128 20 3 675 800 612504863 612504737 7.090000e-19 106.0
12 TraesCS4D01G292000 chr4B 73.913 299 46 17 503 775 648182485 648182777 1.980000e-14 91.6
13 TraesCS4D01G292000 chr4A 96.123 1496 50 6 1690 3184 6038259 6036771 0.000000e+00 2435.0
14 TraesCS4D01G292000 chr4A 93.719 1194 57 9 3763 4950 6036492 6035311 0.000000e+00 1773.0
15 TraesCS4D01G292000 chr4A 89.772 1095 76 25 858 1927 6046017 6044934 0.000000e+00 1369.0
16 TraesCS4D01G292000 chr4A 91.349 786 24 24 852 1627 6039012 6038261 0.000000e+00 1035.0
17 TraesCS4D01G292000 chr4A 89.013 446 30 13 174 608 5161318 5160881 7.630000e-148 534.0
18 TraesCS4D01G292000 chr4A 90.750 400 30 5 174 570 463864749 463864354 1.280000e-145 527.0
19 TraesCS4D01G292000 chr4A 97.952 293 5 1 3232 3524 6036783 6036492 1.660000e-139 507.0
20 TraesCS4D01G292000 chr4A 95.885 243 9 1 3523 3764 443855031 443855273 4.860000e-105 392.0
21 TraesCS4D01G292000 chr4A 95.885 243 9 1 3523 3764 615435031 615435273 4.860000e-105 392.0
22 TraesCS4D01G292000 chr4A 90.977 133 5 2 4973 5099 6035321 6035190 6.890000e-39 172.0
23 TraesCS4D01G292000 chr4A 96.491 57 2 0 5118 5174 6035191 6035135 1.530000e-15 95.3
24 TraesCS4D01G292000 chr3B 87.838 444 41 9 174 610 139003333 139003770 4.620000e-140 508.0
25 TraesCS4D01G292000 chr1D 85.282 496 46 10 164 651 407205506 407205982 2.170000e-133 486.0
26 TraesCS4D01G292000 chr1D 92.355 327 23 2 174 498 25681519 25681193 1.010000e-126 464.0
27 TraesCS4D01G292000 chr1D 94.862 253 11 2 3514 3764 448103126 448103378 1.350000e-105 394.0
28 TraesCS4D01G292000 chr7A 85.745 463 45 12 174 627 188574928 188574478 2.180000e-128 470.0
29 TraesCS4D01G292000 chr2B 90.881 329 24 6 174 498 40073319 40072993 2.210000e-118 436.0
30 TraesCS4D01G292000 chr2B 78.636 660 69 34 182 793 166034810 166034175 6.330000e-99 372.0
31 TraesCS4D01G292000 chr2B 78.366 661 71 32 182 793 481896380 481897017 3.810000e-96 363.0
32 TraesCS4D01G292000 chr2B 94.156 154 9 0 1 154 40073422 40073269 8.660000e-58 235.0
33 TraesCS4D01G292000 chr2B 81.933 238 21 12 585 800 40072906 40072669 1.140000e-41 182.0
34 TraesCS4D01G292000 chr2B 81.013 237 22 9 586 799 609208394 609208158 3.210000e-37 167.0
35 TraesCS4D01G292000 chr2B 82.883 111 16 3 656 763 5534234 5534124 4.270000e-16 97.1
36 TraesCS4D01G292000 chr2B 77.863 131 26 3 647 775 767499918 767499789 1.540000e-10 78.7
37 TraesCS4D01G292000 chr5B 95.951 247 8 2 3520 3764 656245380 656245626 2.900000e-107 399.0
38 TraesCS4D01G292000 chr5B 75.588 340 51 16 480 793 516276944 516277277 6.990000e-29 139.0
39 TraesCS4D01G292000 chr2D 84.819 415 44 18 182 582 166116225 166115816 2.900000e-107 399.0
40 TraesCS4D01G292000 chr2D 96.296 243 8 1 3523 3764 541547288 541547530 1.040000e-106 398.0
41 TraesCS4D01G292000 chr2D 93.585 265 15 2 3509 3772 357671674 357671937 1.350000e-105 394.0
42 TraesCS4D01G292000 chr2D 85.976 164 15 6 648 806 640819408 640819568 8.910000e-38 169.0
43 TraesCS4D01G292000 chr5D 93.182 264 17 1 3502 3764 261999290 261999553 2.260000e-103 387.0
44 TraesCS4D01G292000 chr5D 80.503 159 27 3 647 802 527492230 527492387 9.100000e-23 119.0
45 TraesCS4D01G292000 chr1B 79.027 658 69 31 182 793 551878079 551878713 2.260000e-103 387.0
46 TraesCS4D01G292000 chr1B 80.000 165 27 4 640 800 83977955 83977793 3.270000e-22 117.0
47 TraesCS4D01G292000 chr7D 90.741 162 13 2 640 800 530709965 530710125 1.130000e-51 215.0
48 TraesCS4D01G292000 chr7B 73.544 412 76 20 209 612 713643856 713644242 5.440000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G292000 chr4D 463395858 463401032 5174 False 9557.000000 9557 100.000000 1 5175 1 chr4D.!!$F1 5174
1 TraesCS4D01G292000 chr4B 579097521 579105591 8070 False 1327.833333 3121 94.188000 848 5175 6 chr4B.!!$F3 4327
2 TraesCS4D01G292000 chr4A 6044934 6046017 1083 True 1369.000000 1369 89.772000 858 1927 1 chr4A.!!$R2 1069
3 TraesCS4D01G292000 chr4A 6035135 6039012 3877 True 1002.883333 2435 94.435167 852 5174 6 chr4A.!!$R4 4322
4 TraesCS4D01G292000 chr2B 166034175 166034810 635 True 372.000000 372 78.636000 182 793 1 chr2B.!!$R2 611
5 TraesCS4D01G292000 chr2B 481896380 481897017 637 False 363.000000 363 78.366000 182 793 1 chr2B.!!$F1 611
6 TraesCS4D01G292000 chr2B 40072669 40073422 753 True 284.333333 436 88.990000 1 800 3 chr2B.!!$R5 799
7 TraesCS4D01G292000 chr1B 551878079 551878713 634 False 387.000000 387 79.027000 182 793 1 chr1B.!!$F1 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
701 783 0.175760 CACAGTATAGTGTGGCGCCT 59.824 55.000 29.70 9.99 43.56 5.52 F
1387 1494 0.249398 CAAGGTTACGTGCTAGGGCT 59.751 55.000 0.00 0.00 39.59 5.19 F
1395 1502 0.725117 CGTGCTAGGGCTTTTTACGG 59.275 55.000 0.00 0.00 39.59 4.02 F
1408 1515 0.889994 TTTACGGACGAGGCTGCTTA 59.110 50.000 0.00 0.00 0.00 3.09 F
2051 2493 1.202615 ACAGAGGGCATCATGATGTCG 60.203 52.381 31.09 20.56 43.98 4.35 F
2119 2561 1.547675 GGAAACTGCATCCTGGGTCAA 60.548 52.381 0.00 0.00 33.98 3.18 F
3663 4106 2.217750 ACTGCATGCTAAACGTGTTGA 58.782 42.857 20.33 0.00 37.62 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1984 2425 0.168788 GGTTGCATCACACCACATCG 59.831 55.000 0.21 0.00 0.00 3.84 R
2932 3375 3.282021 ACATCTGTTTCAGCACACAAGT 58.718 40.909 0.00 0.00 0.00 3.16 R
3506 3949 8.718102 TTGACTAGTAATAATCAAGGTTCAGC 57.282 34.615 0.00 0.00 0.00 4.26 R
3526 3969 3.938334 TGCATTGCACGTACATATTGACT 59.062 39.130 7.38 0.00 31.71 3.41 R
3651 4094 0.091344 CGAGCGCTCAACACGTTTAG 59.909 55.000 34.69 12.34 0.00 1.85 R
3665 4108 0.094216 CACTGCTTCAATGTCGAGCG 59.906 55.000 0.00 0.00 39.23 5.03 R
4732 5183 0.037605 GTTGTGCCTACACCGCTAGT 60.038 55.000 0.00 0.00 46.86 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 7.295340 AGATATGAAACAATAACCCTAACCCC 58.705 38.462 0.00 0.00 0.00 4.95
81 82 1.990327 ACCCTAACCCCCACTTAACAG 59.010 52.381 0.00 0.00 0.00 3.16
91 92 3.566742 CCCCACTTAACAGTAACCACAAC 59.433 47.826 0.00 0.00 0.00 3.32
93 94 3.566742 CCACTTAACAGTAACCACAACCC 59.433 47.826 0.00 0.00 0.00 4.11
102 103 5.183228 CAGTAACCACAACCCTAACCATAG 58.817 45.833 0.00 0.00 0.00 2.23
108 109 4.578928 CCACAACCCTAACCATAGCATAAC 59.421 45.833 0.00 0.00 0.00 1.89
109 110 4.578928 CACAACCCTAACCATAGCATAACC 59.421 45.833 0.00 0.00 0.00 2.85
110 111 4.142038 CAACCCTAACCATAGCATAACCC 58.858 47.826 0.00 0.00 0.00 4.11
111 112 3.676750 ACCCTAACCATAGCATAACCCT 58.323 45.455 0.00 0.00 0.00 4.34
112 113 4.834852 ACCCTAACCATAGCATAACCCTA 58.165 43.478 0.00 0.00 0.00 3.53
113 114 5.229174 ACCCTAACCATAGCATAACCCTAA 58.771 41.667 0.00 0.00 0.00 2.69
114 115 5.072736 ACCCTAACCATAGCATAACCCTAAC 59.927 44.000 0.00 0.00 0.00 2.34
115 116 5.514310 CCCTAACCATAGCATAACCCTAACC 60.514 48.000 0.00 0.00 0.00 2.85
116 117 4.448720 AACCATAGCATAACCCTAACCC 57.551 45.455 0.00 0.00 0.00 4.11
117 118 3.676750 ACCATAGCATAACCCTAACCCT 58.323 45.455 0.00 0.00 0.00 4.34
118 119 4.834852 ACCATAGCATAACCCTAACCCTA 58.165 43.478 0.00 0.00 0.00 3.53
119 120 5.229174 ACCATAGCATAACCCTAACCCTAA 58.771 41.667 0.00 0.00 0.00 2.69
120 121 5.072736 ACCATAGCATAACCCTAACCCTAAC 59.927 44.000 0.00 0.00 0.00 2.34
121 122 5.514310 CCATAGCATAACCCTAACCCTAACC 60.514 48.000 0.00 0.00 0.00 2.85
122 123 2.781757 AGCATAACCCTAACCCTAACCC 59.218 50.000 0.00 0.00 0.00 4.11
123 124 2.158564 GCATAACCCTAACCCTAACCCC 60.159 54.545 0.00 0.00 0.00 4.95
124 125 3.124861 CATAACCCTAACCCTAACCCCA 58.875 50.000 0.00 0.00 0.00 4.96
125 126 2.152680 AACCCTAACCCTAACCCCAA 57.847 50.000 0.00 0.00 0.00 4.12
126 127 1.375610 ACCCTAACCCTAACCCCAAC 58.624 55.000 0.00 0.00 0.00 3.77
127 128 1.374572 CCCTAACCCTAACCCCAACA 58.625 55.000 0.00 0.00 0.00 3.33
128 129 1.927371 CCCTAACCCTAACCCCAACAT 59.073 52.381 0.00 0.00 0.00 2.71
129 130 3.124861 CCCTAACCCTAACCCCAACATA 58.875 50.000 0.00 0.00 0.00 2.29
130 131 3.528491 CCCTAACCCTAACCCCAACATAA 59.472 47.826 0.00 0.00 0.00 1.90
131 132 4.169264 CCCTAACCCTAACCCCAACATAAT 59.831 45.833 0.00 0.00 0.00 1.28
132 133 5.373257 CCCTAACCCTAACCCCAACATAATA 59.627 44.000 0.00 0.00 0.00 0.98
133 134 6.126127 CCCTAACCCTAACCCCAACATAATAA 60.126 42.308 0.00 0.00 0.00 1.40
134 135 6.774170 CCTAACCCTAACCCCAACATAATAAC 59.226 42.308 0.00 0.00 0.00 1.89
135 136 5.799978 ACCCTAACCCCAACATAATAACA 57.200 39.130 0.00 0.00 0.00 2.41
136 137 5.512298 ACCCTAACCCCAACATAATAACAC 58.488 41.667 0.00 0.00 0.00 3.32
137 138 5.015391 ACCCTAACCCCAACATAATAACACA 59.985 40.000 0.00 0.00 0.00 3.72
138 139 5.358725 CCCTAACCCCAACATAATAACACAC 59.641 44.000 0.00 0.00 0.00 3.82
139 140 5.946972 CCTAACCCCAACATAATAACACACA 59.053 40.000 0.00 0.00 0.00 3.72
140 141 6.605594 CCTAACCCCAACATAATAACACACAT 59.394 38.462 0.00 0.00 0.00 3.21
141 142 7.776030 CCTAACCCCAACATAATAACACACATA 59.224 37.037 0.00 0.00 0.00 2.29
142 143 9.179909 CTAACCCCAACATAATAACACACATAA 57.820 33.333 0.00 0.00 0.00 1.90
143 144 7.399245 ACCCCAACATAATAACACACATAAC 57.601 36.000 0.00 0.00 0.00 1.89
144 145 6.378848 ACCCCAACATAATAACACACATAACC 59.621 38.462 0.00 0.00 0.00 2.85
145 146 6.183360 CCCCAACATAATAACACACATAACCC 60.183 42.308 0.00 0.00 0.00 4.11
146 147 6.605594 CCCAACATAATAACACACATAACCCT 59.394 38.462 0.00 0.00 0.00 4.34
147 148 7.776030 CCCAACATAATAACACACATAACCCTA 59.224 37.037 0.00 0.00 0.00 3.53
148 149 9.179909 CCAACATAATAACACACATAACCCTAA 57.820 33.333 0.00 0.00 0.00 2.69
149 150 9.997482 CAACATAATAACACACATAACCCTAAC 57.003 33.333 0.00 0.00 0.00 2.34
150 151 8.741603 ACATAATAACACACATAACCCTAACC 57.258 34.615 0.00 0.00 0.00 2.85
151 152 7.776500 ACATAATAACACACATAACCCTAACCC 59.224 37.037 0.00 0.00 0.00 4.11
152 153 6.397217 AATAACACACATAACCCTAACCCT 57.603 37.500 0.00 0.00 0.00 4.34
153 154 7.513560 AATAACACACATAACCCTAACCCTA 57.486 36.000 0.00 0.00 0.00 3.53
154 155 5.846528 AACACACATAACCCTAACCCTAA 57.153 39.130 0.00 0.00 0.00 2.69
155 156 5.169992 ACACACATAACCCTAACCCTAAC 57.830 43.478 0.00 0.00 0.00 2.34
156 157 4.019051 ACACACATAACCCTAACCCTAACC 60.019 45.833 0.00 0.00 0.00 2.85
157 158 3.524789 ACACATAACCCTAACCCTAACCC 59.475 47.826 0.00 0.00 0.00 4.11
158 159 3.117776 CACATAACCCTAACCCTAACCCC 60.118 52.174 0.00 0.00 0.00 4.95
159 160 3.124861 CATAACCCTAACCCTAACCCCA 58.875 50.000 0.00 0.00 0.00 4.96
160 161 2.152680 AACCCTAACCCTAACCCCAA 57.847 50.000 0.00 0.00 0.00 4.12
161 162 1.375610 ACCCTAACCCTAACCCCAAC 58.624 55.000 0.00 0.00 0.00 3.77
162 163 1.374572 CCCTAACCCTAACCCCAACA 58.625 55.000 0.00 0.00 0.00 3.33
163 164 1.927371 CCCTAACCCTAACCCCAACAT 59.073 52.381 0.00 0.00 0.00 2.71
164 165 3.124861 CCCTAACCCTAACCCCAACATA 58.875 50.000 0.00 0.00 0.00 2.29
165 166 3.528491 CCCTAACCCTAACCCCAACATAA 59.472 47.826 0.00 0.00 0.00 1.90
166 167 4.169264 CCCTAACCCTAACCCCAACATAAT 59.831 45.833 0.00 0.00 0.00 1.28
167 168 5.373257 CCCTAACCCTAACCCCAACATAATA 59.627 44.000 0.00 0.00 0.00 0.98
168 169 6.126127 CCCTAACCCTAACCCCAACATAATAA 60.126 42.308 0.00 0.00 0.00 1.40
169 170 6.774170 CCTAACCCTAACCCCAACATAATAAC 59.226 42.308 0.00 0.00 0.00 1.89
170 171 5.799978 ACCCTAACCCCAACATAATAACA 57.200 39.130 0.00 0.00 0.00 2.41
171 172 5.512298 ACCCTAACCCCAACATAATAACAC 58.488 41.667 0.00 0.00 0.00 3.32
172 173 5.015391 ACCCTAACCCCAACATAATAACACA 59.985 40.000 0.00 0.00 0.00 3.72
173 174 5.358725 CCCTAACCCCAACATAATAACACAC 59.641 44.000 0.00 0.00 0.00 3.82
174 175 5.946972 CCTAACCCCAACATAATAACACACA 59.053 40.000 0.00 0.00 0.00 3.72
175 176 6.605594 CCTAACCCCAACATAATAACACACAT 59.394 38.462 0.00 0.00 0.00 3.21
176 177 7.776030 CCTAACCCCAACATAATAACACACATA 59.224 37.037 0.00 0.00 0.00 2.29
177 178 9.179909 CTAACCCCAACATAATAACACACATAA 57.820 33.333 0.00 0.00 0.00 1.90
229 230 5.307196 ACACATAACCCTAACCCTAGCATAG 59.693 44.000 0.00 0.00 38.80 2.23
232 233 6.724905 ACATAACCCTAACCCTAGCATAGTAG 59.275 42.308 0.00 0.00 36.82 2.57
299 301 7.014092 TCAACACAAATTTTCAAATCCAAGC 57.986 32.000 0.00 0.00 0.00 4.01
340 345 7.029563 CCCAAACTAACAAGATATGAGCAAAC 58.970 38.462 0.00 0.00 0.00 2.93
351 356 5.877012 AGATATGAGCAAACGTGACAATTCT 59.123 36.000 0.00 0.00 0.00 2.40
439 444 4.082463 GGACAAATACTCCGGATTTGCAAA 60.082 41.667 22.92 15.44 44.59 3.68
462 467 5.786121 ATTTGAGAAGGATTTGAGAGGGA 57.214 39.130 0.00 0.00 0.00 4.20
489 512 0.899720 CTTAGCTTCGGGTGTGGGTA 59.100 55.000 0.00 0.00 0.00 3.69
506 529 3.116383 TAGGGTGGGGGTGTGTGGA 62.116 63.158 0.00 0.00 0.00 4.02
513 536 3.175710 GGGTGTGTGGAGTGGGGT 61.176 66.667 0.00 0.00 0.00 4.95
514 537 2.113139 GGTGTGTGGAGTGGGGTG 59.887 66.667 0.00 0.00 0.00 4.61
517 540 3.175710 GTGTGGAGTGGGGTGGGT 61.176 66.667 0.00 0.00 0.00 4.51
558 584 3.005472 GCCTAAGTGACACACAGACAGTA 59.995 47.826 8.59 0.00 36.74 2.74
572 598 0.613853 ACAGTACAGCGCCTAAGGGA 60.614 55.000 2.29 0.00 33.58 4.20
581 607 3.885814 CCTAAGGGATAGGCGCCA 58.114 61.111 31.54 15.56 44.72 5.69
582 608 2.142220 CCTAAGGGATAGGCGCCAA 58.858 57.895 31.54 1.85 44.72 4.52
583 609 0.693049 CCTAAGGGATAGGCGCCAAT 59.307 55.000 31.54 12.06 44.72 3.16
627 653 0.179094 TATCCCTTAGGCGTTGCACG 60.179 55.000 0.00 4.61 45.88 5.34
628 654 1.895020 ATCCCTTAGGCGTTGCACGA 61.895 55.000 11.94 0.00 46.05 4.35
635 661 2.476051 GCGTTGCACGACTGGATG 59.524 61.111 11.94 0.00 46.05 3.51
636 662 2.317609 GCGTTGCACGACTGGATGT 61.318 57.895 11.94 0.00 46.05 3.06
676 758 0.898326 TGTGACGCCTAAGAGCCAGA 60.898 55.000 0.00 0.00 0.00 3.86
689 771 1.448540 GCCAGACGCTGCACAGTAT 60.449 57.895 0.00 0.00 0.00 2.12
701 783 0.175760 CACAGTATAGTGTGGCGCCT 59.824 55.000 29.70 9.99 43.56 5.52
751 835 8.141268 GGTCAGTTTATGAATTTTTCAAGGACA 58.859 33.333 0.00 0.00 43.95 4.02
752 836 9.185192 GTCAGTTTATGAATTTTTCAAGGACAG 57.815 33.333 0.00 0.00 43.95 3.51
753 837 8.912988 TCAGTTTATGAATTTTTCAAGGACAGT 58.087 29.630 0.00 0.00 43.95 3.55
754 838 9.533253 CAGTTTATGAATTTTTCAAGGACAGTT 57.467 29.630 0.00 0.00 43.95 3.16
755 839 9.750125 AGTTTATGAATTTTTCAAGGACAGTTC 57.250 29.630 0.00 0.00 43.95 3.01
756 840 9.528018 GTTTATGAATTTTTCAAGGACAGTTCA 57.472 29.630 0.00 0.00 43.95 3.18
757 841 9.748708 TTTATGAATTTTTCAAGGACAGTTCAG 57.251 29.630 0.00 0.00 43.95 3.02
758 842 7.587037 ATGAATTTTTCAAGGACAGTTCAGA 57.413 32.000 0.00 0.00 43.95 3.27
759 843 7.587037 TGAATTTTTCAAGGACAGTTCAGAT 57.413 32.000 0.00 0.00 36.59 2.90
760 844 7.651808 TGAATTTTTCAAGGACAGTTCAGATC 58.348 34.615 0.00 0.00 36.59 2.75
761 845 5.673337 TTTTTCAAGGACAGTTCAGATCG 57.327 39.130 0.00 0.00 0.00 3.69
762 846 4.336889 TTTCAAGGACAGTTCAGATCGT 57.663 40.909 0.00 0.00 0.00 3.73
763 847 3.303881 TCAAGGACAGTTCAGATCGTG 57.696 47.619 0.00 0.00 0.00 4.35
764 848 2.890945 TCAAGGACAGTTCAGATCGTGA 59.109 45.455 0.00 0.00 0.00 4.35
765 849 3.320826 TCAAGGACAGTTCAGATCGTGAA 59.679 43.478 4.18 4.18 43.26 3.18
766 850 4.021104 TCAAGGACAGTTCAGATCGTGAAT 60.021 41.667 9.75 0.00 46.99 2.57
767 851 4.543590 AGGACAGTTCAGATCGTGAATT 57.456 40.909 9.75 4.67 46.99 2.17
774 858 6.099579 AGTTCAGATCGTGAATTGATTTCG 57.900 37.500 9.75 0.00 46.99 3.46
775 859 4.520743 TCAGATCGTGAATTGATTTCGC 57.479 40.909 0.00 0.00 40.71 4.70
776 860 3.309682 TCAGATCGTGAATTGATTTCGCC 59.690 43.478 0.00 0.00 40.98 5.54
777 861 3.063861 CAGATCGTGAATTGATTTCGCCA 59.936 43.478 0.00 0.00 40.98 5.69
778 862 3.689161 AGATCGTGAATTGATTTCGCCAA 59.311 39.130 0.00 0.00 40.98 4.52
779 863 3.196007 TCGTGAATTGATTTCGCCAAC 57.804 42.857 0.00 0.00 40.98 3.77
780 864 2.095466 TCGTGAATTGATTTCGCCAACC 60.095 45.455 0.00 0.00 40.98 3.77
781 865 2.095263 CGTGAATTGATTTCGCCAACCT 60.095 45.455 0.00 0.00 40.98 3.50
782 866 3.244976 GTGAATTGATTTCGCCAACCTG 58.755 45.455 0.00 0.00 38.64 4.00
783 867 2.890311 TGAATTGATTTCGCCAACCTGT 59.110 40.909 0.00 0.00 37.13 4.00
784 868 3.057596 TGAATTGATTTCGCCAACCTGTC 60.058 43.478 0.00 0.00 37.13 3.51
785 869 1.974265 TTGATTTCGCCAACCTGTCA 58.026 45.000 0.00 0.00 0.00 3.58
786 870 1.974265 TGATTTCGCCAACCTGTCAA 58.026 45.000 0.00 0.00 0.00 3.18
787 871 2.302260 TGATTTCGCCAACCTGTCAAA 58.698 42.857 0.00 0.00 0.00 2.69
788 872 2.890311 TGATTTCGCCAACCTGTCAAAT 59.110 40.909 0.00 0.00 0.00 2.32
789 873 4.075682 TGATTTCGCCAACCTGTCAAATA 58.924 39.130 0.00 0.00 0.00 1.40
790 874 4.704540 TGATTTCGCCAACCTGTCAAATAT 59.295 37.500 0.00 0.00 0.00 1.28
791 875 4.433186 TTTCGCCAACCTGTCAAATATG 57.567 40.909 0.00 0.00 0.00 1.78
792 876 3.066291 TCGCCAACCTGTCAAATATGT 57.934 42.857 0.00 0.00 0.00 2.29
793 877 3.417101 TCGCCAACCTGTCAAATATGTT 58.583 40.909 0.00 0.00 0.00 2.71
794 878 3.823873 TCGCCAACCTGTCAAATATGTTT 59.176 39.130 0.00 0.00 0.00 2.83
795 879 4.279671 TCGCCAACCTGTCAAATATGTTTT 59.720 37.500 0.00 0.00 0.00 2.43
796 880 4.987912 CGCCAACCTGTCAAATATGTTTTT 59.012 37.500 0.00 0.00 0.00 1.94
818 902 4.919774 TTTTTGCCTATGTCCTACTCCA 57.080 40.909 0.00 0.00 0.00 3.86
819 903 3.906720 TTTGCCTATGTCCTACTCCAC 57.093 47.619 0.00 0.00 0.00 4.02
820 904 2.543037 TGCCTATGTCCTACTCCACA 57.457 50.000 0.00 0.00 0.00 4.17
821 905 2.827755 TGCCTATGTCCTACTCCACAA 58.172 47.619 0.00 0.00 0.00 3.33
822 906 2.500098 TGCCTATGTCCTACTCCACAAC 59.500 50.000 0.00 0.00 0.00 3.32
823 907 2.766828 GCCTATGTCCTACTCCACAACT 59.233 50.000 0.00 0.00 0.00 3.16
824 908 3.197983 GCCTATGTCCTACTCCACAACTT 59.802 47.826 0.00 0.00 0.00 2.66
825 909 4.323562 GCCTATGTCCTACTCCACAACTTT 60.324 45.833 0.00 0.00 0.00 2.66
826 910 5.803470 GCCTATGTCCTACTCCACAACTTTT 60.803 44.000 0.00 0.00 0.00 2.27
827 911 6.238648 CCTATGTCCTACTCCACAACTTTTT 58.761 40.000 0.00 0.00 0.00 1.94
843 927 1.995376 TTTTTGACTTGGGAGGAGGC 58.005 50.000 0.00 0.00 0.00 4.70
844 928 0.850100 TTTTGACTTGGGAGGAGGCA 59.150 50.000 0.00 0.00 0.00 4.75
845 929 0.850100 TTTGACTTGGGAGGAGGCAA 59.150 50.000 0.00 0.00 40.27 4.52
846 930 0.850100 TTGACTTGGGAGGAGGCAAA 59.150 50.000 0.00 0.00 39.12 3.68
868 952 3.659841 TCCATATACCAGGCCTTGTGTA 58.340 45.455 19.53 16.93 0.00 2.90
915 1005 2.350057 AGCACTGTAGCTATCTCCGA 57.650 50.000 0.00 0.00 44.50 4.55
916 1006 2.870175 AGCACTGTAGCTATCTCCGAT 58.130 47.619 0.00 0.00 44.50 4.18
1334 1438 2.663196 CCAGACGGTGAGTTCCCC 59.337 66.667 0.00 0.00 0.00 4.81
1361 1465 1.008329 CTCTCGTGTCGACTCCCTAC 58.992 60.000 17.92 4.96 0.00 3.18
1367 1474 1.025113 TGTCGACTCCCTACGAGCAG 61.025 60.000 17.92 0.00 43.01 4.24
1368 1475 2.113433 TCGACTCCCTACGAGCAGC 61.113 63.158 0.00 0.00 43.01 5.25
1370 1477 1.890894 GACTCCCTACGAGCAGCAA 59.109 57.895 0.00 0.00 43.01 3.91
1387 1494 0.249398 CAAGGTTACGTGCTAGGGCT 59.751 55.000 0.00 0.00 39.59 5.19
1388 1495 0.981943 AAGGTTACGTGCTAGGGCTT 59.018 50.000 0.00 0.00 39.59 4.35
1389 1496 0.981943 AGGTTACGTGCTAGGGCTTT 59.018 50.000 0.00 0.00 39.59 3.51
1390 1497 1.350019 AGGTTACGTGCTAGGGCTTTT 59.650 47.619 0.00 0.00 39.59 2.27
1392 1499 3.008266 AGGTTACGTGCTAGGGCTTTTTA 59.992 43.478 0.00 0.00 39.59 1.52
1393 1500 3.125829 GGTTACGTGCTAGGGCTTTTTAC 59.874 47.826 0.00 0.00 39.59 2.01
1394 1501 1.435577 ACGTGCTAGGGCTTTTTACG 58.564 50.000 0.00 0.00 38.32 3.18
1395 1502 0.725117 CGTGCTAGGGCTTTTTACGG 59.275 55.000 0.00 0.00 39.59 4.02
1397 1504 1.736126 GTGCTAGGGCTTTTTACGGAC 59.264 52.381 0.00 0.00 39.59 4.79
1399 1506 1.404583 GCTAGGGCTTTTTACGGACGA 60.405 52.381 0.00 0.00 35.22 4.20
1408 1515 0.889994 TTTACGGACGAGGCTGCTTA 59.110 50.000 0.00 0.00 0.00 3.09
1448 1555 4.939052 AATCTTATGTACACCCTCGAGG 57.061 45.455 25.36 25.36 43.78 4.63
1527 1636 6.817140 GGTACTTAAATTTCTCATCGGTGACT 59.183 38.462 0.00 0.00 0.00 3.41
1529 1639 9.021863 GTACTTAAATTTCTCATCGGTGACTAG 57.978 37.037 0.00 0.00 0.00 2.57
1561 1674 7.632721 TGTGACTGTTTTAAGGTTTCGATTAC 58.367 34.615 0.00 0.00 0.00 1.89
1604 1717 2.381911 GACATTGGGATGCCTGTGAAT 58.618 47.619 13.67 0.00 36.72 2.57
1643 1756 4.198028 ACCCTAGTTTTAAGTGCTACCG 57.802 45.455 0.00 0.00 0.00 4.02
1648 1761 3.064931 AGTTTTAAGTGCTACCGTGCTC 58.935 45.455 0.00 0.00 0.00 4.26
1651 1764 2.133281 TAAGTGCTACCGTGCTCCTA 57.867 50.000 0.00 0.00 0.00 2.94
1657 1770 3.063588 GTGCTACCGTGCTCCTATTTTTC 59.936 47.826 0.00 0.00 0.00 2.29
1659 1772 3.681874 GCTACCGTGCTCCTATTTTTCCT 60.682 47.826 0.00 0.00 0.00 3.36
1660 1773 2.711542 ACCGTGCTCCTATTTTTCCTG 58.288 47.619 0.00 0.00 0.00 3.86
1665 1778 2.242196 TGCTCCTATTTTTCCTGGGAGG 59.758 50.000 8.99 0.00 42.54 4.30
1835 2276 7.977293 TCTGTTGCATCAGGAATTAAATGATTG 59.023 33.333 21.65 0.00 36.25 2.67
1861 2302 8.865420 ACTTCATACCTCTATCTAATTAGCGA 57.135 34.615 7.67 3.70 0.00 4.93
1902 2343 3.194005 ACAAGGTCTTCGAGCTTCAAA 57.806 42.857 5.42 0.00 45.53 2.69
1966 2407 4.326826 CAGGAGAGCACCATTGTAAAAGA 58.673 43.478 0.00 0.00 0.00 2.52
1984 2425 2.029623 AGATCAGGAAATGTGGCATGC 58.970 47.619 9.90 9.90 0.00 4.06
2033 2474 4.523083 AGGTTTGAAGTTAGCAAGTGACA 58.477 39.130 0.00 0.00 0.00 3.58
2034 2475 4.576463 AGGTTTGAAGTTAGCAAGTGACAG 59.424 41.667 0.00 0.00 0.00 3.51
2048 2490 2.158798 AGTGACAGAGGGCATCATGATG 60.159 50.000 28.04 28.04 41.60 3.07
2051 2493 1.202615 ACAGAGGGCATCATGATGTCG 60.203 52.381 31.09 20.56 43.98 4.35
2054 2496 2.700371 AGAGGGCATCATGATGTCGTAA 59.300 45.455 29.64 0.00 43.98 3.18
2081 2523 9.565090 TCATTGGATGATAGGAAATTGTTCTAG 57.435 33.333 0.00 0.00 33.59 2.43
2119 2561 1.547675 GGAAACTGCATCCTGGGTCAA 60.548 52.381 0.00 0.00 33.98 3.18
2138 2580 7.505585 TGGGTCAATGAACTTGATAGACTTTTT 59.494 33.333 0.00 0.00 45.36 1.94
2169 2612 6.183360 TGCTTAAATGCAGTTCCATCCAATAG 60.183 38.462 1.02 0.00 38.12 1.73
2288 2731 6.521527 AGTTCTAGAATATCCCAATGCCTT 57.478 37.500 8.75 0.00 0.00 4.35
2369 2812 7.118535 GGTCTGGATCTTGAAGTTTTCTAGTTC 59.881 40.741 0.00 2.85 36.83 3.01
2695 3138 5.352569 ACTTGATAGTTGATACACTTGCTGC 59.647 40.000 0.00 0.00 0.00 5.25
2932 3375 4.154176 TGGCTATCCGGTAAGCTATTGTA 58.846 43.478 23.58 7.23 38.80 2.41
3506 3949 6.397272 TCACCATTGCTAAAGGCTTTATTTG 58.603 36.000 19.32 13.51 42.39 2.32
3528 3971 9.686683 ATTTGCTGAACCTTGATTATTACTAGT 57.313 29.630 0.00 0.00 0.00 2.57
3529 3972 8.718102 TTGCTGAACCTTGATTATTACTAGTC 57.282 34.615 0.00 0.00 0.00 2.59
3530 3973 7.847096 TGCTGAACCTTGATTATTACTAGTCA 58.153 34.615 0.00 0.00 0.00 3.41
3531 3974 8.318412 TGCTGAACCTTGATTATTACTAGTCAA 58.682 33.333 0.00 0.00 33.87 3.18
3532 3975 9.331282 GCTGAACCTTGATTATTACTAGTCAAT 57.669 33.333 0.00 0.00 34.32 2.57
3546 3989 6.828502 ACTAGTCAATATGTACGTGCAATG 57.171 37.500 11.22 10.42 0.00 2.82
3547 3990 4.536364 AGTCAATATGTACGTGCAATGC 57.464 40.909 11.22 0.00 0.00 3.56
3548 3991 3.938334 AGTCAATATGTACGTGCAATGCA 59.062 39.130 11.22 2.72 35.60 3.96
3563 4006 5.549347 TGCAATGCACATTAATTTGGAAGT 58.451 33.333 2.72 0.00 31.71 3.01
3564 4007 6.695429 TGCAATGCACATTAATTTGGAAGTA 58.305 32.000 2.72 0.00 31.71 2.24
3565 4008 7.329499 TGCAATGCACATTAATTTGGAAGTAT 58.671 30.769 2.72 0.00 31.71 2.12
3566 4009 8.473219 TGCAATGCACATTAATTTGGAAGTATA 58.527 29.630 2.72 0.00 31.71 1.47
3567 4010 9.480053 GCAATGCACATTAATTTGGAAGTATAT 57.520 29.630 0.00 0.00 0.00 0.86
3579 4022 6.612247 TTGGAAGTATATTAACACATGCGG 57.388 37.500 0.00 0.00 0.00 5.69
3580 4023 5.919755 TGGAAGTATATTAACACATGCGGA 58.080 37.500 0.00 0.00 0.00 5.54
3581 4024 6.530120 TGGAAGTATATTAACACATGCGGAT 58.470 36.000 0.00 0.00 0.00 4.18
3582 4025 7.672240 TGGAAGTATATTAACACATGCGGATA 58.328 34.615 0.00 0.00 0.00 2.59
3583 4026 8.318412 TGGAAGTATATTAACACATGCGGATAT 58.682 33.333 0.00 0.00 0.00 1.63
3584 4027 9.162764 GGAAGTATATTAACACATGCGGATATT 57.837 33.333 0.00 0.00 0.00 1.28
3591 4034 7.956420 TTAACACATGCGGATATTAAGTAGG 57.044 36.000 0.00 0.00 0.00 3.18
3592 4035 5.801531 ACACATGCGGATATTAAGTAGGA 57.198 39.130 0.00 0.00 0.00 2.94
3593 4036 6.360370 ACACATGCGGATATTAAGTAGGAT 57.640 37.500 0.00 0.00 0.00 3.24
3594 4037 7.476540 ACACATGCGGATATTAAGTAGGATA 57.523 36.000 0.00 0.00 0.00 2.59
3595 4038 8.079211 ACACATGCGGATATTAAGTAGGATAT 57.921 34.615 0.00 0.00 0.00 1.63
3596 4039 8.540388 ACACATGCGGATATTAAGTAGGATATT 58.460 33.333 0.00 0.00 0.00 1.28
3621 4064 9.658475 TTATTTGCGTGTTATTATGTGATTAGC 57.342 29.630 0.00 0.00 0.00 3.09
3622 4065 6.670077 TTGCGTGTTATTATGTGATTAGCA 57.330 33.333 0.00 0.00 0.00 3.49
3637 4080 7.439157 GTGATTAGCACTATATTTGGCATGA 57.561 36.000 0.00 0.00 44.27 3.07
3638 4081 7.874940 GTGATTAGCACTATATTTGGCATGAA 58.125 34.615 0.00 0.00 44.27 2.57
3639 4082 8.352201 GTGATTAGCACTATATTTGGCATGAAA 58.648 33.333 0.00 0.00 44.27 2.69
3640 4083 9.081204 TGATTAGCACTATATTTGGCATGAAAT 57.919 29.630 0.00 0.00 0.00 2.17
3641 4084 9.918630 GATTAGCACTATATTTGGCATGAAATT 57.081 29.630 0.00 0.00 0.00 1.82
3645 4088 8.917088 AGCACTATATTTGGCATGAAATTAACT 58.083 29.630 0.00 0.00 0.00 2.24
3646 4089 8.971321 GCACTATATTTGGCATGAAATTAACTG 58.029 33.333 0.00 0.00 0.00 3.16
3647 4090 8.971321 CACTATATTTGGCATGAAATTAACTGC 58.029 33.333 0.00 0.00 0.00 4.40
3648 4091 8.694540 ACTATATTTGGCATGAAATTAACTGCA 58.305 29.630 0.00 0.00 36.34 4.41
3649 4092 9.701098 CTATATTTGGCATGAAATTAACTGCAT 57.299 29.630 0.00 0.00 36.34 3.96
3650 4093 6.671614 ATTTGGCATGAAATTAACTGCATG 57.328 33.333 0.21 0.21 40.69 4.06
3657 4100 6.914935 CATGAAATTAACTGCATGCTAAACG 58.085 36.000 20.33 4.73 32.73 3.60
3658 4101 6.007936 TGAAATTAACTGCATGCTAAACGT 57.992 33.333 20.33 5.37 0.00 3.99
3659 4102 5.855925 TGAAATTAACTGCATGCTAAACGTG 59.144 36.000 20.33 3.02 38.41 4.49
3660 4103 5.371115 AATTAACTGCATGCTAAACGTGT 57.629 34.783 20.33 3.63 37.62 4.49
3661 4104 4.822036 TTAACTGCATGCTAAACGTGTT 57.178 36.364 20.33 13.31 37.62 3.32
3662 4105 2.686558 ACTGCATGCTAAACGTGTTG 57.313 45.000 20.33 0.00 37.62 3.33
3663 4106 2.217750 ACTGCATGCTAAACGTGTTGA 58.782 42.857 20.33 0.00 37.62 3.18
3664 4107 2.224079 ACTGCATGCTAAACGTGTTGAG 59.776 45.455 20.33 5.48 37.62 3.02
3665 4108 1.069296 TGCATGCTAAACGTGTTGAGC 60.069 47.619 20.33 14.06 45.32 4.26
3667 4110 4.417240 GCTAAACGTGTTGAGCGC 57.583 55.556 6.34 0.00 37.32 5.92
3668 4111 1.860078 GCTAAACGTGTTGAGCGCT 59.140 52.632 11.27 11.27 37.32 5.92
3669 4112 0.179248 GCTAAACGTGTTGAGCGCTC 60.179 55.000 30.42 30.42 37.32 5.03
3670 4113 0.091344 CTAAACGTGTTGAGCGCTCG 59.909 55.000 30.75 21.89 0.00 5.03
3671 4114 0.318022 TAAACGTGTTGAGCGCTCGA 60.318 50.000 30.75 27.40 0.00 4.04
3672 4115 1.818221 AAACGTGTTGAGCGCTCGAC 61.818 55.000 39.44 39.44 42.86 4.20
3675 4118 4.673403 TGTTGAGCGCTCGACATT 57.327 50.000 42.95 9.77 46.09 2.71
3676 4119 2.153039 TGTTGAGCGCTCGACATTG 58.847 52.632 42.95 0.00 46.09 2.82
3677 4120 0.319469 TGTTGAGCGCTCGACATTGA 60.319 50.000 42.95 27.81 46.09 2.57
3678 4121 0.790207 GTTGAGCGCTCGACATTGAA 59.210 50.000 40.41 22.88 42.27 2.69
3679 4122 1.070821 TTGAGCGCTCGACATTGAAG 58.929 50.000 30.75 0.00 0.00 3.02
3680 4123 1.346538 GAGCGCTCGACATTGAAGC 59.653 57.895 23.61 0.00 0.00 3.86
3681 4124 1.354337 GAGCGCTCGACATTGAAGCA 61.354 55.000 23.61 0.00 0.00 3.91
3682 4125 1.059994 GCGCTCGACATTGAAGCAG 59.940 57.895 0.00 5.34 0.00 4.24
3683 4126 1.630244 GCGCTCGACATTGAAGCAGT 61.630 55.000 0.00 0.00 0.00 4.40
3684 4127 0.094216 CGCTCGACATTGAAGCAGTG 59.906 55.000 9.76 0.00 0.00 3.66
3685 4128 1.151668 GCTCGACATTGAAGCAGTGT 58.848 50.000 0.00 0.00 37.03 3.55
3686 4129 2.337583 GCTCGACATTGAAGCAGTGTA 58.662 47.619 0.00 0.00 34.57 2.90
3687 4130 2.346847 GCTCGACATTGAAGCAGTGTAG 59.653 50.000 0.00 0.00 34.57 2.74
3688 4131 2.926200 CTCGACATTGAAGCAGTGTAGG 59.074 50.000 0.00 0.00 34.57 3.18
3689 4132 2.299013 TCGACATTGAAGCAGTGTAGGT 59.701 45.455 0.00 0.00 34.57 3.08
3690 4133 2.668457 CGACATTGAAGCAGTGTAGGTC 59.332 50.000 0.00 0.00 34.57 3.85
3691 4134 2.668457 GACATTGAAGCAGTGTAGGTCG 59.332 50.000 0.00 0.00 34.57 4.79
3692 4135 2.037251 ACATTGAAGCAGTGTAGGTCGT 59.963 45.455 0.00 0.00 32.72 4.34
3693 4136 2.902705 TTGAAGCAGTGTAGGTCGTT 57.097 45.000 0.00 0.00 0.00 3.85
3694 4137 2.148916 TGAAGCAGTGTAGGTCGTTG 57.851 50.000 0.00 0.00 0.00 4.10
3695 4138 1.270094 TGAAGCAGTGTAGGTCGTTGG 60.270 52.381 0.00 0.00 0.00 3.77
3696 4139 1.000506 GAAGCAGTGTAGGTCGTTGGA 59.999 52.381 0.00 0.00 0.00 3.53
3697 4140 1.267121 AGCAGTGTAGGTCGTTGGAT 58.733 50.000 0.00 0.00 0.00 3.41
3698 4141 1.623811 AGCAGTGTAGGTCGTTGGATT 59.376 47.619 0.00 0.00 0.00 3.01
3699 4142 1.732259 GCAGTGTAGGTCGTTGGATTG 59.268 52.381 0.00 0.00 0.00 2.67
3700 4143 2.611971 GCAGTGTAGGTCGTTGGATTGA 60.612 50.000 0.00 0.00 0.00 2.57
3701 4144 2.993899 CAGTGTAGGTCGTTGGATTGAC 59.006 50.000 0.00 0.00 0.00 3.18
3702 4145 2.631062 AGTGTAGGTCGTTGGATTGACA 59.369 45.455 0.00 0.00 36.83 3.58
3703 4146 3.260884 AGTGTAGGTCGTTGGATTGACAT 59.739 43.478 0.00 0.00 36.83 3.06
3704 4147 3.370978 GTGTAGGTCGTTGGATTGACATG 59.629 47.826 0.00 0.00 36.83 3.21
3705 4148 3.259625 TGTAGGTCGTTGGATTGACATGA 59.740 43.478 0.00 0.00 36.83 3.07
3706 4149 3.634397 AGGTCGTTGGATTGACATGAT 57.366 42.857 0.00 0.00 36.83 2.45
3707 4150 3.955471 AGGTCGTTGGATTGACATGATT 58.045 40.909 0.00 0.00 36.83 2.57
3708 4151 4.335416 AGGTCGTTGGATTGACATGATTT 58.665 39.130 0.00 0.00 36.83 2.17
3709 4152 4.156556 AGGTCGTTGGATTGACATGATTTG 59.843 41.667 0.00 0.00 36.83 2.32
3710 4153 4.155826 GGTCGTTGGATTGACATGATTTGA 59.844 41.667 0.00 0.00 36.83 2.69
3711 4154 5.163622 GGTCGTTGGATTGACATGATTTGAT 60.164 40.000 0.00 0.00 36.83 2.57
3712 4155 5.740569 GTCGTTGGATTGACATGATTTGATG 59.259 40.000 0.00 0.00 35.20 3.07
3713 4156 5.038683 CGTTGGATTGACATGATTTGATGG 58.961 41.667 0.00 0.00 0.00 3.51
3714 4157 4.659111 TGGATTGACATGATTTGATGGC 57.341 40.909 0.00 0.00 0.00 4.40
3715 4158 3.385433 TGGATTGACATGATTTGATGGCC 59.615 43.478 0.00 0.00 29.16 5.36
3716 4159 3.551454 GGATTGACATGATTTGATGGCCG 60.551 47.826 0.00 0.00 29.16 6.13
3717 4160 2.416680 TGACATGATTTGATGGCCGA 57.583 45.000 0.00 0.00 29.16 5.54
3718 4161 2.291365 TGACATGATTTGATGGCCGAG 58.709 47.619 0.00 0.00 29.16 4.63
3719 4162 2.093021 TGACATGATTTGATGGCCGAGA 60.093 45.455 0.00 0.00 29.16 4.04
3720 4163 3.144506 GACATGATTTGATGGCCGAGAT 58.855 45.455 0.00 0.00 0.00 2.75
3721 4164 3.559069 ACATGATTTGATGGCCGAGATT 58.441 40.909 0.00 0.00 0.00 2.40
3722 4165 4.717877 ACATGATTTGATGGCCGAGATTA 58.282 39.130 0.00 0.00 0.00 1.75
3723 4166 5.132502 ACATGATTTGATGGCCGAGATTAA 58.867 37.500 0.00 0.00 0.00 1.40
3724 4167 5.771666 ACATGATTTGATGGCCGAGATTAAT 59.228 36.000 0.00 0.00 0.00 1.40
3725 4168 6.266103 ACATGATTTGATGGCCGAGATTAATT 59.734 34.615 0.00 0.00 0.00 1.40
3726 4169 6.075762 TGATTTGATGGCCGAGATTAATTG 57.924 37.500 0.00 0.00 0.00 2.32
3727 4170 4.916983 TTTGATGGCCGAGATTAATTGG 57.083 40.909 0.00 0.00 0.00 3.16
3728 4171 3.855255 TGATGGCCGAGATTAATTGGA 57.145 42.857 0.00 0.00 0.00 3.53
3729 4172 4.371624 TGATGGCCGAGATTAATTGGAT 57.628 40.909 0.00 0.00 0.00 3.41
3730 4173 4.326826 TGATGGCCGAGATTAATTGGATC 58.673 43.478 0.00 0.00 0.00 3.36
3731 4174 4.042062 TGATGGCCGAGATTAATTGGATCT 59.958 41.667 0.00 6.01 36.60 2.75
3732 4175 3.743521 TGGCCGAGATTAATTGGATCTG 58.256 45.455 9.96 4.52 34.13 2.90
3733 4176 2.485814 GGCCGAGATTAATTGGATCTGC 59.514 50.000 9.96 8.37 34.13 4.26
3734 4177 2.485814 GCCGAGATTAATTGGATCTGCC 59.514 50.000 9.96 0.00 34.13 4.85
3735 4178 3.077359 CCGAGATTAATTGGATCTGCCC 58.923 50.000 9.96 0.00 34.13 5.36
3736 4179 3.077359 CGAGATTAATTGGATCTGCCCC 58.923 50.000 9.96 0.00 34.13 5.80
3737 4180 3.244700 CGAGATTAATTGGATCTGCCCCT 60.245 47.826 9.96 0.00 34.13 4.79
3738 4181 4.734266 GAGATTAATTGGATCTGCCCCTT 58.266 43.478 9.96 0.00 34.13 3.95
3739 4182 5.143369 GAGATTAATTGGATCTGCCCCTTT 58.857 41.667 9.96 0.00 34.13 3.11
3740 4183 4.897670 AGATTAATTGGATCTGCCCCTTTG 59.102 41.667 5.62 0.00 32.79 2.77
3741 4184 1.870064 AATTGGATCTGCCCCTTTGG 58.130 50.000 0.00 0.00 34.97 3.28
3757 4200 6.867519 CCCTTTGGGTCTTTTTATATTGGT 57.132 37.500 0.00 0.00 38.25 3.67
3758 4201 7.964666 CCCTTTGGGTCTTTTTATATTGGTA 57.035 36.000 0.00 0.00 38.25 3.25
3759 4202 8.547481 CCCTTTGGGTCTTTTTATATTGGTAT 57.453 34.615 0.00 0.00 38.25 2.73
3760 4203 9.649316 CCCTTTGGGTCTTTTTATATTGGTATA 57.351 33.333 0.00 0.00 38.25 1.47
4072 4515 3.213506 TGTTCCTTGTGGTCATCTTGTG 58.786 45.455 0.00 0.00 34.23 3.33
4247 4690 1.691196 TTTTTCTGACCTGTGGGCTG 58.309 50.000 0.00 0.00 35.63 4.85
4248 4691 0.550914 TTTTCTGACCTGTGGGCTGT 59.449 50.000 0.00 0.00 35.63 4.40
4320 4763 8.925161 TTTCTGGTTTTCTGTCTGTAAATTTG 57.075 30.769 0.00 0.00 0.00 2.32
4322 4765 6.321181 TCTGGTTTTCTGTCTGTAAATTTGCT 59.679 34.615 7.80 0.00 0.00 3.91
4323 4766 7.500892 TCTGGTTTTCTGTCTGTAAATTTGCTA 59.499 33.333 7.80 0.00 0.00 3.49
4340 4783 6.909550 TTTGCTATATCAACCCAACAACTT 57.090 33.333 0.00 0.00 0.00 2.66
4372 4816 5.059161 TCAGACAACTCTGATTGGTCTTTG 58.941 41.667 2.53 0.00 46.79 2.77
4592 5041 7.698970 GTCTTTTCTGGTTTTCGACATGTAAAA 59.301 33.333 0.00 0.00 0.00 1.52
4732 5183 2.101415 AGCAGATTCGACATCGGAATCA 59.899 45.455 19.28 0.00 37.83 2.57
4776 5228 7.707893 ACATATTCTGCCACTCATTTAAAATGC 59.292 33.333 0.00 0.00 0.00 3.56
4857 5309 2.866085 ATCGCAGGCTCCTTGCTGAC 62.866 60.000 0.00 0.00 42.39 3.51
4870 5322 2.707849 GCTGACATGGCCCAAGCAG 61.708 63.158 0.00 4.22 42.56 4.24
4921 5373 1.915266 CTGTCCTGGGTGCTCTCCA 60.915 63.158 0.00 0.00 0.00 3.86
4950 5402 5.244626 TCGTTCCTAGTTTAGGTTACTGCTT 59.755 40.000 2.30 0.00 46.32 3.91
4951 5403 5.930569 CGTTCCTAGTTTAGGTTACTGCTTT 59.069 40.000 2.30 0.00 46.32 3.51
4952 5404 6.426025 CGTTCCTAGTTTAGGTTACTGCTTTT 59.574 38.462 2.30 0.00 46.32 2.27
5032 9186 6.668283 ACTGCTAACCCTCAGAAACTAGATTA 59.332 38.462 0.00 0.00 34.57 1.75
5035 9189 7.344612 TGCTAACCCTCAGAAACTAGATTATCA 59.655 37.037 0.00 0.00 0.00 2.15
5091 9245 8.685257 ATTATGTATGATCTTAGATGACCCCA 57.315 34.615 0.00 0.00 0.00 4.96
5093 9247 6.364568 TGTATGATCTTAGATGACCCCATG 57.635 41.667 0.00 0.00 32.09 3.66
5105 9259 2.350458 CCCCATGAACTTTGGCCCG 61.350 63.158 0.00 0.00 32.60 6.13
5146 9300 2.322355 TTTTGTTGGTGTTGCATGGG 57.678 45.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 5.348451 CAGGGCTTATGTATTTTGTGCAAAC 59.652 40.000 0.00 0.00 0.00 2.93
67 68 2.107031 GTGGTTACTGTTAAGTGGGGGT 59.893 50.000 0.00 0.00 37.19 4.95
71 72 3.566742 GGGTTGTGGTTACTGTTAAGTGG 59.433 47.826 0.00 0.00 37.19 4.00
81 82 3.943381 GCTATGGTTAGGGTTGTGGTTAC 59.057 47.826 0.00 0.00 0.00 2.50
91 92 5.514310 GGTTAGGGTTATGCTATGGTTAGGG 60.514 48.000 0.00 0.00 0.00 3.53
93 94 5.309806 AGGGTTAGGGTTATGCTATGGTTAG 59.690 44.000 0.00 0.00 0.00 2.34
102 103 2.158564 GGGGTTAGGGTTAGGGTTATGC 60.159 54.545 0.00 0.00 0.00 3.14
108 109 1.374572 TGTTGGGGTTAGGGTTAGGG 58.625 55.000 0.00 0.00 0.00 3.53
109 110 4.866327 TTATGTTGGGGTTAGGGTTAGG 57.134 45.455 0.00 0.00 0.00 2.69
110 111 7.283807 GTGTTATTATGTTGGGGTTAGGGTTAG 59.716 40.741 0.00 0.00 0.00 2.34
111 112 7.118060 GTGTTATTATGTTGGGGTTAGGGTTA 58.882 38.462 0.00 0.00 0.00 2.85
112 113 5.953548 GTGTTATTATGTTGGGGTTAGGGTT 59.046 40.000 0.00 0.00 0.00 4.11
113 114 5.015391 TGTGTTATTATGTTGGGGTTAGGGT 59.985 40.000 0.00 0.00 0.00 4.34
114 115 5.358725 GTGTGTTATTATGTTGGGGTTAGGG 59.641 44.000 0.00 0.00 0.00 3.53
115 116 5.946972 TGTGTGTTATTATGTTGGGGTTAGG 59.053 40.000 0.00 0.00 0.00 2.69
116 117 7.639113 ATGTGTGTTATTATGTTGGGGTTAG 57.361 36.000 0.00 0.00 0.00 2.34
117 118 8.958506 GTTATGTGTGTTATTATGTTGGGGTTA 58.041 33.333 0.00 0.00 0.00 2.85
118 119 7.093684 GGTTATGTGTGTTATTATGTTGGGGTT 60.094 37.037 0.00 0.00 0.00 4.11
119 120 6.378848 GGTTATGTGTGTTATTATGTTGGGGT 59.621 38.462 0.00 0.00 0.00 4.95
120 121 6.183360 GGGTTATGTGTGTTATTATGTTGGGG 60.183 42.308 0.00 0.00 0.00 4.96
121 122 6.605594 AGGGTTATGTGTGTTATTATGTTGGG 59.394 38.462 0.00 0.00 0.00 4.12
122 123 7.639113 AGGGTTATGTGTGTTATTATGTTGG 57.361 36.000 0.00 0.00 0.00 3.77
123 124 9.997482 GTTAGGGTTATGTGTGTTATTATGTTG 57.003 33.333 0.00 0.00 0.00 3.33
124 125 9.181061 GGTTAGGGTTATGTGTGTTATTATGTT 57.819 33.333 0.00 0.00 0.00 2.71
125 126 7.776500 GGGTTAGGGTTATGTGTGTTATTATGT 59.224 37.037 0.00 0.00 0.00 2.29
126 127 7.996644 AGGGTTAGGGTTATGTGTGTTATTATG 59.003 37.037 0.00 0.00 0.00 1.90
127 128 8.109560 AGGGTTAGGGTTATGTGTGTTATTAT 57.890 34.615 0.00 0.00 0.00 1.28
128 129 7.513560 AGGGTTAGGGTTATGTGTGTTATTA 57.486 36.000 0.00 0.00 0.00 0.98
129 130 6.397217 AGGGTTAGGGTTATGTGTGTTATT 57.603 37.500 0.00 0.00 0.00 1.40
130 131 7.341030 GTTAGGGTTAGGGTTATGTGTGTTAT 58.659 38.462 0.00 0.00 0.00 1.89
131 132 6.296374 GGTTAGGGTTAGGGTTATGTGTGTTA 60.296 42.308 0.00 0.00 0.00 2.41
132 133 5.515359 GGTTAGGGTTAGGGTTATGTGTGTT 60.515 44.000 0.00 0.00 0.00 3.32
133 134 4.019051 GGTTAGGGTTAGGGTTATGTGTGT 60.019 45.833 0.00 0.00 0.00 3.72
134 135 4.520179 GGTTAGGGTTAGGGTTATGTGTG 58.480 47.826 0.00 0.00 0.00 3.82
135 136 3.524789 GGGTTAGGGTTAGGGTTATGTGT 59.475 47.826 0.00 0.00 0.00 3.72
136 137 3.117776 GGGGTTAGGGTTAGGGTTATGTG 60.118 52.174 0.00 0.00 0.00 3.21
137 138 3.125656 GGGGTTAGGGTTAGGGTTATGT 58.874 50.000 0.00 0.00 0.00 2.29
138 139 3.124861 TGGGGTTAGGGTTAGGGTTATG 58.875 50.000 0.00 0.00 0.00 1.90
139 140 3.528905 GTTGGGGTTAGGGTTAGGGTTAT 59.471 47.826 0.00 0.00 0.00 1.89
140 141 2.918934 GTTGGGGTTAGGGTTAGGGTTA 59.081 50.000 0.00 0.00 0.00 2.85
141 142 1.712510 GTTGGGGTTAGGGTTAGGGTT 59.287 52.381 0.00 0.00 0.00 4.11
142 143 1.375610 GTTGGGGTTAGGGTTAGGGT 58.624 55.000 0.00 0.00 0.00 4.34
143 144 1.374572 TGTTGGGGTTAGGGTTAGGG 58.625 55.000 0.00 0.00 0.00 3.53
144 145 4.866327 TTATGTTGGGGTTAGGGTTAGG 57.134 45.455 0.00 0.00 0.00 2.69
145 146 7.283807 GTGTTATTATGTTGGGGTTAGGGTTAG 59.716 40.741 0.00 0.00 0.00 2.34
146 147 7.118060 GTGTTATTATGTTGGGGTTAGGGTTA 58.882 38.462 0.00 0.00 0.00 2.85
147 148 5.953548 GTGTTATTATGTTGGGGTTAGGGTT 59.046 40.000 0.00 0.00 0.00 4.11
148 149 5.015391 TGTGTTATTATGTTGGGGTTAGGGT 59.985 40.000 0.00 0.00 0.00 4.34
149 150 5.358725 GTGTGTTATTATGTTGGGGTTAGGG 59.641 44.000 0.00 0.00 0.00 3.53
150 151 5.946972 TGTGTGTTATTATGTTGGGGTTAGG 59.053 40.000 0.00 0.00 0.00 2.69
151 152 7.639113 ATGTGTGTTATTATGTTGGGGTTAG 57.361 36.000 0.00 0.00 0.00 2.34
152 153 8.958506 GTTATGTGTGTTATTATGTTGGGGTTA 58.041 33.333 0.00 0.00 0.00 2.85
153 154 7.093684 GGTTATGTGTGTTATTATGTTGGGGTT 60.094 37.037 0.00 0.00 0.00 4.11
154 155 6.378848 GGTTATGTGTGTTATTATGTTGGGGT 59.621 38.462 0.00 0.00 0.00 4.95
155 156 6.183360 GGGTTATGTGTGTTATTATGTTGGGG 60.183 42.308 0.00 0.00 0.00 4.96
156 157 6.605594 AGGGTTATGTGTGTTATTATGTTGGG 59.394 38.462 0.00 0.00 0.00 4.12
157 158 7.639113 AGGGTTATGTGTGTTATTATGTTGG 57.361 36.000 0.00 0.00 0.00 3.77
158 159 9.997482 GTTAGGGTTATGTGTGTTATTATGTTG 57.003 33.333 0.00 0.00 0.00 3.33
159 160 9.181061 GGTTAGGGTTATGTGTGTTATTATGTT 57.819 33.333 0.00 0.00 0.00 2.71
160 161 7.776500 GGGTTAGGGTTATGTGTGTTATTATGT 59.224 37.037 0.00 0.00 0.00 2.29
161 162 7.996644 AGGGTTAGGGTTATGTGTGTTATTATG 59.003 37.037 0.00 0.00 0.00 1.90
162 163 8.109560 AGGGTTAGGGTTATGTGTGTTATTAT 57.890 34.615 0.00 0.00 0.00 1.28
163 164 7.513560 AGGGTTAGGGTTATGTGTGTTATTA 57.486 36.000 0.00 0.00 0.00 0.98
164 165 6.397217 AGGGTTAGGGTTATGTGTGTTATT 57.603 37.500 0.00 0.00 0.00 1.40
165 166 7.341030 GTTAGGGTTAGGGTTATGTGTGTTAT 58.659 38.462 0.00 0.00 0.00 1.89
166 167 6.296374 GGTTAGGGTTAGGGTTATGTGTGTTA 60.296 42.308 0.00 0.00 0.00 2.41
167 168 5.515359 GGTTAGGGTTAGGGTTATGTGTGTT 60.515 44.000 0.00 0.00 0.00 3.32
168 169 4.019051 GGTTAGGGTTAGGGTTATGTGTGT 60.019 45.833 0.00 0.00 0.00 3.72
169 170 4.520179 GGTTAGGGTTAGGGTTATGTGTG 58.480 47.826 0.00 0.00 0.00 3.82
170 171 3.524789 GGGTTAGGGTTAGGGTTATGTGT 59.475 47.826 0.00 0.00 0.00 3.72
171 172 3.117776 GGGGTTAGGGTTAGGGTTATGTG 60.118 52.174 0.00 0.00 0.00 3.21
172 173 3.125656 GGGGTTAGGGTTAGGGTTATGT 58.874 50.000 0.00 0.00 0.00 2.29
173 174 3.124861 TGGGGTTAGGGTTAGGGTTATG 58.875 50.000 0.00 0.00 0.00 1.90
174 175 3.528905 GTTGGGGTTAGGGTTAGGGTTAT 59.471 47.826 0.00 0.00 0.00 1.89
175 176 2.918934 GTTGGGGTTAGGGTTAGGGTTA 59.081 50.000 0.00 0.00 0.00 2.85
176 177 1.712510 GTTGGGGTTAGGGTTAGGGTT 59.287 52.381 0.00 0.00 0.00 4.11
177 178 1.375610 GTTGGGGTTAGGGTTAGGGT 58.624 55.000 0.00 0.00 0.00 4.34
229 230 2.395619 TGCTAGGGTTAGGCTTCCTAC 58.604 52.381 0.00 0.00 35.63 3.18
232 233 2.801077 TTTGCTAGGGTTAGGCTTCC 57.199 50.000 0.00 0.00 0.00 3.46
288 290 3.831911 CCCTAGTTTTGGCTTGGATTTGA 59.168 43.478 0.00 0.00 34.09 2.69
331 334 4.836125 AAGAATTGTCACGTTTGCTCAT 57.164 36.364 0.00 0.00 0.00 2.90
340 345 6.465781 CGTTTTCATCCATAAGAATTGTCACG 59.534 38.462 0.00 0.00 0.00 4.35
351 356 4.714632 GATCCCCTCGTTTTCATCCATAA 58.285 43.478 0.00 0.00 0.00 1.90
439 444 6.144845 TCCCTCTCAAATCCTTCTCAAATT 57.855 37.500 0.00 0.00 0.00 1.82
462 467 4.162690 CGAAGCTAAGCGCCCCCT 62.163 66.667 2.29 0.00 40.39 4.79
476 485 2.204889 ACCCTACCCACACCCGAA 59.795 61.111 0.00 0.00 0.00 4.30
489 512 4.525028 TCCACACACCCCCACCCT 62.525 66.667 0.00 0.00 0.00 4.34
524 550 3.662117 CTTAGGCTGCCCCAACCCC 62.662 68.421 16.57 0.00 35.39 4.95
529 555 1.845664 TGTCACTTAGGCTGCCCCA 60.846 57.895 16.57 0.00 35.39 4.96
558 584 2.442056 CCTATCCCTTAGGCGCTGT 58.558 57.895 7.64 0.00 41.20 4.40
578 604 2.198406 CATGTAATGTGCAGCATTGGC 58.802 47.619 18.73 13.59 46.40 4.52
621 647 1.302431 CCCACATCCAGTCGTGCAA 60.302 57.895 0.00 0.00 0.00 4.08
655 718 1.805945 GGCTCTTAGGCGTCACACG 60.806 63.158 0.00 0.00 45.88 4.49
676 758 1.404181 CCACACTATACTGTGCAGCGT 60.404 52.381 6.92 0.00 40.33 5.07
689 771 1.945354 GACAGCTAGGCGCCACACTA 61.945 60.000 31.54 11.42 40.39 2.74
701 783 3.310307 TGTGGCGCCTGACAGCTA 61.310 61.111 29.70 0.07 29.71 3.32
734 816 7.587037 TCTGAACTGTCCTTGAAAAATTCAT 57.413 32.000 0.00 0.00 39.84 2.57
739 821 5.007626 CACGATCTGAACTGTCCTTGAAAAA 59.992 40.000 0.00 0.00 0.00 1.94
740 822 4.511454 CACGATCTGAACTGTCCTTGAAAA 59.489 41.667 0.00 0.00 0.00 2.29
741 823 4.058124 CACGATCTGAACTGTCCTTGAAA 58.942 43.478 0.00 0.00 0.00 2.69
751 835 5.446473 GCGAAATCAATTCACGATCTGAACT 60.446 40.000 9.00 0.00 41.87 3.01
752 836 4.725754 GCGAAATCAATTCACGATCTGAAC 59.274 41.667 9.00 0.00 41.87 3.18
753 837 4.201812 GGCGAAATCAATTCACGATCTGAA 60.202 41.667 9.18 9.18 43.28 3.02
754 838 3.309682 GGCGAAATCAATTCACGATCTGA 59.690 43.478 0.00 0.00 37.96 3.27
755 839 3.063861 TGGCGAAATCAATTCACGATCTG 59.936 43.478 0.00 0.00 37.96 2.90
756 840 3.270027 TGGCGAAATCAATTCACGATCT 58.730 40.909 0.00 0.00 37.96 2.75
757 841 3.673746 TGGCGAAATCAATTCACGATC 57.326 42.857 0.00 0.00 37.96 3.69
758 842 3.427503 GGTTGGCGAAATCAATTCACGAT 60.428 43.478 0.00 0.00 37.96 3.73
759 843 2.095466 GGTTGGCGAAATCAATTCACGA 60.095 45.455 0.00 0.00 37.96 4.35
760 844 2.095263 AGGTTGGCGAAATCAATTCACG 60.095 45.455 0.00 0.00 37.96 4.35
761 845 3.244976 CAGGTTGGCGAAATCAATTCAC 58.755 45.455 0.00 0.00 37.96 3.18
762 846 2.890311 ACAGGTTGGCGAAATCAATTCA 59.110 40.909 0.00 0.00 37.96 2.57
763 847 3.057596 TGACAGGTTGGCGAAATCAATTC 60.058 43.478 0.00 0.00 34.52 2.17
764 848 2.890311 TGACAGGTTGGCGAAATCAATT 59.110 40.909 0.00 0.00 0.00 2.32
765 849 2.513753 TGACAGGTTGGCGAAATCAAT 58.486 42.857 0.00 0.00 0.00 2.57
766 850 1.974265 TGACAGGTTGGCGAAATCAA 58.026 45.000 0.00 0.00 0.00 2.57
767 851 1.974265 TTGACAGGTTGGCGAAATCA 58.026 45.000 0.00 0.00 0.00 2.57
768 852 3.575965 ATTTGACAGGTTGGCGAAATC 57.424 42.857 0.00 0.00 31.39 2.17
769 853 4.462483 ACATATTTGACAGGTTGGCGAAAT 59.538 37.500 0.00 0.00 31.39 2.17
770 854 3.823873 ACATATTTGACAGGTTGGCGAAA 59.176 39.130 0.00 0.00 31.39 3.46
771 855 3.417101 ACATATTTGACAGGTTGGCGAA 58.583 40.909 0.00 0.00 32.34 4.70
772 856 3.066291 ACATATTTGACAGGTTGGCGA 57.934 42.857 0.00 0.00 0.00 5.54
773 857 3.848272 AACATATTTGACAGGTTGGCG 57.152 42.857 0.00 0.00 0.00 5.69
797 881 4.042311 TGTGGAGTAGGACATAGGCAAAAA 59.958 41.667 0.00 0.00 0.00 1.94
798 882 3.585289 TGTGGAGTAGGACATAGGCAAAA 59.415 43.478 0.00 0.00 0.00 2.44
799 883 3.178046 TGTGGAGTAGGACATAGGCAAA 58.822 45.455 0.00 0.00 0.00 3.68
800 884 2.827755 TGTGGAGTAGGACATAGGCAA 58.172 47.619 0.00 0.00 0.00 4.52
801 885 2.500098 GTTGTGGAGTAGGACATAGGCA 59.500 50.000 0.00 0.00 0.00 4.75
802 886 2.766828 AGTTGTGGAGTAGGACATAGGC 59.233 50.000 0.00 0.00 0.00 3.93
803 887 5.422214 AAAGTTGTGGAGTAGGACATAGG 57.578 43.478 0.00 0.00 0.00 2.57
824 908 1.216678 TGCCTCCTCCCAAGTCAAAAA 59.783 47.619 0.00 0.00 0.00 1.94
825 909 0.850100 TGCCTCCTCCCAAGTCAAAA 59.150 50.000 0.00 0.00 0.00 2.44
826 910 0.850100 TTGCCTCCTCCCAAGTCAAA 59.150 50.000 0.00 0.00 0.00 2.69
827 911 0.850100 TTTGCCTCCTCCCAAGTCAA 59.150 50.000 0.00 0.00 0.00 3.18
828 912 1.004745 GATTTGCCTCCTCCCAAGTCA 59.995 52.381 0.00 0.00 30.77 3.41
829 913 1.683319 GGATTTGCCTCCTCCCAAGTC 60.683 57.143 0.00 0.00 32.18 3.01
830 914 0.332972 GGATTTGCCTCCTCCCAAGT 59.667 55.000 0.00 0.00 32.18 3.16
831 915 0.332632 TGGATTTGCCTCCTCCCAAG 59.667 55.000 0.00 0.00 36.20 3.61
832 916 1.009997 ATGGATTTGCCTCCTCCCAA 58.990 50.000 0.00 0.00 36.20 4.12
833 917 1.905839 TATGGATTTGCCTCCTCCCA 58.094 50.000 0.00 0.00 36.20 4.37
834 918 3.308473 GGTATATGGATTTGCCTCCTCCC 60.308 52.174 0.00 0.00 36.20 4.30
835 919 3.330701 TGGTATATGGATTTGCCTCCTCC 59.669 47.826 0.00 0.00 36.20 4.30
836 920 4.566488 CCTGGTATATGGATTTGCCTCCTC 60.566 50.000 0.00 0.00 36.20 3.71
837 921 3.331889 CCTGGTATATGGATTTGCCTCCT 59.668 47.826 0.00 0.00 36.20 3.69
838 922 3.690460 CCTGGTATATGGATTTGCCTCC 58.310 50.000 0.00 0.00 37.63 4.30
839 923 3.084786 GCCTGGTATATGGATTTGCCTC 58.915 50.000 0.00 0.00 37.63 4.70
840 924 2.225117 GGCCTGGTATATGGATTTGCCT 60.225 50.000 0.00 0.00 37.63 4.75
841 925 2.171003 GGCCTGGTATATGGATTTGCC 58.829 52.381 0.00 0.00 37.10 4.52
842 926 3.160679 AGGCCTGGTATATGGATTTGC 57.839 47.619 3.11 0.00 0.00 3.68
843 927 4.279169 CACAAGGCCTGGTATATGGATTTG 59.721 45.833 14.01 0.97 0.00 2.32
844 928 4.079212 ACACAAGGCCTGGTATATGGATTT 60.079 41.667 14.01 0.00 0.00 2.17
845 929 3.463329 ACACAAGGCCTGGTATATGGATT 59.537 43.478 14.01 0.00 0.00 3.01
846 930 3.056080 ACACAAGGCCTGGTATATGGAT 58.944 45.455 14.01 0.00 0.00 3.41
915 1005 2.361567 GGTTGGGTACGGTCCGGAT 61.362 63.158 17.28 0.00 0.00 4.18
916 1006 2.996734 GGTTGGGTACGGTCCGGA 60.997 66.667 17.28 3.30 0.00 5.14
1162 1266 4.267503 GAGGTCCGGGATCGCGAC 62.268 72.222 31.16 24.17 36.53 5.19
1173 1277 1.829096 GAGGGAGTAGCGGAGGTCC 60.829 68.421 0.00 0.00 40.68 4.46
1334 1438 1.007580 TCGACACGAGAGAGGAATCG 58.992 55.000 0.00 0.00 44.36 3.34
1361 1465 1.781555 CACGTAACCTTGCTGCTCG 59.218 57.895 0.00 0.00 0.00 5.03
1367 1474 1.366854 GCCCTAGCACGTAACCTTGC 61.367 60.000 0.00 0.00 39.53 4.01
1368 1475 0.249398 AGCCCTAGCACGTAACCTTG 59.751 55.000 0.00 0.00 43.56 3.61
1370 1477 0.981943 AAAGCCCTAGCACGTAACCT 59.018 50.000 0.00 0.00 43.56 3.50
1380 1487 2.537401 CTCGTCCGTAAAAAGCCCTAG 58.463 52.381 0.00 0.00 0.00 3.02
1387 1494 0.034337 AGCAGCCTCGTCCGTAAAAA 59.966 50.000 0.00 0.00 0.00 1.94
1388 1495 0.034337 AAGCAGCCTCGTCCGTAAAA 59.966 50.000 0.00 0.00 0.00 1.52
1389 1496 0.889994 TAAGCAGCCTCGTCCGTAAA 59.110 50.000 0.00 0.00 0.00 2.01
1390 1497 0.454600 CTAAGCAGCCTCGTCCGTAA 59.545 55.000 0.00 0.00 0.00 3.18
1392 1499 2.711922 CCTAAGCAGCCTCGTCCGT 61.712 63.158 0.00 0.00 0.00 4.69
1393 1500 2.105128 CCTAAGCAGCCTCGTCCG 59.895 66.667 0.00 0.00 0.00 4.79
1394 1501 2.202946 GCCTAAGCAGCCTCGTCC 60.203 66.667 0.00 0.00 39.53 4.79
1395 1502 2.579201 TGCCTAAGCAGCCTCGTC 59.421 61.111 0.00 0.00 46.52 4.20
1408 1515 5.440610 AGATTAAAATCGACATCCTTGCCT 58.559 37.500 0.00 0.00 40.35 4.75
1438 1545 1.068333 CAAAACATTGCCTCGAGGGTG 60.068 52.381 32.06 8.25 37.43 4.61
1448 1555 0.881118 TCGGAGCCTCAAAACATTGC 59.119 50.000 0.00 0.00 0.00 3.56
1482 1589 4.579869 ACCACATAAACCTAAGCTGTCTG 58.420 43.478 0.00 0.00 0.00 3.51
1514 1623 6.599638 CACATATATCCTAGTCACCGATGAGA 59.400 42.308 0.00 0.00 34.75 3.27
1561 1674 2.533266 ACCTGCCTATATCTTGTGCG 57.467 50.000 0.00 0.00 0.00 5.34
1617 1730 7.148523 CGGTAGCACTTAAAACTAGGGTTAAAG 60.149 40.741 0.00 0.00 35.98 1.85
1643 1756 3.282885 CTCCCAGGAAAAATAGGAGCAC 58.717 50.000 0.00 0.00 37.88 4.40
1657 1770 3.633986 GCAAGTATCAAAATCCTCCCAGG 59.366 47.826 0.00 0.00 36.46 4.45
1659 1772 4.314522 TGCAAGTATCAAAATCCTCCCA 57.685 40.909 0.00 0.00 0.00 4.37
1660 1773 5.859205 ATTGCAAGTATCAAAATCCTCCC 57.141 39.130 4.94 0.00 0.00 4.30
1835 2276 8.948145 TCGCTAATTAGATAGAGGTATGAAGTC 58.052 37.037 16.85 0.00 0.00 3.01
1898 2339 1.611491 CAGGGTTAAAGCCGCTTTTGA 59.389 47.619 22.90 10.12 41.56 2.69
1902 2343 2.572209 TAACAGGGTTAAAGCCGCTT 57.428 45.000 0.00 0.00 41.56 4.68
1910 2351 4.709397 CCCATGAAAGCATAACAGGGTTAA 59.291 41.667 0.00 0.00 34.31 2.01
1939 2380 0.252881 AATGGTGCTCTCCTGGAGGA 60.253 55.000 23.00 9.39 42.08 3.71
1944 2385 4.326826 TCTTTTACAATGGTGCTCTCCTG 58.673 43.478 0.00 0.00 0.00 3.86
1966 2407 0.742505 CGCATGCCACATTTCCTGAT 59.257 50.000 13.15 0.00 0.00 2.90
1984 2425 0.168788 GGTTGCATCACACCACATCG 59.831 55.000 0.21 0.00 0.00 3.84
2033 2474 1.126488 ACGACATCATGATGCCCTCT 58.874 50.000 31.17 14.69 42.39 3.69
2034 2475 2.820059 TACGACATCATGATGCCCTC 57.180 50.000 31.17 21.21 42.39 4.30
2081 2523 7.572168 GCAGTTTCCTAAGTTCATTTCAGACTC 60.572 40.741 0.00 0.00 0.00 3.36
2138 2580 4.522405 TGGAACTGCATTTAAGCAAAGCTA 59.478 37.500 0.00 0.00 45.13 3.32
2288 2731 5.504994 GGCGAAACTTCACACAATAGTCAAA 60.505 40.000 0.00 0.00 0.00 2.69
2932 3375 3.282021 ACATCTGTTTCAGCACACAAGT 58.718 40.909 0.00 0.00 0.00 3.16
3506 3949 8.718102 TTGACTAGTAATAATCAAGGTTCAGC 57.282 34.615 0.00 0.00 0.00 4.26
3524 3967 5.234116 TGCATTGCACGTACATATTGACTAG 59.766 40.000 7.38 0.00 31.71 2.57
3525 3968 5.112686 TGCATTGCACGTACATATTGACTA 58.887 37.500 7.38 0.00 31.71 2.59
3526 3969 3.938334 TGCATTGCACGTACATATTGACT 59.062 39.130 7.38 0.00 31.71 3.41
3527 3970 4.271590 TGCATTGCACGTACATATTGAC 57.728 40.909 7.38 0.00 31.71 3.18
3540 3983 5.549347 ACTTCCAAATTAATGTGCATTGCA 58.451 33.333 7.38 7.38 35.60 4.08
3541 3984 7.775397 ATACTTCCAAATTAATGTGCATTGC 57.225 32.000 0.46 0.46 32.50 3.56
3553 3996 8.134895 CCGCATGTGTTAATATACTTCCAAATT 58.865 33.333 5.38 0.00 0.00 1.82
3554 3997 7.500892 TCCGCATGTGTTAATATACTTCCAAAT 59.499 33.333 5.38 0.00 0.00 2.32
3555 3998 6.824196 TCCGCATGTGTTAATATACTTCCAAA 59.176 34.615 5.38 0.00 0.00 3.28
3556 3999 6.350103 TCCGCATGTGTTAATATACTTCCAA 58.650 36.000 5.38 0.00 0.00 3.53
3557 4000 5.919755 TCCGCATGTGTTAATATACTTCCA 58.080 37.500 5.38 0.00 0.00 3.53
3558 4001 8.718102 ATATCCGCATGTGTTAATATACTTCC 57.282 34.615 5.38 0.00 0.00 3.46
3565 4008 9.647797 CCTACTTAATATCCGCATGTGTTAATA 57.352 33.333 5.38 1.11 0.00 0.98
3566 4009 8.372459 TCCTACTTAATATCCGCATGTGTTAAT 58.628 33.333 5.38 0.00 0.00 1.40
3567 4010 7.728148 TCCTACTTAATATCCGCATGTGTTAA 58.272 34.615 5.38 2.97 0.00 2.01
3568 4011 7.292713 TCCTACTTAATATCCGCATGTGTTA 57.707 36.000 5.38 0.00 0.00 2.41
3569 4012 6.169557 TCCTACTTAATATCCGCATGTGTT 57.830 37.500 5.38 0.00 0.00 3.32
3570 4013 5.801531 TCCTACTTAATATCCGCATGTGT 57.198 39.130 5.38 0.00 0.00 3.72
3571 4014 8.948631 AATATCCTACTTAATATCCGCATGTG 57.051 34.615 0.00 0.00 0.00 3.21
3595 4038 9.658475 GCTAATCACATAATAACACGCAAATAA 57.342 29.630 0.00 0.00 0.00 1.40
3596 4039 8.831550 TGCTAATCACATAATAACACGCAAATA 58.168 29.630 0.00 0.00 0.00 1.40
3597 4040 7.643764 GTGCTAATCACATAATAACACGCAAAT 59.356 33.333 0.00 0.00 44.98 2.32
3598 4041 6.964370 GTGCTAATCACATAATAACACGCAAA 59.036 34.615 0.00 0.00 44.98 3.68
3599 4042 6.482835 GTGCTAATCACATAATAACACGCAA 58.517 36.000 0.00 0.00 44.98 4.85
3600 4043 6.043327 GTGCTAATCACATAATAACACGCA 57.957 37.500 0.00 0.00 44.98 5.24
3613 4056 7.439157 TCATGCCAAATATAGTGCTAATCAC 57.561 36.000 0.00 0.00 45.98 3.06
3614 4057 8.462589 TTTCATGCCAAATATAGTGCTAATCA 57.537 30.769 0.00 0.00 0.00 2.57
3615 4058 9.918630 AATTTCATGCCAAATATAGTGCTAATC 57.081 29.630 0.00 0.00 0.00 1.75
3619 4062 8.917088 AGTTAATTTCATGCCAAATATAGTGCT 58.083 29.630 0.00 0.00 0.00 4.40
3620 4063 8.971321 CAGTTAATTTCATGCCAAATATAGTGC 58.029 33.333 0.00 0.00 0.00 4.40
3621 4064 8.971321 GCAGTTAATTTCATGCCAAATATAGTG 58.029 33.333 0.00 0.00 32.49 2.74
3622 4065 8.694540 TGCAGTTAATTTCATGCCAAATATAGT 58.305 29.630 6.13 0.00 37.89 2.12
3623 4066 9.701098 ATGCAGTTAATTTCATGCCAAATATAG 57.299 29.630 0.00 0.00 37.89 1.31
3624 4067 9.478768 CATGCAGTTAATTTCATGCCAAATATA 57.521 29.630 0.00 0.00 37.89 0.86
3625 4068 8.373048 CATGCAGTTAATTTCATGCCAAATAT 57.627 30.769 0.00 0.00 37.89 1.28
3626 4069 7.773864 CATGCAGTTAATTTCATGCCAAATA 57.226 32.000 0.00 0.00 37.89 1.40
3627 4070 6.671614 CATGCAGTTAATTTCATGCCAAAT 57.328 33.333 0.00 0.00 37.89 2.32
3633 4076 6.527722 ACGTTTAGCATGCAGTTAATTTCATG 59.472 34.615 21.98 6.29 39.29 3.07
3634 4077 6.527722 CACGTTTAGCATGCAGTTAATTTCAT 59.472 34.615 21.98 0.00 0.00 2.57
3635 4078 5.855925 CACGTTTAGCATGCAGTTAATTTCA 59.144 36.000 21.98 0.00 0.00 2.69
3636 4079 5.856455 ACACGTTTAGCATGCAGTTAATTTC 59.144 36.000 21.98 3.63 0.00 2.17
3637 4080 5.768317 ACACGTTTAGCATGCAGTTAATTT 58.232 33.333 21.98 0.00 0.00 1.82
3638 4081 5.371115 ACACGTTTAGCATGCAGTTAATT 57.629 34.783 21.98 0.00 0.00 1.40
3639 4082 5.049060 TCAACACGTTTAGCATGCAGTTAAT 60.049 36.000 21.98 0.00 0.00 1.40
3640 4083 4.273724 TCAACACGTTTAGCATGCAGTTAA 59.726 37.500 21.98 7.14 0.00 2.01
3641 4084 3.810386 TCAACACGTTTAGCATGCAGTTA 59.190 39.130 21.98 0.00 0.00 2.24
3642 4085 2.616376 TCAACACGTTTAGCATGCAGTT 59.384 40.909 21.98 9.36 0.00 3.16
3643 4086 2.217750 TCAACACGTTTAGCATGCAGT 58.782 42.857 21.98 8.61 0.00 4.40
3644 4087 2.843077 CTCAACACGTTTAGCATGCAG 58.157 47.619 21.98 7.96 0.00 4.41
3645 4088 1.069296 GCTCAACACGTTTAGCATGCA 60.069 47.619 21.98 2.77 39.07 3.96
3646 4089 1.606606 GCTCAACACGTTTAGCATGC 58.393 50.000 10.51 10.51 39.07 4.06
3647 4090 1.869503 CGCTCAACACGTTTAGCATG 58.130 50.000 14.54 0.00 39.16 4.06
3648 4091 0.165944 GCGCTCAACACGTTTAGCAT 59.834 50.000 14.54 0.00 39.16 3.79
3649 4092 0.878523 AGCGCTCAACACGTTTAGCA 60.879 50.000 2.64 0.00 39.16 3.49
3650 4093 0.179248 GAGCGCTCAACACGTTTAGC 60.179 55.000 31.91 6.11 36.68 3.09
3651 4094 0.091344 CGAGCGCTCAACACGTTTAG 59.909 55.000 34.69 12.34 0.00 1.85
3652 4095 0.318022 TCGAGCGCTCAACACGTTTA 60.318 50.000 34.69 4.78 0.00 2.01
3653 4096 1.590525 TCGAGCGCTCAACACGTTT 60.591 52.632 34.69 0.00 0.00 3.60
3654 4097 2.027024 TCGAGCGCTCAACACGTT 59.973 55.556 34.69 0.00 0.00 3.99
3655 4098 2.729862 GTCGAGCGCTCAACACGT 60.730 61.111 34.69 0.00 0.00 4.49
3656 4099 1.617755 AATGTCGAGCGCTCAACACG 61.618 55.000 31.93 20.44 0.00 4.49
3657 4100 0.179240 CAATGTCGAGCGCTCAACAC 60.179 55.000 31.93 24.81 0.00 3.32
3658 4101 0.319469 TCAATGTCGAGCGCTCAACA 60.319 50.000 31.47 31.47 0.00 3.33
3659 4102 0.790207 TTCAATGTCGAGCGCTCAAC 59.210 50.000 34.69 28.50 0.00 3.18
3660 4103 1.070821 CTTCAATGTCGAGCGCTCAA 58.929 50.000 34.69 17.41 0.00 3.02
3661 4104 1.354337 GCTTCAATGTCGAGCGCTCA 61.354 55.000 34.69 18.66 0.00 4.26
3662 4105 1.346538 GCTTCAATGTCGAGCGCTC 59.653 57.895 27.64 27.64 0.00 5.03
3663 4106 1.357258 CTGCTTCAATGTCGAGCGCT 61.357 55.000 11.27 11.27 39.23 5.92
3664 4107 1.059994 CTGCTTCAATGTCGAGCGC 59.940 57.895 0.00 0.00 39.23 5.92
3665 4108 0.094216 CACTGCTTCAATGTCGAGCG 59.906 55.000 0.00 0.00 39.23 5.03
3666 4109 1.151668 ACACTGCTTCAATGTCGAGC 58.848 50.000 0.00 0.00 36.95 5.03
3667 4110 2.926200 CCTACACTGCTTCAATGTCGAG 59.074 50.000 0.00 0.00 0.00 4.04
3668 4111 2.299013 ACCTACACTGCTTCAATGTCGA 59.701 45.455 0.00 0.00 0.00 4.20
3669 4112 2.668457 GACCTACACTGCTTCAATGTCG 59.332 50.000 0.00 0.00 0.00 4.35
3670 4113 2.668457 CGACCTACACTGCTTCAATGTC 59.332 50.000 0.00 0.00 0.00 3.06
3671 4114 2.037251 ACGACCTACACTGCTTCAATGT 59.963 45.455 0.00 0.00 0.00 2.71
3672 4115 2.688507 ACGACCTACACTGCTTCAATG 58.311 47.619 0.00 0.00 0.00 2.82
3673 4116 3.067106 CAACGACCTACACTGCTTCAAT 58.933 45.455 0.00 0.00 0.00 2.57
3674 4117 2.479837 CAACGACCTACACTGCTTCAA 58.520 47.619 0.00 0.00 0.00 2.69
3675 4118 1.270094 CCAACGACCTACACTGCTTCA 60.270 52.381 0.00 0.00 0.00 3.02
3676 4119 1.000506 TCCAACGACCTACACTGCTTC 59.999 52.381 0.00 0.00 0.00 3.86
3677 4120 1.045407 TCCAACGACCTACACTGCTT 58.955 50.000 0.00 0.00 0.00 3.91
3678 4121 1.267121 ATCCAACGACCTACACTGCT 58.733 50.000 0.00 0.00 0.00 4.24
3679 4122 1.732259 CAATCCAACGACCTACACTGC 59.268 52.381 0.00 0.00 0.00 4.40
3680 4123 2.993899 GTCAATCCAACGACCTACACTG 59.006 50.000 0.00 0.00 0.00 3.66
3681 4124 2.631062 TGTCAATCCAACGACCTACACT 59.369 45.455 0.00 0.00 0.00 3.55
3682 4125 3.034721 TGTCAATCCAACGACCTACAC 57.965 47.619 0.00 0.00 0.00 2.90
3683 4126 3.259625 TCATGTCAATCCAACGACCTACA 59.740 43.478 0.00 0.00 0.00 2.74
3684 4127 3.857052 TCATGTCAATCCAACGACCTAC 58.143 45.455 0.00 0.00 0.00 3.18
3685 4128 4.753516 ATCATGTCAATCCAACGACCTA 57.246 40.909 0.00 0.00 0.00 3.08
3686 4129 3.634397 ATCATGTCAATCCAACGACCT 57.366 42.857 0.00 0.00 0.00 3.85
3687 4130 4.155826 TCAAATCATGTCAATCCAACGACC 59.844 41.667 0.00 0.00 0.00 4.79
3688 4131 5.295431 TCAAATCATGTCAATCCAACGAC 57.705 39.130 0.00 0.00 0.00 4.34
3689 4132 5.163632 CCATCAAATCATGTCAATCCAACGA 60.164 40.000 0.00 0.00 0.00 3.85
3690 4133 5.038683 CCATCAAATCATGTCAATCCAACG 58.961 41.667 0.00 0.00 0.00 4.10
3691 4134 4.807304 GCCATCAAATCATGTCAATCCAAC 59.193 41.667 0.00 0.00 0.00 3.77
3692 4135 4.141892 GGCCATCAAATCATGTCAATCCAA 60.142 41.667 0.00 0.00 0.00 3.53
3693 4136 3.385433 GGCCATCAAATCATGTCAATCCA 59.615 43.478 0.00 0.00 0.00 3.41
3694 4137 3.551454 CGGCCATCAAATCATGTCAATCC 60.551 47.826 2.24 0.00 0.00 3.01
3695 4138 3.316029 TCGGCCATCAAATCATGTCAATC 59.684 43.478 2.24 0.00 0.00 2.67
3696 4139 3.289836 TCGGCCATCAAATCATGTCAAT 58.710 40.909 2.24 0.00 0.00 2.57
3697 4140 2.684374 CTCGGCCATCAAATCATGTCAA 59.316 45.455 2.24 0.00 0.00 3.18
3698 4141 2.093021 TCTCGGCCATCAAATCATGTCA 60.093 45.455 2.24 0.00 0.00 3.58
3699 4142 2.564771 TCTCGGCCATCAAATCATGTC 58.435 47.619 2.24 0.00 0.00 3.06
3700 4143 2.715749 TCTCGGCCATCAAATCATGT 57.284 45.000 2.24 0.00 0.00 3.21
3701 4144 5.694231 TTAATCTCGGCCATCAAATCATG 57.306 39.130 2.24 0.00 0.00 3.07
3702 4145 6.294899 CCAATTAATCTCGGCCATCAAATCAT 60.295 38.462 2.24 0.00 0.00 2.45
3703 4146 5.009911 CCAATTAATCTCGGCCATCAAATCA 59.990 40.000 2.24 0.00 0.00 2.57
3704 4147 5.241506 TCCAATTAATCTCGGCCATCAAATC 59.758 40.000 2.24 0.00 0.00 2.17
3705 4148 5.139727 TCCAATTAATCTCGGCCATCAAAT 58.860 37.500 2.24 0.00 0.00 2.32
3706 4149 4.531854 TCCAATTAATCTCGGCCATCAAA 58.468 39.130 2.24 0.00 0.00 2.69
3707 4150 4.163441 TCCAATTAATCTCGGCCATCAA 57.837 40.909 2.24 0.00 0.00 2.57
3708 4151 3.855255 TCCAATTAATCTCGGCCATCA 57.145 42.857 2.24 0.00 0.00 3.07
3709 4152 4.394300 CAGATCCAATTAATCTCGGCCATC 59.606 45.833 2.24 0.00 31.05 3.51
3710 4153 4.330250 CAGATCCAATTAATCTCGGCCAT 58.670 43.478 2.24 0.00 31.05 4.40
3711 4154 3.743521 CAGATCCAATTAATCTCGGCCA 58.256 45.455 2.24 0.00 31.05 5.36
3712 4155 2.485814 GCAGATCCAATTAATCTCGGCC 59.514 50.000 0.00 0.00 31.05 6.13
3713 4156 2.485814 GGCAGATCCAATTAATCTCGGC 59.514 50.000 0.62 2.99 31.05 5.54
3714 4157 3.077359 GGGCAGATCCAATTAATCTCGG 58.923 50.000 0.62 0.00 36.21 4.63
3715 4158 3.077359 GGGGCAGATCCAATTAATCTCG 58.923 50.000 0.62 0.00 36.21 4.04
3716 4159 4.379302 AGGGGCAGATCCAATTAATCTC 57.621 45.455 0.62 0.00 36.21 2.75
3717 4160 4.821532 AAGGGGCAGATCCAATTAATCT 57.178 40.909 0.00 0.00 36.21 2.40
3718 4161 4.039609 CCAAAGGGGCAGATCCAATTAATC 59.960 45.833 0.00 0.00 36.21 1.75
3719 4162 3.969312 CCAAAGGGGCAGATCCAATTAAT 59.031 43.478 0.00 0.00 36.21 1.40
3720 4163 3.373830 CCAAAGGGGCAGATCCAATTAA 58.626 45.455 0.00 0.00 36.21 1.40
3721 4164 3.030873 CCAAAGGGGCAGATCCAATTA 57.969 47.619 0.00 0.00 36.21 1.40
3722 4165 1.870064 CCAAAGGGGCAGATCCAATT 58.130 50.000 0.00 0.00 36.21 2.32
3723 4166 3.621419 CCAAAGGGGCAGATCCAAT 57.379 52.632 0.00 0.00 36.21 3.16
3740 4183 9.462606 CCCATCTATACCAATATAAAAAGACCC 57.537 37.037 0.00 0.00 0.00 4.46
3741 4184 9.462606 CCCCATCTATACCAATATAAAAAGACC 57.537 37.037 0.00 0.00 0.00 3.85
3752 4195 9.975218 GTTGTAATTATCCCCATCTATACCAAT 57.025 33.333 0.00 0.00 0.00 3.16
3753 4196 9.177927 AGTTGTAATTATCCCCATCTATACCAA 57.822 33.333 0.00 0.00 0.00 3.67
3754 4197 8.751215 AGTTGTAATTATCCCCATCTATACCA 57.249 34.615 0.00 0.00 0.00 3.25
3760 4203 9.845214 AGTATCTAGTTGTAATTATCCCCATCT 57.155 33.333 0.00 0.00 0.00 2.90
3796 4239 5.188434 CAGCTCCAAAAGAACCATATCAGA 58.812 41.667 0.00 0.00 0.00 3.27
4072 4515 3.026311 GCGCAGTTGCAACAGCAC 61.026 61.111 36.00 27.56 40.93 4.40
4242 4685 0.527565 CAAGTAACATGCCACAGCCC 59.472 55.000 0.00 0.00 38.69 5.19
4243 4686 0.527565 CCAAGTAACATGCCACAGCC 59.472 55.000 0.00 0.00 38.69 4.85
4244 4687 1.533625 TCCAAGTAACATGCCACAGC 58.466 50.000 0.00 0.00 40.48 4.40
4245 4688 6.293626 GCTATAATCCAAGTAACATGCCACAG 60.294 42.308 0.00 0.00 0.00 3.66
4246 4689 5.530915 GCTATAATCCAAGTAACATGCCACA 59.469 40.000 0.00 0.00 0.00 4.17
4247 4690 5.530915 TGCTATAATCCAAGTAACATGCCAC 59.469 40.000 0.00 0.00 0.00 5.01
4248 4691 5.689835 TGCTATAATCCAAGTAACATGCCA 58.310 37.500 0.00 0.00 0.00 4.92
4320 4763 6.699575 ATCAAGTTGTTGGGTTGATATAGC 57.300 37.500 2.11 0.00 38.78 2.97
4322 4765 8.310382 CCAAAATCAAGTTGTTGGGTTGATATA 58.690 33.333 13.47 0.00 39.47 0.86
4323 4766 7.160726 CCAAAATCAAGTTGTTGGGTTGATAT 58.839 34.615 13.47 0.00 39.47 1.63
4372 4816 2.102252 CAGGCTCTCCAACCATCTAGAC 59.898 54.545 0.00 0.00 33.74 2.59
4592 5041 7.125507 AGGAGTCATCTCACAAAGATTCAGTAT 59.874 37.037 0.00 0.00 42.30 2.12
4640 5089 0.965866 TGTCTACAGGCTCTCCACCG 60.966 60.000 0.00 0.00 33.74 4.94
4732 5183 0.037605 GTTGTGCCTACACCGCTAGT 60.038 55.000 0.00 0.00 46.86 2.57
4776 5228 5.882557 AGTGATAGCTTGAATTGGTTAGGTG 59.117 40.000 0.00 0.00 0.00 4.00
4960 5412 1.957877 CAGTAACCTTCCCCGCAAAAA 59.042 47.619 0.00 0.00 0.00 1.94
4961 5413 1.611519 CAGTAACCTTCCCCGCAAAA 58.388 50.000 0.00 0.00 0.00 2.44
4962 5414 0.891904 GCAGTAACCTTCCCCGCAAA 60.892 55.000 0.00 0.00 0.00 3.68
4963 5415 1.302993 GCAGTAACCTTCCCCGCAA 60.303 57.895 0.00 0.00 0.00 4.85
4964 5416 0.905809 TAGCAGTAACCTTCCCCGCA 60.906 55.000 0.00 0.00 0.00 5.69
4965 5417 0.461516 GTAGCAGTAACCTTCCCCGC 60.462 60.000 0.00 0.00 0.00 6.13
4966 5418 0.177373 GGTAGCAGTAACCTTCCCCG 59.823 60.000 0.00 0.00 33.97 5.73
4967 5419 0.545171 GGGTAGCAGTAACCTTCCCC 59.455 60.000 0.00 0.00 34.75 4.81
4968 5420 1.209747 CAGGGTAGCAGTAACCTTCCC 59.790 57.143 0.00 0.00 44.96 3.97
4969 5421 2.185387 TCAGGGTAGCAGTAACCTTCC 58.815 52.381 0.00 0.00 44.96 3.46
4970 5422 3.975168 TTCAGGGTAGCAGTAACCTTC 57.025 47.619 0.00 0.00 44.96 3.46
4971 5423 3.651423 ACTTTCAGGGTAGCAGTAACCTT 59.349 43.478 0.00 0.00 44.96 3.50
5091 9245 1.937191 AATTCCGGGCCAAAGTTCAT 58.063 45.000 4.39 0.00 0.00 2.57
5093 9247 3.368013 CCTTAAATTCCGGGCCAAAGTTC 60.368 47.826 4.39 0.00 0.00 3.01
5105 9259 7.744087 AAAAACTTGGCAATCCTTAAATTCC 57.256 32.000 0.00 0.00 0.00 3.01
5130 9284 1.323412 GTACCCATGCAACACCAACA 58.677 50.000 0.00 0.00 0.00 3.33
5146 9300 2.035576 CCACTTACATCCCTAGGCGTAC 59.964 54.545 2.05 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.