AutoCloner

Multiple sequence alignment - TraesCS4D01G291200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4D01G291200	chr4D	100.000	2444	0	0	1	2444	462548172	462550615	0.000000e+00	4514.0
1	TraesCS4D01G291200	chr4D	87.861	1038	92	14	704	1719	462497945	462498970	0.000000e+00	1188.0
2	TraesCS4D01G291200	chr4D	90.184	326	30	2	228	553	20141648	20141325	8.080000e-115	424.0
3	TraesCS4D01G291200	chr4D	89.666	329	33	1	228	556	20077432	20077105	3.760000e-113	418.0
4	TraesCS4D01G291200	chr4D	91.282	195	14	2	4	195	463333709	463333515	1.860000e-66	263.0
5	TraesCS4D01G291200	chr4D	79.537	259	28	16	5	243	102387102	102387355	6.990000e-36	161.0
6	TraesCS4D01G291200	chr4D	97.727	44	1	0	200	243	463333491	463333448	2.610000e-10	76.8
7	TraesCS4D01G291200	chr4B	88.935	2160	161	34	343	2444	578408458	578406319	0.000000e+00	2593.0
8	TraesCS4D01G291200	chr4B	88.894	2161	161	35	343	2444	578480717	578478577	0.000000e+00	2588.0
9	TraesCS4D01G291200	chr4B	89.024	2050	147	34	453	2444	578350560	578348531	0.000000e+00	2468.0
10	TraesCS4D01G291200	chr4B	88.789	1900	135	35	453	2294	578432742	578430863	0.000000e+00	2257.0
11	TraesCS4D01G291200	chr4B	86.934	1171	114	18	570	1719	578532583	578531431	0.000000e+00	1279.0
12	TraesCS4D01G291200	chr4B	87.536	1043	96	19	697	1719	578373415	578372387	0.000000e+00	1175.0
13	TraesCS4D01G291200	chr4B	89.226	594	49	2	1860	2444	578433808	578433221	0.000000e+00	728.0
14	TraesCS4D01G291200	chr4B	95.593	295	8	4	1	292	578351187	578350895	3.680000e-128	468.0
15	TraesCS4D01G291200	chr4B	95.593	295	8	4	1	292	578408740	578408448	3.680000e-128	468.0
16	TraesCS4D01G291200	chr4B	95.593	295	8	4	1	292	578435359	578435067	3.680000e-128	468.0
17	TraesCS4D01G291200	chr4B	95.593	295	8	4	1	292	578480999	578480707	3.680000e-128	468.0
18	TraesCS4D01G291200	chr4B	97.727	44	1	0	200	243	578668629	578668586	2.610000e-10	76.8
19	TraesCS4D01G291200	chr4A	90.115	1831	153	14	1	1815	6491367	6493185	0.000000e+00	2353.0
20	TraesCS4D01G291200	chr4A	86.967	1197	103	29	572	1744	6460380	6461547	0.000000e+00	1297.0
21	TraesCS4D01G291200	chr4A	86.605	1187	116	22	545	1714	6476036	6477196	0.000000e+00	1271.0
22	TraesCS4D01G291200	chr4A	85.893	1198	102	39	572	1744	6435190	6436345	0.000000e+00	1214.0
23	TraesCS4D01G291200	chr4A	90.909	143	12	1	1815	1957	6493579	6493720	8.920000e-45	191.0
24	TraesCS4D01G291200	chr4A	79.386	228	21	17	32	243	472651849	472651632	1.180000e-28	137.0
25	TraesCS4D01G291200	chrUn	88.992	1944	143	32	409	2294	363045365	363043435	0.000000e+00	2338.0
26	TraesCS4D01G291200	chrUn	89.057	594	50	2	1860	2444	310407554	310406967	0.000000e+00	723.0
27	TraesCS4D01G291200	chr1B	92.434	304	22	1	246	548	683991873	683992176	1.340000e-117	433.0
28	TraesCS4D01G291200	chr7D	92.000	300	24	0	244	543	141345336	141345635	2.910000e-114	422.0
29	TraesCS4D01G291200	chr7D	90.323	310	28	2	246	555	613016551	613016244	2.930000e-109	405.0
30	TraesCS4D01G291200	chr7D	86.239	109	13	1	5	113	351631254	351631148	1.540000e-22	117.0
31	TraesCS4D01G291200	chr2B	89.815	324	30	3	228	551	798707242	798707562	1.750000e-111	412.0
32	TraesCS4D01G291200	chr2B	85.260	346	44	6	1999	2338	105903063	105902719	1.390000e-92	350.0
33	TraesCS4D01G291200	chr6A	84.084	333	49	4	1999	2328	604256721	604256390	3.920000e-83	318.0
34	TraesCS4D01G291200	chr3D	80.934	257	27	10	4	243	4400975	4400724	1.490000e-42	183.0
35	TraesCS4D01G291200	chr3A	80.237	253	30	9	7	242	10208674	10208425	3.230000e-39	172.0
36	TraesCS4D01G291200	chr3B	100.000	30	0	0	2370	2399	138367674	138367703	3.390000e-04	56.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4D01G291200	chr4D	462548172	462550615	2443	False	4514.0	4514	100.000000	1	2444	1	chr4D.!!$F3	2443
1	TraesCS4D01G291200	chr4D	462497945	462498970	1025	False	1188.0	1188	87.861000	704	1719	1	chr4D.!!$F2	1015
2	TraesCS4D01G291200	chr4B	578406319	578408740	2421	True	1530.5	2593	92.264000	1	2444	2	chr4B.!!$R5	2443
3	TraesCS4D01G291200	chr4B	578478577	578480999	2422	True	1528.0	2588	92.243500	1	2444	2	chr4B.!!$R7	2443
4	TraesCS4D01G291200	chr4B	578348531	578351187	2656	True	1468.0	2468	92.308500	1	2444	2	chr4B.!!$R4	2443
5	TraesCS4D01G291200	chr4B	578531431	578532583	1152	True	1279.0	1279	86.934000	570	1719	1	chr4B.!!$R2	1149
6	TraesCS4D01G291200	chr4B	578372387	578373415	1028	True	1175.0	1175	87.536000	697	1719	1	chr4B.!!$R1	1022
7	TraesCS4D01G291200	chr4B	578430863	578435359	4496	True	1151.0	2257	91.202667	1	2444	3	chr4B.!!$R6	2443
8	TraesCS4D01G291200	chr4A	6460380	6461547	1167	False	1297.0	1297	86.967000	572	1744	1	chr4A.!!$F2	1172
9	TraesCS4D01G291200	chr4A	6491367	6493720	2353	False	1272.0	2353	90.512000	1	1957	2	chr4A.!!$F4	1956
10	TraesCS4D01G291200	chr4A	6476036	6477196	1160	False	1271.0	1271	86.605000	545	1714	1	chr4A.!!$F3	1169
11	TraesCS4D01G291200	chr4A	6435190	6436345	1155	False	1214.0	1214	85.893000	572	1744	1	chr4A.!!$F1	1172
12	TraesCS4D01G291200	chrUn	363043435	363045365	1930	True	2338.0	2338	88.992000	409	2294	1	chrUn.!!$R2	1885
13	TraesCS4D01G291200	chrUn	310406967	310407554	587	True	723.0	723	89.057000	1860	2444	1	chrUn.!!$R1	584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
281	285	0.462047	GATGGTTAGCGGGACTGTGG	60.462	60.0	0.0	0.0	0.0	4.17	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1478	3771	0.651031	CTCACAGAGACGCATGCATG	59.349	55.0	22.7	22.7	0.0	4.06	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
257	261	3.262405	AGAATTAGGCGAACCAACCTGTA	59.738	43.478	0.00	0.00	39.06	2.74
271	275	3.629142	ACCTGTAGTTGGATGGTTAGC	57.371	47.619	0.00	0.00	0.00	3.09
281	285	0.462047	GATGGTTAGCGGGACTGTGG	60.462	60.000	0.00	0.00	0.00	4.17
285	289	1.202498	GGTTAGCGGGACTGTGGTATC	60.202	57.143	0.00	0.00	0.00	2.24
297	301	3.873812	GGTATCCCCAGCCCACCG	61.874	72.222	0.00	0.00	0.00	4.94
298	302	3.873812	GTATCCCCAGCCCACCGG	61.874	72.222	0.00	0.00	0.00	5.28
299	303	4.096816	TATCCCCAGCCCACCGGA	62.097	66.667	9.46	0.00	0.00	5.14
310	314	1.481056	CCCACCGGAGTTCAAGTCCT	61.481	60.000	9.46	0.00	35.52	3.85
320	324	2.031012	CAAGTCCTGGTGCTCGCA	59.969	61.111	0.00	0.00	0.00	5.10
336	340	5.008613	GTGCTCGCATTTATTCCTGGAATTA	59.991	40.000	25.76	15.19	33.95	1.40
357	361	1.622607	TTCAGGATTCCCGGCGATGT	61.623	55.000	9.30	0.00	37.58	3.06
371	375	1.012086	CGATGTGCATTCAGTGAGGG	58.988	55.000	0.00	0.00	0.00	4.30
404	409	1.807886	GACGACGAGGTGCCTATGT	59.192	57.895	0.00	0.00	0.00	2.29
487	2718	2.350760	GTGCGTGTGTGCGTTCAC	60.351	61.111	5.43	5.43	43.40	3.18
507	2738	2.962253	GAGGGAGTGTATGCGCGC	60.962	66.667	27.26	27.26	0.00	6.86
681	2930	5.891451	TGAGGATGTGAACTATTGACGTAG	58.109	41.667	0.00	0.00	0.00	3.51
748	2997	7.833682	TGATTATGCAGATTTGAGGAAGGTTTA	59.166	33.333	0.00	0.00	0.00	2.01
751	3000	6.916360	TGCAGATTTGAGGAAGGTTTAAAT	57.084	33.333	0.00	0.00	0.00	1.40
752	3001	8.593945	ATGCAGATTTGAGGAAGGTTTAAATA	57.406	30.769	0.00	0.00	0.00	1.40
917	3175	5.424757	TCGTTGGGCAGCATATATAATACC	58.575	41.667	0.00	0.00	0.00	2.73
992	3266	5.389778	TGATACAATTTGTAAGCAGCAACG	58.610	37.500	12.96	0.00	36.31	4.10
1037	3312	1.137872	GCTCCTCATCGTCTTCATGGT	59.862	52.381	0.00	0.00	0.00	3.55
1040	3315	4.680708	GCTCCTCATCGTCTTCATGGTTTA	60.681	45.833	0.00	0.00	0.00	2.01
1081	3358	0.662374	CGACACAGCGTACGACCTTT	60.662	55.000	21.65	0.00	0.00	3.11
1233	3510	3.312421	CACACAAGATTCGGTTTGACAGT	59.688	43.478	0.00	0.00	0.00	3.55
1346	3628	0.315251	CAGTCGGTGACAAGCTCAGA	59.685	55.000	0.00	0.00	34.60	3.27
1367	3649	2.293677	TTACTGGTAGTGAGCATGCG	57.706	50.000	13.01	0.00	31.28	4.73
1430	3712	2.439156	CCCAGGTGCAGCTAAGGC	60.439	66.667	19.71	0.00	39.06	4.35
1478	3771	7.756722	GCATGCCTTTCATATAATGTATCCAAC	59.243	37.037	6.36	0.00	33.19	3.77
1506	3799	0.667792	GTCTCTGTGAGTCCGTTGCC	60.668	60.000	0.00	0.00	0.00	4.52
1626	3924	2.052782	AGATATTGCAACGGGTTCCC	57.947	50.000	0.00	0.00	0.00	3.97
1793	4095	6.125029	TCGTAGGGCTTACAGTAAAGATAGT	58.875	40.000	7.59	0.00	32.27	2.12
1871	4597	9.394767	TGACACTGACATATAAATAAGCATTGT	57.605	29.630	0.00	0.00	0.00	2.71
1934	4660	9.965824	ATTTTGTAAGATATTTGAATAAGCGGG	57.034	29.630	0.00	0.00	0.00	6.13
1938	4664	4.074970	AGATATTTGAATAAGCGGGGCAG	58.925	43.478	0.00	0.00	0.00	4.85
1984	4719	6.148150	CCGTAAAGAAATATAATTAGGCGCCA	59.852	38.462	31.54	9.64	0.00	5.69
1988	4723	8.816640	AAAGAAATATAATTAGGCGCCAAATG	57.183	30.769	31.54	0.00	0.00	2.32
1990	4725	7.370383	AGAAATATAATTAGGCGCCAAATGTG	58.630	34.615	31.54	0.00	0.00	3.21
2014	4749	1.070821	TGCAGACGCAGATTTTCGAG	58.929	50.000	0.00	0.00	45.36	4.04
2071	4806	1.812571	GGCGATGGCAAAAGAGAAAGA	59.187	47.619	1.01	0.00	42.47	2.52
2091	4826	5.966853	AGAAGGAAGGAGAGAAAATAGGG	57.033	43.478	0.00	0.00	0.00	3.53
2105	4840	0.543174	ATAGGGAGGATGGAGTCGCC	60.543	60.000	0.00	0.00	37.10	5.54
2158	4893	2.472488	GTGTTGGATTCGTACGTTTCGT	59.528	45.455	16.05	0.00	44.35	3.85
2163	4898	2.089581	GGATTCGTACGTTTCGTGTGTC	59.910	50.000	16.05	1.91	41.39	3.67
2173	4908	0.536687	TTCGTGTGTCCGGACTCTCT	60.537	55.000	33.39	0.00	0.00	3.10
2184	4919	1.481363	CGGACTCTCTTAAACCTCCCC	59.519	57.143	0.00	0.00	0.00	4.81
2196	4931	1.231963	ACCTCCCCCACTTTTGTCTT	58.768	50.000	0.00	0.00	0.00	3.01
2209	4944	0.941542	TTGTCTTCGTTTTGCCGGAG	59.058	50.000	5.05	0.00	34.66	4.63
2216	4951	1.226018	GTTTTGCCGGAGAATCGCG	60.226	57.895	5.05	0.00	34.37	5.87
2217	4952	3.034370	TTTTGCCGGAGAATCGCGC	62.034	57.895	5.05	0.00	34.37	6.86
2227	4962	4.440127	AATCGCGCCCGTACCGTT	62.440	61.111	0.00	0.00	35.54	4.44
2234	4969	4.440127	CCCGTACCGTTCCGTGGG	62.440	72.222	0.00	0.00	0.00	4.61
2246	4981	1.523032	CCGTGGGCCGATAAAGGAC	60.523	63.158	0.00	0.00	39.56	3.85
2247	4982	1.520666	CGTGGGCCGATAAAGGACT	59.479	57.895	0.00	0.00	39.91	3.85
2252	4987	1.152383	GGCCGATAAAGGACTGCGTC	61.152	60.000	0.00	0.79	36.04	5.19
2258	4993	1.518056	TAAAGGACTGCGTCGGACGT	61.518	55.000	28.75	11.89	44.73	4.34
2295	5030	2.169146	CGCGGTCCGAATGGTTACC	61.169	63.158	17.49	0.00	40.02	2.85
2296	5031	1.816679	GCGGTCCGAATGGTTACCC	60.817	63.158	17.49	0.00	36.30	3.69
2341	5076	8.830915	TGGAGATGCCCTAACATTTAATTAAA	57.169	30.769	12.85	12.85	34.97	1.52
2367	5102	3.220507	ACAAAATATCGACGTCGGTGA	57.779	42.857	35.05	21.50	40.29	4.02
2441	5176	3.507233	CACCATGCCAAATAATATCCGCT	59.493	43.478	0.00	0.00	0.00	5.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
257	261	0.252197	GTCCCGCTAACCATCCAACT	59.748	55.000	0.00	0.00	0.00	3.16
281	285	3.873812	CCGGTGGGCTGGGGATAC	61.874	72.222	0.00	0.00	37.50	2.24
287	291	3.190738	TTGAACTCCGGTGGGCTGG	62.191	63.158	8.63	0.00	42.59	4.85
288	292	1.672356	CTTGAACTCCGGTGGGCTG	60.672	63.158	8.63	0.00	0.00	4.85
297	301	0.398318	AGCACCAGGACTTGAACTCC	59.602	55.000	0.00	0.00	0.00	3.85
298	302	1.802069	GAGCACCAGGACTTGAACTC	58.198	55.000	0.00	0.00	0.00	3.01
299	303	0.034059	CGAGCACCAGGACTTGAACT	59.966	55.000	0.00	0.00	0.00	3.01
310	314	2.016318	CAGGAATAAATGCGAGCACCA	58.984	47.619	0.00	0.00	0.00	4.17
336	340	0.474184	ATCGCCGGGAATCCTGAAAT	59.526	50.000	10.24	0.00	29.82	2.17
357	361	0.615331	GTCTCCCCTCACTGAATGCA	59.385	55.000	0.00	0.00	0.00	3.96
432	1389	0.815734	CCTCCGAAAGACTAAGCCGA	59.184	55.000	0.00	0.00	0.00	5.54
438	1395	1.919240	TGAGCACCTCCGAAAGACTA	58.081	50.000	0.00	0.00	0.00	2.59
487	2718	1.227380	GCGCATACACTCCCTCCTG	60.227	63.158	0.30	0.00	0.00	3.86
491	2722	4.873129	CGCGCGCATACACTCCCT	62.873	66.667	32.61	0.00	0.00	4.20
493	2724	0.386352	TATACGCGCGCATACACTCC	60.386	55.000	32.58	0.00	0.00	3.85
507	2738	0.431233	GACGCAAGCGCTCATATACG	59.569	55.000	12.06	11.14	44.19	3.06
589	2829	1.665679	GTCCACCGCAACATGTATGAG	59.334	52.381	0.00	1.90	0.00	2.90
602	2842	1.438651	ACATCATCAAACGTCCACCG	58.561	50.000	0.00	0.00	44.03	4.94
748	2997	8.721019	CAAACATTCCATAGTTTGCCATATTT	57.279	30.769	5.27	0.00	45.28	1.40
992	3266	0.825010	CTGGATGGCCATGGCTAACC	60.825	60.000	34.08	34.08	44.91	2.85
1037	3312	0.393808	GGCCGCTTGGAGGATGTAAA	60.394	55.000	0.00	0.00	33.02	2.01
1040	3315	3.329889	TGGCCGCTTGGAGGATGT	61.330	61.111	0.00	0.00	33.02	3.06
1081	3358	1.202313	CGGGAAGTTGTTTTTCGCCAA	60.202	47.619	0.00	0.00	34.95	4.52
1233	3510	3.503365	CCGGATAACCCCACTGACTATA	58.497	50.000	0.00	0.00	0.00	1.31
1346	3628	3.198068	CGCATGCTCACTACCAGTAAAT	58.802	45.455	17.13	0.00	0.00	1.40
1367	3649	2.737376	GACTGGTCGAACGTGGCC	60.737	66.667	0.00	0.00	0.00	5.36
1430	3712	3.949842	TGCATCCCTAATCGATCAGAG	57.050	47.619	0.00	0.00	0.00	3.35
1478	3771	0.651031	CTCACAGAGACGCATGCATG	59.349	55.000	22.70	22.70	0.00	4.06
1486	3779	1.004277	GCAACGGACTCACAGAGACG	61.004	60.000	0.31	7.52	38.59	4.18
1531	3824	9.167311	AGATCTTGAAACCATGACTTATTACAC	57.833	33.333	0.00	0.00	0.00	2.90
1626	3924	6.321435	GGAATTTCTTGTTCCTATGGTTAGGG	59.679	42.308	0.00	0.00	44.60	3.53
1751	4050	5.348724	CCTACGATATTTGACAATCCATCGG	59.651	44.000	21.00	10.76	36.07	4.18
1934	4660	7.148340	GGAGTATTAGAAATCATACATGCTGCC	60.148	40.741	0.00	0.00	0.00	4.85
1938	4664	7.891183	ACGGAGTATTAGAAATCATACATGC	57.109	36.000	0.00	0.00	41.94	4.06
1984	4719	2.336554	GCGTCTGCATCAACACATTT	57.663	45.000	0.00	0.00	42.15	2.32
2053	4788	3.753272	TCCTTCTTTCTCTTTTGCCATCG	59.247	43.478	0.00	0.00	0.00	3.84
2056	4791	3.891366	CCTTCCTTCTTTCTCTTTTGCCA	59.109	43.478	0.00	0.00	0.00	4.92
2057	4792	4.145052	TCCTTCCTTCTTTCTCTTTTGCC	58.855	43.478	0.00	0.00	0.00	4.52
2071	4806	4.724293	CCTCCCTATTTTCTCTCCTTCCTT	59.276	45.833	0.00	0.00	0.00	3.36
2091	4826	3.917760	CCCGGCGACTCCATCCTC	61.918	72.222	9.30	0.00	34.01	3.71
2105	4840	0.958822	CAAAACCCTTTCCTGACCCG	59.041	55.000	0.00	0.00	0.00	5.28
2141	4876	2.052891	CACACGAAACGTACGAATCCA	58.947	47.619	24.41	0.00	38.32	3.41
2158	4893	2.298163	GGTTTAAGAGAGTCCGGACACA	59.702	50.000	35.00	11.42	0.00	3.72
2163	4898	1.481363	GGGAGGTTTAAGAGAGTCCGG	59.519	57.143	0.00	0.00	0.00	5.14
2173	4908	3.205733	AGACAAAAGTGGGGGAGGTTTAA	59.794	43.478	0.00	0.00	0.00	1.52
2184	4919	2.857748	GGCAAAACGAAGACAAAAGTGG	59.142	45.455	0.00	0.00	0.00	4.00
2196	4931	1.632046	GCGATTCTCCGGCAAAACGA	61.632	55.000	17.93	0.00	35.47	3.85
2227	4962	1.686455	TCCTTTATCGGCCCACGGA	60.686	57.895	0.00	0.00	44.45	4.69
2231	4966	1.223487	GCAGTCCTTTATCGGCCCA	59.777	57.895	0.00	0.00	0.00	5.36
2234	4969	4.515404	ACGCAGTCCTTTATCGGC	57.485	55.556	0.00	0.00	29.74	5.54
2258	4993	3.291101	CTTTCCGGACCGCGGAAGA	62.291	63.158	35.90	19.08	44.87	2.87
2278	5013	3.803886	GGTAACCATTCGGACCGC	58.196	61.111	9.66	0.00	35.59	5.68
2295	5030	2.182537	CGGACCCGTAAACCTCGG	59.817	66.667	0.00	0.00	46.49	4.63
2296	5031	2.507769	GCGGACCCGTAAACCTCG	60.508	66.667	10.37	0.00	42.09	4.63
2341	5076	5.981315	ACCGACGTCGATATTTTGTATGATT	59.019	36.000	37.65	0.41	43.02	2.57
2352	5087	2.356695	TGATTGTCACCGACGTCGATAT	59.643	45.455	37.65	20.22	43.02	1.63
2386	5121	7.639039	CATGCATTACGGCGGATATTATTTAT	58.361	34.615	13.24	0.00	36.28	1.40
2396	5131	1.100463	ATTGCATGCATTACGGCGGA	61.100	50.000	23.37	0.00	36.28	5.54
2397	5132	0.248990	AATTGCATGCATTACGGCGG	60.249	50.000	23.37	0.00	36.28	6.13
2398	5133	2.309693	CTAATTGCATGCATTACGGCG	58.690	47.619	23.37	4.80	36.28	6.46
2399	5134	2.053627	GCTAATTGCATGCATTACGGC	58.946	47.619	23.37	17.56	42.31	5.68

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.