Multiple sequence alignment - TraesCS4D01G290900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G290900 chr4D 100.000 3233 0 0 1 3233 461814678 461811446 0.000000e+00 5971.0
1 TraesCS4D01G290900 chr4D 87.081 209 23 3 1350 1558 140889511 140889307 1.940000e-57 233.0
2 TraesCS4D01G290900 chr4B 93.903 2165 77 24 1087 3233 577698635 577696508 0.000000e+00 3216.0
3 TraesCS4D01G290900 chr4B 80.568 1091 90 68 46 1083 577699688 577698667 0.000000e+00 728.0
4 TraesCS4D01G290900 chr4B 100.000 32 0 0 1 32 577699719 577699688 3.480000e-05 60.2
5 TraesCS4D01G290900 chr4A 90.878 1184 46 26 1117 2238 6922276 6923459 0.000000e+00 1531.0
6 TraesCS4D01G290900 chr4A 83.521 710 55 34 2428 3118 6923606 6924272 9.920000e-170 606.0
7 TraesCS4D01G290900 chr4A 79.443 287 33 15 806 1083 6921856 6922125 2.560000e-41 180.0
8 TraesCS4D01G290900 chr7D 79.518 332 44 11 1268 1599 49820517 49820824 7.020000e-52 215.0
9 TraesCS4D01G290900 chr2B 79.710 276 52 2 1329 1603 133938183 133938455 2.540000e-46 196.0
10 TraesCS4D01G290900 chr2B 88.710 62 4 3 1302 1363 788064463 788064405 4.470000e-09 73.1
11 TraesCS4D01G290900 chr2B 82.500 80 5 5 1302 1375 788070562 788070486 9.680000e-06 62.1
12 TraesCS4D01G290900 chr5A 85.841 113 13 3 1271 1383 18922940 18922831 2.040000e-22 117.0
13 TraesCS4D01G290900 chr5A 98.000 50 1 0 1785 1834 438847487 438847438 1.600000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G290900 chr4D 461811446 461814678 3232 True 5971.000000 5971 100.000000 1 3233 1 chr4D.!!$R2 3232
1 TraesCS4D01G290900 chr4B 577696508 577699719 3211 True 1334.733333 3216 91.490333 1 3233 3 chr4B.!!$R1 3232
2 TraesCS4D01G290900 chr4A 6921856 6924272 2416 False 772.333333 1531 84.614000 806 3118 3 chr4A.!!$F1 2312

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
546 565 0.108138 GAGAGCATGTTACGCAGGGT 60.108 55.0 0.0 0.0 42.62 4.34 F
628 671 0.321564 TTCACATTCACTCGGCCCAG 60.322 55.0 0.0 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 1756 0.036010 AGATGGTGTTGAGGAAGCCG 60.036 55.0 0.0 0.0 0.0 5.52 R
2392 2643 1.199615 TATCCAACTCATCCGTGCCA 58.800 50.0 0.0 0.0 0.0 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.268352 GCCAAAAACATGTACCGCTCA 59.732 47.619 0.00 0.00 0.00 4.26
33 34 2.920647 GCCAAAAACATGTACCGCTCAC 60.921 50.000 0.00 0.00 0.00 3.51
34 35 2.552315 CCAAAAACATGTACCGCTCACT 59.448 45.455 0.00 0.00 0.00 3.41
35 36 3.554524 CAAAAACATGTACCGCTCACTG 58.445 45.455 0.00 0.00 0.00 3.66
36 37 2.543777 AAACATGTACCGCTCACTGT 57.456 45.000 0.00 0.00 0.00 3.55
37 38 3.671008 AAACATGTACCGCTCACTGTA 57.329 42.857 0.00 0.00 0.00 2.74
38 39 2.649331 ACATGTACCGCTCACTGTAC 57.351 50.000 0.00 0.00 37.10 2.90
39 40 2.168496 ACATGTACCGCTCACTGTACT 58.832 47.619 0.00 0.00 37.38 2.73
40 41 2.094700 ACATGTACCGCTCACTGTACTG 60.095 50.000 0.00 0.00 37.38 2.74
41 42 1.612676 TGTACCGCTCACTGTACTGT 58.387 50.000 0.00 0.00 37.38 3.55
42 43 2.781923 TGTACCGCTCACTGTACTGTA 58.218 47.619 4.96 0.00 37.38 2.74
43 44 2.485426 TGTACCGCTCACTGTACTGTAC 59.515 50.000 10.98 10.98 37.38 2.90
44 45 1.612676 ACCGCTCACTGTACTGTACA 58.387 50.000 18.77 18.77 37.13 2.90
45 46 1.268899 ACCGCTCACTGTACTGTACAC 59.731 52.381 16.26 6.07 34.46 2.90
101 102 6.479660 CCGCTAATTAAACCTTGATTACCGTA 59.520 38.462 0.00 0.00 0.00 4.02
166 167 0.742990 CGCCACGCCCTCTTTATTCA 60.743 55.000 0.00 0.00 0.00 2.57
170 171 3.869065 CCACGCCCTCTTTATTCAGTAA 58.131 45.455 0.00 0.00 0.00 2.24
172 173 4.504858 CACGCCCTCTTTATTCAGTAAGT 58.495 43.478 0.00 0.00 0.00 2.24
173 174 5.394883 CCACGCCCTCTTTATTCAGTAAGTA 60.395 44.000 0.00 0.00 0.00 2.24
174 175 5.749109 CACGCCCTCTTTATTCAGTAAGTAG 59.251 44.000 0.00 0.00 0.00 2.57
175 176 5.421374 ACGCCCTCTTTATTCAGTAAGTAGT 59.579 40.000 0.00 0.00 0.00 2.73
176 177 6.604795 ACGCCCTCTTTATTCAGTAAGTAGTA 59.395 38.462 0.00 0.00 0.00 1.82
177 178 6.916932 CGCCCTCTTTATTCAGTAAGTAGTAC 59.083 42.308 0.00 0.00 0.00 2.73
178 179 6.916932 GCCCTCTTTATTCAGTAAGTAGTACG 59.083 42.308 0.00 0.00 37.81 3.67
179 180 7.424001 CCCTCTTTATTCAGTAAGTAGTACGG 58.576 42.308 0.00 0.00 37.81 4.02
180 181 7.067981 CCCTCTTTATTCAGTAAGTAGTACGGT 59.932 40.741 0.00 0.00 37.81 4.83
181 182 7.914346 CCTCTTTATTCAGTAAGTAGTACGGTG 59.086 40.741 0.00 0.00 37.81 4.94
182 183 7.253422 TCTTTATTCAGTAAGTAGTACGGTGC 58.747 38.462 0.00 0.00 37.81 5.01
183 184 6.513806 TTATTCAGTAAGTAGTACGGTGCA 57.486 37.500 0.00 0.00 37.81 4.57
184 185 4.430137 TTCAGTAAGTAGTACGGTGCAG 57.570 45.455 0.00 0.00 37.81 4.41
211 212 4.259570 GCGCGCTGTTGATCACTATATATG 60.260 45.833 26.67 0.00 0.00 1.78
213 214 5.410924 GCGCTGTTGATCACTATATATGGA 58.589 41.667 0.00 0.00 0.00 3.41
214 215 6.045318 GCGCTGTTGATCACTATATATGGAT 58.955 40.000 0.00 0.06 0.00 3.41
215 216 6.536582 GCGCTGTTGATCACTATATATGGATT 59.463 38.462 0.00 0.00 0.00 3.01
253 254 1.268896 CGCGGTTCCACGTACAGATAT 60.269 52.381 0.00 0.00 35.98 1.63
254 255 2.031769 CGCGGTTCCACGTACAGATATA 60.032 50.000 0.00 0.00 35.98 0.86
256 257 3.918591 GCGGTTCCACGTACAGATATATG 59.081 47.826 0.00 0.00 35.98 1.78
354 356 7.222000 TCCGTTTCTTTATTTGCTTGGTTAT 57.778 32.000 0.00 0.00 0.00 1.89
355 357 7.662897 TCCGTTTCTTTATTTGCTTGGTTATT 58.337 30.769 0.00 0.00 0.00 1.40
356 358 8.794553 TCCGTTTCTTTATTTGCTTGGTTATTA 58.205 29.630 0.00 0.00 0.00 0.98
357 359 9.581099 CCGTTTCTTTATTTGCTTGGTTATTAT 57.419 29.630 0.00 0.00 0.00 1.28
369 371 5.067805 GCTTGGTTATTATGGAAGGAAGGTG 59.932 44.000 0.00 0.00 0.00 4.00
370 372 5.789574 TGGTTATTATGGAAGGAAGGTGT 57.210 39.130 0.00 0.00 0.00 4.16
375 377 5.897377 ATTATGGAAGGAAGGTGTTTTCG 57.103 39.130 0.00 0.00 0.00 3.46
376 378 1.975660 TGGAAGGAAGGTGTTTTCGG 58.024 50.000 0.00 0.00 0.00 4.30
377 379 1.213430 TGGAAGGAAGGTGTTTTCGGT 59.787 47.619 0.00 0.00 0.00 4.69
378 380 1.878088 GGAAGGAAGGTGTTTTCGGTC 59.122 52.381 0.00 0.00 0.00 4.79
379 381 1.529865 GAAGGAAGGTGTTTTCGGTCG 59.470 52.381 0.00 0.00 0.00 4.79
405 407 3.275338 GAGCACGCATGGCTAGGC 61.275 66.667 9.85 9.85 42.78 3.93
442 460 2.512745 ATGCCGTTTCGCGCCATA 60.513 55.556 0.00 0.00 39.71 2.74
449 467 0.913876 GTTTCGCGCCATATGTTTGC 59.086 50.000 0.00 1.70 0.00 3.68
450 468 0.808125 TTTCGCGCCATATGTTTGCT 59.192 45.000 0.00 0.00 0.00 3.91
451 469 0.808125 TTCGCGCCATATGTTTGCTT 59.192 45.000 0.00 0.00 0.00 3.91
452 470 0.376852 TCGCGCCATATGTTTGCTTC 59.623 50.000 0.00 0.00 0.00 3.86
453 471 0.378257 CGCGCCATATGTTTGCTTCT 59.622 50.000 0.00 0.00 0.00 2.85
454 472 1.202177 CGCGCCATATGTTTGCTTCTT 60.202 47.619 0.00 0.00 0.00 2.52
455 473 2.731968 CGCGCCATATGTTTGCTTCTTT 60.732 45.455 0.00 0.00 0.00 2.52
456 474 2.599973 GCGCCATATGTTTGCTTCTTTG 59.400 45.455 0.00 0.00 0.00 2.77
459 477 4.685628 CGCCATATGTTTGCTTCTTTGTTT 59.314 37.500 1.24 0.00 0.00 2.83
478 497 0.465460 TGTTCAGAAGCCCGCTTTGT 60.465 50.000 2.98 0.00 36.26 2.83
502 521 2.476821 GAGCACTGCACAAATTTTGCT 58.523 42.857 11.57 11.57 42.89 3.91
509 528 1.421382 CACAAATTTTGCTCCAGCCG 58.579 50.000 9.04 0.00 41.18 5.52
510 529 1.039856 ACAAATTTTGCTCCAGCCGT 58.960 45.000 9.04 0.00 41.18 5.68
512 531 0.319813 AAATTTTGCTCCAGCCGTGC 60.320 50.000 0.00 0.00 41.18 5.34
514 533 4.617520 TTTGCTCCAGCCGTGCGA 62.618 61.111 0.00 0.00 41.18 5.10
515 534 3.899981 TTTGCTCCAGCCGTGCGAT 62.900 57.895 0.00 0.00 41.18 4.58
516 535 3.899981 TTGCTCCAGCCGTGCGATT 62.900 57.895 0.00 0.00 41.18 3.34
517 536 3.869272 GCTCCAGCCGTGCGATTG 61.869 66.667 0.00 0.00 34.31 2.67
518 537 3.197790 CTCCAGCCGTGCGATTGG 61.198 66.667 7.63 7.63 0.00 3.16
531 550 3.665173 GCGATTGGCAACTAAAGAGAG 57.335 47.619 0.00 0.00 42.87 3.20
532 551 2.223135 GCGATTGGCAACTAAAGAGAGC 60.223 50.000 0.00 0.00 42.87 4.09
533 552 3.002791 CGATTGGCAACTAAAGAGAGCA 58.997 45.455 0.00 0.00 37.61 4.26
534 553 3.624861 CGATTGGCAACTAAAGAGAGCAT 59.375 43.478 0.00 0.00 37.61 3.79
535 554 4.495349 CGATTGGCAACTAAAGAGAGCATG 60.495 45.833 0.00 0.00 37.61 4.06
536 555 3.423539 TGGCAACTAAAGAGAGCATGT 57.576 42.857 0.00 0.00 37.61 3.21
539 558 4.695455 TGGCAACTAAAGAGAGCATGTTAC 59.305 41.667 0.00 0.00 37.61 2.50
543 562 4.177026 ACTAAAGAGAGCATGTTACGCAG 58.823 43.478 0.00 0.00 0.00 5.18
545 564 0.176680 AGAGAGCATGTTACGCAGGG 59.823 55.000 0.00 0.00 0.00 4.45
546 565 0.108138 GAGAGCATGTTACGCAGGGT 60.108 55.000 0.00 0.00 42.62 4.34
547 566 1.136305 GAGAGCATGTTACGCAGGGTA 59.864 52.381 0.00 0.00 39.86 3.69
548 567 1.134788 AGAGCATGTTACGCAGGGTAC 60.135 52.381 0.00 0.00 39.86 3.34
549 568 0.459585 AGCATGTTACGCAGGGTACG 60.460 55.000 0.00 0.00 37.87 3.67
550 569 1.426041 GCATGTTACGCAGGGTACGG 61.426 60.000 0.00 0.00 34.00 4.02
552 571 2.510012 GTTACGCAGGGTACGGGC 60.510 66.667 0.00 0.00 34.00 6.13
553 572 3.773404 TTACGCAGGGTACGGGCC 61.773 66.667 0.00 0.00 34.00 5.80
569 588 4.630785 CCGACGCGGCTCGATCAT 62.631 66.667 19.23 0.00 41.17 2.45
570 589 3.390017 CGACGCGGCTCGATCATG 61.390 66.667 11.76 0.00 41.67 3.07
572 591 2.013483 GACGCGGCTCGATCATGAG 61.013 63.158 12.47 0.00 41.67 2.90
611 654 2.892640 GCCAAAAGGGGCGGATTC 59.107 61.111 0.00 0.00 45.40 2.52
617 660 1.474330 AAAGGGGCGGATTCACATTC 58.526 50.000 0.00 0.00 0.00 2.67
621 664 1.017387 GGGCGGATTCACATTCACTC 58.983 55.000 0.00 0.00 0.00 3.51
622 665 0.652592 GGCGGATTCACATTCACTCG 59.347 55.000 0.00 0.00 0.00 4.18
623 666 0.652592 GCGGATTCACATTCACTCGG 59.347 55.000 0.00 0.00 0.00 4.63
624 667 0.652592 CGGATTCACATTCACTCGGC 59.347 55.000 0.00 0.00 0.00 5.54
625 668 1.017387 GGATTCACATTCACTCGGCC 58.983 55.000 0.00 0.00 0.00 6.13
626 669 1.017387 GATTCACATTCACTCGGCCC 58.983 55.000 0.00 0.00 0.00 5.80
627 670 0.327924 ATTCACATTCACTCGGCCCA 59.672 50.000 0.00 0.00 0.00 5.36
628 671 0.321564 TTCACATTCACTCGGCCCAG 60.322 55.000 0.00 0.00 0.00 4.45
629 672 1.191489 TCACATTCACTCGGCCCAGA 61.191 55.000 3.62 0.00 0.00 3.86
630 673 1.021390 CACATTCACTCGGCCCAGAC 61.021 60.000 3.62 0.00 0.00 3.51
631 674 1.450312 CATTCACTCGGCCCAGACC 60.450 63.158 3.62 0.00 0.00 3.85
632 675 1.918293 ATTCACTCGGCCCAGACCA 60.918 57.895 3.62 0.00 0.00 4.02
633 676 1.903877 ATTCACTCGGCCCAGACCAG 61.904 60.000 3.62 0.00 0.00 4.00
634 677 3.314331 CACTCGGCCCAGACCAGT 61.314 66.667 3.62 0.00 0.00 4.00
635 678 1.982395 CACTCGGCCCAGACCAGTA 60.982 63.158 3.62 0.00 0.00 2.74
636 679 1.982938 ACTCGGCCCAGACCAGTAC 60.983 63.158 3.62 0.00 0.00 2.73
637 680 1.682684 CTCGGCCCAGACCAGTACT 60.683 63.158 0.00 0.00 0.00 2.73
638 681 1.949847 CTCGGCCCAGACCAGTACTG 61.950 65.000 16.34 16.34 35.43 2.74
658 701 2.367567 TGGTGTCTGTCTGGTAACCTTC 59.632 50.000 0.00 0.00 0.00 3.46
662 705 3.071023 TGTCTGTCTGGTAACCTTCTTGG 59.929 47.826 0.00 0.00 42.93 3.61
670 713 6.003950 TCTGGTAACCTTCTTGGATGAAAAG 58.996 40.000 0.00 0.00 39.71 2.27
671 714 4.522789 TGGTAACCTTCTTGGATGAAAAGC 59.477 41.667 0.00 0.00 39.71 3.51
672 715 3.923017 AACCTTCTTGGATGAAAAGCG 57.077 42.857 0.00 0.00 39.71 4.68
673 716 2.863809 ACCTTCTTGGATGAAAAGCGT 58.136 42.857 0.00 0.00 39.71 5.07
674 717 4.015872 ACCTTCTTGGATGAAAAGCGTA 57.984 40.909 0.00 0.00 39.71 4.42
675 718 4.589908 ACCTTCTTGGATGAAAAGCGTAT 58.410 39.130 0.00 0.00 39.71 3.06
676 719 4.396166 ACCTTCTTGGATGAAAAGCGTATG 59.604 41.667 0.00 0.00 39.71 2.39
703 747 2.325082 GCGTGGTTGGCTACAGTGG 61.325 63.158 0.80 0.00 0.00 4.00
705 749 0.949105 CGTGGTTGGCTACAGTGGTC 60.949 60.000 0.80 0.00 0.00 4.02
718 762 2.588596 TGGTCGCACACAGCACAG 60.589 61.111 0.00 0.00 46.13 3.66
778 822 0.533032 GACAGGTAGACAGAGGGTGC 59.467 60.000 0.00 0.00 0.00 5.01
827 876 1.597027 ACGCCCGAAACCAACTGAG 60.597 57.895 0.00 0.00 0.00 3.35
828 877 1.597027 CGCCCGAAACCAACTGAGT 60.597 57.895 0.00 0.00 0.00 3.41
832 881 1.070134 CCCGAAACCAACTGAGTCTGA 59.930 52.381 3.76 0.00 0.00 3.27
834 883 2.544267 CCGAAACCAACTGAGTCTGAAC 59.456 50.000 3.76 0.00 0.00 3.18
835 884 2.544267 CGAAACCAACTGAGTCTGAACC 59.456 50.000 3.76 0.00 0.00 3.62
836 885 2.640316 AACCAACTGAGTCTGAACCC 57.360 50.000 3.76 0.00 0.00 4.11
891 940 2.663196 CGTCGCCCCTTCTTCCTT 59.337 61.111 0.00 0.00 0.00 3.36
894 943 1.229529 TCGCCCCTTCTTCCTTCCT 60.230 57.895 0.00 0.00 0.00 3.36
895 944 1.222113 CGCCCCTTCTTCCTTCCTC 59.778 63.158 0.00 0.00 0.00 3.71
896 945 1.610327 GCCCCTTCTTCCTTCCTCC 59.390 63.158 0.00 0.00 0.00 4.30
897 946 1.927569 GCCCCTTCTTCCTTCCTCCC 61.928 65.000 0.00 0.00 0.00 4.30
898 947 1.282653 CCCCTTCTTCCTTCCTCCCC 61.283 65.000 0.00 0.00 0.00 4.81
899 948 1.282653 CCCTTCTTCCTTCCTCCCCC 61.283 65.000 0.00 0.00 0.00 5.40
900 949 1.627297 CCTTCTTCCTTCCTCCCCCG 61.627 65.000 0.00 0.00 0.00 5.73
901 950 2.258748 CTTCTTCCTTCCTCCCCCGC 62.259 65.000 0.00 0.00 0.00 6.13
902 951 3.798511 CTTCCTTCCTCCCCCGCC 61.799 72.222 0.00 0.00 0.00 6.13
903 952 4.667935 TTCCTTCCTCCCCCGCCA 62.668 66.667 0.00 0.00 0.00 5.69
935 984 2.011122 TATCTTCCCACCGATCCCTC 57.989 55.000 0.00 0.00 0.00 4.30
976 1034 3.181428 CCTCCAACCTTTCTCCTCCTTTT 60.181 47.826 0.00 0.00 0.00 2.27
977 1035 4.075682 CTCCAACCTTTCTCCTCCTTTTC 58.924 47.826 0.00 0.00 0.00 2.29
978 1036 3.461831 TCCAACCTTTCTCCTCCTTTTCA 59.538 43.478 0.00 0.00 0.00 2.69
981 1039 2.783510 ACCTTTCTCCTCCTTTTCACCA 59.216 45.455 0.00 0.00 0.00 4.17
984 1042 0.685097 TCTCCTCCTTTTCACCACCG 59.315 55.000 0.00 0.00 0.00 4.94
1011 1069 2.032681 GCCCCACGAGCTCAGTTT 59.967 61.111 15.40 0.00 0.00 2.66
1015 1073 1.289066 CCACGAGCTCAGTTTCGGA 59.711 57.895 15.40 0.00 40.93 4.55
1021 1082 1.000955 GAGCTCAGTTTCGGAGAACCA 59.999 52.381 9.40 0.00 45.90 3.67
1037 1098 1.919240 ACCATCTCACTGTACACGGA 58.081 50.000 0.00 0.00 0.00 4.69
1155 1333 4.699522 GCCGACCAGCCGTCCTTT 62.700 66.667 0.00 0.00 38.36 3.11
1392 1585 4.856607 GGCGGCTTCTCCTCGTCG 62.857 72.222 0.00 0.00 0.00 5.12
1650 1852 2.576317 GAGTACGCGTGCTCGTCC 60.576 66.667 35.36 18.21 43.15 4.79
1671 1873 3.190849 TCGTCCTACTCGCGGTCG 61.191 66.667 6.13 3.35 35.01 4.79
1843 2045 2.436292 ACGAGGAGGACGACGAGG 60.436 66.667 0.00 0.00 34.70 4.63
1844 2046 2.125229 CGAGGAGGACGACGAGGA 60.125 66.667 0.00 0.00 0.00 3.71
1845 2047 2.462782 CGAGGAGGACGACGAGGAC 61.463 68.421 0.00 0.00 0.00 3.85
2126 2369 2.673833 ACGTGCTCTCTCTTTTAACCG 58.326 47.619 0.00 0.00 0.00 4.44
2181 2424 2.166664 GGGTGTGGAGTGTACTCAGATC 59.833 54.545 13.51 0.00 44.60 2.75
2182 2425 2.826128 GGTGTGGAGTGTACTCAGATCA 59.174 50.000 13.51 0.27 44.60 2.92
2183 2426 3.119316 GGTGTGGAGTGTACTCAGATCAG 60.119 52.174 13.51 0.00 44.60 2.90
2184 2427 3.759086 GTGTGGAGTGTACTCAGATCAGA 59.241 47.826 13.51 0.00 44.60 3.27
2260 2511 1.271656 CTCCTTTGCCCTCTGCTTTTG 59.728 52.381 0.00 0.00 42.00 2.44
2261 2512 1.133513 TCCTTTGCCCTCTGCTTTTGA 60.134 47.619 0.00 0.00 42.00 2.69
2266 2517 2.504367 TGCCCTCTGCTTTTGAACTAC 58.496 47.619 0.00 0.00 42.00 2.73
2271 2522 5.552178 CCCTCTGCTTTTGAACTACTACTT 58.448 41.667 0.00 0.00 0.00 2.24
2293 2544 3.997021 TCAGAAAGTCTTGAATTCCTCGC 59.003 43.478 2.27 0.00 0.00 5.03
2348 2599 3.489416 GGAAGCAAATGTTTTGGACGAAC 59.511 43.478 0.00 0.00 0.00 3.95
2359 2610 0.036765 TGGACGAACCAAATCGGAGG 60.037 55.000 3.90 0.00 46.75 4.30
2360 2611 0.036671 GGACGAACCAAATCGGAGGT 60.037 55.000 1.59 0.00 46.82 3.85
2362 2613 2.537401 GACGAACCAAATCGGAGGTAG 58.463 52.381 1.59 0.00 46.82 3.18
2500 2751 1.611519 GTACGATCTGCTAGGAGGCT 58.388 55.000 11.76 0.00 0.00 4.58
2734 2996 5.644977 GGAATCATTCCTCTTCCGTTTTT 57.355 39.130 9.43 0.00 46.57 1.94
2802 3064 0.739112 GTCAGCTCCAGCACACTAGC 60.739 60.000 0.48 0.00 45.16 3.42
2804 3066 1.979155 AGCTCCAGCACACTAGCGA 60.979 57.895 0.48 0.00 45.16 4.93
2805 3067 1.518133 GCTCCAGCACACTAGCGAG 60.518 63.158 0.00 0.00 41.59 5.03
2806 3068 1.886585 CTCCAGCACACTAGCGAGT 59.113 57.895 0.00 0.00 40.15 4.18
2819 3081 6.509317 CACTAGCGAGTGTACTACTACTAC 57.491 45.833 17.87 0.00 46.88 2.73
2991 3256 8.425491 CGTACGGTCTAAATCTTGCTAATTATG 58.575 37.037 7.57 0.00 0.00 1.90
2992 3257 7.730364 ACGGTCTAAATCTTGCTAATTATGG 57.270 36.000 0.00 0.00 0.00 2.74
2993 3258 6.204882 ACGGTCTAAATCTTGCTAATTATGGC 59.795 38.462 0.00 0.00 0.00 4.40
2994 3259 6.348540 CGGTCTAAATCTTGCTAATTATGGCC 60.349 42.308 0.00 0.00 30.79 5.36
2995 3260 6.348540 GGTCTAAATCTTGCTAATTATGGCCG 60.349 42.308 0.00 0.00 30.79 6.13
3070 3345 2.083774 CTAGGAGCTAGGCTGATCGAG 58.916 57.143 0.00 0.00 39.88 4.04
3071 3346 0.539438 AGGAGCTAGGCTGATCGAGG 60.539 60.000 0.00 0.00 39.88 4.63
3093 3372 3.805422 GCCGGTTATCAAACATGTCGATA 59.195 43.478 1.90 11.88 37.34 2.92
3162 3444 4.097892 GGATGTTGGTCAATTATTTCGGCT 59.902 41.667 0.00 0.00 0.00 5.52
3185 3467 4.192317 ACAGGAAAATCGATCAGGTTAGC 58.808 43.478 0.00 0.00 0.00 3.09
3210 3492 2.425124 CGTGGTTCACTTTGCGCG 60.425 61.111 0.00 0.00 31.34 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.584835 TACCGGGTGTACAGTACAGT 57.415 50.000 14.03 10.55 39.77 3.55
41 42 1.985662 CCCTGCTGTACCGGGTGTA 60.986 63.158 10.66 0.00 33.16 2.90
42 43 3.319198 CCCTGCTGTACCGGGTGT 61.319 66.667 10.66 0.00 33.16 4.16
43 44 4.778143 GCCCTGCTGTACCGGGTG 62.778 72.222 10.66 0.00 40.22 4.61
101 102 0.550914 TTGATTAATCCGGCCAGCCT 59.449 50.000 12.90 0.00 0.00 4.58
104 105 2.222027 GTCCTTGATTAATCCGGCCAG 58.778 52.381 12.90 0.00 0.00 4.85
105 106 1.474320 CGTCCTTGATTAATCCGGCCA 60.474 52.381 12.90 0.00 0.00 5.36
106 107 1.226746 CGTCCTTGATTAATCCGGCC 58.773 55.000 12.90 0.00 0.00 6.13
108 109 1.414919 TCCCGTCCTTGATTAATCCGG 59.585 52.381 18.00 18.00 0.00 5.14
112 113 4.101119 ACGAGATTCCCGTCCTTGATTAAT 59.899 41.667 0.00 0.00 34.97 1.40
166 167 1.475682 GCCTGCACCGTACTACTTACT 59.524 52.381 0.00 0.00 0.00 2.24
170 171 1.890894 CTGCCTGCACCGTACTACT 59.109 57.895 0.00 0.00 0.00 2.57
172 173 2.577059 GCTGCCTGCACCGTACTA 59.423 61.111 0.00 0.00 42.31 1.82
173 174 4.742201 CGCTGCCTGCACCGTACT 62.742 66.667 0.00 0.00 43.06 2.73
211 212 5.343325 GCGCTTTGCAGCTTAATAATAATCC 59.657 40.000 0.00 0.00 44.85 3.01
213 214 4.911610 CGCGCTTTGCAGCTTAATAATAAT 59.088 37.500 5.56 0.00 46.97 1.28
214 215 4.278858 CGCGCTTTGCAGCTTAATAATAA 58.721 39.130 5.56 0.00 46.97 1.40
215 216 3.303725 CCGCGCTTTGCAGCTTAATAATA 60.304 43.478 5.56 0.00 46.97 0.98
331 333 7.883229 AATAACCAAGCAAATAAAGAAACGG 57.117 32.000 0.00 0.00 0.00 4.44
339 341 8.830915 TCCTTCCATAATAACCAAGCAAATAA 57.169 30.769 0.00 0.00 0.00 1.40
354 356 4.076394 CCGAAAACACCTTCCTTCCATAA 58.924 43.478 0.00 0.00 0.00 1.90
355 357 3.073356 ACCGAAAACACCTTCCTTCCATA 59.927 43.478 0.00 0.00 0.00 2.74
356 358 2.158519 ACCGAAAACACCTTCCTTCCAT 60.159 45.455 0.00 0.00 0.00 3.41
357 359 1.213430 ACCGAAAACACCTTCCTTCCA 59.787 47.619 0.00 0.00 0.00 3.53
358 360 1.878088 GACCGAAAACACCTTCCTTCC 59.122 52.381 0.00 0.00 0.00 3.46
359 361 1.529865 CGACCGAAAACACCTTCCTTC 59.470 52.381 0.00 0.00 0.00 3.46
360 362 1.589803 CGACCGAAAACACCTTCCTT 58.410 50.000 0.00 0.00 0.00 3.36
398 400 1.005630 CACATCTAGCGGCCTAGCC 60.006 63.158 0.00 0.00 46.75 3.93
428 446 0.098025 AAACATATGGCGCGAAACGG 59.902 50.000 12.10 0.00 43.93 4.44
442 460 6.397272 TCTGAACAAACAAAGAAGCAAACAT 58.603 32.000 0.00 0.00 0.00 2.71
449 467 4.363138 GGGCTTCTGAACAAACAAAGAAG 58.637 43.478 6.86 6.86 45.48 2.85
450 468 3.181491 CGGGCTTCTGAACAAACAAAGAA 60.181 43.478 0.00 0.00 0.00 2.52
451 469 2.357637 CGGGCTTCTGAACAAACAAAGA 59.642 45.455 0.00 0.00 0.00 2.52
452 470 2.731217 CGGGCTTCTGAACAAACAAAG 58.269 47.619 0.00 0.00 0.00 2.77
453 471 1.202359 GCGGGCTTCTGAACAAACAAA 60.202 47.619 0.00 0.00 0.00 2.83
454 472 0.383949 GCGGGCTTCTGAACAAACAA 59.616 50.000 0.00 0.00 0.00 2.83
455 473 0.465460 AGCGGGCTTCTGAACAAACA 60.465 50.000 0.00 0.00 0.00 2.83
456 474 0.668535 AAGCGGGCTTCTGAACAAAC 59.331 50.000 0.00 0.00 0.00 2.93
459 477 0.465460 ACAAAGCGGGCTTCTGAACA 60.465 50.000 6.35 0.00 34.84 3.18
478 497 4.619973 CAAAATTTGTGCAGTGCTCCTAA 58.380 39.130 17.60 10.23 0.00 2.69
512 531 3.002791 TGCTCTCTTTAGTTGCCAATCG 58.997 45.455 0.00 0.00 0.00 3.34
514 533 4.338879 ACATGCTCTCTTTAGTTGCCAAT 58.661 39.130 0.00 0.00 0.00 3.16
515 534 3.754965 ACATGCTCTCTTTAGTTGCCAA 58.245 40.909 0.00 0.00 0.00 4.52
516 535 3.423539 ACATGCTCTCTTTAGTTGCCA 57.576 42.857 0.00 0.00 0.00 4.92
517 536 4.201724 CGTAACATGCTCTCTTTAGTTGCC 60.202 45.833 0.00 0.00 0.00 4.52
518 537 4.725169 GCGTAACATGCTCTCTTTAGTTGC 60.725 45.833 0.00 0.00 0.00 4.17
519 538 4.388773 TGCGTAACATGCTCTCTTTAGTTG 59.611 41.667 0.00 0.00 0.00 3.16
522 541 3.553511 CCTGCGTAACATGCTCTCTTTAG 59.446 47.826 0.00 0.00 0.00 1.85
523 542 3.521560 CCTGCGTAACATGCTCTCTTTA 58.478 45.455 0.00 0.00 0.00 1.85
527 546 0.108138 ACCCTGCGTAACATGCTCTC 60.108 55.000 0.00 0.00 0.00 3.20
528 547 1.134788 GTACCCTGCGTAACATGCTCT 60.135 52.381 0.00 0.00 0.00 4.09
529 548 1.287425 GTACCCTGCGTAACATGCTC 58.713 55.000 0.00 0.00 0.00 4.26
530 549 0.459585 CGTACCCTGCGTAACATGCT 60.460 55.000 0.00 0.00 0.00 3.79
531 550 1.426041 CCGTACCCTGCGTAACATGC 61.426 60.000 0.00 0.00 0.00 4.06
532 551 0.808453 CCCGTACCCTGCGTAACATG 60.808 60.000 0.00 0.00 0.00 3.21
533 552 1.518774 CCCGTACCCTGCGTAACAT 59.481 57.895 0.00 0.00 0.00 2.71
534 553 2.972267 CCCGTACCCTGCGTAACA 59.028 61.111 0.00 0.00 0.00 2.41
535 554 2.510012 GCCCGTACCCTGCGTAAC 60.510 66.667 0.00 0.00 0.00 2.50
536 555 3.773404 GGCCCGTACCCTGCGTAA 61.773 66.667 0.00 0.00 0.00 3.18
553 572 3.390017 CATGATCGAGCCGCGTCG 61.390 66.667 12.39 12.39 41.80 5.12
554 573 2.013483 CTCATGATCGAGCCGCGTC 61.013 63.158 4.92 0.00 41.80 5.19
555 574 2.026734 CTCATGATCGAGCCGCGT 59.973 61.111 4.92 0.00 41.80 6.01
561 580 6.259608 AGGTTTTCATTTAGCTCATGATCGAG 59.740 38.462 8.89 0.00 36.02 4.04
563 582 6.197276 CAGGTTTTCATTTAGCTCATGATCG 58.803 40.000 8.89 0.00 30.63 3.69
564 583 6.460676 CCCAGGTTTTCATTTAGCTCATGATC 60.461 42.308 8.89 0.00 30.63 2.92
565 584 5.361857 CCCAGGTTTTCATTTAGCTCATGAT 59.638 40.000 8.89 0.00 30.63 2.45
566 585 4.706476 CCCAGGTTTTCATTTAGCTCATGA 59.294 41.667 4.69 4.69 0.00 3.07
567 586 4.706476 TCCCAGGTTTTCATTTAGCTCATG 59.294 41.667 0.00 0.00 0.00 3.07
568 587 4.706962 GTCCCAGGTTTTCATTTAGCTCAT 59.293 41.667 0.00 0.00 0.00 2.90
569 588 4.079253 GTCCCAGGTTTTCATTTAGCTCA 58.921 43.478 0.00 0.00 0.00 4.26
570 589 3.127030 CGTCCCAGGTTTTCATTTAGCTC 59.873 47.826 0.00 0.00 0.00 4.09
572 591 2.817844 ACGTCCCAGGTTTTCATTTAGC 59.182 45.455 0.00 0.00 0.00 3.09
573 592 3.365969 GCACGTCCCAGGTTTTCATTTAG 60.366 47.826 0.00 0.00 0.00 1.85
574 593 2.554893 GCACGTCCCAGGTTTTCATTTA 59.445 45.455 0.00 0.00 0.00 1.40
575 594 1.339929 GCACGTCCCAGGTTTTCATTT 59.660 47.619 0.00 0.00 0.00 2.32
577 596 0.893727 GGCACGTCCCAGGTTTTCAT 60.894 55.000 0.00 0.00 0.00 2.57
578 597 1.527380 GGCACGTCCCAGGTTTTCA 60.527 57.895 0.00 0.00 0.00 2.69
580 599 0.684805 TTTGGCACGTCCCAGGTTTT 60.685 50.000 0.00 0.00 36.00 2.43
581 600 0.684805 TTTTGGCACGTCCCAGGTTT 60.685 50.000 0.00 0.00 36.00 3.27
611 654 1.021390 GTCTGGGCCGAGTGAATGTG 61.021 60.000 15.09 0.00 0.00 3.21
617 660 1.982395 TACTGGTCTGGGCCGAGTG 60.982 63.158 15.09 6.49 0.00 3.51
621 664 2.579201 CAGTACTGGTCTGGGCCG 59.421 66.667 15.49 0.00 0.00 6.13
622 665 2.990479 CCAGTACTGGTCTGGGCC 59.010 66.667 30.57 0.00 46.03 5.80
631 674 1.964223 ACCAGACAGACACCAGTACTG 59.036 52.381 16.34 16.34 37.62 2.74
632 675 2.383442 ACCAGACAGACACCAGTACT 57.617 50.000 0.00 0.00 0.00 2.73
633 676 3.305881 GGTTACCAGACAGACACCAGTAC 60.306 52.174 0.00 0.00 0.00 2.73
634 677 2.895404 GGTTACCAGACAGACACCAGTA 59.105 50.000 0.00 0.00 0.00 2.74
635 678 1.692519 GGTTACCAGACAGACACCAGT 59.307 52.381 0.00 0.00 0.00 4.00
636 679 1.971357 AGGTTACCAGACAGACACCAG 59.029 52.381 3.51 0.00 0.00 4.00
637 680 2.097110 AGGTTACCAGACAGACACCA 57.903 50.000 3.51 0.00 0.00 4.17
638 681 2.633481 AGAAGGTTACCAGACAGACACC 59.367 50.000 3.51 0.00 0.00 4.16
639 682 4.058817 CAAGAAGGTTACCAGACAGACAC 58.941 47.826 3.51 0.00 0.00 3.67
640 683 3.071023 CCAAGAAGGTTACCAGACAGACA 59.929 47.826 3.51 0.00 0.00 3.41
641 684 3.323979 TCCAAGAAGGTTACCAGACAGAC 59.676 47.826 3.51 0.00 39.02 3.51
642 685 3.583228 TCCAAGAAGGTTACCAGACAGA 58.417 45.455 3.51 0.00 39.02 3.41
643 686 4.020218 TCATCCAAGAAGGTTACCAGACAG 60.020 45.833 3.51 0.00 39.02 3.51
658 701 7.080099 CCATAATCATACGCTTTTCATCCAAG 58.920 38.462 0.00 0.00 0.00 3.61
662 705 5.853282 GCACCATAATCATACGCTTTTCATC 59.147 40.000 0.00 0.00 0.00 2.92
670 713 1.194547 CCACGCACCATAATCATACGC 59.805 52.381 0.00 0.00 0.00 4.42
671 714 2.479837 ACCACGCACCATAATCATACG 58.520 47.619 0.00 0.00 0.00 3.06
672 715 3.003275 CCAACCACGCACCATAATCATAC 59.997 47.826 0.00 0.00 0.00 2.39
673 716 3.210227 CCAACCACGCACCATAATCATA 58.790 45.455 0.00 0.00 0.00 2.15
674 717 2.023673 CCAACCACGCACCATAATCAT 58.976 47.619 0.00 0.00 0.00 2.45
675 718 1.458398 CCAACCACGCACCATAATCA 58.542 50.000 0.00 0.00 0.00 2.57
676 719 0.100503 GCCAACCACGCACCATAATC 59.899 55.000 0.00 0.00 0.00 1.75
703 747 0.878523 TTACCTGTGCTGTGTGCGAC 60.879 55.000 0.00 0.00 46.63 5.19
705 749 1.569493 GTTACCTGTGCTGTGTGCG 59.431 57.895 0.00 0.00 46.63 5.34
743 787 2.548280 CCTGTCTCTCAGCCATGCTATG 60.548 54.545 0.00 0.00 42.38 2.23
751 795 1.748493 CTGTCTACCTGTCTCTCAGCC 59.252 57.143 0.00 0.00 42.38 4.85
815 859 2.879026 GGGTTCAGACTCAGTTGGTTTC 59.121 50.000 0.00 0.00 0.00 2.78
827 876 1.003233 GAGGCCACTGGGTTCAGAC 60.003 63.158 5.01 0.00 43.49 3.51
828 877 2.224159 GGAGGCCACTGGGTTCAGA 61.224 63.158 5.01 0.00 43.49 3.27
832 881 2.936032 GGAGGAGGCCACTGGGTT 60.936 66.667 5.01 0.00 36.17 4.11
874 923 1.448013 GAAGGAAGAAGGGGCGACG 60.448 63.158 0.00 0.00 0.00 5.12
875 924 1.078356 GGAAGGAAGAAGGGGCGAC 60.078 63.158 0.00 0.00 0.00 5.19
878 927 1.610327 GGAGGAAGGAAGAAGGGGC 59.390 63.158 0.00 0.00 0.00 5.80
904 953 1.448013 GAAGATATAGGCGGCCGGC 60.448 63.158 41.76 41.76 42.51 6.13
905 954 1.218316 GGAAGATATAGGCGGCCGG 59.782 63.158 29.38 8.95 0.00 6.13
906 955 1.218316 GGGAAGATATAGGCGGCCG 59.782 63.158 24.05 24.05 0.00 6.13
935 984 0.038310 GAAAGAAGGGTGAGGGGGTG 59.962 60.000 0.00 0.00 0.00 4.61
976 1034 3.948719 GAAGGGTGGCGGTGGTGA 61.949 66.667 0.00 0.00 0.00 4.02
997 1055 0.734253 CTCCGAAACTGAGCTCGTGG 60.734 60.000 9.64 7.98 33.17 4.94
1008 1066 2.996621 CAGTGAGATGGTTCTCCGAAAC 59.003 50.000 0.83 0.00 46.67 2.78
1011 1069 1.924731 ACAGTGAGATGGTTCTCCGA 58.075 50.000 0.00 0.00 46.67 4.55
1015 1073 2.231478 CCGTGTACAGTGAGATGGTTCT 59.769 50.000 0.00 0.00 33.88 3.01
1021 1082 2.492484 GGAACTCCGTGTACAGTGAGAT 59.508 50.000 22.20 13.88 0.00 2.75
1037 1098 4.443266 GCGCGAGGCAGAGGAACT 62.443 66.667 12.10 0.00 42.46 3.01
1065 1126 2.299013 ACGGACAATGCTCTGTTCTACA 59.701 45.455 0.00 0.00 0.00 2.74
1066 1127 2.668457 CACGGACAATGCTCTGTTCTAC 59.332 50.000 0.00 0.00 0.00 2.59
1075 1136 0.327924 TCCATTCCACGGACAATGCT 59.672 50.000 0.00 0.00 0.00 3.79
1083 1144 2.202932 CGCCTCTCCATTCCACGG 60.203 66.667 0.00 0.00 0.00 4.94
1084 1145 2.892425 GCGCCTCTCCATTCCACG 60.892 66.667 0.00 0.00 0.00 4.94
1155 1333 3.719144 TCGAGCAGCGACGACGAA 61.719 61.111 12.29 0.00 45.59 3.85
1563 1756 0.036010 AGATGGTGTTGAGGAAGCCG 60.036 55.000 0.00 0.00 0.00 5.52
1647 1849 2.402787 GAGTAGGACGACGCGGAC 59.597 66.667 12.47 2.84 0.00 4.79
2013 2221 2.667199 TCCGAGCGACGTCAGACA 60.667 61.111 17.16 0.00 40.78 3.41
2126 2369 5.994668 AGAAAATCTCAGAGAGAACACCAAC 59.005 40.000 6.24 0.00 42.27 3.77
2181 2424 3.496130 CCTGCGGCTAGAAATTACATCTG 59.504 47.826 0.00 0.00 0.00 2.90
2182 2425 3.388024 TCCTGCGGCTAGAAATTACATCT 59.612 43.478 0.00 0.00 0.00 2.90
2183 2426 3.728845 TCCTGCGGCTAGAAATTACATC 58.271 45.455 0.00 0.00 0.00 3.06
2184 2427 3.388024 TCTCCTGCGGCTAGAAATTACAT 59.612 43.478 0.00 0.00 0.00 2.29
2208 2459 8.784043 ACACTAGGAACAACATTTTACTGATTC 58.216 33.333 0.00 0.00 0.00 2.52
2260 2511 9.699703 ATTCAAGACTTTCTGAAGTAGTAGTTC 57.300 33.333 10.34 10.34 45.88 3.01
2266 2517 7.062839 CGAGGAATTCAAGACTTTCTGAAGTAG 59.937 40.741 7.93 0.00 45.88 2.57
2271 2522 3.997021 GCGAGGAATTCAAGACTTTCTGA 59.003 43.478 7.93 0.00 0.00 3.27
2293 2544 2.802247 TGTCAGTGCATTCAAGACTTCG 59.198 45.455 0.00 0.00 33.33 3.79
2348 2599 5.848833 AAGTACTACTACCTCCGATTTGG 57.151 43.478 0.00 0.00 40.09 3.28
2392 2643 1.199615 TATCCAACTCATCCGTGCCA 58.800 50.000 0.00 0.00 0.00 4.92
2425 2676 2.588877 CCGCCGATGACATGGGAC 60.589 66.667 19.74 10.05 0.00 4.46
2500 2751 1.402325 CGTCCTGTTCATGTCACGCTA 60.402 52.381 0.00 0.00 0.00 4.26
2732 2994 6.515862 CGGAGAGAGTGAGAGAAAGAAGAAAA 60.516 42.308 0.00 0.00 0.00 2.29
2734 2996 4.457603 CGGAGAGAGTGAGAGAAAGAAGAA 59.542 45.833 0.00 0.00 0.00 2.52
2735 2997 4.006989 CGGAGAGAGTGAGAGAAAGAAGA 58.993 47.826 0.00 0.00 0.00 2.87
2736 2998 3.128589 CCGGAGAGAGTGAGAGAAAGAAG 59.871 52.174 0.00 0.00 0.00 2.85
2781 3043 2.492449 TAGTGTGCTGGAGCTGACGC 62.492 60.000 0.00 0.00 42.66 5.19
2809 3071 9.415008 TGCTAGTGTACTAGTAGTAGTAGTAGT 57.585 37.037 22.79 22.79 45.85 2.73
3070 3345 1.063469 CGACATGTTTGATAACCGGCC 59.937 52.381 0.00 0.00 33.15 6.13
3071 3346 2.004017 TCGACATGTTTGATAACCGGC 58.996 47.619 0.00 0.00 33.15 6.13
3072 3347 4.806775 TGTATCGACATGTTTGATAACCGG 59.193 41.667 18.07 0.00 33.15 5.28
3073 3348 5.959652 TGTATCGACATGTTTGATAACCG 57.040 39.130 18.07 7.84 33.15 4.44
3076 3351 9.767684 GTGATTTTGTATCGACATGTTTGATAA 57.232 29.630 18.07 9.18 34.86 1.75
3093 3372 0.958822 GGAGCCGTTGGTGATTTTGT 59.041 50.000 0.00 0.00 0.00 2.83
3119 3398 2.301296 CCAGTAGGCTCTACCATCATGG 59.699 54.545 0.54 0.54 45.02 3.66
3121 3400 3.619900 TCCAGTAGGCTCTACCATCAT 57.380 47.619 0.00 0.00 43.14 2.45
3122 3401 3.234353 CATCCAGTAGGCTCTACCATCA 58.766 50.000 0.00 0.00 43.14 3.07
3162 3444 5.105106 TGCTAACCTGATCGATTTTCCTGTA 60.105 40.000 0.00 0.00 0.00 2.74
3185 3467 0.882042 AAGTGAACCACGAGCAGCTG 60.882 55.000 10.11 10.11 39.64 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.