Multiple sequence alignment - TraesCS4D01G290300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G290300 chr4D 100.000 2207 0 0 1 2207 461464779 461466985 0.000000e+00 4076.0
1 TraesCS4D01G290300 chr4D 80.870 345 45 15 404 742 43647755 43648084 3.640000e-63 252.0
2 TraesCS4D01G290300 chr4A 94.190 809 38 6 880 1683 7177143 7176339 0.000000e+00 1225.0
3 TraesCS4D01G290300 chr4A 89.670 455 36 6 30 482 7179588 7179143 8.840000e-159 569.0
4 TraesCS4D01G290300 chr4A 90.654 214 16 3 580 792 7177599 7177389 4.640000e-72 281.0
5 TraesCS4D01G290300 chr4A 79.381 291 45 13 404 691 556254660 556254382 8.040000e-45 191.0
6 TraesCS4D01G290300 chr4A 97.170 106 2 1 775 879 7177377 7177272 6.260000e-41 178.0
7 TraesCS4D01G290300 chr4A 94.872 39 0 2 14 52 578548483 578548519 2.370000e-05 60.2
8 TraesCS4D01G290300 chr4B 92.078 669 31 8 994 1658 576745594 576746244 0.000000e+00 922.0
9 TraesCS4D01G290300 chr4B 90.754 411 30 7 1797 2204 167340741 167340336 1.930000e-150 542.0
10 TraesCS4D01G290300 chr4B 90.500 200 16 2 568 767 576744992 576745188 6.040000e-66 261.0
11 TraesCS4D01G290300 chr4B 94.505 91 5 0 880 970 576745509 576745599 8.220000e-30 141.0
12 TraesCS4D01G290300 chr4B 96.386 83 3 0 797 879 576745295 576745377 1.060000e-28 137.0
13 TraesCS4D01G290300 chr4B 100.000 38 0 0 2 39 449121840 449121877 1.090000e-08 71.3
14 TraesCS4D01G290300 chr5D 93.643 409 21 5 1797 2204 283103600 283103196 6.740000e-170 606.0
15 TraesCS4D01G290300 chr5D 97.297 37 0 1 13 49 432005988 432005953 6.580000e-06 62.1
16 TraesCS4D01G290300 chr5D 100.000 31 0 0 1748 1778 134728297 134728327 8.510000e-05 58.4
17 TraesCS4D01G290300 chr3A 92.231 399 27 4 1795 2193 83402673 83402279 1.480000e-156 562.0
18 TraesCS4D01G290300 chr3A 90.617 405 32 6 1800 2203 94382129 94381730 1.160000e-147 532.0
19 TraesCS4D01G290300 chr5B 91.980 399 27 4 1797 2193 526191803 526192198 2.480000e-154 555.0
20 TraesCS4D01G290300 chr5B 75.342 219 29 15 492 702 36870956 36871157 5.050000e-12 82.4
21 TraesCS4D01G290300 chr5B 94.872 39 2 0 13 51 446265814 446265852 6.580000e-06 62.1
22 TraesCS4D01G290300 chr2A 92.386 394 23 7 1797 2189 661702350 661702737 2.480000e-154 555.0
23 TraesCS4D01G290300 chr2A 86.512 215 20 2 994 1208 672348787 672348992 6.130000e-56 228.0
24 TraesCS4D01G290300 chr2A 100.000 36 0 0 13 48 670467133 670467098 1.410000e-07 67.6
25 TraesCS4D01G290300 chr2A 90.000 50 3 2 13 60 535400096 535400047 1.830000e-06 63.9
26 TraesCS4D01G290300 chr7D 91.198 409 31 5 1797 2204 401784115 401784519 3.200000e-153 551.0
27 TraesCS4D01G290300 chr7D 83.673 343 40 13 404 737 602101074 602100739 2.130000e-80 309.0
28 TraesCS4D01G290300 chr7B 90.385 416 36 3 1795 2207 133709759 133709345 5.360000e-151 544.0
29 TraesCS4D01G290300 chr7B 85.714 203 27 2 404 606 20425802 20425602 1.720000e-51 213.0
30 TraesCS4D01G290300 chr3B 90.686 408 33 5 1797 2203 809030977 809031380 2.490000e-149 538.0
31 TraesCS4D01G290300 chr3B 100.000 38 0 0 13 50 43492254 43492217 1.090000e-08 71.3
32 TraesCS4D01G290300 chr1A 85.209 311 39 5 404 708 519270472 519270163 1.650000e-81 313.0
33 TraesCS4D01G290300 chr1A 83.136 338 43 10 404 734 11254683 11255013 1.660000e-76 296.0
34 TraesCS4D01G290300 chr1D 83.090 343 50 6 404 740 423268714 423268374 2.750000e-79 305.0
35 TraesCS4D01G290300 chr1D 92.727 55 3 1 1734 1787 458393387 458393333 6.530000e-11 78.7
36 TraesCS4D01G290300 chr2B 89.401 217 14 2 994 1210 624541436 624541643 4.670000e-67 265.0
37 TraesCS4D01G290300 chr2B 88.462 52 5 1 1734 1785 175932905 175932955 6.580000e-06 62.1
38 TraesCS4D01G290300 chr2D 88.940 217 15 2 994 1210 527393524 527393731 2.170000e-65 259.0
39 TraesCS4D01G290300 chr6B 85.714 231 25 6 454 680 471503198 471502972 1.020000e-58 237.0
40 TraesCS4D01G290300 chr5A 80.528 303 47 9 442 737 659886954 659886657 2.850000e-54 222.0
41 TraesCS4D01G290300 chr3D 88.889 126 11 2 609 734 463187060 463187182 3.800000e-33 152.0
42 TraesCS4D01G290300 chr1B 97.297 37 1 0 13 49 666548257 666548293 1.830000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G290300 chr4D 461464779 461466985 2206 False 4076.00 4076 100.00000 1 2207 1 chr4D.!!$F2 2206
1 TraesCS4D01G290300 chr4A 7176339 7179588 3249 True 563.25 1225 92.92100 30 1683 4 chr4A.!!$R2 1653
2 TraesCS4D01G290300 chr4B 576744992 576746244 1252 False 365.25 922 93.36725 568 1658 4 chr4B.!!$F2 1090

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.178947 AGCTTATCCGGAGAGAGGGG 60.179 60.0 18.94 3.09 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1922 3582 0.105039 CTAATCGAGGAGTGGTGGGC 59.895 60.0 0.0 0.0 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.743208 TGGTCATTGTGCCACACG 58.257 55.556 0.00 0.00 37.14 4.49
19 20 1.153066 TGGTCATTGTGCCACACGT 60.153 52.632 0.00 0.00 37.14 4.49
20 21 1.282570 GGTCATTGTGCCACACGTG 59.717 57.895 15.48 15.48 37.14 4.49
21 22 1.444119 GGTCATTGTGCCACACGTGT 61.444 55.000 17.22 17.22 37.14 4.49
22 23 0.316937 GTCATTGTGCCACACGTGTG 60.317 55.000 36.13 36.13 45.23 3.82
32 33 0.438445 CACACGTGTGGCACTTATCG 59.562 55.000 35.65 18.40 42.10 2.92
33 34 0.669318 ACACGTGTGGCACTTATCGG 60.669 55.000 22.71 13.07 34.19 4.18
34 35 1.740296 ACGTGTGGCACTTATCGGC 60.740 57.895 19.83 0.00 31.34 5.54
35 36 2.798501 CGTGTGGCACTTATCGGCG 61.799 63.158 19.83 0.00 31.34 6.46
36 37 1.740296 GTGTGGCACTTATCGGCGT 60.740 57.895 19.83 0.00 0.00 5.68
37 38 1.447140 TGTGGCACTTATCGGCGTC 60.447 57.895 19.83 0.00 0.00 5.19
38 39 2.171725 GTGGCACTTATCGGCGTCC 61.172 63.158 11.13 0.00 0.00 4.79
45 46 3.000727 CACTTATCGGCGTCCTTCTTTT 58.999 45.455 6.85 0.00 0.00 2.27
77 78 8.426489 GGGACAACATGAATAATGGTAGTACTA 58.574 37.037 0.00 0.00 40.94 1.82
104 105 2.588464 TAGCTTATCCGGAGAGAGGG 57.412 55.000 18.94 4.39 0.00 4.30
105 106 0.178947 AGCTTATCCGGAGAGAGGGG 60.179 60.000 18.94 3.09 0.00 4.79
142 143 3.420893 TGGGAGACATGGATCAAACAAC 58.579 45.455 0.00 0.00 0.00 3.32
162 163 5.699001 ACAACGCAGATGAACACAAAGTATA 59.301 36.000 0.00 0.00 33.32 1.47
196 197 2.096819 TCGCAGGCCGATCAAAATAAAC 59.903 45.455 0.00 0.00 41.89 2.01
197 198 2.159448 CGCAGGCCGATCAAAATAAACA 60.159 45.455 0.00 0.00 40.02 2.83
202 203 2.100749 GCCGATCAAAATAAACAGGGGG 59.899 50.000 0.00 0.00 0.00 5.40
206 207 4.036380 CGATCAAAATAAACAGGGGGCTAC 59.964 45.833 0.00 0.00 0.00 3.58
219 220 0.685660 GGGCTACTCCTTTATCCCCG 59.314 60.000 0.00 0.00 34.39 5.73
224 225 3.743584 GCTACTCCTTTATCCCCGTTTCC 60.744 52.174 0.00 0.00 0.00 3.13
228 229 2.026636 TCCTTTATCCCCGTTTCCTGTG 60.027 50.000 0.00 0.00 0.00 3.66
253 254 5.652014 AGCCGGATCATTTTAATTCACTTGA 59.348 36.000 5.05 0.00 0.00 3.02
273 274 9.981114 CACTTGAAAAATAGTTATTCCCAAGTT 57.019 29.630 15.72 6.78 37.37 2.66
316 317 5.068591 AGTTCCAAATTGTGTAACCACCTTC 59.931 40.000 0.00 0.00 41.09 3.46
317 318 4.798882 TCCAAATTGTGTAACCACCTTCT 58.201 39.130 0.00 0.00 41.09 2.85
318 319 5.205056 TCCAAATTGTGTAACCACCTTCTT 58.795 37.500 0.00 0.00 41.09 2.52
319 320 5.659079 TCCAAATTGTGTAACCACCTTCTTT 59.341 36.000 0.00 0.00 41.09 2.52
320 321 5.983118 CCAAATTGTGTAACCACCTTCTTTC 59.017 40.000 0.00 0.00 41.09 2.62
355 356 2.787601 AACTAAGAACACGCTCGACA 57.212 45.000 0.00 0.00 0.00 4.35
390 391 6.171213 CACTCGGTTTAAAATAACCTCCTCT 58.829 40.000 0.00 0.00 44.38 3.69
409 410 7.401060 TCCTCTGAACTATAGGAGATCTTCT 57.599 40.000 9.00 9.00 34.46 2.85
410 411 8.513139 TCCTCTGAACTATAGGAGATCTTCTA 57.487 38.462 13.32 13.32 34.46 2.10
433 434 3.320610 TCTGAATAGCTAGCCCTCACT 57.679 47.619 12.13 0.00 0.00 3.41
440 441 6.434652 TGAATAGCTAGCCCTCACTAATCTAC 59.565 42.308 12.13 0.00 0.00 2.59
443 444 4.830600 AGCTAGCCCTCACTAATCTACTTC 59.169 45.833 12.13 0.00 0.00 3.01
445 446 5.303333 GCTAGCCCTCACTAATCTACTTCTT 59.697 44.000 2.29 0.00 0.00 2.52
452 453 7.332182 CCCTCACTAATCTACTTCTTTCAACAC 59.668 40.741 0.00 0.00 0.00 3.32
458 459 2.475200 ACTTCTTTCAACACGCAAGC 57.525 45.000 0.00 0.00 45.62 4.01
465 466 1.237533 TCAACACGCAAGCATGTCAT 58.762 45.000 0.00 0.00 45.62 3.06
470 471 1.669265 CACGCAAGCATGTCATCTCAT 59.331 47.619 0.00 0.00 45.62 2.90
471 472 2.096980 CACGCAAGCATGTCATCTCATT 59.903 45.455 0.00 0.00 45.62 2.57
479 480 7.477494 CAAGCATGTCATCTCATTATTCAACA 58.523 34.615 0.00 0.00 0.00 3.33
483 1505 8.562052 GCATGTCATCTCATTATTCAACATGTA 58.438 33.333 0.00 0.00 42.79 2.29
486 1508 9.059260 TGTCATCTCATTATTCAACATGTATGG 57.941 33.333 0.00 0.00 0.00 2.74
491 1513 9.473007 TCTCATTATTCAACATGTATGGGAAAA 57.527 29.630 0.00 0.60 31.97 2.29
496 1518 5.581126 TCAACATGTATGGGAAAATGCTC 57.419 39.130 0.00 0.00 0.00 4.26
500 1522 3.737559 TGTATGGGAAAATGCTCACCT 57.262 42.857 0.00 0.00 0.00 4.00
502 1524 2.905415 ATGGGAAAATGCTCACCTGA 57.095 45.000 0.00 0.00 0.00 3.86
503 1525 2.673775 TGGGAAAATGCTCACCTGAA 57.326 45.000 0.00 0.00 0.00 3.02
506 1528 2.827921 GGGAAAATGCTCACCTGAACAT 59.172 45.455 0.00 0.00 32.72 2.71
507 1529 3.367703 GGGAAAATGCTCACCTGAACATG 60.368 47.826 0.00 0.00 31.85 3.21
508 1530 3.248266 GAAAATGCTCACCTGAACATGC 58.752 45.455 0.00 0.00 31.85 4.06
509 1531 1.913778 AATGCTCACCTGAACATGCA 58.086 45.000 0.00 0.00 31.85 3.96
511 1533 0.890542 TGCTCACCTGAACATGCACC 60.891 55.000 0.00 0.00 0.00 5.01
512 1534 1.589716 GCTCACCTGAACATGCACCC 61.590 60.000 0.00 0.00 0.00 4.61
513 1535 0.250858 CTCACCTGAACATGCACCCA 60.251 55.000 0.00 0.00 0.00 4.51
529 1551 4.989279 CACCCATGCATAAGTAAAAGCT 57.011 40.909 0.00 0.00 0.00 3.74
532 1554 4.887655 ACCCATGCATAAGTAAAAGCTACC 59.112 41.667 0.00 0.00 0.00 3.18
533 1555 5.133221 CCCATGCATAAGTAAAAGCTACCT 58.867 41.667 0.00 0.00 0.00 3.08
535 1557 5.822519 CCATGCATAAGTAAAAGCTACCTCA 59.177 40.000 0.00 0.00 0.00 3.86
536 1558 6.318648 CCATGCATAAGTAAAAGCTACCTCAA 59.681 38.462 0.00 0.00 0.00 3.02
537 1559 6.737254 TGCATAAGTAAAAGCTACCTCAAC 57.263 37.500 0.00 0.00 0.00 3.18
538 1560 6.234920 TGCATAAGTAAAAGCTACCTCAACA 58.765 36.000 0.00 0.00 0.00 3.33
539 1561 6.884295 TGCATAAGTAAAAGCTACCTCAACAT 59.116 34.615 0.00 0.00 0.00 2.71
545 1686 5.473066 AAAAGCTACCTCAACATGCAAAT 57.527 34.783 0.00 0.00 0.00 2.32
547 1688 6.780457 AAAGCTACCTCAACATGCAAATAT 57.220 33.333 0.00 0.00 0.00 1.28
548 1689 5.762825 AGCTACCTCAACATGCAAATATG 57.237 39.130 0.00 0.00 0.00 1.78
711 2159 7.250569 AGAATATATTGCAAAATATTCCGGCG 58.749 34.615 1.71 0.00 42.32 6.46
717 2165 2.436670 CAAAATATTCCGGCGACAACG 58.563 47.619 9.30 0.00 42.93 4.10
718 2166 1.729284 AAATATTCCGGCGACAACGT 58.271 45.000 9.30 0.00 41.98 3.99
801 2326 1.051812 CTCCGCCATTGATAGGTCCT 58.948 55.000 0.00 0.00 0.00 3.85
810 2335 4.383118 CCATTGATAGGTCCTCTCACGTTT 60.383 45.833 6.47 0.00 0.00 3.60
899 2556 2.062971 ATATGCAAGCAACTCCCCAG 57.937 50.000 0.00 0.00 0.00 4.45
920 2577 2.034558 GCTGCAACTCTACAAGGCAAAA 59.965 45.455 0.00 0.00 33.58 2.44
970 2627 1.517257 CTAGACGGCCTGAGCAACG 60.517 63.158 0.00 0.00 42.56 4.10
1212 2869 2.620367 GGCCATCATGGTGTGAAGGTTA 60.620 50.000 5.31 0.00 45.41 2.85
1302 2961 1.376037 GTGGGGACAGGCTTCTTCG 60.376 63.158 0.00 0.00 44.46 3.79
1327 2986 3.525537 TCGTGAGGCTGATTCTCAAATC 58.474 45.455 0.00 0.00 42.13 2.17
1346 3005 0.179127 CTCTGCGAGGATGAGCGAAA 60.179 55.000 0.00 0.00 35.87 3.46
1384 3043 9.557338 GTAATTGTATCTAGATCGTGTATGACC 57.443 37.037 8.95 0.00 0.00 4.02
1410 3069 7.093289 CCTGTGAATACCTCTTCTCCTTCTTTA 60.093 40.741 0.00 0.00 0.00 1.85
1419 3078 6.593382 CCTCTTCTCCTTCTTTATGTTGTCAG 59.407 42.308 0.00 0.00 0.00 3.51
1434 3093 7.572523 ATGTTGTCAGATTGTTTCTTCAGAA 57.427 32.000 0.00 0.00 29.93 3.02
1452 3111 8.632679 TCTTCAGAAATCTTGCTGTAACAAAAT 58.367 29.630 0.00 0.00 33.90 1.82
1558 3217 7.572523 CAATCCTGCAGGTAAATGATCTTTA 57.427 36.000 31.58 8.56 36.34 1.85
1559 3218 7.420800 CAATCCTGCAGGTAAATGATCTTTAC 58.579 38.462 31.58 14.44 36.34 2.01
1560 3219 6.313519 TCCTGCAGGTAAATGATCTTTACT 57.686 37.500 31.58 7.22 35.73 2.24
1561 3220 6.115446 TCCTGCAGGTAAATGATCTTTACTG 58.885 40.000 31.58 15.67 35.73 2.74
1562 3221 6.070251 TCCTGCAGGTAAATGATCTTTACTGA 60.070 38.462 31.58 3.16 35.73 3.41
1564 3223 7.284034 CCTGCAGGTAAATGATCTTTACTGAAT 59.716 37.037 25.53 7.76 35.73 2.57
1565 3224 7.988737 TGCAGGTAAATGATCTTTACTGAATG 58.011 34.615 18.75 15.02 35.73 2.67
1598 3257 6.976934 AATTTTTCCACTAACAGACCATGT 57.023 33.333 0.00 0.00 46.97 3.21
1602 3261 5.401531 TTCCACTAACAGACCATGTAGAC 57.598 43.478 0.00 0.00 43.00 2.59
1605 3264 4.223032 CCACTAACAGACCATGTAGACCTT 59.777 45.833 0.00 0.00 43.00 3.50
1659 3319 3.132111 TCATTCAGGGAAATGATCGACGA 59.868 43.478 0.00 0.00 39.98 4.20
1675 3335 1.302033 CGAGTTTCACCAGGCAGCT 60.302 57.895 0.00 0.00 0.00 4.24
1676 3336 0.886490 CGAGTTTCACCAGGCAGCTT 60.886 55.000 0.00 0.00 0.00 3.74
1683 3343 1.762957 TCACCAGGCAGCTTATAGACC 59.237 52.381 0.00 0.00 0.00 3.85
1684 3344 1.765314 CACCAGGCAGCTTATAGACCT 59.235 52.381 0.00 0.00 0.00 3.85
1685 3345 2.965831 CACCAGGCAGCTTATAGACCTA 59.034 50.000 0.00 0.00 0.00 3.08
1686 3346 3.580458 CACCAGGCAGCTTATAGACCTAT 59.420 47.826 0.00 0.00 0.00 2.57
1687 3347 4.772624 CACCAGGCAGCTTATAGACCTATA 59.227 45.833 0.00 0.00 0.00 1.31
1688 3348 5.423610 CACCAGGCAGCTTATAGACCTATAT 59.576 44.000 0.00 0.00 0.00 0.86
1689 3349 6.607600 CACCAGGCAGCTTATAGACCTATATA 59.392 42.308 0.00 0.00 0.00 0.86
1690 3350 6.836527 ACCAGGCAGCTTATAGACCTATATAG 59.163 42.308 2.46 2.46 0.00 1.31
1691 3351 6.836527 CCAGGCAGCTTATAGACCTATATAGT 59.163 42.308 8.92 0.00 0.00 2.12
1692 3352 7.999545 CCAGGCAGCTTATAGACCTATATAGTA 59.000 40.741 8.92 0.00 0.00 1.82
1693 3353 9.581289 CAGGCAGCTTATAGACCTATATAGTAT 57.419 37.037 8.92 3.38 0.00 2.12
1705 3365 6.257994 CCTATATAGTATAGGTCACGGGGA 57.742 45.833 12.78 0.00 37.08 4.81
1706 3366 6.297582 CCTATATAGTATAGGTCACGGGGAG 58.702 48.000 12.78 0.00 37.08 4.30
1707 3367 5.793034 ATATAGTATAGGTCACGGGGAGT 57.207 43.478 0.00 0.00 0.00 3.85
1708 3368 8.120539 CCTATATAGTATAGGTCACGGGGAGTG 61.121 48.148 12.78 0.00 40.91 3.51
1751 3411 9.897744 TTTTATTGCTTAGAACATCTTCAACAG 57.102 29.630 0.00 0.00 0.00 3.16
1752 3412 5.947228 TTGCTTAGAACATCTTCAACAGG 57.053 39.130 0.00 0.00 0.00 4.00
1753 3413 3.753272 TGCTTAGAACATCTTCAACAGGC 59.247 43.478 0.00 0.00 0.00 4.85
1754 3414 3.181516 GCTTAGAACATCTTCAACAGGCG 60.182 47.826 0.00 0.00 0.00 5.52
1755 3415 1.160137 AGAACATCTTCAACAGGCGC 58.840 50.000 0.00 0.00 0.00 6.53
1756 3416 0.179215 GAACATCTTCAACAGGCGCG 60.179 55.000 0.00 0.00 0.00 6.86
1757 3417 2.099062 CATCTTCAACAGGCGCGC 59.901 61.111 25.94 25.94 0.00 6.86
1758 3418 2.358615 ATCTTCAACAGGCGCGCA 60.359 55.556 34.42 8.19 0.00 6.09
1759 3419 1.965930 ATCTTCAACAGGCGCGCAA 60.966 52.632 34.42 16.34 0.00 4.85
1760 3420 2.187599 ATCTTCAACAGGCGCGCAAC 62.188 55.000 34.42 17.03 0.00 4.17
1761 3421 3.879351 CTTCAACAGGCGCGCAACC 62.879 63.158 34.42 16.19 0.00 3.77
1783 3443 3.668641 CGACGCGCTAAAACCATTT 57.331 47.368 5.73 0.00 0.00 2.32
1784 3444 1.958417 CGACGCGCTAAAACCATTTT 58.042 45.000 5.73 0.00 36.67 1.82
1785 3445 3.106508 CGACGCGCTAAAACCATTTTA 57.893 42.857 5.73 0.00 34.19 1.52
1786 3446 2.836161 CGACGCGCTAAAACCATTTTAC 59.164 45.455 5.73 0.00 34.19 2.01
1787 3447 3.423907 CGACGCGCTAAAACCATTTTACT 60.424 43.478 5.73 0.00 34.19 2.24
1788 3448 4.201608 CGACGCGCTAAAACCATTTTACTA 60.202 41.667 5.73 0.00 34.19 1.82
1789 3449 5.501252 CGACGCGCTAAAACCATTTTACTAT 60.501 40.000 5.73 0.00 34.19 2.12
1790 3450 5.565695 ACGCGCTAAAACCATTTTACTATG 58.434 37.500 5.73 0.00 34.19 2.23
1791 3451 4.436523 CGCGCTAAAACCATTTTACTATGC 59.563 41.667 5.56 0.00 34.19 3.14
1792 3452 4.738252 GCGCTAAAACCATTTTACTATGCC 59.262 41.667 0.00 0.00 34.19 4.40
1793 3453 4.967575 CGCTAAAACCATTTTACTATGCCG 59.032 41.667 0.00 0.00 34.19 5.69
1794 3454 5.220700 CGCTAAAACCATTTTACTATGCCGA 60.221 40.000 0.00 0.00 34.19 5.54
1795 3455 6.557110 GCTAAAACCATTTTACTATGCCGAA 58.443 36.000 0.00 0.00 34.19 4.30
1796 3456 7.030768 GCTAAAACCATTTTACTATGCCGAAA 58.969 34.615 0.00 0.00 34.19 3.46
1797 3457 7.542824 GCTAAAACCATTTTACTATGCCGAAAA 59.457 33.333 0.00 0.00 34.19 2.29
1798 3458 9.413048 CTAAAACCATTTTACTATGCCGAAAAA 57.587 29.630 0.00 0.00 34.19 1.94
1799 3459 8.840833 AAAACCATTTTACTATGCCGAAAAAT 57.159 26.923 0.00 0.00 33.07 1.82
1800 3460 8.474006 AAACCATTTTACTATGCCGAAAAATC 57.526 30.769 0.00 0.00 31.05 2.17
1801 3461 7.164230 ACCATTTTACTATGCCGAAAAATCA 57.836 32.000 0.00 0.00 31.05 2.57
1802 3462 7.607250 ACCATTTTACTATGCCGAAAAATCAA 58.393 30.769 0.00 0.00 31.05 2.57
1803 3463 7.544217 ACCATTTTACTATGCCGAAAAATCAAC 59.456 33.333 0.00 0.00 31.05 3.18
1804 3464 7.543868 CCATTTTACTATGCCGAAAAATCAACA 59.456 33.333 0.00 0.00 31.05 3.33
1805 3465 8.920665 CATTTTACTATGCCGAAAAATCAACAA 58.079 29.630 0.00 0.00 31.05 2.83
1806 3466 9.651913 ATTTTACTATGCCGAAAAATCAACAAT 57.348 25.926 0.00 0.00 28.00 2.71
1814 3474 9.651913 ATGCCGAAAAATCAACAATAAATAGTT 57.348 25.926 0.00 0.00 0.00 2.24
1815 3475 9.482627 TGCCGAAAAATCAACAATAAATAGTTT 57.517 25.926 0.00 0.00 0.00 2.66
1816 3476 9.739786 GCCGAAAAATCAACAATAAATAGTTTG 57.260 29.630 0.00 0.00 0.00 2.93
1892 3552 9.677567 AGTTCAACAATACAACATCAAACATAC 57.322 29.630 0.00 0.00 0.00 2.39
1893 3553 9.457110 GTTCAACAATACAACATCAAACATACA 57.543 29.630 0.00 0.00 0.00 2.29
1895 3555 9.457110 TCAACAATACAACATCAAACATACAAC 57.543 29.630 0.00 0.00 0.00 3.32
1896 3556 9.242477 CAACAATACAACATCAAACATACAACA 57.758 29.630 0.00 0.00 0.00 3.33
1897 3557 9.979578 AACAATACAACATCAAACATACAACAT 57.020 25.926 0.00 0.00 0.00 2.71
1898 3558 9.624697 ACAATACAACATCAAACATACAACATC 57.375 29.630 0.00 0.00 0.00 3.06
1899 3559 9.623350 CAATACAACATCAAACATACAACATCA 57.377 29.630 0.00 0.00 0.00 3.07
1900 3560 9.624697 AATACAACATCAAACATACAACATCAC 57.375 29.630 0.00 0.00 0.00 3.06
1901 3561 7.275888 ACAACATCAAACATACAACATCACT 57.724 32.000 0.00 0.00 0.00 3.41
1902 3562 8.389779 ACAACATCAAACATACAACATCACTA 57.610 30.769 0.00 0.00 0.00 2.74
1903 3563 8.506437 ACAACATCAAACATACAACATCACTAG 58.494 33.333 0.00 0.00 0.00 2.57
1904 3564 8.506437 CAACATCAAACATACAACATCACTAGT 58.494 33.333 0.00 0.00 0.00 2.57
1905 3565 8.621532 ACATCAAACATACAACATCACTAGTT 57.378 30.769 0.00 0.00 0.00 2.24
1906 3566 9.066892 ACATCAAACATACAACATCACTAGTTT 57.933 29.630 0.00 0.00 0.00 2.66
1907 3567 9.897744 CATCAAACATACAACATCACTAGTTTT 57.102 29.630 0.00 0.00 0.00 2.43
1908 3568 9.897744 ATCAAACATACAACATCACTAGTTTTG 57.102 29.630 0.00 0.00 0.00 2.44
1909 3569 8.898761 TCAAACATACAACATCACTAGTTTTGT 58.101 29.630 11.60 11.60 34.79 2.83
1910 3570 9.169468 CAAACATACAACATCACTAGTTTTGTC 57.831 33.333 10.64 0.00 32.73 3.18
1911 3571 7.117241 ACATACAACATCACTAGTTTTGTCG 57.883 36.000 10.64 2.81 32.73 4.35
1912 3572 6.147164 ACATACAACATCACTAGTTTTGTCGG 59.853 38.462 10.64 7.95 32.73 4.79
1913 3573 3.250040 ACAACATCACTAGTTTTGTCGGC 59.750 43.478 7.69 0.00 0.00 5.54
1914 3574 2.423577 ACATCACTAGTTTTGTCGGCC 58.576 47.619 0.00 0.00 0.00 6.13
1915 3575 2.224426 ACATCACTAGTTTTGTCGGCCA 60.224 45.455 2.24 0.00 0.00 5.36
1916 3576 2.851263 TCACTAGTTTTGTCGGCCAT 57.149 45.000 2.24 0.00 0.00 4.40
1917 3577 3.134574 TCACTAGTTTTGTCGGCCATT 57.865 42.857 2.24 0.00 0.00 3.16
1918 3578 3.071479 TCACTAGTTTTGTCGGCCATTC 58.929 45.455 2.24 0.00 0.00 2.67
1919 3579 2.161609 CACTAGTTTTGTCGGCCATTCC 59.838 50.000 2.24 0.00 0.00 3.01
1920 3580 2.224670 ACTAGTTTTGTCGGCCATTCCA 60.225 45.455 2.24 0.00 34.01 3.53
1921 3581 1.923356 AGTTTTGTCGGCCATTCCAT 58.077 45.000 2.24 0.00 34.01 3.41
1922 3582 1.545582 AGTTTTGTCGGCCATTCCATG 59.454 47.619 2.24 0.00 34.01 3.66
1923 3583 0.246086 TTTTGTCGGCCATTCCATGC 59.754 50.000 2.24 0.00 34.01 4.06
1924 3584 1.603236 TTTGTCGGCCATTCCATGCC 61.603 55.000 2.24 0.00 44.41 4.40
1925 3585 3.219198 GTCGGCCATTCCATGCCC 61.219 66.667 2.24 0.00 45.07 5.36
1926 3586 3.737352 TCGGCCATTCCATGCCCA 61.737 61.111 2.24 0.00 45.07 5.36
1927 3587 3.530260 CGGCCATTCCATGCCCAC 61.530 66.667 2.24 0.00 45.07 4.61
1928 3588 3.156556 GGCCATTCCATGCCCACC 61.157 66.667 0.00 0.00 41.97 4.61
1929 3589 2.364056 GCCATTCCATGCCCACCA 60.364 61.111 0.00 0.00 0.00 4.17
1930 3590 2.724273 GCCATTCCATGCCCACCAC 61.724 63.158 0.00 0.00 0.00 4.16
1931 3591 1.000739 CCATTCCATGCCCACCACT 59.999 57.895 0.00 0.00 0.00 4.00
1932 3592 1.039233 CCATTCCATGCCCACCACTC 61.039 60.000 0.00 0.00 0.00 3.51
1933 3593 1.039233 CATTCCATGCCCACCACTCC 61.039 60.000 0.00 0.00 0.00 3.85
1934 3594 1.217057 ATTCCATGCCCACCACTCCT 61.217 55.000 0.00 0.00 0.00 3.69
1935 3595 1.852157 TTCCATGCCCACCACTCCTC 61.852 60.000 0.00 0.00 0.00 3.71
1936 3596 2.124983 CATGCCCACCACTCCTCG 60.125 66.667 0.00 0.00 0.00 4.63
1937 3597 2.284625 ATGCCCACCACTCCTCGA 60.285 61.111 0.00 0.00 0.00 4.04
1938 3598 1.690633 ATGCCCACCACTCCTCGAT 60.691 57.895 0.00 0.00 0.00 3.59
1939 3599 1.274703 ATGCCCACCACTCCTCGATT 61.275 55.000 0.00 0.00 0.00 3.34
1940 3600 0.616395 TGCCCACCACTCCTCGATTA 60.616 55.000 0.00 0.00 0.00 1.75
1941 3601 0.105039 GCCCACCACTCCTCGATTAG 59.895 60.000 0.00 0.00 0.00 1.73
1942 3602 1.776662 CCCACCACTCCTCGATTAGA 58.223 55.000 1.48 0.00 0.00 2.10
1943 3603 2.320781 CCCACCACTCCTCGATTAGAT 58.679 52.381 1.48 0.00 0.00 1.98
1944 3604 2.297597 CCCACCACTCCTCGATTAGATC 59.702 54.545 1.48 0.00 0.00 2.75
1945 3605 2.297597 CCACCACTCCTCGATTAGATCC 59.702 54.545 1.48 0.00 0.00 3.36
1946 3606 3.226777 CACCACTCCTCGATTAGATCCT 58.773 50.000 1.48 0.00 0.00 3.24
1947 3607 3.639094 CACCACTCCTCGATTAGATCCTT 59.361 47.826 1.48 0.00 0.00 3.36
1948 3608 4.100189 CACCACTCCTCGATTAGATCCTTT 59.900 45.833 1.48 0.00 0.00 3.11
1949 3609 4.717280 ACCACTCCTCGATTAGATCCTTTT 59.283 41.667 1.48 0.00 0.00 2.27
1950 3610 5.053145 CCACTCCTCGATTAGATCCTTTTG 58.947 45.833 1.48 0.00 0.00 2.44
1951 3611 5.163405 CCACTCCTCGATTAGATCCTTTTGA 60.163 44.000 1.48 0.00 0.00 2.69
1952 3612 6.341316 CACTCCTCGATTAGATCCTTTTGAA 58.659 40.000 1.48 0.00 0.00 2.69
1953 3613 6.478344 CACTCCTCGATTAGATCCTTTTGAAG 59.522 42.308 1.48 0.00 0.00 3.02
1954 3614 6.381420 ACTCCTCGATTAGATCCTTTTGAAGA 59.619 38.462 1.48 0.00 0.00 2.87
1955 3615 6.810911 TCCTCGATTAGATCCTTTTGAAGAG 58.189 40.000 0.00 0.00 0.00 2.85
1956 3616 5.465056 CCTCGATTAGATCCTTTTGAAGAGC 59.535 44.000 0.00 0.00 0.00 4.09
1957 3617 5.977635 TCGATTAGATCCTTTTGAAGAGCA 58.022 37.500 0.00 0.00 0.00 4.26
1958 3618 6.586344 TCGATTAGATCCTTTTGAAGAGCAT 58.414 36.000 0.00 0.00 0.00 3.79
1959 3619 6.703607 TCGATTAGATCCTTTTGAAGAGCATC 59.296 38.462 0.00 0.00 0.00 3.91
1960 3620 6.481313 CGATTAGATCCTTTTGAAGAGCATCA 59.519 38.462 0.00 0.00 37.82 3.07
1961 3621 7.172875 CGATTAGATCCTTTTGAAGAGCATCAT 59.827 37.037 0.00 0.00 37.82 2.45
1962 3622 7.563888 TTAGATCCTTTTGAAGAGCATCATG 57.436 36.000 0.00 0.00 37.82 3.07
1963 3623 4.338682 AGATCCTTTTGAAGAGCATCATGC 59.661 41.667 0.00 0.00 45.46 4.06
1978 3638 2.890961 TGCGTTTTGGCACGTCGA 60.891 55.556 0.00 0.00 42.43 4.20
1979 3639 2.325166 GCGTTTTGGCACGTCGAA 59.675 55.556 0.00 0.00 42.43 3.71
1980 3640 1.082366 GCGTTTTGGCACGTCGAAT 60.082 52.632 0.00 0.00 42.43 3.34
1981 3641 1.327292 GCGTTTTGGCACGTCGAATG 61.327 55.000 0.00 0.00 42.43 2.67
1982 3642 0.724453 CGTTTTGGCACGTCGAATGG 60.724 55.000 0.00 0.00 35.34 3.16
1983 3643 1.001745 GTTTTGGCACGTCGAATGGC 61.002 55.000 15.37 15.37 42.74 4.40
1985 3645 2.046411 TGGCACGTCGAATGGCAT 60.046 55.556 19.58 0.00 46.63 4.40
1986 3646 2.397754 TGGCACGTCGAATGGCATG 61.398 57.895 19.58 0.00 46.63 4.06
1987 3647 2.106074 GGCACGTCGAATGGCATGA 61.106 57.895 16.84 0.00 42.03 3.07
1988 3648 1.439353 GGCACGTCGAATGGCATGAT 61.439 55.000 16.84 0.00 42.03 2.45
1989 3649 1.217001 GCACGTCGAATGGCATGATA 58.783 50.000 0.00 0.00 0.00 2.15
1990 3650 1.193203 GCACGTCGAATGGCATGATAG 59.807 52.381 0.00 0.00 0.00 2.08
1991 3651 1.794701 CACGTCGAATGGCATGATAGG 59.205 52.381 0.00 0.00 0.00 2.57
1992 3652 1.686587 ACGTCGAATGGCATGATAGGA 59.313 47.619 0.00 0.00 0.00 2.94
1993 3653 2.288457 ACGTCGAATGGCATGATAGGAG 60.288 50.000 0.00 0.00 0.00 3.69
1994 3654 2.693069 GTCGAATGGCATGATAGGAGG 58.307 52.381 0.00 0.00 0.00 4.30
1995 3655 1.002430 TCGAATGGCATGATAGGAGGC 59.998 52.381 0.00 0.00 0.00 4.70
1996 3656 1.271001 CGAATGGCATGATAGGAGGCA 60.271 52.381 0.00 0.00 42.19 4.75
1997 3657 2.811504 CGAATGGCATGATAGGAGGCAA 60.812 50.000 0.00 0.00 41.29 4.52
1998 3658 2.283145 ATGGCATGATAGGAGGCAAC 57.717 50.000 0.00 0.00 41.29 4.17
1999 3659 0.918258 TGGCATGATAGGAGGCAACA 59.082 50.000 0.00 0.00 41.41 3.33
2000 3660 1.284491 TGGCATGATAGGAGGCAACAA 59.716 47.619 0.00 0.00 41.41 2.83
2001 3661 2.291475 TGGCATGATAGGAGGCAACAAA 60.291 45.455 0.00 0.00 41.41 2.83
2002 3662 2.961062 GGCATGATAGGAGGCAACAAAT 59.039 45.455 0.00 0.00 41.41 2.32
2003 3663 3.005155 GGCATGATAGGAGGCAACAAATC 59.995 47.826 0.00 0.00 41.41 2.17
2004 3664 3.633525 GCATGATAGGAGGCAACAAATCA 59.366 43.478 0.00 0.00 41.41 2.57
2005 3665 4.261489 GCATGATAGGAGGCAACAAATCAG 60.261 45.833 0.00 0.00 41.41 2.90
2006 3666 3.889815 TGATAGGAGGCAACAAATCAGG 58.110 45.455 0.00 0.00 41.41 3.86
2007 3667 2.128771 TAGGAGGCAACAAATCAGGC 57.871 50.000 0.00 0.00 41.41 4.85
2008 3668 0.613012 AGGAGGCAACAAATCAGGCC 60.613 55.000 0.00 0.00 46.77 5.19
2010 3670 4.994744 GGCAACAAATCAGGCCAC 57.005 55.556 5.01 0.00 45.70 5.01
2011 3671 1.293179 GGCAACAAATCAGGCCACC 59.707 57.895 5.01 0.00 45.70 4.61
2012 3672 1.293179 GCAACAAATCAGGCCACCC 59.707 57.895 5.01 0.00 0.00 4.61
2013 3673 1.187567 GCAACAAATCAGGCCACCCT 61.188 55.000 5.01 0.00 44.25 4.34
2014 3674 0.890683 CAACAAATCAGGCCACCCTC 59.109 55.000 5.01 0.00 40.33 4.30
2015 3675 0.609131 AACAAATCAGGCCACCCTCG 60.609 55.000 5.01 0.00 40.33 4.63
2016 3676 2.044946 AAATCAGGCCACCCTCGC 60.045 61.111 5.01 0.00 40.33 5.03
2017 3677 2.905996 AAATCAGGCCACCCTCGCA 61.906 57.895 5.01 0.00 40.33 5.10
2018 3678 2.826777 AAATCAGGCCACCCTCGCAG 62.827 60.000 5.01 0.00 40.33 5.18
2033 3693 4.154347 CAGCCCTCCTCCGCACTC 62.154 72.222 0.00 0.00 0.00 3.51
2037 3697 4.803426 CCTCCTCCGCACTCGCAC 62.803 72.222 0.00 0.00 38.40 5.34
2038 3698 4.056125 CTCCTCCGCACTCGCACA 62.056 66.667 0.00 0.00 38.40 4.57
2039 3699 3.978723 CTCCTCCGCACTCGCACAG 62.979 68.421 0.00 0.00 38.40 3.66
2041 3701 4.056125 CTCCGCACTCGCACAGGA 62.056 66.667 0.00 0.00 38.40 3.86
2042 3702 4.357947 TCCGCACTCGCACAGGAC 62.358 66.667 0.00 0.00 38.40 3.85
2043 3703 4.662961 CCGCACTCGCACAGGACA 62.663 66.667 0.00 0.00 38.40 4.02
2044 3704 2.433145 CGCACTCGCACAGGACAT 60.433 61.111 0.00 0.00 38.40 3.06
2045 3705 2.447887 CGCACTCGCACAGGACATC 61.448 63.158 0.00 0.00 38.40 3.06
2046 3706 2.103042 GCACTCGCACAGGACATCC 61.103 63.158 0.00 0.00 38.36 3.51
2047 3707 1.448540 CACTCGCACAGGACATCCC 60.449 63.158 0.00 0.00 36.42 3.85
2048 3708 1.913262 ACTCGCACAGGACATCCCA 60.913 57.895 0.00 0.00 37.41 4.37
2049 3709 1.296392 CTCGCACAGGACATCCCAA 59.704 57.895 0.00 0.00 37.41 4.12
2050 3710 0.742281 CTCGCACAGGACATCCCAAG 60.742 60.000 0.00 0.00 37.41 3.61
2051 3711 1.191489 TCGCACAGGACATCCCAAGA 61.191 55.000 0.00 0.00 37.41 3.02
2052 3712 0.742281 CGCACAGGACATCCCAAGAG 60.742 60.000 0.00 0.00 37.41 2.85
2053 3713 1.028868 GCACAGGACATCCCAAGAGC 61.029 60.000 0.00 0.00 37.41 4.09
2054 3714 0.617413 CACAGGACATCCCAAGAGCT 59.383 55.000 0.00 0.00 37.41 4.09
2055 3715 0.908198 ACAGGACATCCCAAGAGCTC 59.092 55.000 5.27 5.27 37.41 4.09
2056 3716 0.907486 CAGGACATCCCAAGAGCTCA 59.093 55.000 17.77 0.00 37.41 4.26
2057 3717 1.489649 CAGGACATCCCAAGAGCTCAT 59.510 52.381 17.77 0.00 37.41 2.90
2058 3718 2.702478 CAGGACATCCCAAGAGCTCATA 59.298 50.000 17.77 0.00 37.41 2.15
2059 3719 2.703007 AGGACATCCCAAGAGCTCATAC 59.297 50.000 17.77 0.00 37.41 2.39
2060 3720 2.703007 GGACATCCCAAGAGCTCATACT 59.297 50.000 17.77 0.00 34.14 2.12
2061 3721 3.494048 GGACATCCCAAGAGCTCATACTG 60.494 52.174 17.77 7.28 34.14 2.74
2062 3722 3.378512 ACATCCCAAGAGCTCATACTGA 58.621 45.455 17.77 5.98 0.00 3.41
2063 3723 3.387374 ACATCCCAAGAGCTCATACTGAG 59.613 47.826 17.77 3.34 46.90 3.35
2083 3743 8.367660 ACTGAGAATAGTCTAAATCTTGTCCA 57.632 34.615 0.00 0.00 32.80 4.02
2084 3744 8.254508 ACTGAGAATAGTCTAAATCTTGTCCAC 58.745 37.037 0.00 0.00 32.80 4.02
2085 3745 8.134202 TGAGAATAGTCTAAATCTTGTCCACA 57.866 34.615 0.00 0.00 32.80 4.17
2086 3746 8.035394 TGAGAATAGTCTAAATCTTGTCCACAC 58.965 37.037 0.00 0.00 32.80 3.82
2087 3747 8.140112 AGAATAGTCTAAATCTTGTCCACACT 57.860 34.615 0.00 0.00 29.93 3.55
2088 3748 8.254508 AGAATAGTCTAAATCTTGTCCACACTC 58.745 37.037 0.00 0.00 29.93 3.51
2089 3749 5.808366 AGTCTAAATCTTGTCCACACTCA 57.192 39.130 0.00 0.00 0.00 3.41
2090 3750 6.365970 AGTCTAAATCTTGTCCACACTCAT 57.634 37.500 0.00 0.00 0.00 2.90
2091 3751 6.773638 AGTCTAAATCTTGTCCACACTCATT 58.226 36.000 0.00 0.00 0.00 2.57
2092 3752 6.876257 AGTCTAAATCTTGTCCACACTCATTC 59.124 38.462 0.00 0.00 0.00 2.67
2093 3753 6.876257 GTCTAAATCTTGTCCACACTCATTCT 59.124 38.462 0.00 0.00 0.00 2.40
2094 3754 7.064016 GTCTAAATCTTGTCCACACTCATTCTC 59.936 40.741 0.00 0.00 0.00 2.87
2095 3755 3.303881 TCTTGTCCACACTCATTCTCG 57.696 47.619 0.00 0.00 0.00 4.04
2096 3756 2.890945 TCTTGTCCACACTCATTCTCGA 59.109 45.455 0.00 0.00 0.00 4.04
2097 3757 3.511540 TCTTGTCCACACTCATTCTCGAT 59.488 43.478 0.00 0.00 0.00 3.59
2098 3758 3.236632 TGTCCACACTCATTCTCGATG 57.763 47.619 0.00 0.00 37.08 3.84
2099 3759 2.825532 TGTCCACACTCATTCTCGATGA 59.174 45.455 0.00 0.00 42.42 2.92
2100 3760 3.448660 TGTCCACACTCATTCTCGATGAT 59.551 43.478 0.00 0.00 43.59 2.45
2101 3761 4.047822 GTCCACACTCATTCTCGATGATC 58.952 47.826 0.00 0.00 43.59 2.92
2102 3762 3.048501 CCACACTCATTCTCGATGATCG 58.951 50.000 8.83 8.83 43.59 3.69
2103 3763 3.489908 CCACACTCATTCTCGATGATCGT 60.490 47.826 15.06 0.00 43.59 3.73
2104 3764 3.485013 CACACTCATTCTCGATGATCGTG 59.515 47.826 15.06 12.58 43.59 4.35
2105 3765 3.129462 ACACTCATTCTCGATGATCGTGT 59.871 43.478 15.06 6.20 43.64 4.49
2106 3766 4.335594 ACACTCATTCTCGATGATCGTGTA 59.664 41.667 15.06 6.70 45.17 2.90
2107 3767 5.163652 ACACTCATTCTCGATGATCGTGTAA 60.164 40.000 15.06 8.03 45.17 2.41
2108 3768 5.917447 CACTCATTCTCGATGATCGTGTAAT 59.083 40.000 15.06 9.85 43.59 1.89
2109 3769 5.917447 ACTCATTCTCGATGATCGTGTAATG 59.083 40.000 21.58 21.58 43.59 1.90
2110 3770 4.681483 TCATTCTCGATGATCGTGTAATGC 59.319 41.667 22.21 0.00 39.83 3.56
2111 3771 3.708563 TCTCGATGATCGTGTAATGCA 57.291 42.857 15.06 0.00 41.35 3.96
2112 3772 4.243007 TCTCGATGATCGTGTAATGCAT 57.757 40.909 15.06 0.00 41.35 3.96
2113 3773 3.983344 TCTCGATGATCGTGTAATGCATG 59.017 43.478 15.06 0.00 41.35 4.06
2114 3774 3.976169 TCGATGATCGTGTAATGCATGA 58.024 40.909 15.06 0.00 46.05 3.07
2121 3781 3.594134 TCGTGTAATGCATGATCACACA 58.406 40.909 23.00 0.00 39.52 3.72
2122 3782 3.999663 TCGTGTAATGCATGATCACACAA 59.000 39.130 23.00 10.79 39.52 3.33
2123 3783 4.093261 TCGTGTAATGCATGATCACACAAG 59.907 41.667 23.00 13.65 39.52 3.16
2124 3784 4.100529 GTGTAATGCATGATCACACAAGC 58.899 43.478 20.52 0.00 39.39 4.01
2125 3785 2.554806 AATGCATGATCACACAAGCG 57.445 45.000 0.00 0.00 0.00 4.68
2126 3786 1.456296 ATGCATGATCACACAAGCGT 58.544 45.000 0.00 0.00 0.00 5.07
2127 3787 1.237533 TGCATGATCACACAAGCGTT 58.762 45.000 0.00 0.00 0.00 4.84
2128 3788 1.197492 TGCATGATCACACAAGCGTTC 59.803 47.619 0.00 0.00 0.00 3.95
2129 3789 1.197492 GCATGATCACACAAGCGTTCA 59.803 47.619 0.00 0.00 0.00 3.18
2130 3790 2.159476 GCATGATCACACAAGCGTTCAT 60.159 45.455 0.00 0.00 0.00 2.57
2131 3791 3.422655 CATGATCACACAAGCGTTCATG 58.577 45.455 0.00 0.00 35.86 3.07
2132 3792 2.765122 TGATCACACAAGCGTTCATGA 58.235 42.857 0.00 0.00 0.00 3.07
2133 3793 3.337358 TGATCACACAAGCGTTCATGAT 58.663 40.909 0.00 0.00 0.00 2.45
2134 3794 3.125658 TGATCACACAAGCGTTCATGATG 59.874 43.478 0.00 0.00 0.00 3.07
2135 3795 2.493035 TCACACAAGCGTTCATGATGT 58.507 42.857 0.00 0.00 0.00 3.06
2136 3796 3.658709 TCACACAAGCGTTCATGATGTA 58.341 40.909 0.00 0.00 0.00 2.29
2137 3797 3.431912 TCACACAAGCGTTCATGATGTAC 59.568 43.478 0.00 0.00 0.00 2.90
2138 3798 2.742053 ACACAAGCGTTCATGATGTACC 59.258 45.455 0.00 0.00 0.00 3.34
2139 3799 2.741517 CACAAGCGTTCATGATGTACCA 59.258 45.455 0.00 0.00 0.00 3.25
2140 3800 3.188254 CACAAGCGTTCATGATGTACCAA 59.812 43.478 0.00 0.00 0.00 3.67
2141 3801 3.818210 ACAAGCGTTCATGATGTACCAAA 59.182 39.130 0.00 0.00 0.00 3.28
2142 3802 4.083324 ACAAGCGTTCATGATGTACCAAAG 60.083 41.667 0.00 0.00 0.00 2.77
2143 3803 3.009723 AGCGTTCATGATGTACCAAAGG 58.990 45.455 0.00 0.00 0.00 3.11
2144 3804 3.006940 GCGTTCATGATGTACCAAAGGA 58.993 45.455 0.00 0.00 0.00 3.36
2145 3805 3.627577 GCGTTCATGATGTACCAAAGGAT 59.372 43.478 0.00 0.00 0.00 3.24
2146 3806 4.260784 GCGTTCATGATGTACCAAAGGATC 60.261 45.833 0.00 0.00 0.00 3.36
2147 3807 5.118990 CGTTCATGATGTACCAAAGGATCT 58.881 41.667 0.00 0.00 0.00 2.75
2148 3808 5.586243 CGTTCATGATGTACCAAAGGATCTT 59.414 40.000 0.00 0.00 0.00 2.40
2149 3809 6.094048 CGTTCATGATGTACCAAAGGATCTTT 59.906 38.462 0.00 0.00 0.00 2.52
2150 3810 7.362056 CGTTCATGATGTACCAAAGGATCTTTT 60.362 37.037 0.00 0.00 0.00 2.27
2151 3811 8.956426 GTTCATGATGTACCAAAGGATCTTTTA 58.044 33.333 2.06 0.00 0.00 1.52
2152 3812 9.527157 TTCATGATGTACCAAAGGATCTTTTAA 57.473 29.630 2.06 0.00 0.00 1.52
2153 3813 9.699410 TCATGATGTACCAAAGGATCTTTTAAT 57.301 29.630 2.06 0.00 0.00 1.40
2154 3814 9.956720 CATGATGTACCAAAGGATCTTTTAATC 57.043 33.333 2.06 3.27 0.00 1.75
2155 3815 8.519799 TGATGTACCAAAGGATCTTTTAATCC 57.480 34.615 2.06 0.00 44.81 3.01
2156 3816 7.559897 TGATGTACCAAAGGATCTTTTAATCCC 59.440 37.037 2.06 0.00 45.48 3.85
2157 3817 6.795590 TGTACCAAAGGATCTTTTAATCCCA 58.204 36.000 2.06 0.00 45.48 4.37
2158 3818 7.242359 TGTACCAAAGGATCTTTTAATCCCAA 58.758 34.615 2.06 0.00 45.48 4.12
2159 3819 7.730784 TGTACCAAAGGATCTTTTAATCCCAAA 59.269 33.333 2.06 0.00 45.48 3.28
2160 3820 7.625498 ACCAAAGGATCTTTTAATCCCAAAA 57.375 32.000 2.06 0.00 45.48 2.44
2161 3821 8.218423 ACCAAAGGATCTTTTAATCCCAAAAT 57.782 30.769 2.06 0.00 45.48 1.82
2162 3822 8.321353 ACCAAAGGATCTTTTAATCCCAAAATC 58.679 33.333 2.06 0.00 45.48 2.17
2163 3823 8.542926 CCAAAGGATCTTTTAATCCCAAAATCT 58.457 33.333 2.06 0.00 45.48 2.40
2166 3826 8.470657 AGGATCTTTTAATCCCAAAATCTAGC 57.529 34.615 0.00 0.00 45.48 3.42
2167 3827 7.507277 AGGATCTTTTAATCCCAAAATCTAGCC 59.493 37.037 0.00 0.00 45.48 3.93
2168 3828 6.693315 TCTTTTAATCCCAAAATCTAGCCG 57.307 37.500 0.00 0.00 0.00 5.52
2169 3829 5.592688 TCTTTTAATCCCAAAATCTAGCCGG 59.407 40.000 0.00 0.00 0.00 6.13
2170 3830 4.513406 TTAATCCCAAAATCTAGCCGGT 57.487 40.909 1.90 0.00 0.00 5.28
2171 3831 2.640316 ATCCCAAAATCTAGCCGGTC 57.360 50.000 1.90 0.00 0.00 4.79
2172 3832 0.544697 TCCCAAAATCTAGCCGGTCC 59.455 55.000 1.90 0.00 0.00 4.46
2173 3833 0.546598 CCCAAAATCTAGCCGGTCCT 59.453 55.000 1.90 0.00 0.00 3.85
2174 3834 1.475213 CCCAAAATCTAGCCGGTCCTC 60.475 57.143 1.90 0.00 0.00 3.71
2175 3835 1.486726 CCAAAATCTAGCCGGTCCTCT 59.513 52.381 1.90 0.00 0.00 3.69
2176 3836 2.483889 CCAAAATCTAGCCGGTCCTCTC 60.484 54.545 1.90 0.00 0.00 3.20
2177 3837 2.160721 AAATCTAGCCGGTCCTCTCA 57.839 50.000 1.90 0.00 0.00 3.27
2178 3838 1.404843 AATCTAGCCGGTCCTCTCAC 58.595 55.000 1.90 0.00 0.00 3.51
2179 3839 0.259065 ATCTAGCCGGTCCTCTCACA 59.741 55.000 1.90 0.00 0.00 3.58
2180 3840 0.039180 TCTAGCCGGTCCTCTCACAA 59.961 55.000 1.90 0.00 0.00 3.33
2181 3841 1.115467 CTAGCCGGTCCTCTCACAAT 58.885 55.000 1.90 0.00 0.00 2.71
2182 3842 2.092049 TCTAGCCGGTCCTCTCACAATA 60.092 50.000 1.90 0.00 0.00 1.90
2183 3843 1.115467 AGCCGGTCCTCTCACAATAG 58.885 55.000 1.90 0.00 0.00 1.73
2184 3844 0.530870 GCCGGTCCTCTCACAATAGC 60.531 60.000 1.90 0.00 0.00 2.97
2185 3845 0.824109 CCGGTCCTCTCACAATAGCA 59.176 55.000 0.00 0.00 0.00 3.49
2186 3846 1.207089 CCGGTCCTCTCACAATAGCAA 59.793 52.381 0.00 0.00 0.00 3.91
2187 3847 2.354704 CCGGTCCTCTCACAATAGCAAA 60.355 50.000 0.00 0.00 0.00 3.68
2188 3848 3.535561 CGGTCCTCTCACAATAGCAAAT 58.464 45.455 0.00 0.00 0.00 2.32
2189 3849 3.941483 CGGTCCTCTCACAATAGCAAATT 59.059 43.478 0.00 0.00 0.00 1.82
2190 3850 4.201851 CGGTCCTCTCACAATAGCAAATTG 60.202 45.833 9.54 9.54 35.29 2.32
2191 3851 4.096984 GGTCCTCTCACAATAGCAAATTGG 59.903 45.833 14.18 5.71 33.56 3.16
2192 3852 4.096984 GTCCTCTCACAATAGCAAATTGGG 59.903 45.833 14.18 11.06 33.91 4.12
2193 3853 4.018506 TCCTCTCACAATAGCAAATTGGGA 60.019 41.667 14.03 14.03 38.94 4.37
2194 3854 4.891756 CCTCTCACAATAGCAAATTGGGAT 59.108 41.667 14.85 0.00 40.26 3.85
2195 3855 5.221185 CCTCTCACAATAGCAAATTGGGATG 60.221 44.000 14.85 11.38 40.26 3.51
2196 3856 4.098349 TCTCACAATAGCAAATTGGGATGC 59.902 41.667 14.85 0.00 40.26 3.91
2197 3857 3.132646 TCACAATAGCAAATTGGGATGCC 59.867 43.478 11.51 0.00 43.57 4.40
2198 3858 3.106054 ACAATAGCAAATTGGGATGCCA 58.894 40.909 0.00 0.00 43.57 4.92
2199 3859 3.518705 ACAATAGCAAATTGGGATGCCAA 59.481 39.130 21.95 21.95 43.57 4.52
2200 3860 4.019501 ACAATAGCAAATTGGGATGCCAAA 60.020 37.500 23.50 5.45 43.57 3.28
2201 3861 5.127491 CAATAGCAAATTGGGATGCCAAAT 58.873 37.500 23.50 12.27 43.57 2.32
2202 3862 3.271055 AGCAAATTGGGATGCCAAATC 57.729 42.857 23.50 11.64 43.57 2.17
2203 3863 2.092807 AGCAAATTGGGATGCCAAATCC 60.093 45.455 23.50 11.33 43.57 3.01
2204 3864 2.092807 GCAAATTGGGATGCCAAATCCT 60.093 45.455 23.50 3.06 38.26 3.24
2205 3865 3.537580 CAAATTGGGATGCCAAATCCTG 58.462 45.455 23.50 13.08 38.26 3.86
2206 3866 2.852714 ATTGGGATGCCAAATCCTGA 57.147 45.000 23.50 0.00 38.26 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.282570 CACGTGTGGCACAATGACC 59.717 57.895 23.90 8.57 44.16 4.02
4 5 2.020926 CACACGTGTGGCACAATGA 58.979 52.632 35.65 5.77 44.16 2.57
5 6 4.612757 CACACGTGTGGCACAATG 57.387 55.556 35.65 24.09 44.16 2.82
13 14 0.438445 CGATAAGTGCCACACGTGTG 59.562 55.000 36.13 36.13 45.23 3.82
14 15 0.669318 CCGATAAGTGCCACACGTGT 60.669 55.000 17.22 17.22 39.64 4.49
15 16 1.966493 GCCGATAAGTGCCACACGTG 61.966 60.000 15.48 15.48 39.64 4.49
16 17 1.740296 GCCGATAAGTGCCACACGT 60.740 57.895 0.00 0.00 39.64 4.49
17 18 2.798501 CGCCGATAAGTGCCACACG 61.799 63.158 0.00 0.00 39.64 4.49
18 19 1.693083 GACGCCGATAAGTGCCACAC 61.693 60.000 0.00 0.00 34.10 3.82
19 20 1.447140 GACGCCGATAAGTGCCACA 60.447 57.895 0.00 0.00 0.00 4.17
20 21 2.171725 GGACGCCGATAAGTGCCAC 61.172 63.158 0.00 0.00 0.00 5.01
21 22 1.895020 AAGGACGCCGATAAGTGCCA 61.895 55.000 0.00 0.00 0.00 4.92
22 23 1.152383 GAAGGACGCCGATAAGTGCC 61.152 60.000 0.00 0.00 0.00 5.01
23 24 0.179108 AGAAGGACGCCGATAAGTGC 60.179 55.000 0.00 0.00 0.00 4.40
24 25 2.295253 AAGAAGGACGCCGATAAGTG 57.705 50.000 0.00 0.00 0.00 3.16
25 26 3.329929 AAAAGAAGGACGCCGATAAGT 57.670 42.857 0.00 0.00 0.00 2.24
45 46 6.957020 ACCATTATTCATGTTGTCCCCTAAAA 59.043 34.615 0.00 0.00 0.00 1.52
49 50 4.608170 ACCATTATTCATGTTGTCCCCT 57.392 40.909 0.00 0.00 0.00 4.79
50 51 5.445964 ACTACCATTATTCATGTTGTCCCC 58.554 41.667 0.00 0.00 0.00 4.81
77 78 5.540337 TCTCTCCGGATAAGCTATCAACAAT 59.460 40.000 3.57 0.00 36.91 2.71
126 127 2.483877 TCTGCGTTGTTTGATCCATGTC 59.516 45.455 0.00 0.00 0.00 3.06
177 178 3.438360 CTGTTTATTTTGATCGGCCTGC 58.562 45.455 0.00 0.00 0.00 4.85
196 197 1.700186 GGATAAAGGAGTAGCCCCCTG 59.300 57.143 0.00 0.00 37.37 4.45
197 198 1.416161 GGGATAAAGGAGTAGCCCCCT 60.416 57.143 0.00 0.00 42.92 4.79
202 203 3.464907 GAAACGGGGATAAAGGAGTAGC 58.535 50.000 0.00 0.00 0.00 3.58
206 207 2.238898 ACAGGAAACGGGGATAAAGGAG 59.761 50.000 0.00 0.00 0.00 3.69
219 220 0.036388 TGATCCGGCTCACAGGAAAC 60.036 55.000 3.28 0.00 40.32 2.78
224 225 5.066375 TGAATTAAAATGATCCGGCTCACAG 59.934 40.000 10.77 0.00 0.00 3.66
228 229 5.757850 AGTGAATTAAAATGATCCGGCTC 57.242 39.130 0.00 0.00 0.00 4.70
253 254 9.238368 TCGATCAACTTGGGAATAACTATTTTT 57.762 29.630 0.00 0.00 0.00 1.94
273 274 5.810587 GGAACTTGTATACAAAGCTCGATCA 59.189 40.000 18.55 0.00 35.15 2.92
333 334 3.047796 GTCGAGCGTGTTCTTAGTTTCA 58.952 45.455 0.00 0.00 0.00 2.69
338 339 0.985549 GCTGTCGAGCGTGTTCTTAG 59.014 55.000 0.00 0.00 34.87 2.18
355 356 5.927954 TTAAACCGAGTGTTTATTTCGCT 57.072 34.783 0.00 0.00 46.11 4.93
409 410 6.736581 AGTGAGGGCTAGCTATTCAGATATA 58.263 40.000 15.72 0.00 0.00 0.86
410 411 5.588845 AGTGAGGGCTAGCTATTCAGATAT 58.411 41.667 15.72 0.99 0.00 1.63
416 417 5.993748 AGATTAGTGAGGGCTAGCTATTC 57.006 43.478 15.72 10.30 0.00 1.75
419 420 5.586155 AGTAGATTAGTGAGGGCTAGCTA 57.414 43.478 15.72 0.00 0.00 3.32
433 434 6.347402 GCTTGCGTGTTGAAAGAAGTAGATTA 60.347 38.462 0.00 0.00 34.85 1.75
440 441 2.473530 TGCTTGCGTGTTGAAAGAAG 57.526 45.000 0.00 0.00 34.85 2.85
443 444 2.046313 GACATGCTTGCGTGTTGAAAG 58.954 47.619 19.60 0.00 36.17 2.62
445 446 1.020437 TGACATGCTTGCGTGTTGAA 58.980 45.000 19.60 8.01 0.00 2.69
452 453 4.744136 ATAATGAGATGACATGCTTGCG 57.256 40.909 0.00 0.00 0.00 4.85
465 466 9.473007 TTTTCCCATACATGTTGAATAATGAGA 57.527 29.630 2.30 0.00 0.00 3.27
470 471 8.076910 AGCATTTTCCCATACATGTTGAATAA 57.923 30.769 2.30 1.69 0.00 1.40
471 472 7.341512 TGAGCATTTTCCCATACATGTTGAATA 59.658 33.333 2.30 0.00 0.00 1.75
479 480 3.956199 CAGGTGAGCATTTTCCCATACAT 59.044 43.478 0.00 0.00 0.00 2.29
483 1505 2.827921 GTTCAGGTGAGCATTTTCCCAT 59.172 45.455 0.00 0.00 0.00 4.00
486 1508 3.841643 CATGTTCAGGTGAGCATTTTCC 58.158 45.455 6.58 0.00 42.14 3.13
491 1513 1.171308 GTGCATGTTCAGGTGAGCAT 58.829 50.000 3.67 3.67 44.97 3.79
496 1518 0.528924 CATGGGTGCATGTTCAGGTG 59.471 55.000 0.00 0.00 0.00 4.00
508 1530 4.989279 AGCTTTTACTTATGCATGGGTG 57.011 40.909 10.16 0.00 0.00 4.61
509 1531 4.887655 GGTAGCTTTTACTTATGCATGGGT 59.112 41.667 10.16 10.31 0.00 4.51
511 1533 5.822519 TGAGGTAGCTTTTACTTATGCATGG 59.177 40.000 10.16 4.66 0.00 3.66
512 1534 6.925610 TGAGGTAGCTTTTACTTATGCATG 57.074 37.500 10.16 0.00 0.00 4.06
513 1535 6.884295 TGTTGAGGTAGCTTTTACTTATGCAT 59.116 34.615 3.79 3.79 0.00 3.96
516 1538 7.148255 TGCATGTTGAGGTAGCTTTTACTTATG 60.148 37.037 0.00 0.00 0.00 1.90
518 1540 6.234920 TGCATGTTGAGGTAGCTTTTACTTA 58.765 36.000 0.00 0.00 0.00 2.24
519 1541 5.070001 TGCATGTTGAGGTAGCTTTTACTT 58.930 37.500 0.00 0.00 0.00 2.24
521 1543 5.371115 TTGCATGTTGAGGTAGCTTTTAC 57.629 39.130 0.00 0.00 0.00 2.01
522 1544 6.588719 ATTTGCATGTTGAGGTAGCTTTTA 57.411 33.333 0.00 0.00 0.00 1.52
524 1546 6.567050 CATATTTGCATGTTGAGGTAGCTTT 58.433 36.000 0.00 0.00 0.00 3.51
525 1547 6.140303 CATATTTGCATGTTGAGGTAGCTT 57.860 37.500 0.00 0.00 0.00 3.74
526 1548 5.762825 CATATTTGCATGTTGAGGTAGCT 57.237 39.130 0.00 0.00 0.00 3.32
665 2112 7.880160 TTCTAATGAGATTTGGTTGTATGGG 57.120 36.000 0.00 0.00 0.00 4.00
711 2159 6.715344 TTAGATGAAACCACATACGTTGTC 57.285 37.500 0.00 0.00 36.00 3.18
742 2190 0.612174 CGGGTCAGTCTCAGGAGGAA 60.612 60.000 0.00 0.00 0.00 3.36
801 2326 2.785477 GACGACGAAGAAAAACGTGAGA 59.215 45.455 0.00 0.00 42.74 3.27
810 2335 4.782252 ATTTTTCACGACGACGAAGAAA 57.218 36.364 15.32 18.51 41.13 2.52
899 2556 1.238439 TTGCCTTGTAGAGTTGCAGC 58.762 50.000 0.00 0.00 32.88 5.25
920 2577 3.055675 TCGGTTCCTTGGATAAATGTCGT 60.056 43.478 0.00 0.00 0.00 4.34
970 2627 1.168407 TCCACAGAGCAAGCAACTGC 61.168 55.000 15.33 0.00 42.97 4.40
974 2631 2.489329 GCTTATTCCACAGAGCAAGCAA 59.511 45.455 0.00 0.00 35.29 3.91
1155 2812 1.956170 CATGCGGCCGTACATCTCC 60.956 63.158 28.70 7.68 0.00 3.71
1357 3016 9.557338 GTCATACACGATCTAGATACAATTACC 57.443 37.037 4.89 0.00 0.00 2.85
1384 3043 4.714308 AGAAGGAGAAGAGGTATTCACAGG 59.286 45.833 0.00 0.00 0.00 4.00
1410 3069 7.572523 TTCTGAAGAAACAATCTGACAACAT 57.427 32.000 0.00 0.00 38.79 2.71
1419 3078 7.144000 ACAGCAAGATTTCTGAAGAAACAATC 58.856 34.615 7.62 2.80 45.55 2.67
1434 3093 6.655078 AGTCCATTTTGTTACAGCAAGATT 57.345 33.333 0.00 0.00 0.00 2.40
1452 3111 1.069513 CCACTGTGGTTCGTAAGTCCA 59.930 52.381 18.76 0.00 39.22 4.02
1558 3217 8.859090 TGGAAAAATTACACTTCATCATTCAGT 58.141 29.630 0.00 0.00 0.00 3.41
1559 3218 9.132521 GTGGAAAAATTACACTTCATCATTCAG 57.867 33.333 0.00 0.00 32.58 3.02
1560 3219 8.859090 AGTGGAAAAATTACACTTCATCATTCA 58.141 29.630 2.11 0.00 42.38 2.57
1564 3223 9.126151 TGTTAGTGGAAAAATTACACTTCATCA 57.874 29.630 12.83 5.68 42.38 3.07
1565 3224 9.612620 CTGTTAGTGGAAAAATTACACTTCATC 57.387 33.333 12.83 3.57 42.38 2.92
1598 3257 2.025981 TGGCTCTACCGTACAAGGTCTA 60.026 50.000 0.00 0.00 44.68 2.59
1631 3291 3.334691 TCATTTCCCTGAATGACACGTC 58.665 45.455 0.00 0.00 40.20 4.34
1659 3319 2.887151 ATAAGCTGCCTGGTGAAACT 57.113 45.000 0.00 0.00 36.74 2.66
1683 3343 6.766944 CACTCCCCGTGACCTATACTATATAG 59.233 46.154 8.27 8.27 46.81 1.31
1684 3344 6.216251 ACACTCCCCGTGACCTATACTATATA 59.784 42.308 0.00 0.00 46.81 0.86
1685 3345 5.014966 ACACTCCCCGTGACCTATACTATAT 59.985 44.000 0.00 0.00 46.81 0.86
1686 3346 4.352001 ACACTCCCCGTGACCTATACTATA 59.648 45.833 0.00 0.00 46.81 1.31
1687 3347 3.139770 ACACTCCCCGTGACCTATACTAT 59.860 47.826 0.00 0.00 46.81 2.12
1688 3348 2.511218 ACACTCCCCGTGACCTATACTA 59.489 50.000 0.00 0.00 46.81 1.82
1689 3349 1.287146 ACACTCCCCGTGACCTATACT 59.713 52.381 0.00 0.00 46.81 2.12
1690 3350 1.772836 ACACTCCCCGTGACCTATAC 58.227 55.000 0.00 0.00 46.81 1.47
1691 3351 2.537633 AACACTCCCCGTGACCTATA 57.462 50.000 0.00 0.00 46.81 1.31
1692 3352 1.652947 AAACACTCCCCGTGACCTAT 58.347 50.000 0.00 0.00 46.81 2.57
1693 3353 1.426751 AAAACACTCCCCGTGACCTA 58.573 50.000 0.00 0.00 46.81 3.08
1694 3354 0.549469 AAAAACACTCCCCGTGACCT 59.451 50.000 0.00 0.00 46.81 3.85
1695 3355 3.105187 AAAAACACTCCCCGTGACC 57.895 52.632 0.00 0.00 46.81 4.02
1725 3385 9.897744 CTGTTGAAGATGTTCTAAGCAATAAAA 57.102 29.630 4.03 0.00 33.38 1.52
1726 3386 8.514594 CCTGTTGAAGATGTTCTAAGCAATAAA 58.485 33.333 4.03 0.00 33.38 1.40
1727 3387 7.362056 GCCTGTTGAAGATGTTCTAAGCAATAA 60.362 37.037 4.03 0.00 33.38 1.40
1728 3388 6.094048 GCCTGTTGAAGATGTTCTAAGCAATA 59.906 38.462 4.03 0.00 33.38 1.90
1729 3389 5.105997 GCCTGTTGAAGATGTTCTAAGCAAT 60.106 40.000 4.03 0.00 33.38 3.56
1730 3390 4.216257 GCCTGTTGAAGATGTTCTAAGCAA 59.784 41.667 4.03 0.00 33.38 3.91
1731 3391 3.753272 GCCTGTTGAAGATGTTCTAAGCA 59.247 43.478 4.03 0.00 33.38 3.91
1732 3392 3.181516 CGCCTGTTGAAGATGTTCTAAGC 60.182 47.826 4.03 0.55 33.38 3.09
1733 3393 3.181516 GCGCCTGTTGAAGATGTTCTAAG 60.182 47.826 0.00 0.00 33.38 2.18
1734 3394 2.742053 GCGCCTGTTGAAGATGTTCTAA 59.258 45.455 0.00 0.00 33.38 2.10
1735 3395 2.346803 GCGCCTGTTGAAGATGTTCTA 58.653 47.619 0.00 0.00 33.38 2.10
1736 3396 1.160137 GCGCCTGTTGAAGATGTTCT 58.840 50.000 0.00 0.00 33.38 3.01
1737 3397 0.179215 CGCGCCTGTTGAAGATGTTC 60.179 55.000 0.00 0.00 0.00 3.18
1738 3398 1.868997 CGCGCCTGTTGAAGATGTT 59.131 52.632 0.00 0.00 0.00 2.71
1739 3399 2.680913 GCGCGCCTGTTGAAGATGT 61.681 57.895 23.24 0.00 0.00 3.06
1740 3400 2.099062 GCGCGCCTGTTGAAGATG 59.901 61.111 23.24 0.00 0.00 2.90
1741 3401 1.965930 TTGCGCGCCTGTTGAAGAT 60.966 52.632 30.77 0.00 0.00 2.40
1742 3402 2.590291 TTGCGCGCCTGTTGAAGA 60.590 55.556 30.77 2.53 0.00 2.87
1743 3403 2.427410 GTTGCGCGCCTGTTGAAG 60.427 61.111 30.77 0.00 0.00 3.02
1744 3404 3.959975 GGTTGCGCGCCTGTTGAA 61.960 61.111 30.77 12.43 0.00 2.69
1764 3424 2.725452 TAAAATGGTTTTAGCGCGTCGC 60.725 45.455 8.43 14.88 42.41 5.19
1765 3425 1.958417 AAAATGGTTTTAGCGCGTCG 58.042 45.000 8.43 0.00 0.00 5.12
1766 3426 4.074466 AGTAAAATGGTTTTAGCGCGTC 57.926 40.909 8.43 0.00 35.91 5.19
1767 3427 5.565695 CATAGTAAAATGGTTTTAGCGCGT 58.434 37.500 8.43 0.00 35.91 6.01
1768 3428 4.436523 GCATAGTAAAATGGTTTTAGCGCG 59.563 41.667 0.00 0.00 35.91 6.86
1769 3429 4.738252 GGCATAGTAAAATGGTTTTAGCGC 59.262 41.667 0.00 0.00 35.91 5.92
1770 3430 4.967575 CGGCATAGTAAAATGGTTTTAGCG 59.032 41.667 0.00 0.00 35.91 4.26
1771 3431 6.126568 TCGGCATAGTAAAATGGTTTTAGC 57.873 37.500 0.00 0.00 35.91 3.09
1772 3432 8.973835 TTTTCGGCATAGTAAAATGGTTTTAG 57.026 30.769 0.00 0.00 35.91 1.85
1773 3433 9.930693 ATTTTTCGGCATAGTAAAATGGTTTTA 57.069 25.926 0.00 0.00 32.47 1.52
1774 3434 8.840833 ATTTTTCGGCATAGTAAAATGGTTTT 57.159 26.923 0.00 0.00 32.47 2.43
1775 3435 8.091449 TGATTTTTCGGCATAGTAAAATGGTTT 58.909 29.630 0.00 0.00 33.37 3.27
1776 3436 7.607250 TGATTTTTCGGCATAGTAAAATGGTT 58.393 30.769 0.00 0.00 33.37 3.67
1777 3437 7.164230 TGATTTTTCGGCATAGTAAAATGGT 57.836 32.000 0.00 0.00 33.37 3.55
1778 3438 7.543868 TGTTGATTTTTCGGCATAGTAAAATGG 59.456 33.333 0.00 0.00 33.37 3.16
1779 3439 8.459521 TGTTGATTTTTCGGCATAGTAAAATG 57.540 30.769 0.00 0.00 33.37 2.32
1780 3440 9.651913 ATTGTTGATTTTTCGGCATAGTAAAAT 57.348 25.926 0.00 0.00 35.04 1.82
1788 3448 9.651913 AACTATTTATTGTTGATTTTTCGGCAT 57.348 25.926 0.00 0.00 0.00 4.40
1789 3449 9.482627 AAACTATTTATTGTTGATTTTTCGGCA 57.517 25.926 0.00 0.00 0.00 5.69
1790 3450 9.739786 CAAACTATTTATTGTTGATTTTTCGGC 57.260 29.630 0.00 0.00 0.00 5.54
1866 3526 9.677567 GTATGTTTGATGTTGTATTGTTGAACT 57.322 29.630 0.00 0.00 0.00 3.01
1867 3527 9.457110 TGTATGTTTGATGTTGTATTGTTGAAC 57.543 29.630 0.00 0.00 0.00 3.18
1869 3529 9.457110 GTTGTATGTTTGATGTTGTATTGTTGA 57.543 29.630 0.00 0.00 0.00 3.18
1870 3530 9.242477 TGTTGTATGTTTGATGTTGTATTGTTG 57.758 29.630 0.00 0.00 0.00 3.33
1871 3531 9.979578 ATGTTGTATGTTTGATGTTGTATTGTT 57.020 25.926 0.00 0.00 0.00 2.83
1872 3532 9.624697 GATGTTGTATGTTTGATGTTGTATTGT 57.375 29.630 0.00 0.00 0.00 2.71
1873 3533 9.623350 TGATGTTGTATGTTTGATGTTGTATTG 57.377 29.630 0.00 0.00 0.00 1.90
1874 3534 9.624697 GTGATGTTGTATGTTTGATGTTGTATT 57.375 29.630 0.00 0.00 0.00 1.89
1875 3535 9.013229 AGTGATGTTGTATGTTTGATGTTGTAT 57.987 29.630 0.00 0.00 0.00 2.29
1876 3536 8.389779 AGTGATGTTGTATGTTTGATGTTGTA 57.610 30.769 0.00 0.00 0.00 2.41
1877 3537 7.275888 AGTGATGTTGTATGTTTGATGTTGT 57.724 32.000 0.00 0.00 0.00 3.32
1878 3538 8.506437 ACTAGTGATGTTGTATGTTTGATGTTG 58.494 33.333 0.00 0.00 0.00 3.33
1879 3539 8.621532 ACTAGTGATGTTGTATGTTTGATGTT 57.378 30.769 0.00 0.00 0.00 2.71
1880 3540 8.621532 AACTAGTGATGTTGTATGTTTGATGT 57.378 30.769 0.00 0.00 0.00 3.06
1881 3541 9.897744 AAAACTAGTGATGTTGTATGTTTGATG 57.102 29.630 0.00 0.00 0.00 3.07
1882 3542 9.897744 CAAAACTAGTGATGTTGTATGTTTGAT 57.102 29.630 0.00 0.00 0.00 2.57
1883 3543 8.898761 ACAAAACTAGTGATGTTGTATGTTTGA 58.101 29.630 12.69 0.00 30.88 2.69
1884 3544 9.169468 GACAAAACTAGTGATGTTGTATGTTTG 57.831 33.333 13.33 9.88 32.75 2.93
1885 3545 8.067784 CGACAAAACTAGTGATGTTGTATGTTT 58.932 33.333 13.33 0.00 32.75 2.83
1886 3546 7.307751 CCGACAAAACTAGTGATGTTGTATGTT 60.308 37.037 19.61 0.00 32.75 2.71
1887 3547 6.147164 CCGACAAAACTAGTGATGTTGTATGT 59.853 38.462 19.61 4.85 32.75 2.29
1888 3548 6.534059 CCGACAAAACTAGTGATGTTGTATG 58.466 40.000 19.61 12.85 32.75 2.39
1889 3549 5.121768 GCCGACAAAACTAGTGATGTTGTAT 59.878 40.000 19.61 0.10 32.75 2.29
1890 3550 4.449743 GCCGACAAAACTAGTGATGTTGTA 59.550 41.667 19.61 0.00 32.75 2.41
1891 3551 3.250040 GCCGACAAAACTAGTGATGTTGT 59.750 43.478 19.61 16.05 35.20 3.32
1892 3552 3.364964 GGCCGACAAAACTAGTGATGTTG 60.365 47.826 16.46 16.46 0.00 3.33
1893 3553 2.812011 GGCCGACAAAACTAGTGATGTT 59.188 45.455 13.33 0.00 0.00 2.71
1894 3554 2.224426 TGGCCGACAAAACTAGTGATGT 60.224 45.455 12.28 12.28 0.00 3.06
1895 3555 2.422597 TGGCCGACAAAACTAGTGATG 58.577 47.619 0.00 0.96 0.00 3.07
1896 3556 2.851263 TGGCCGACAAAACTAGTGAT 57.149 45.000 0.00 0.00 0.00 3.06
1897 3557 2.851263 ATGGCCGACAAAACTAGTGA 57.149 45.000 0.00 0.00 0.00 3.41
1898 3558 2.161609 GGAATGGCCGACAAAACTAGTG 59.838 50.000 0.00 0.00 0.00 2.74
1899 3559 2.224670 TGGAATGGCCGACAAAACTAGT 60.225 45.455 0.00 0.00 40.66 2.57
1900 3560 2.432444 TGGAATGGCCGACAAAACTAG 58.568 47.619 0.00 0.00 40.66 2.57
1901 3561 2.570415 TGGAATGGCCGACAAAACTA 57.430 45.000 0.00 0.00 40.66 2.24
1902 3562 1.545582 CATGGAATGGCCGACAAAACT 59.454 47.619 0.00 0.00 41.79 2.66
1903 3563 1.994916 CATGGAATGGCCGACAAAAC 58.005 50.000 0.00 0.00 41.79 2.43
1904 3564 0.246086 GCATGGAATGGCCGACAAAA 59.754 50.000 0.00 0.00 46.86 2.44
1905 3565 1.889454 GCATGGAATGGCCGACAAA 59.111 52.632 0.00 0.00 46.86 2.83
1906 3566 3.602103 GCATGGAATGGCCGACAA 58.398 55.556 0.00 0.00 46.86 3.18
1913 3573 1.000739 AGTGGTGGGCATGGAATGG 59.999 57.895 0.00 0.00 46.86 3.16
1915 3575 1.217057 AGGAGTGGTGGGCATGGAAT 61.217 55.000 0.00 0.00 0.00 3.01
1916 3576 1.852157 AGGAGTGGTGGGCATGGAA 60.852 57.895 0.00 0.00 0.00 3.53
1917 3577 2.204136 AGGAGTGGTGGGCATGGA 60.204 61.111 0.00 0.00 0.00 3.41
1918 3578 2.273449 GAGGAGTGGTGGGCATGG 59.727 66.667 0.00 0.00 0.00 3.66
1919 3579 1.976132 ATCGAGGAGTGGTGGGCATG 61.976 60.000 0.00 0.00 0.00 4.06
1920 3580 1.274703 AATCGAGGAGTGGTGGGCAT 61.275 55.000 0.00 0.00 0.00 4.40
1921 3581 0.616395 TAATCGAGGAGTGGTGGGCA 60.616 55.000 0.00 0.00 0.00 5.36
1922 3582 0.105039 CTAATCGAGGAGTGGTGGGC 59.895 60.000 0.00 0.00 0.00 5.36
1923 3583 1.776662 TCTAATCGAGGAGTGGTGGG 58.223 55.000 0.00 0.00 0.00 4.61
1924 3584 2.297597 GGATCTAATCGAGGAGTGGTGG 59.702 54.545 0.00 0.00 0.00 4.61
1925 3585 3.226777 AGGATCTAATCGAGGAGTGGTG 58.773 50.000 0.00 0.00 0.00 4.17
1926 3586 3.603965 AGGATCTAATCGAGGAGTGGT 57.396 47.619 0.00 0.00 0.00 4.16
1927 3587 4.946478 AAAGGATCTAATCGAGGAGTGG 57.054 45.455 0.00 0.00 0.00 4.00
1928 3588 5.907207 TCAAAAGGATCTAATCGAGGAGTG 58.093 41.667 0.00 0.00 0.00 3.51
1929 3589 6.381420 TCTTCAAAAGGATCTAATCGAGGAGT 59.619 38.462 0.00 0.00 0.00 3.85
1930 3590 6.810911 TCTTCAAAAGGATCTAATCGAGGAG 58.189 40.000 0.00 0.00 0.00 3.69
1931 3591 6.684111 GCTCTTCAAAAGGATCTAATCGAGGA 60.684 42.308 0.00 0.00 0.00 3.71
1932 3592 5.465056 GCTCTTCAAAAGGATCTAATCGAGG 59.535 44.000 0.00 0.00 0.00 4.63
1933 3593 6.045318 TGCTCTTCAAAAGGATCTAATCGAG 58.955 40.000 0.00 0.00 0.00 4.04
1934 3594 5.977635 TGCTCTTCAAAAGGATCTAATCGA 58.022 37.500 0.00 0.00 0.00 3.59
1935 3595 6.481313 TGATGCTCTTCAAAAGGATCTAATCG 59.519 38.462 6.26 0.00 40.91 3.34
1936 3596 7.798596 TGATGCTCTTCAAAAGGATCTAATC 57.201 36.000 6.26 0.00 40.91 1.75
1937 3597 7.255520 GCATGATGCTCTTCAAAAGGATCTAAT 60.256 37.037 10.72 0.00 40.91 1.73
1938 3598 6.039047 GCATGATGCTCTTCAAAAGGATCTAA 59.961 38.462 10.72 0.00 40.91 2.10
1939 3599 5.530171 GCATGATGCTCTTCAAAAGGATCTA 59.470 40.000 10.72 0.00 40.91 1.98
1940 3600 4.338682 GCATGATGCTCTTCAAAAGGATCT 59.661 41.667 10.72 0.00 40.91 2.75
1941 3601 4.608951 GCATGATGCTCTTCAAAAGGATC 58.391 43.478 10.72 0.00 40.96 3.36
1942 3602 3.066342 CGCATGATGCTCTTCAAAAGGAT 59.934 43.478 16.17 0.00 42.25 3.24
1943 3603 2.421073 CGCATGATGCTCTTCAAAAGGA 59.579 45.455 16.17 0.00 42.25 3.36
1944 3604 2.163010 ACGCATGATGCTCTTCAAAAGG 59.837 45.455 16.17 0.00 42.25 3.11
1945 3605 3.482722 ACGCATGATGCTCTTCAAAAG 57.517 42.857 16.17 0.00 42.25 2.27
1946 3606 3.921119 AACGCATGATGCTCTTCAAAA 57.079 38.095 16.17 0.00 42.25 2.44
1947 3607 3.921119 AAACGCATGATGCTCTTCAAA 57.079 38.095 16.17 0.00 42.25 2.69
1948 3608 3.567530 CAAAACGCATGATGCTCTTCAA 58.432 40.909 16.17 0.00 42.25 2.69
1949 3609 2.095110 CCAAAACGCATGATGCTCTTCA 60.095 45.455 16.17 0.00 42.25 3.02
1950 3610 2.523015 CCAAAACGCATGATGCTCTTC 58.477 47.619 16.17 0.00 42.25 2.87
1951 3611 1.403249 GCCAAAACGCATGATGCTCTT 60.403 47.619 16.17 5.48 42.25 2.85
1952 3612 0.171903 GCCAAAACGCATGATGCTCT 59.828 50.000 16.17 0.00 42.25 4.09
1953 3613 0.109179 TGCCAAAACGCATGATGCTC 60.109 50.000 16.17 0.00 42.25 4.26
1954 3614 0.388907 GTGCCAAAACGCATGATGCT 60.389 50.000 16.17 0.00 42.25 3.79
1955 3615 1.676438 CGTGCCAAAACGCATGATGC 61.676 55.000 7.49 7.49 46.68 3.91
1956 3616 0.387112 ACGTGCCAAAACGCATGATG 60.387 50.000 9.61 0.00 46.68 3.07
1957 3617 0.109781 GACGTGCCAAAACGCATGAT 60.110 50.000 9.61 0.00 46.68 2.45
1958 3618 1.281353 GACGTGCCAAAACGCATGA 59.719 52.632 9.61 0.00 46.68 3.07
1964 3624 1.001745 GCCATTCGACGTGCCAAAAC 61.002 55.000 0.00 0.00 0.00 2.43
1965 3625 1.284408 GCCATTCGACGTGCCAAAA 59.716 52.632 0.00 0.00 0.00 2.44
1966 3626 1.240641 ATGCCATTCGACGTGCCAAA 61.241 50.000 0.00 0.00 0.00 3.28
1967 3627 1.673993 ATGCCATTCGACGTGCCAA 60.674 52.632 0.00 0.00 0.00 4.52
1968 3628 2.046411 ATGCCATTCGACGTGCCA 60.046 55.556 0.00 0.00 0.00 4.92
1969 3629 1.439353 ATCATGCCATTCGACGTGCC 61.439 55.000 0.00 0.00 0.00 5.01
1970 3630 1.193203 CTATCATGCCATTCGACGTGC 59.807 52.381 0.00 0.00 0.00 5.34
1971 3631 1.794701 CCTATCATGCCATTCGACGTG 59.205 52.381 0.00 0.00 0.00 4.49
1972 3632 1.686587 TCCTATCATGCCATTCGACGT 59.313 47.619 0.00 0.00 0.00 4.34
1973 3633 2.332104 CTCCTATCATGCCATTCGACG 58.668 52.381 0.00 0.00 0.00 5.12
1974 3634 2.693069 CCTCCTATCATGCCATTCGAC 58.307 52.381 0.00 0.00 0.00 4.20
1975 3635 1.002430 GCCTCCTATCATGCCATTCGA 59.998 52.381 0.00 0.00 0.00 3.71
1976 3636 1.271001 TGCCTCCTATCATGCCATTCG 60.271 52.381 0.00 0.00 0.00 3.34
1977 3637 2.555757 GTTGCCTCCTATCATGCCATTC 59.444 50.000 0.00 0.00 0.00 2.67
1978 3638 2.091720 TGTTGCCTCCTATCATGCCATT 60.092 45.455 0.00 0.00 0.00 3.16
1979 3639 1.496001 TGTTGCCTCCTATCATGCCAT 59.504 47.619 0.00 0.00 0.00 4.40
1980 3640 0.918258 TGTTGCCTCCTATCATGCCA 59.082 50.000 0.00 0.00 0.00 4.92
1981 3641 2.057137 TTGTTGCCTCCTATCATGCC 57.943 50.000 0.00 0.00 0.00 4.40
1982 3642 3.633525 TGATTTGTTGCCTCCTATCATGC 59.366 43.478 0.00 0.00 0.00 4.06
1983 3643 4.277672 CCTGATTTGTTGCCTCCTATCATG 59.722 45.833 0.00 0.00 0.00 3.07
1984 3644 4.467769 CCTGATTTGTTGCCTCCTATCAT 58.532 43.478 0.00 0.00 0.00 2.45
1985 3645 3.889815 CCTGATTTGTTGCCTCCTATCA 58.110 45.455 0.00 0.00 0.00 2.15
1986 3646 2.620585 GCCTGATTTGTTGCCTCCTATC 59.379 50.000 0.00 0.00 0.00 2.08
1987 3647 2.659428 GCCTGATTTGTTGCCTCCTAT 58.341 47.619 0.00 0.00 0.00 2.57
1988 3648 1.340991 GGCCTGATTTGTTGCCTCCTA 60.341 52.381 0.00 0.00 40.77 2.94
1989 3649 0.613012 GGCCTGATTTGTTGCCTCCT 60.613 55.000 0.00 0.00 40.77 3.69
1990 3650 0.899717 TGGCCTGATTTGTTGCCTCC 60.900 55.000 3.32 0.00 44.32 4.30
1991 3651 0.244721 GTGGCCTGATTTGTTGCCTC 59.755 55.000 3.32 0.00 44.32 4.70
1992 3652 1.187567 GGTGGCCTGATTTGTTGCCT 61.188 55.000 3.32 0.00 44.32 4.75
1993 3653 1.293179 GGTGGCCTGATTTGTTGCC 59.707 57.895 3.32 0.00 44.27 4.52
1994 3654 1.187567 AGGGTGGCCTGATTTGTTGC 61.188 55.000 3.32 0.00 0.00 4.17
1995 3655 0.890683 GAGGGTGGCCTGATTTGTTG 59.109 55.000 3.32 0.00 0.00 3.33
1996 3656 0.609131 CGAGGGTGGCCTGATTTGTT 60.609 55.000 3.32 0.00 0.00 2.83
1997 3657 1.002134 CGAGGGTGGCCTGATTTGT 60.002 57.895 3.32 0.00 0.00 2.83
1998 3658 2.409870 GCGAGGGTGGCCTGATTTG 61.410 63.158 3.32 0.00 0.00 2.32
1999 3659 2.044946 GCGAGGGTGGCCTGATTT 60.045 61.111 3.32 0.00 0.00 2.17
2000 3660 3.329889 TGCGAGGGTGGCCTGATT 61.330 61.111 3.32 0.00 0.00 2.57
2001 3661 3.790437 CTGCGAGGGTGGCCTGAT 61.790 66.667 3.32 0.00 0.00 2.90
2016 3676 4.154347 GAGTGCGGAGGAGGGCTG 62.154 72.222 0.00 0.00 0.00 4.85
2028 3688 2.103042 GGATGTCCTGTGCGAGTGC 61.103 63.158 0.00 0.00 43.20 4.40
2029 3689 1.448540 GGGATGTCCTGTGCGAGTG 60.449 63.158 0.00 0.00 35.95 3.51
2030 3690 1.480212 TTGGGATGTCCTGTGCGAGT 61.480 55.000 0.00 0.00 36.20 4.18
2031 3691 0.742281 CTTGGGATGTCCTGTGCGAG 60.742 60.000 0.00 0.00 36.20 5.03
2032 3692 1.191489 TCTTGGGATGTCCTGTGCGA 61.191 55.000 0.00 0.00 36.20 5.10
2033 3693 0.742281 CTCTTGGGATGTCCTGTGCG 60.742 60.000 0.00 0.00 36.20 5.34
2034 3694 1.028868 GCTCTTGGGATGTCCTGTGC 61.029 60.000 0.00 0.13 36.20 4.57
2035 3695 0.617413 AGCTCTTGGGATGTCCTGTG 59.383 55.000 0.00 0.00 36.20 3.66
2036 3696 0.908198 GAGCTCTTGGGATGTCCTGT 59.092 55.000 6.43 0.00 36.20 4.00
2037 3697 0.907486 TGAGCTCTTGGGATGTCCTG 59.093 55.000 16.19 0.00 36.20 3.86
2038 3698 1.890552 ATGAGCTCTTGGGATGTCCT 58.109 50.000 16.19 0.00 36.20 3.85
2039 3699 2.703007 AGTATGAGCTCTTGGGATGTCC 59.297 50.000 16.19 0.00 0.00 4.02
2040 3700 3.386078 TCAGTATGAGCTCTTGGGATGTC 59.614 47.826 16.19 0.00 42.56 3.06
2041 3701 3.378512 TCAGTATGAGCTCTTGGGATGT 58.621 45.455 16.19 0.00 42.56 3.06
2057 3717 9.475620 TGGACAAGATTTAGACTATTCTCAGTA 57.524 33.333 0.00 0.00 32.75 2.74
2058 3718 8.254508 GTGGACAAGATTTAGACTATTCTCAGT 58.745 37.037 0.00 0.78 32.75 3.41
2059 3719 8.253810 TGTGGACAAGATTTAGACTATTCTCAG 58.746 37.037 0.00 0.00 32.75 3.35
2060 3720 8.035394 GTGTGGACAAGATTTAGACTATTCTCA 58.965 37.037 0.00 0.00 32.75 3.27
2061 3721 8.254508 AGTGTGGACAAGATTTAGACTATTCTC 58.745 37.037 0.00 0.00 32.75 2.87
2062 3722 8.140112 AGTGTGGACAAGATTTAGACTATTCT 57.860 34.615 0.00 0.00 35.66 2.40
2063 3723 8.035394 TGAGTGTGGACAAGATTTAGACTATTC 58.965 37.037 0.00 0.00 0.00 1.75
2064 3724 7.907389 TGAGTGTGGACAAGATTTAGACTATT 58.093 34.615 0.00 0.00 0.00 1.73
2065 3725 7.482169 TGAGTGTGGACAAGATTTAGACTAT 57.518 36.000 0.00 0.00 0.00 2.12
2066 3726 6.911250 TGAGTGTGGACAAGATTTAGACTA 57.089 37.500 0.00 0.00 0.00 2.59
2067 3727 5.808366 TGAGTGTGGACAAGATTTAGACT 57.192 39.130 0.00 0.00 0.00 3.24
2068 3728 6.876257 AGAATGAGTGTGGACAAGATTTAGAC 59.124 38.462 0.00 0.00 0.00 2.59
2069 3729 7.009179 AGAATGAGTGTGGACAAGATTTAGA 57.991 36.000 0.00 0.00 0.00 2.10
2070 3730 6.035435 CGAGAATGAGTGTGGACAAGATTTAG 59.965 42.308 0.00 0.00 0.00 1.85
2071 3731 5.869344 CGAGAATGAGTGTGGACAAGATTTA 59.131 40.000 0.00 0.00 0.00 1.40
2072 3732 4.692625 CGAGAATGAGTGTGGACAAGATTT 59.307 41.667 0.00 0.00 0.00 2.17
2073 3733 4.021104 TCGAGAATGAGTGTGGACAAGATT 60.021 41.667 0.00 0.00 0.00 2.40
2074 3734 3.511540 TCGAGAATGAGTGTGGACAAGAT 59.488 43.478 0.00 0.00 0.00 2.40
2075 3735 2.890945 TCGAGAATGAGTGTGGACAAGA 59.109 45.455 0.00 0.00 0.00 3.02
2076 3736 3.303881 TCGAGAATGAGTGTGGACAAG 57.696 47.619 0.00 0.00 0.00 3.16
2077 3737 3.258123 TCATCGAGAATGAGTGTGGACAA 59.742 43.478 0.00 0.00 39.52 3.18
2078 3738 2.825532 TCATCGAGAATGAGTGTGGACA 59.174 45.455 0.00 0.00 39.52 4.02
2079 3739 3.510388 TCATCGAGAATGAGTGTGGAC 57.490 47.619 0.00 0.00 39.52 4.02
2081 3741 8.592471 TACACGATCATCGAGAATGAGTGTGG 62.592 46.154 15.60 6.42 45.81 4.17
2082 3742 5.730568 TACACGATCATCGAGAATGAGTGTG 60.731 44.000 15.60 15.86 45.81 3.82
2088 3748 4.445385 TGCATTACACGATCATCGAGAATG 59.555 41.667 15.60 18.43 43.74 2.67
2089 3749 4.620982 TGCATTACACGATCATCGAGAAT 58.379 39.130 15.60 7.00 43.74 2.40
2090 3750 4.040445 TGCATTACACGATCATCGAGAA 57.960 40.909 15.60 4.80 43.74 2.87
2091 3751 3.708563 TGCATTACACGATCATCGAGA 57.291 42.857 15.60 0.00 43.74 4.04
2092 3752 3.983344 TCATGCATTACACGATCATCGAG 59.017 43.478 15.60 8.77 43.74 4.04
2093 3753 3.976169 TCATGCATTACACGATCATCGA 58.024 40.909 15.60 0.00 43.74 3.59
2094 3754 4.879067 GATCATGCATTACACGATCATCG 58.121 43.478 15.50 5.22 45.30 3.84
2098 3758 4.766007 GTGTGATCATGCATTACACGATC 58.234 43.478 14.15 14.15 45.99 3.69
2099 3759 4.801147 GTGTGATCATGCATTACACGAT 57.199 40.909 17.08 8.96 40.91 3.73
2103 3763 3.181508 CGCTTGTGTGATCATGCATTACA 60.182 43.478 0.00 0.00 38.03 2.41
2104 3764 3.181507 ACGCTTGTGTGATCATGCATTAC 60.182 43.478 0.00 0.00 38.03 1.89
2105 3765 3.009026 ACGCTTGTGTGATCATGCATTA 58.991 40.909 0.00 0.00 38.03 1.90
2106 3766 1.814394 ACGCTTGTGTGATCATGCATT 59.186 42.857 0.00 0.00 38.03 3.56
2107 3767 1.456296 ACGCTTGTGTGATCATGCAT 58.544 45.000 0.00 0.00 38.03 3.96
2108 3768 1.197492 GAACGCTTGTGTGATCATGCA 59.803 47.619 0.00 0.00 38.03 3.96
2109 3769 1.197492 TGAACGCTTGTGTGATCATGC 59.803 47.619 0.00 0.00 31.97 4.06
2110 3770 3.752412 ATGAACGCTTGTGTGATCATG 57.248 42.857 0.00 0.00 42.12 3.07
2111 3771 3.337358 TCATGAACGCTTGTGTGATCAT 58.663 40.909 0.00 0.00 43.68 2.45
2112 3772 2.765122 TCATGAACGCTTGTGTGATCA 58.235 42.857 0.00 0.00 39.24 2.92
2113 3773 3.125829 ACATCATGAACGCTTGTGTGATC 59.874 43.478 0.00 0.00 0.00 2.92
2114 3774 3.076621 ACATCATGAACGCTTGTGTGAT 58.923 40.909 0.00 0.00 0.00 3.06
2115 3775 2.493035 ACATCATGAACGCTTGTGTGA 58.507 42.857 0.00 0.00 0.00 3.58
2116 3776 2.975410 ACATCATGAACGCTTGTGTG 57.025 45.000 0.00 0.00 0.00 3.82
2117 3777 2.742053 GGTACATCATGAACGCTTGTGT 59.258 45.455 0.00 0.00 0.00 3.72
2118 3778 2.741517 TGGTACATCATGAACGCTTGTG 59.258 45.455 0.00 0.00 0.00 3.33
2119 3779 3.052455 TGGTACATCATGAACGCTTGT 57.948 42.857 0.00 1.32 0.00 3.16
2120 3780 4.406069 CTTTGGTACATCATGAACGCTTG 58.594 43.478 0.00 0.00 39.30 4.01
2121 3781 3.440173 CCTTTGGTACATCATGAACGCTT 59.560 43.478 0.00 0.00 39.30 4.68
2122 3782 3.009723 CCTTTGGTACATCATGAACGCT 58.990 45.455 0.00 0.00 39.30 5.07
2123 3783 3.006940 TCCTTTGGTACATCATGAACGC 58.993 45.455 0.00 0.00 39.30 4.84
2124 3784 5.118990 AGATCCTTTGGTACATCATGAACG 58.881 41.667 0.00 0.00 39.30 3.95
2125 3785 7.396540 AAAGATCCTTTGGTACATCATGAAC 57.603 36.000 0.00 0.00 39.30 3.18
2126 3786 9.527157 TTAAAAGATCCTTTGGTACATCATGAA 57.473 29.630 0.00 0.00 39.30 2.57
2127 3787 9.699410 ATTAAAAGATCCTTTGGTACATCATGA 57.301 29.630 0.00 0.00 39.30 3.07
2128 3788 9.956720 GATTAAAAGATCCTTTGGTACATCATG 57.043 33.333 0.00 0.00 39.30 3.07
2129 3789 9.136323 GGATTAAAAGATCCTTTGGTACATCAT 57.864 33.333 0.00 0.00 41.96 2.45
2130 3790 7.559897 GGGATTAAAAGATCCTTTGGTACATCA 59.440 37.037 0.00 0.00 44.17 3.07
2131 3791 7.559897 TGGGATTAAAAGATCCTTTGGTACATC 59.440 37.037 0.00 0.00 44.17 3.06
2132 3792 7.418378 TGGGATTAAAAGATCCTTTGGTACAT 58.582 34.615 0.00 0.00 44.17 2.29
2133 3793 6.795590 TGGGATTAAAAGATCCTTTGGTACA 58.204 36.000 0.00 0.00 44.17 2.90
2134 3794 7.712204 TTGGGATTAAAAGATCCTTTGGTAC 57.288 36.000 0.00 0.00 44.17 3.34
2135 3795 8.728596 TTTTGGGATTAAAAGATCCTTTGGTA 57.271 30.769 0.00 0.00 44.17 3.25
2136 3796 7.625498 TTTTGGGATTAAAAGATCCTTTGGT 57.375 32.000 0.00 0.00 44.17 3.67
2137 3797 8.542926 AGATTTTGGGATTAAAAGATCCTTTGG 58.457 33.333 0.00 0.00 44.17 3.28
2140 3800 8.918116 GCTAGATTTTGGGATTAAAAGATCCTT 58.082 33.333 0.00 0.00 44.17 3.36
2141 3801 7.507277 GGCTAGATTTTGGGATTAAAAGATCCT 59.493 37.037 0.00 0.00 44.17 3.24
2142 3802 7.522236 CGGCTAGATTTTGGGATTAAAAGATCC 60.522 40.741 0.00 0.00 44.03 3.36
2143 3803 7.363431 CGGCTAGATTTTGGGATTAAAAGATC 58.637 38.462 0.00 0.00 33.49 2.75
2144 3804 6.265422 CCGGCTAGATTTTGGGATTAAAAGAT 59.735 38.462 0.00 0.00 33.49 2.40
2145 3805 5.592688 CCGGCTAGATTTTGGGATTAAAAGA 59.407 40.000 0.00 0.00 33.49 2.52
2146 3806 5.359860 ACCGGCTAGATTTTGGGATTAAAAG 59.640 40.000 0.00 0.00 33.49 2.27
2147 3807 5.265989 ACCGGCTAGATTTTGGGATTAAAA 58.734 37.500 0.00 0.00 34.39 1.52
2148 3808 4.862371 ACCGGCTAGATTTTGGGATTAAA 58.138 39.130 0.00 0.00 0.00 1.52
2149 3809 4.457466 GACCGGCTAGATTTTGGGATTAA 58.543 43.478 0.00 0.00 0.00 1.40
2150 3810 3.181448 GGACCGGCTAGATTTTGGGATTA 60.181 47.826 0.00 0.00 0.00 1.75
2151 3811 2.422945 GGACCGGCTAGATTTTGGGATT 60.423 50.000 0.00 0.00 0.00 3.01
2152 3812 1.143073 GGACCGGCTAGATTTTGGGAT 59.857 52.381 0.00 0.00 0.00 3.85
2153 3813 0.544697 GGACCGGCTAGATTTTGGGA 59.455 55.000 0.00 0.00 0.00 4.37
2154 3814 0.546598 AGGACCGGCTAGATTTTGGG 59.453 55.000 0.00 0.00 0.00 4.12
2155 3815 1.486726 AGAGGACCGGCTAGATTTTGG 59.513 52.381 0.00 0.00 0.00 3.28
2156 3816 2.168521 TGAGAGGACCGGCTAGATTTTG 59.831 50.000 0.00 0.00 0.00 2.44
2157 3817 2.168728 GTGAGAGGACCGGCTAGATTTT 59.831 50.000 0.00 0.00 0.00 1.82
2158 3818 1.757699 GTGAGAGGACCGGCTAGATTT 59.242 52.381 0.00 0.00 0.00 2.17
2159 3819 1.342076 TGTGAGAGGACCGGCTAGATT 60.342 52.381 0.00 0.00 0.00 2.40
2160 3820 0.259065 TGTGAGAGGACCGGCTAGAT 59.741 55.000 0.00 0.00 0.00 1.98
2161 3821 0.039180 TTGTGAGAGGACCGGCTAGA 59.961 55.000 0.00 0.00 0.00 2.43
2162 3822 1.115467 ATTGTGAGAGGACCGGCTAG 58.885 55.000 0.00 0.00 0.00 3.42
2163 3823 2.307768 CTATTGTGAGAGGACCGGCTA 58.692 52.381 0.00 0.00 0.00 3.93
2164 3824 1.115467 CTATTGTGAGAGGACCGGCT 58.885 55.000 0.00 0.00 0.00 5.52
2165 3825 0.530870 GCTATTGTGAGAGGACCGGC 60.531 60.000 0.00 0.00 0.00 6.13
2166 3826 0.824109 TGCTATTGTGAGAGGACCGG 59.176 55.000 0.00 0.00 0.00 5.28
2167 3827 2.672961 TTGCTATTGTGAGAGGACCG 57.327 50.000 0.00 0.00 0.00 4.79
2168 3828 4.096984 CCAATTTGCTATTGTGAGAGGACC 59.903 45.833 10.03 0.00 0.00 4.46
2169 3829 4.096984 CCCAATTTGCTATTGTGAGAGGAC 59.903 45.833 10.03 0.00 0.00 3.85
2170 3830 4.018506 TCCCAATTTGCTATTGTGAGAGGA 60.019 41.667 10.03 6.99 0.00 3.71
2171 3831 4.272489 TCCCAATTTGCTATTGTGAGAGG 58.728 43.478 10.03 5.30 0.00 3.69
2172 3832 5.735354 GCATCCCAATTTGCTATTGTGAGAG 60.735 44.000 10.03 4.52 35.95 3.20
2173 3833 4.098349 GCATCCCAATTTGCTATTGTGAGA 59.902 41.667 10.03 5.73 35.95 3.27
2174 3834 4.365723 GCATCCCAATTTGCTATTGTGAG 58.634 43.478 10.03 1.73 35.95 3.51
2175 3835 3.132646 GGCATCCCAATTTGCTATTGTGA 59.867 43.478 10.03 5.83 38.88 3.58
2176 3836 3.118702 TGGCATCCCAATTTGCTATTGTG 60.119 43.478 10.03 4.90 38.46 3.33
2177 3837 3.106054 TGGCATCCCAATTTGCTATTGT 58.894 40.909 10.03 0.00 38.46 2.71
2178 3838 3.823281 TGGCATCCCAATTTGCTATTG 57.177 42.857 0.22 5.47 38.46 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.