Multiple sequence alignment - TraesCS4D01G289800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G289800 chr4D 100.000 3811 0 0 955 4765 460948982 460952792 0.000000e+00 7038.0
1 TraesCS4D01G289800 chr4D 100.000 325 0 0 1 325 460948028 460948352 6.820000e-168 601.0
2 TraesCS4D01G289800 chr4B 95.697 1557 52 8 2212 3762 576108831 576110378 0.000000e+00 2490.0
3 TraesCS4D01G289800 chr4B 95.455 462 17 1 955 1416 576107138 576107595 0.000000e+00 734.0
4 TraesCS4D01G289800 chr4B 86.856 563 49 17 1595 2139 576107709 576108264 1.470000e-169 606.0
5 TraesCS4D01G289800 chr4B 94.538 238 10 2 89 325 576106862 576107097 9.750000e-97 364.0
6 TraesCS4D01G289800 chr4B 90.710 183 12 4 3807 3985 576110385 576110566 6.160000e-59 239.0
7 TraesCS4D01G289800 chr4B 88.950 181 13 4 4062 4238 576110815 576110992 2.890000e-52 217.0
8 TraesCS4D01G289800 chr4B 92.857 112 8 0 4297 4408 576111021 576111132 3.820000e-36 163.0
9 TraesCS4D01G289800 chr4B 94.737 76 4 0 4469 4544 576111272 576111347 8.380000e-23 119.0
10 TraesCS4D01G289800 chr4B 90.000 60 5 1 1532 1590 576107607 576107666 5.110000e-10 76.8
11 TraesCS4D01G289800 chr4A 96.542 1446 41 3 2236 3681 7464330 7462894 0.000000e+00 2385.0
12 TraesCS4D01G289800 chr4A 95.050 1212 48 8 955 2162 7465744 7464541 0.000000e+00 1895.0
13 TraesCS4D01G289800 chr4A 92.692 260 14 1 71 325 7466057 7465798 2.090000e-98 370.0
14 TraesCS4D01G289800 chr4A 90.783 217 9 4 3807 4014 7462851 7462637 3.630000e-71 279.0
15 TraesCS4D01G289800 chrUn 79.460 667 108 19 2365 3019 97735438 97736087 3.380000e-121 446.0
16 TraesCS4D01G289800 chrUn 83.577 274 31 11 1059 1329 97734594 97734856 1.320000e-60 244.0
17 TraesCS4D01G289800 chr6A 78.779 655 112 16 2365 3007 53114601 53115240 9.540000e-112 414.0
18 TraesCS4D01G289800 chr6A 81.208 298 34 17 1059 1335 53113654 53113950 2.230000e-53 220.0
19 TraesCS4D01G289800 chr6A 98.630 73 0 1 1 73 446795881 446795952 1.390000e-25 128.0
20 TraesCS4D01G289800 chr6A 94.545 55 1 2 3760 3813 555730793 555730740 3.060000e-12 84.2
21 TraesCS4D01G289800 chr6B 78.779 655 98 25 2365 3005 109142374 109143001 7.430000e-108 401.0
22 TraesCS4D01G289800 chr6B 81.164 292 33 20 1059 1335 109141600 109141884 1.040000e-51 215.0
23 TraesCS4D01G289800 chr7A 98.630 73 0 1 1 73 621553757 621553686 1.390000e-25 128.0
24 TraesCS4D01G289800 chr5A 100.000 51 0 0 3760 3810 3295538 3295588 1.410000e-15 95.3
25 TraesCS4D01G289800 chr3D 98.077 52 0 1 3763 3813 477571167 477571218 6.570000e-14 89.8
26 TraesCS4D01G289800 chr3D 93.220 59 1 3 3756 3813 326567613 326567557 3.060000e-12 84.2
27 TraesCS4D01G289800 chr3D 93.103 58 3 1 3759 3816 583871829 583871885 3.060000e-12 84.2
28 TraesCS4D01G289800 chr3A 93.220 59 3 1 3760 3818 50749086 50749143 8.500000e-13 86.1
29 TraesCS4D01G289800 chr3A 91.935 62 3 2 3757 3817 231001888 231001828 8.500000e-13 86.1
30 TraesCS4D01G289800 chr3A 90.164 61 4 2 3757 3817 32383984 32384042 1.420000e-10 78.7
31 TraesCS4D01G289800 chr2A 84.146 82 10 3 3760 3840 346203968 346203889 5.110000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G289800 chr4D 460948028 460952792 4764 False 3819.500000 7038 100.00000 1 4765 2 chr4D.!!$F1 4764
1 TraesCS4D01G289800 chr4B 576106862 576111347 4485 False 556.533333 2490 92.20000 89 4544 9 chr4B.!!$F1 4455
2 TraesCS4D01G289800 chr4A 7462637 7466057 3420 True 1232.250000 2385 93.76675 71 4014 4 chr4A.!!$R1 3943
3 TraesCS4D01G289800 chrUn 97734594 97736087 1493 False 345.000000 446 81.51850 1059 3019 2 chrUn.!!$F1 1960
4 TraesCS4D01G289800 chr6A 53113654 53115240 1586 False 317.000000 414 79.99350 1059 3007 2 chr6A.!!$F2 1948
5 TraesCS4D01G289800 chr6B 109141600 109143001 1401 False 308.000000 401 79.97150 1059 3005 2 chr6B.!!$F1 1946

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 163 0.680921 AGATGTGTTTCGGCCCATGG 60.681 55.0 4.14 4.14 0.00 3.66 F
982 989 0.881118 CTCTATCTCCGAGGCTCTGC 59.119 60.0 13.50 0.00 0.00 4.26 F
1404 1452 0.956633 TCGTGGCATATCGAGTACCC 59.043 55.0 0.00 0.00 0.00 3.69 F
2116 2319 0.321564 GGCATGTGGTACAGTGCTGA 60.322 55.0 6.17 0.00 46.29 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1845 2041 1.270305 GCTCAGCAGTCAGTACAACCA 60.270 52.381 0.00 0.0 0.00 3.67 R
1963 2164 1.671704 GTTGCTCTGCTGCAGCTCT 60.672 57.895 36.61 0.0 44.27 4.09 R
2205 2463 2.766263 CAATCCTACCCACTAGCAGTCA 59.234 50.000 0.00 0.0 0.00 3.41 R
4098 4992 0.909623 TAGGTGCAGCTTAACCCCTC 59.090 55.000 25.47 0.0 37.13 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.019948 GGTTGGGTTAGCTACCTTCG 57.980 55.000 10.83 0.00 46.86 3.79
20 21 1.406477 GGTTGGGTTAGCTACCTTCGG 60.406 57.143 10.83 0.00 46.86 4.30
21 22 1.551883 GTTGGGTTAGCTACCTTCGGA 59.448 52.381 10.83 0.00 46.86 4.55
22 23 1.941377 TGGGTTAGCTACCTTCGGAA 58.059 50.000 10.83 0.00 46.86 4.30
23 24 2.474112 TGGGTTAGCTACCTTCGGAAT 58.526 47.619 10.83 0.00 46.86 3.01
24 25 2.841881 TGGGTTAGCTACCTTCGGAATT 59.158 45.455 10.83 0.00 46.86 2.17
25 26 4.032310 TGGGTTAGCTACCTTCGGAATTA 58.968 43.478 10.83 0.00 46.86 1.40
26 27 4.100498 TGGGTTAGCTACCTTCGGAATTAG 59.900 45.833 10.83 0.00 46.86 1.73
27 28 4.100653 GGGTTAGCTACCTTCGGAATTAGT 59.899 45.833 10.83 0.00 46.86 2.24
28 29 5.302823 GGGTTAGCTACCTTCGGAATTAGTA 59.697 44.000 10.83 0.00 46.86 1.82
29 30 6.212235 GGTTAGCTACCTTCGGAATTAGTAC 58.788 44.000 0.00 0.00 44.10 2.73
30 31 4.564940 AGCTACCTTCGGAATTAGTACG 57.435 45.455 0.00 0.00 0.00 3.67
31 32 4.202441 AGCTACCTTCGGAATTAGTACGA 58.798 43.478 0.00 0.00 34.47 3.43
32 33 4.275443 AGCTACCTTCGGAATTAGTACGAG 59.725 45.833 0.00 0.00 37.95 4.18
33 34 3.433513 ACCTTCGGAATTAGTACGAGC 57.566 47.619 0.00 0.00 37.95 5.03
34 35 2.756760 ACCTTCGGAATTAGTACGAGCA 59.243 45.455 0.00 0.00 37.95 4.26
35 36 3.194116 ACCTTCGGAATTAGTACGAGCAA 59.806 43.478 0.00 0.00 37.95 3.91
36 37 4.142004 ACCTTCGGAATTAGTACGAGCAAT 60.142 41.667 0.00 0.00 37.95 3.56
37 38 4.209288 CCTTCGGAATTAGTACGAGCAATG 59.791 45.833 0.00 0.00 37.95 2.82
38 39 3.713288 TCGGAATTAGTACGAGCAATGG 58.287 45.455 0.00 0.00 32.29 3.16
39 40 3.131577 TCGGAATTAGTACGAGCAATGGT 59.868 43.478 0.00 0.00 32.29 3.55
40 41 4.338964 TCGGAATTAGTACGAGCAATGGTA 59.661 41.667 0.00 0.00 32.29 3.25
41 42 5.010314 TCGGAATTAGTACGAGCAATGGTAT 59.990 40.000 0.00 0.00 32.29 2.73
42 43 5.345202 CGGAATTAGTACGAGCAATGGTATC 59.655 44.000 0.00 0.00 0.00 2.24
43 44 6.220930 GGAATTAGTACGAGCAATGGTATCA 58.779 40.000 0.00 0.00 0.00 2.15
44 45 6.874134 GGAATTAGTACGAGCAATGGTATCAT 59.126 38.462 0.00 0.00 34.56 2.45
45 46 7.387948 GGAATTAGTACGAGCAATGGTATCATT 59.612 37.037 0.00 0.00 43.79 2.57
46 47 7.891183 ATTAGTACGAGCAATGGTATCATTC 57.109 36.000 0.00 0.00 41.29 2.67
47 48 5.276461 AGTACGAGCAATGGTATCATTCA 57.724 39.130 0.00 0.00 41.29 2.57
48 49 5.050490 AGTACGAGCAATGGTATCATTCAC 58.950 41.667 0.00 0.00 41.29 3.18
49 50 3.872696 ACGAGCAATGGTATCATTCACA 58.127 40.909 0.00 0.00 41.29 3.58
50 51 3.623060 ACGAGCAATGGTATCATTCACAC 59.377 43.478 0.00 0.00 41.29 3.82
51 52 3.622612 CGAGCAATGGTATCATTCACACA 59.377 43.478 0.00 0.00 41.29 3.72
52 53 4.274214 CGAGCAATGGTATCATTCACACAT 59.726 41.667 0.00 0.00 41.29 3.21
53 54 5.509716 AGCAATGGTATCATTCACACATG 57.490 39.130 0.00 0.00 41.29 3.21
54 55 5.195185 AGCAATGGTATCATTCACACATGA 58.805 37.500 0.00 0.00 41.29 3.07
64 65 1.909700 TCACACATGAAGGGCTTTCC 58.090 50.000 6.91 0.00 34.77 3.13
157 163 0.680921 AGATGTGTTTCGGCCCATGG 60.681 55.000 4.14 4.14 0.00 3.66
245 252 2.237143 CAGGATTGAGCAACTCCCACTA 59.763 50.000 0.00 0.00 0.00 2.74
277 284 0.913205 ACTCTCTCTCGGTGGAGCTA 59.087 55.000 0.00 0.00 40.26 3.32
296 303 2.680352 ATCTCCGTCAGCCACCGT 60.680 61.111 0.00 0.00 0.00 4.83
982 989 0.881118 CTCTATCTCCGAGGCTCTGC 59.119 60.000 13.50 0.00 0.00 4.26
1129 1157 2.580966 GGTACGCCGAATCTTCTTCT 57.419 50.000 0.00 0.00 0.00 2.85
1283 1331 3.550431 CTCATCATCCCCGGCGGT 61.550 66.667 26.32 2.75 0.00 5.68
1379 1427 4.156739 GGATCATCAAACCTGAACTTCCAC 59.843 45.833 0.00 0.00 34.49 4.02
1380 1428 4.437682 TCATCAAACCTGAACTTCCACT 57.562 40.909 0.00 0.00 34.49 4.00
1404 1452 0.956633 TCGTGGCATATCGAGTACCC 59.043 55.000 0.00 0.00 0.00 3.69
1425 1473 3.073356 CCCAAAACTGGTTGGTAGACCTA 59.927 47.826 10.38 0.00 45.72 3.08
1447 1495 3.621715 ACTGGAGTTTTGTTTCTGTCGTC 59.378 43.478 0.00 0.00 0.00 4.20
1467 1515 3.977427 TCGCATATCGAGTACTGCAAAT 58.023 40.909 0.00 0.00 43.16 2.32
1481 1529 7.951591 AGTACTGCAAATTTGGTTGATAAACT 58.048 30.769 19.47 6.49 0.00 2.66
1492 1540 5.310451 TGGTTGATAAACTCGTAAAGGCTT 58.690 37.500 0.00 0.00 0.00 4.35
1495 1543 6.093633 GGTTGATAAACTCGTAAAGGCTTGAT 59.906 38.462 0.00 0.00 0.00 2.57
1496 1544 7.279313 GGTTGATAAACTCGTAAAGGCTTGATA 59.721 37.037 0.00 0.00 0.00 2.15
1514 1562 7.148018 GGCTTGATAAAAGATGTCTGAAATGGA 60.148 37.037 0.00 0.00 0.00 3.41
1610 1704 9.434559 GTTATAGTTTGTCATAGGCGAAAATTC 57.565 33.333 0.00 0.00 0.00 2.17
1618 1712 5.456822 GTCATAGGCGAAAATTCATTCAAGC 59.543 40.000 0.00 0.00 0.00 4.01
1687 1833 3.731652 TTTTTGGCATGTTCAGAGTGG 57.268 42.857 0.00 0.00 0.00 4.00
1723 1881 7.431960 TCATTTTGAACAACTCAACTTTGATCG 59.568 33.333 0.00 0.00 43.90 3.69
1760 1926 7.065894 CACTCTGAATTGTTGTACTTTCTTCG 58.934 38.462 0.00 0.00 0.00 3.79
1789 1976 6.369065 TCTCTAAGAAACGAAATGCTTCCTTC 59.631 38.462 0.00 0.00 0.00 3.46
1898 2094 1.537990 GGGCGCCGCATTTGATATTTT 60.538 47.619 22.54 0.00 0.00 1.82
1906 2102 6.855914 CGCCGCATTTGATATTTTTGTAGTAT 59.144 34.615 0.00 0.00 0.00 2.12
1963 2164 0.611618 TTAGTTCCGGACGGTGGCTA 60.612 55.000 1.83 8.68 36.47 3.93
2020 2223 2.869233 TCACTGTTTTTCTGCCTTGC 57.131 45.000 0.00 0.00 0.00 4.01
2116 2319 0.321564 GGCATGTGGTACAGTGCTGA 60.322 55.000 6.17 0.00 46.29 4.26
2185 2443 2.766313 GTCATGCAAGTGACCACTACA 58.234 47.619 8.95 5.78 42.04 2.74
2186 2444 3.338249 GTCATGCAAGTGACCACTACAT 58.662 45.455 8.95 7.72 42.04 2.29
2187 2445 3.753272 GTCATGCAAGTGACCACTACATT 59.247 43.478 8.95 0.00 42.04 2.71
2188 2446 4.002982 TCATGCAAGTGACCACTACATTC 58.997 43.478 12.92 0.51 41.58 2.67
2189 2447 2.778299 TGCAAGTGACCACTACATTCC 58.222 47.619 2.78 0.00 41.58 3.01
2190 2448 2.084546 GCAAGTGACCACTACATTCCC 58.915 52.381 2.78 0.00 41.58 3.97
2191 2449 2.711542 CAAGTGACCACTACATTCCCC 58.288 52.381 2.78 0.00 41.58 4.81
2192 2450 1.286248 AGTGACCACTACATTCCCCC 58.714 55.000 0.03 0.00 40.43 5.40
2210 2468 3.813443 CCCCCTGACATTAGAATGACTG 58.187 50.000 9.21 6.88 39.67 3.51
2211 2469 3.209410 CCCCTGACATTAGAATGACTGC 58.791 50.000 9.21 0.00 39.67 4.40
2212 2470 3.118112 CCCCTGACATTAGAATGACTGCT 60.118 47.826 9.21 0.00 39.67 4.24
2213 2471 4.101585 CCCCTGACATTAGAATGACTGCTA 59.898 45.833 9.21 0.00 39.67 3.49
2214 2472 5.295950 CCCTGACATTAGAATGACTGCTAG 58.704 45.833 9.21 0.00 39.67 3.42
2215 2473 5.163364 CCCTGACATTAGAATGACTGCTAGT 60.163 44.000 9.21 0.00 39.67 2.57
2216 2474 5.752472 CCTGACATTAGAATGACTGCTAGTG 59.248 44.000 9.21 0.00 39.67 2.74
2217 2475 5.664457 TGACATTAGAATGACTGCTAGTGG 58.336 41.667 9.21 0.00 39.67 4.00
2218 2476 5.028549 ACATTAGAATGACTGCTAGTGGG 57.971 43.478 9.21 0.00 39.67 4.61
2219 2477 4.471386 ACATTAGAATGACTGCTAGTGGGT 59.529 41.667 9.21 0.00 39.67 4.51
2220 2478 5.661312 ACATTAGAATGACTGCTAGTGGGTA 59.339 40.000 9.21 0.00 39.67 3.69
2230 2927 3.178046 TGCTAGTGGGTAGGATTGTTGA 58.822 45.455 0.00 0.00 0.00 3.18
2336 3037 9.275572 AGGGTGTAACTTTTATACCTCTGATAA 57.724 33.333 10.57 0.00 36.74 1.75
2360 3062 8.967552 AAAGTACACATCTTCTTAGACTAACG 57.032 34.615 0.00 0.00 31.99 3.18
2804 3520 3.624326 TTGATTGCAAACTGTTCTCCG 57.376 42.857 1.71 0.00 0.00 4.63
3019 3735 2.227626 GAGGTTTGCTTCCTGCTCTTTC 59.772 50.000 0.11 0.00 43.37 2.62
3255 3971 0.976641 CTGGCAGGAAGAGGTGTACA 59.023 55.000 6.61 0.00 0.00 2.90
3335 4051 2.681848 CCCAGAATTGACATCAGACTGC 59.318 50.000 0.00 0.00 0.00 4.40
3409 4125 4.071961 TGCTAACTCTGAAGCAAAGTGA 57.928 40.909 0.22 0.00 45.36 3.41
3501 4217 0.796927 CCGCGCTATCTCTATCGTCA 59.203 55.000 5.56 0.00 0.00 4.35
3512 4228 7.119116 GCTATCTCTATCGTCATCTTCAAGAGA 59.881 40.741 0.00 0.00 41.43 3.10
3518 4234 4.428209 TCGTCATCTTCAAGAGATTCAGC 58.572 43.478 0.00 0.00 42.55 4.26
3519 4235 3.242480 CGTCATCTTCAAGAGATTCAGCG 59.758 47.826 0.00 0.00 42.55 5.18
3592 4308 1.599576 GGAGAGGGAGTCTGCCAAC 59.400 63.158 13.56 6.35 37.67 3.77
3708 4424 6.338146 TCAAGCTACTGACATTGTATACCAC 58.662 40.000 0.00 0.00 0.00 4.16
3762 4479 7.387948 GGTCAGTTGAATACAAGTCAATACACT 59.612 37.037 0.00 0.00 37.54 3.55
3763 4480 9.419297 GTCAGTTGAATACAAGTCAATACACTA 57.581 33.333 0.00 0.00 37.54 2.74
3764 4481 9.990360 TCAGTTGAATACAAGTCAATACACTAA 57.010 29.630 0.00 0.00 37.54 2.24
3785 4502 7.828712 ACTAAAAGTAGTGATCTAAACGCTCT 58.171 34.615 0.00 0.00 39.20 4.09
3786 4503 8.305317 ACTAAAAGTAGTGATCTAAACGCTCTT 58.695 33.333 0.00 0.00 39.20 2.85
3787 4504 9.784680 CTAAAAGTAGTGATCTAAACGCTCTTA 57.215 33.333 0.00 0.00 0.00 2.10
3804 4521 9.930693 AACGCTCTTATATTTCTTTATAGAGGG 57.069 33.333 0.00 0.00 38.95 4.30
3805 4522 9.310449 ACGCTCTTATATTTCTTTATAGAGGGA 57.690 33.333 16.73 0.00 37.30 4.20
3806 4523 9.796120 CGCTCTTATATTTCTTTATAGAGGGAG 57.204 37.037 0.00 0.00 36.40 4.30
3819 4536 9.535170 CTTTATAGAGGGAGTATATGAGAACCA 57.465 37.037 0.00 0.00 0.00 3.67
3832 4549 2.354510 TGAGAACCAAAACTGCTTCACG 59.645 45.455 0.00 0.00 0.00 4.35
3865 4582 5.556355 TCGTCTGGTTATAGTACACACAG 57.444 43.478 0.00 0.00 0.00 3.66
3910 4627 1.826385 GCAGGAGGCATGTACAGTTT 58.174 50.000 0.33 0.00 43.97 2.66
3926 4645 6.995686 TGTACAGTTTCTGGCTTATCTTTTGA 59.004 34.615 0.00 0.00 35.51 2.69
3934 4655 7.383102 TCTGGCTTATCTTTTGAGTTGATTC 57.617 36.000 0.00 0.00 0.00 2.52
4002 4801 5.163131 ACCACACTAGAAAACACCCAATACT 60.163 40.000 0.00 0.00 0.00 2.12
4015 4814 4.034048 CACCCAATACTTCATACAACGAGC 59.966 45.833 0.00 0.00 0.00 5.03
4019 4818 5.234329 CCAATACTTCATACAACGAGCGAAT 59.766 40.000 0.00 0.00 0.00 3.34
4021 4820 4.111375 ACTTCATACAACGAGCGAATCT 57.889 40.909 0.00 0.00 0.00 2.40
4027 4826 2.810650 ACAACGAGCGAATCTGTATCC 58.189 47.619 0.00 0.00 0.00 2.59
4033 4832 3.120304 CGAGCGAATCTGTATCCGATACA 60.120 47.826 18.22 18.22 43.06 2.29
4043 4842 3.811497 TGTATCCGATACAGTACCTGACG 59.189 47.826 15.89 1.73 40.60 4.35
4045 4844 3.541996 TCCGATACAGTACCTGACGTA 57.458 47.619 0.00 0.00 35.18 3.57
4047 4846 4.060900 TCCGATACAGTACCTGACGTATC 58.939 47.826 0.00 0.00 39.07 2.24
4048 4847 3.188048 CCGATACAGTACCTGACGTATCC 59.812 52.174 0.00 0.00 39.16 2.59
4049 4848 3.811497 CGATACAGTACCTGACGTATCCA 59.189 47.826 0.00 0.00 39.16 3.41
4050 4849 4.454847 CGATACAGTACCTGACGTATCCAT 59.545 45.833 0.00 0.00 39.16 3.41
4052 4851 6.183360 CGATACAGTACCTGACGTATCCATAG 60.183 46.154 0.00 0.00 39.16 2.23
4053 4852 5.045012 ACAGTACCTGACGTATCCATAGA 57.955 43.478 0.00 0.00 35.18 1.98
4054 4853 5.632118 ACAGTACCTGACGTATCCATAGAT 58.368 41.667 0.00 0.00 35.18 1.98
4057 4856 7.104290 CAGTACCTGACGTATCCATAGATAGA 58.896 42.308 0.00 0.00 32.77 1.98
4058 4857 7.279090 CAGTACCTGACGTATCCATAGATAGAG 59.721 44.444 0.00 0.00 32.77 2.43
4060 4859 7.255199 ACCTGACGTATCCATAGATAGAGTA 57.745 40.000 0.00 0.00 35.61 2.59
4086 4980 2.951229 AACGGGTTGACTCCTCAAAT 57.049 45.000 0.00 0.00 38.17 2.32
4090 4984 3.244911 ACGGGTTGACTCCTCAAATGATT 60.245 43.478 0.00 0.00 38.17 2.57
4129 5024 1.895798 CTGCACCTACCTGAACTCTCA 59.104 52.381 0.00 0.00 0.00 3.27
4130 5025 2.300152 CTGCACCTACCTGAACTCTCAA 59.700 50.000 0.00 0.00 0.00 3.02
4131 5026 2.300152 TGCACCTACCTGAACTCTCAAG 59.700 50.000 0.00 0.00 0.00 3.02
4149 5044 6.902408 TCTCAAGTAGTTTAACCCCTCAAAA 58.098 36.000 0.00 0.00 0.00 2.44
4169 5067 0.033504 ATTTGAGACGTGTCAGCCGT 59.966 50.000 15.54 0.93 42.06 5.68
4174 5072 2.645567 ACGTGTCAGCCGTCTCTG 59.354 61.111 0.00 0.00 31.97 3.35
4185 5083 1.806542 GCCGTCTCTGAAATTTGAGCA 59.193 47.619 0.00 0.00 0.00 4.26
4188 5086 2.740981 CGTCTCTGAAATTTGAGCAGCT 59.259 45.455 0.00 0.00 0.00 4.24
4210 5108 4.624015 TGAAAAGCAATCTCAGCAAAAGG 58.376 39.130 0.00 0.00 0.00 3.11
4213 5111 5.789643 AAAGCAATCTCAGCAAAAGGTTA 57.210 34.783 0.00 0.00 0.00 2.85
4229 5127 2.345760 TTACCTCCCCTCGTGCGAC 61.346 63.158 0.00 0.00 0.00 5.19
4238 5136 2.915659 TCGTGCGACCACCTTCCT 60.916 61.111 0.00 0.00 38.79 3.36
4239 5137 2.432628 CGTGCGACCACCTTCCTC 60.433 66.667 0.00 0.00 38.79 3.71
4240 5138 2.047179 GTGCGACCACCTTCCTCC 60.047 66.667 0.00 0.00 35.92 4.30
4241 5139 3.319198 TGCGACCACCTTCCTCCC 61.319 66.667 0.00 0.00 0.00 4.30
4242 5140 3.003763 GCGACCACCTTCCTCCCT 61.004 66.667 0.00 0.00 0.00 4.20
4245 5143 1.996187 GACCACCTTCCTCCCTCCC 60.996 68.421 0.00 0.00 0.00 4.30
4246 5144 2.456840 CCACCTTCCTCCCTCCCT 59.543 66.667 0.00 0.00 0.00 4.20
4251 5149 1.394151 CTTCCTCCCTCCCTCCACT 59.606 63.158 0.00 0.00 0.00 4.00
4253 5151 2.443016 CCTCCCTCCCTCCACTCG 60.443 72.222 0.00 0.00 0.00 4.18
4254 5152 2.443016 CTCCCTCCCTCCACTCGG 60.443 72.222 0.00 0.00 0.00 4.63
4255 5153 4.779733 TCCCTCCCTCCACTCGGC 62.780 72.222 0.00 0.00 0.00 5.54
4292 5190 3.758931 GGTGGCCATCCCGCAAAC 61.759 66.667 9.72 0.00 46.29 2.93
4293 5191 3.758931 GTGGCCATCCCGCAAACC 61.759 66.667 9.72 0.00 43.83 3.27
4326 5224 2.526046 CGACCTCCCACCCCACTTT 61.526 63.158 0.00 0.00 0.00 2.66
4363 5261 3.880846 GCCGCCAGCTGAAATCGG 61.881 66.667 17.39 21.12 42.68 4.18
4376 5274 2.884012 TGAAATCGGTGCATCAAGTTGT 59.116 40.909 2.11 0.00 0.00 3.32
4392 5321 0.039256 TTGTTGCAGCCGCTGAAATC 60.039 50.000 24.80 14.18 39.64 2.17
4409 5338 2.183478 ATCGACACATCAAGTTGCCA 57.817 45.000 0.00 0.00 0.00 4.92
4411 5340 0.943673 CGACACATCAAGTTGCCACA 59.056 50.000 0.00 0.00 0.00 4.17
4431 5360 2.578178 CGCCTCGAGCTCGTCAAG 60.578 66.667 33.33 23.48 40.39 3.02
4444 5375 3.256960 TCAAGGAGGGCCACCACC 61.257 66.667 22.59 11.44 46.85 4.61
4448 5379 4.447342 GGAGGGCCACCACCATGG 62.447 72.222 15.80 11.19 45.87 3.66
4449 5380 3.338250 GAGGGCCACCACCATGGA 61.338 66.667 21.47 0.00 43.02 3.41
4450 5381 3.341629 AGGGCCACCACCATGGAG 61.342 66.667 21.47 11.19 43.02 3.86
4454 5385 3.716195 CCACCACCATGGAGCCGA 61.716 66.667 21.47 0.00 43.02 5.54
4455 5386 2.436646 CACCACCATGGAGCCGAC 60.437 66.667 21.47 0.00 40.96 4.79
4456 5387 3.717294 ACCACCATGGAGCCGACC 61.717 66.667 21.47 0.00 40.96 4.79
4458 5389 2.671070 CACCATGGAGCCGACCTT 59.329 61.111 21.47 0.00 0.00 3.50
4459 5390 1.450312 CACCATGGAGCCGACCTTC 60.450 63.158 21.47 0.00 0.00 3.46
4460 5391 1.918293 ACCATGGAGCCGACCTTCA 60.918 57.895 21.47 0.00 32.32 3.02
4461 5392 1.274703 ACCATGGAGCCGACCTTCAT 61.275 55.000 21.47 0.00 40.58 2.57
4462 5393 0.533755 CCATGGAGCCGACCTTCATC 60.534 60.000 5.56 0.00 37.71 2.92
4463 5394 0.877649 CATGGAGCCGACCTTCATCG 60.878 60.000 0.00 0.00 37.71 3.84
4513 5490 2.125552 CAGCCACCTCGCGATTCA 60.126 61.111 10.36 0.00 0.00 2.57
4514 5491 2.125512 AGCCACCTCGCGATTCAC 60.126 61.111 10.36 0.00 0.00 3.18
4526 5503 1.522580 GATTCACTGCCGCCTCCTC 60.523 63.158 0.00 0.00 0.00 3.71
4544 5521 1.299468 CGAGCTCATGTCGTAGCCC 60.299 63.158 15.40 0.00 39.64 5.19
4545 5522 1.816537 GAGCTCATGTCGTAGCCCA 59.183 57.895 9.40 0.00 39.64 5.36
4546 5523 0.175760 GAGCTCATGTCGTAGCCCAA 59.824 55.000 9.40 0.00 39.64 4.12
4547 5524 0.108138 AGCTCATGTCGTAGCCCAAC 60.108 55.000 0.75 0.00 39.64 3.77
4548 5525 1.090052 GCTCATGTCGTAGCCCAACC 61.090 60.000 0.00 0.00 32.40 3.77
4549 5526 0.806102 CTCATGTCGTAGCCCAACCG 60.806 60.000 0.00 0.00 0.00 4.44
4550 5527 2.125269 ATGTCGTAGCCCAACCGC 60.125 61.111 0.00 0.00 0.00 5.68
4551 5528 2.656069 ATGTCGTAGCCCAACCGCT 61.656 57.895 0.00 0.00 43.09 5.52
4552 5529 2.813908 GTCGTAGCCCAACCGCTG 60.814 66.667 0.00 0.00 40.08 5.18
4553 5530 4.752879 TCGTAGCCCAACCGCTGC 62.753 66.667 0.00 0.00 40.08 5.25
4563 5540 3.929334 AACCGCTGCCGCCCAAATA 62.929 57.895 0.00 0.00 0.00 1.40
4564 5541 2.906897 CCGCTGCCGCCCAAATAT 60.907 61.111 0.00 0.00 0.00 1.28
4565 5542 2.639286 CGCTGCCGCCCAAATATC 59.361 61.111 0.00 0.00 0.00 1.63
4566 5543 2.639286 GCTGCCGCCCAAATATCG 59.361 61.111 0.00 0.00 0.00 2.92
4567 5544 2.186826 GCTGCCGCCCAAATATCGT 61.187 57.895 0.00 0.00 0.00 3.73
4568 5545 1.648720 CTGCCGCCCAAATATCGTG 59.351 57.895 0.00 0.00 0.00 4.35
4569 5546 1.785041 CTGCCGCCCAAATATCGTGG 61.785 60.000 0.00 0.00 35.77 4.94
4570 5547 3.030652 CCGCCCAAATATCGTGGC 58.969 61.111 0.63 0.00 40.54 5.01
4572 5549 3.821995 GCCCAAATATCGTGGCGT 58.178 55.556 0.63 0.00 34.56 5.68
4573 5550 1.355210 GCCCAAATATCGTGGCGTG 59.645 57.895 0.63 0.00 34.56 5.34
4574 5551 1.092921 GCCCAAATATCGTGGCGTGA 61.093 55.000 0.63 0.00 34.56 4.35
4575 5552 0.937304 CCCAAATATCGTGGCGTGAG 59.063 55.000 0.63 0.00 34.56 3.51
4576 5553 0.937304 CCAAATATCGTGGCGTGAGG 59.063 55.000 0.00 0.00 0.00 3.86
4577 5554 1.472552 CCAAATATCGTGGCGTGAGGA 60.473 52.381 0.00 0.00 0.00 3.71
4578 5555 2.483876 CAAATATCGTGGCGTGAGGAT 58.516 47.619 0.00 0.00 0.00 3.24
4579 5556 2.154854 AATATCGTGGCGTGAGGATG 57.845 50.000 0.00 0.00 0.00 3.51
4580 5557 0.319900 ATATCGTGGCGTGAGGATGC 60.320 55.000 0.00 0.00 0.00 3.91
4581 5558 2.677573 TATCGTGGCGTGAGGATGCG 62.678 60.000 0.00 0.00 34.60 4.73
4587 5564 3.274586 CGTGAGGATGCGGCCATG 61.275 66.667 2.24 0.00 0.00 3.66
4588 5565 2.903855 GTGAGGATGCGGCCATGG 60.904 66.667 7.63 7.63 0.00 3.66
4589 5566 4.193893 TGAGGATGCGGCCATGGG 62.194 66.667 15.13 0.00 0.00 4.00
4590 5567 4.962836 GAGGATGCGGCCATGGGG 62.963 72.222 15.13 0.00 37.18 4.96
4602 5579 2.122280 ATGGGGCACATGGGCAAA 59.878 55.556 23.88 6.59 45.66 3.68
4603 5580 1.991167 ATGGGGCACATGGGCAAAG 60.991 57.895 23.88 0.00 45.66 2.77
4604 5581 2.283821 GGGGCACATGGGCAAAGA 60.284 61.111 23.88 0.00 45.66 2.52
4605 5582 1.912763 GGGGCACATGGGCAAAGAA 60.913 57.895 23.88 0.00 45.66 2.52
4606 5583 1.593265 GGGCACATGGGCAAAGAAG 59.407 57.895 23.88 0.00 45.66 2.85
4607 5584 0.899717 GGGCACATGGGCAAAGAAGA 60.900 55.000 23.88 0.00 45.66 2.87
4608 5585 1.188863 GGCACATGGGCAAAGAAGAT 58.811 50.000 23.88 0.00 42.77 2.40
4609 5586 1.135721 GGCACATGGGCAAAGAAGATC 59.864 52.381 23.88 0.00 42.77 2.75
4610 5587 1.135721 GCACATGGGCAAAGAAGATCC 59.864 52.381 16.99 0.00 0.00 3.36
4611 5588 1.402968 CACATGGGCAAAGAAGATCCG 59.597 52.381 0.00 0.00 0.00 4.18
4612 5589 1.004745 ACATGGGCAAAGAAGATCCGT 59.995 47.619 0.00 0.00 0.00 4.69
4613 5590 2.238646 ACATGGGCAAAGAAGATCCGTA 59.761 45.455 0.00 0.00 0.00 4.02
4614 5591 3.278574 CATGGGCAAAGAAGATCCGTAA 58.721 45.455 0.00 0.00 0.00 3.18
4615 5592 3.644966 TGGGCAAAGAAGATCCGTAAT 57.355 42.857 0.00 0.00 0.00 1.89
4616 5593 4.764050 TGGGCAAAGAAGATCCGTAATA 57.236 40.909 0.00 0.00 0.00 0.98
4617 5594 5.304686 TGGGCAAAGAAGATCCGTAATAT 57.695 39.130 0.00 0.00 0.00 1.28
4618 5595 5.063204 TGGGCAAAGAAGATCCGTAATATG 58.937 41.667 0.00 0.00 0.00 1.78
4619 5596 4.455877 GGGCAAAGAAGATCCGTAATATGG 59.544 45.833 0.00 0.00 0.00 2.74
4620 5597 5.305585 GGCAAAGAAGATCCGTAATATGGA 58.694 41.667 3.36 3.36 37.75 3.41
4621 5598 5.179555 GGCAAAGAAGATCCGTAATATGGAC 59.820 44.000 2.88 0.00 35.83 4.02
4622 5599 5.758296 GCAAAGAAGATCCGTAATATGGACA 59.242 40.000 2.88 0.00 35.83 4.02
4623 5600 6.292919 GCAAAGAAGATCCGTAATATGGACAC 60.293 42.308 2.88 1.82 35.83 3.67
4624 5601 5.122512 AGAAGATCCGTAATATGGACACG 57.877 43.478 2.88 0.00 35.83 4.49
4625 5602 3.299340 AGATCCGTAATATGGACACGC 57.701 47.619 2.88 0.00 35.83 5.34
4626 5603 1.983605 GATCCGTAATATGGACACGCG 59.016 52.381 3.53 3.53 35.83 6.01
4627 5604 1.023502 TCCGTAATATGGACACGCGA 58.976 50.000 15.93 0.00 34.42 5.87
4628 5605 1.002142 TCCGTAATATGGACACGCGAG 60.002 52.381 15.93 7.88 34.42 5.03
4629 5606 1.002142 CCGTAATATGGACACGCGAGA 60.002 52.381 15.93 0.00 34.42 4.04
4630 5607 2.542205 CCGTAATATGGACACGCGAGAA 60.542 50.000 15.93 0.00 34.42 2.87
4631 5608 2.466571 CGTAATATGGACACGCGAGAAC 59.533 50.000 15.93 4.00 0.00 3.01
4632 5609 2.665649 AATATGGACACGCGAGAACA 57.334 45.000 15.93 10.37 0.00 3.18
4633 5610 2.890808 ATATGGACACGCGAGAACAT 57.109 45.000 15.93 16.90 0.00 2.71
4634 5611 1.921243 TATGGACACGCGAGAACATG 58.079 50.000 15.93 0.68 0.00 3.21
4635 5612 0.037326 ATGGACACGCGAGAACATGT 60.037 50.000 15.93 4.98 0.00 3.21
4636 5613 0.943835 TGGACACGCGAGAACATGTG 60.944 55.000 15.93 0.00 38.28 3.21
4637 5614 4.750460 ACACGCGAGAACATGTGT 57.250 50.000 15.93 0.00 40.51 3.72
4639 5616 1.492873 CACGCGAGAACATGTGTGG 59.507 57.895 15.93 0.00 41.62 4.17
4640 5617 2.317609 ACGCGAGAACATGTGTGGC 61.318 57.895 15.93 2.02 0.00 5.01
4641 5618 2.029288 CGCGAGAACATGTGTGGCT 61.029 57.895 0.00 0.00 0.00 4.75
4642 5619 1.568612 CGCGAGAACATGTGTGGCTT 61.569 55.000 0.00 0.00 0.00 4.35
4643 5620 0.110056 GCGAGAACATGTGTGGCTTG 60.110 55.000 0.00 0.28 0.00 4.01
4644 5621 0.518636 CGAGAACATGTGTGGCTTGG 59.481 55.000 0.00 0.00 0.00 3.61
4645 5622 0.242017 GAGAACATGTGTGGCTTGGC 59.758 55.000 0.00 0.00 0.00 4.52
4646 5623 0.467844 AGAACATGTGTGGCTTGGCA 60.468 50.000 0.00 0.00 0.00 4.92
4647 5624 0.318955 GAACATGTGTGGCTTGGCAC 60.319 55.000 18.51 18.51 36.26 5.01
4650 5627 4.274012 TGTGTGGCTTGGCACATT 57.726 50.000 27.81 0.00 40.24 2.71
4651 5628 2.040330 TGTGTGGCTTGGCACATTC 58.960 52.632 27.81 18.37 40.24 2.67
4652 5629 1.081242 GTGTGGCTTGGCACATTCG 60.081 57.895 27.81 0.00 39.30 3.34
4653 5630 2.126346 GTGGCTTGGCACATTCGC 60.126 61.111 20.04 0.00 39.30 4.70
4661 5638 3.654201 GCACATTCGCCACTGTGA 58.346 55.556 9.86 0.00 44.35 3.58
4662 5639 1.948508 GCACATTCGCCACTGTGAA 59.051 52.632 9.86 0.00 44.35 3.18
4663 5640 0.110056 GCACATTCGCCACTGTGAAG 60.110 55.000 9.86 2.75 44.35 3.02
4664 5641 0.518636 CACATTCGCCACTGTGAAGG 59.481 55.000 9.86 0.00 45.59 3.46
4665 5642 0.396435 ACATTCGCCACTGTGAAGGA 59.604 50.000 9.86 0.37 43.51 3.36
4666 5643 1.081892 CATTCGCCACTGTGAAGGAG 58.918 55.000 9.86 0.00 43.51 3.69
4667 5644 0.687354 ATTCGCCACTGTGAAGGAGT 59.313 50.000 9.86 0.00 43.73 3.85
4668 5645 0.468226 TTCGCCACTGTGAAGGAGTT 59.532 50.000 9.86 0.00 36.11 3.01
4669 5646 0.249868 TCGCCACTGTGAAGGAGTTG 60.250 55.000 9.86 0.00 0.00 3.16
4670 5647 1.230635 CGCCACTGTGAAGGAGTTGG 61.231 60.000 9.86 0.00 0.00 3.77
4671 5648 0.179018 GCCACTGTGAAGGAGTTGGT 60.179 55.000 9.86 0.00 0.00 3.67
4672 5649 1.597742 CCACTGTGAAGGAGTTGGTG 58.402 55.000 9.86 0.00 0.00 4.17
4673 5650 0.947244 CACTGTGAAGGAGTTGGTGC 59.053 55.000 0.32 0.00 0.00 5.01
4674 5651 0.532862 ACTGTGAAGGAGTTGGTGCG 60.533 55.000 0.00 0.00 0.00 5.34
4675 5652 1.845809 CTGTGAAGGAGTTGGTGCGC 61.846 60.000 0.00 0.00 0.00 6.09
4676 5653 2.664851 TGAAGGAGTTGGTGCGCG 60.665 61.111 0.00 0.00 0.00 6.86
4677 5654 4.090057 GAAGGAGTTGGTGCGCGC 62.090 66.667 27.26 27.26 0.00 6.86
4680 5657 4.752879 GGAGTTGGTGCGCGCCTA 62.753 66.667 37.39 29.42 0.00 3.93
4681 5658 3.488090 GAGTTGGTGCGCGCCTAC 61.488 66.667 36.72 36.72 35.09 3.18
4684 5661 4.444838 TTGGTGCGCGCCTACGAT 62.445 61.111 37.39 0.00 43.93 3.73
4695 5672 4.873129 CTACGATGCCACGGCGCT 62.873 66.667 6.90 0.00 45.51 5.92
4696 5673 4.444838 TACGATGCCACGGCGCTT 62.445 61.111 6.90 0.00 45.51 4.68
4709 5686 4.590487 CGCTTCGCTACTTTGGGA 57.410 55.556 0.00 0.00 0.00 4.37
4710 5687 2.373938 CGCTTCGCTACTTTGGGAG 58.626 57.895 0.00 0.00 0.00 4.30
4711 5688 1.696832 CGCTTCGCTACTTTGGGAGC 61.697 60.000 0.00 0.00 35.24 4.70
4712 5689 0.391793 GCTTCGCTACTTTGGGAGCT 60.392 55.000 0.00 0.00 36.50 4.09
4713 5690 1.134788 GCTTCGCTACTTTGGGAGCTA 60.135 52.381 0.00 0.00 36.50 3.32
4714 5691 2.815478 CTTCGCTACTTTGGGAGCTAG 58.185 52.381 0.00 0.00 36.50 3.42
4715 5692 1.112113 TCGCTACTTTGGGAGCTAGG 58.888 55.000 0.00 0.00 36.50 3.02
4716 5693 0.530870 CGCTACTTTGGGAGCTAGGC 60.531 60.000 0.00 0.00 36.50 3.93
4717 5694 0.833949 GCTACTTTGGGAGCTAGGCT 59.166 55.000 0.00 0.00 43.88 4.58
4718 5695 2.040178 GCTACTTTGGGAGCTAGGCTA 58.960 52.381 0.00 0.00 39.88 3.93
4719 5696 2.434702 GCTACTTTGGGAGCTAGGCTAA 59.565 50.000 0.00 0.00 39.88 3.09
4720 5697 3.493524 GCTACTTTGGGAGCTAGGCTAAG 60.494 52.174 0.00 0.00 39.88 2.18
4721 5698 1.210722 ACTTTGGGAGCTAGGCTAAGC 59.789 52.381 0.00 1.82 39.88 3.09
4730 5707 2.556257 GCTAGGCTAAGCTCAACTTCC 58.444 52.381 0.00 0.00 39.97 3.46
4731 5708 2.743510 GCTAGGCTAAGCTCAACTTCCC 60.744 54.545 0.00 0.00 39.97 3.97
4732 5709 0.621082 AGGCTAAGCTCAACTTCCCC 59.379 55.000 0.00 0.00 39.97 4.81
4733 5710 0.328258 GGCTAAGCTCAACTTCCCCA 59.672 55.000 0.00 0.00 39.97 4.96
4734 5711 1.064389 GGCTAAGCTCAACTTCCCCAT 60.064 52.381 0.00 0.00 39.97 4.00
4735 5712 2.293170 GCTAAGCTCAACTTCCCCATC 58.707 52.381 0.00 0.00 39.97 3.51
4736 5713 2.555199 CTAAGCTCAACTTCCCCATCG 58.445 52.381 0.00 0.00 39.97 3.84
4737 5714 0.984230 AAGCTCAACTTCCCCATCGA 59.016 50.000 0.00 0.00 30.77 3.59
4738 5715 0.250513 AGCTCAACTTCCCCATCGAC 59.749 55.000 0.00 0.00 0.00 4.20
4739 5716 1.084370 GCTCAACTTCCCCATCGACG 61.084 60.000 0.00 0.00 0.00 5.12
4740 5717 0.246635 CTCAACTTCCCCATCGACGT 59.753 55.000 0.00 0.00 0.00 4.34
4741 5718 0.682852 TCAACTTCCCCATCGACGTT 59.317 50.000 0.00 0.00 0.00 3.99
4742 5719 1.076332 CAACTTCCCCATCGACGTTC 58.924 55.000 0.00 0.00 0.00 3.95
4743 5720 0.036671 AACTTCCCCATCGACGTTCC 60.037 55.000 0.00 0.00 0.00 3.62
4744 5721 1.518572 CTTCCCCATCGACGTTCCG 60.519 63.158 0.00 0.00 0.00 4.30
4745 5722 2.221906 CTTCCCCATCGACGTTCCGT 62.222 60.000 0.00 0.00 45.10 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.209288 CCATTGCTCGTACTAATTCCGAAG 59.791 45.833 0.00 0.00 0.00 3.79
16 17 4.116961 CCATTGCTCGTACTAATTCCGAA 58.883 43.478 0.00 0.00 0.00 4.30
17 18 3.131577 ACCATTGCTCGTACTAATTCCGA 59.868 43.478 0.00 0.00 0.00 4.55
18 19 3.454375 ACCATTGCTCGTACTAATTCCG 58.546 45.455 0.00 0.00 0.00 4.30
19 20 6.220930 TGATACCATTGCTCGTACTAATTCC 58.779 40.000 0.00 0.00 0.00 3.01
20 21 7.891183 ATGATACCATTGCTCGTACTAATTC 57.109 36.000 0.00 0.00 0.00 2.17
21 22 7.931407 TGAATGATACCATTGCTCGTACTAATT 59.069 33.333 0.00 0.00 42.66 1.40
22 23 7.385205 GTGAATGATACCATTGCTCGTACTAAT 59.615 37.037 0.00 0.00 42.66 1.73
23 24 6.700081 GTGAATGATACCATTGCTCGTACTAA 59.300 38.462 0.00 0.00 42.66 2.24
24 25 6.183360 TGTGAATGATACCATTGCTCGTACTA 60.183 38.462 0.00 0.00 42.66 1.82
25 26 5.050490 GTGAATGATACCATTGCTCGTACT 58.950 41.667 0.00 0.00 42.66 2.73
26 27 4.808895 TGTGAATGATACCATTGCTCGTAC 59.191 41.667 0.00 0.00 42.66 3.67
27 28 4.808895 GTGTGAATGATACCATTGCTCGTA 59.191 41.667 0.00 0.00 42.66 3.43
28 29 3.623060 GTGTGAATGATACCATTGCTCGT 59.377 43.478 0.00 0.00 42.66 4.18
29 30 3.622612 TGTGTGAATGATACCATTGCTCG 59.377 43.478 0.00 0.00 42.66 5.03
30 31 5.297527 TCATGTGTGAATGATACCATTGCTC 59.702 40.000 0.00 0.00 42.66 4.26
31 32 5.195185 TCATGTGTGAATGATACCATTGCT 58.805 37.500 0.00 0.00 42.66 3.91
32 33 5.503662 TCATGTGTGAATGATACCATTGC 57.496 39.130 0.00 0.00 42.66 3.56
33 34 6.460537 CCCTTCATGTGTGAATGATACCATTG 60.461 42.308 0.00 0.00 43.08 2.82
34 35 5.595542 CCCTTCATGTGTGAATGATACCATT 59.404 40.000 0.00 0.00 43.08 3.16
35 36 5.135383 CCCTTCATGTGTGAATGATACCAT 58.865 41.667 0.00 0.00 43.08 3.55
36 37 4.525996 CCCTTCATGTGTGAATGATACCA 58.474 43.478 0.00 0.00 43.08 3.25
37 38 3.316308 GCCCTTCATGTGTGAATGATACC 59.684 47.826 0.00 0.00 43.08 2.73
38 39 4.202441 AGCCCTTCATGTGTGAATGATAC 58.798 43.478 0.00 0.00 43.08 2.24
39 40 4.508551 AGCCCTTCATGTGTGAATGATA 57.491 40.909 0.00 0.00 43.08 2.15
40 41 3.377253 AGCCCTTCATGTGTGAATGAT 57.623 42.857 0.00 0.00 43.08 2.45
41 42 2.885135 AGCCCTTCATGTGTGAATGA 57.115 45.000 0.00 0.00 43.08 2.57
42 43 3.367703 GGAAAGCCCTTCATGTGTGAATG 60.368 47.826 0.00 0.00 43.08 2.67
43 44 2.827921 GGAAAGCCCTTCATGTGTGAAT 59.172 45.455 0.00 0.00 43.08 2.57
44 45 2.158475 AGGAAAGCCCTTCATGTGTGAA 60.158 45.455 0.00 0.00 44.85 3.18
45 46 1.425066 AGGAAAGCCCTTCATGTGTGA 59.575 47.619 0.00 0.00 44.85 3.58
46 47 1.915141 AGGAAAGCCCTTCATGTGTG 58.085 50.000 0.00 0.00 44.85 3.82
56 57 3.009714 ACGAGGGGAGGAAAGCCC 61.010 66.667 0.00 0.00 45.25 5.19
57 58 2.269241 CACGAGGGGAGGAAAGCC 59.731 66.667 0.00 0.00 0.00 4.35
58 59 2.436824 GCACGAGGGGAGGAAAGC 60.437 66.667 0.00 0.00 0.00 3.51
59 60 2.125512 CGCACGAGGGGAGGAAAG 60.126 66.667 0.00 0.00 0.00 2.62
60 61 2.513259 AACGCACGAGGGGAGGAAA 61.513 57.895 0.00 0.00 0.00 3.13
61 62 2.920912 AACGCACGAGGGGAGGAA 60.921 61.111 0.00 0.00 0.00 3.36
62 63 3.691342 CAACGCACGAGGGGAGGA 61.691 66.667 0.00 0.00 0.00 3.71
64 65 4.680237 TGCAACGCACGAGGGGAG 62.680 66.667 0.00 0.00 31.71 4.30
65 66 4.680237 CTGCAACGCACGAGGGGA 62.680 66.667 0.00 0.00 33.79 4.81
69 70 2.028766 CTATGGCTGCAACGCACGAG 62.029 60.000 0.50 0.00 33.79 4.18
157 163 2.674084 GGCCGTCCGTTGTTACTGC 61.674 63.158 0.00 0.00 0.00 4.40
245 252 0.419459 AGAGAGTGGGGGAGAATGGT 59.581 55.000 0.00 0.00 0.00 3.55
277 284 2.982130 GGTGGCTGACGGAGATGT 59.018 61.111 0.00 0.00 0.00 3.06
1283 1331 2.352422 GCCATGGTGGTGCTCTCA 59.648 61.111 14.67 0.00 40.46 3.27
1341 1389 3.616956 TGATCCTGCAGAAACGAGAAT 57.383 42.857 17.39 0.00 0.00 2.40
1379 1427 2.223595 ACTCGATATGCCACGACAGAAG 60.224 50.000 0.00 0.00 34.82 2.85
1380 1428 1.749063 ACTCGATATGCCACGACAGAA 59.251 47.619 0.00 0.00 34.82 3.02
1425 1473 3.606687 ACGACAGAAACAAAACTCCAGT 58.393 40.909 0.00 0.00 0.00 4.00
1447 1495 4.715520 AATTTGCAGTACTCGATATGCG 57.284 40.909 0.00 0.00 41.58 4.73
1467 1515 5.766174 AGCCTTTACGAGTTTATCAACCAAA 59.234 36.000 0.00 0.00 32.70 3.28
1481 1529 7.064609 CAGACATCTTTTATCAAGCCTTTACGA 59.935 37.037 0.00 0.00 0.00 3.43
1492 1540 7.148188 GCTGTCCATTTCAGACATCTTTTATCA 60.148 37.037 0.00 0.00 43.04 2.15
1495 1543 5.415701 GGCTGTCCATTTCAGACATCTTTTA 59.584 40.000 0.00 0.00 43.04 1.52
1496 1544 4.219288 GGCTGTCCATTTCAGACATCTTTT 59.781 41.667 0.00 0.00 43.04 2.27
1514 1562 6.592994 CGAATATCATCTTGTATCATGGCTGT 59.407 38.462 0.00 0.00 0.00 4.40
1610 1704 6.381801 AGTGAAAAACTAATCCGCTTGAATG 58.618 36.000 0.00 0.00 37.36 2.67
1618 1712 4.794169 CCCACAAGTGAAAAACTAATCCG 58.206 43.478 0.94 0.00 38.56 4.18
1723 1881 4.558538 ATTCAGAGTGTTTGTTCAGTGC 57.441 40.909 0.00 0.00 0.00 4.40
1760 1926 6.229561 AGCATTTCGTTTCTTAGAGACAAC 57.770 37.500 3.85 0.00 0.00 3.32
1789 1976 4.392138 GTCCTCTTTTCTTATGACCAACCG 59.608 45.833 0.00 0.00 0.00 4.44
1845 2041 1.270305 GCTCAGCAGTCAGTACAACCA 60.270 52.381 0.00 0.00 0.00 3.67
1963 2164 1.671704 GTTGCTCTGCTGCAGCTCT 60.672 57.895 36.61 0.00 44.27 4.09
2020 2223 8.974060 TCACATTTTTAGGGCCTTATAAGTAG 57.026 34.615 13.45 1.49 0.00 2.57
2116 2319 4.389374 ACATGTACTAGCTTGCAGTTTGT 58.611 39.130 0.00 0.00 0.00 2.83
2164 2422 2.368548 TGTAGTGGTCACTTGCATGACT 59.631 45.455 17.59 7.93 46.85 3.41
2166 2424 3.701205 ATGTAGTGGTCACTTGCATGA 57.299 42.857 9.02 0.00 42.54 3.07
2189 2447 3.813443 CAGTCATTCTAATGTCAGGGGG 58.187 50.000 2.80 0.00 37.65 5.40
2190 2448 3.118112 AGCAGTCATTCTAATGTCAGGGG 60.118 47.826 2.80 0.00 37.65 4.79
2191 2449 4.148128 AGCAGTCATTCTAATGTCAGGG 57.852 45.455 2.80 0.00 37.65 4.45
2192 2450 5.752472 CACTAGCAGTCATTCTAATGTCAGG 59.248 44.000 2.80 0.00 37.65 3.86
2193 2451 5.752472 CCACTAGCAGTCATTCTAATGTCAG 59.248 44.000 2.80 0.00 37.65 3.51
2194 2452 5.395657 CCCACTAGCAGTCATTCTAATGTCA 60.396 44.000 2.80 0.00 37.65 3.58
2195 2453 5.053145 CCCACTAGCAGTCATTCTAATGTC 58.947 45.833 2.80 0.00 37.65 3.06
2196 2454 4.471386 ACCCACTAGCAGTCATTCTAATGT 59.529 41.667 2.80 0.00 37.65 2.71
2197 2455 5.028549 ACCCACTAGCAGTCATTCTAATG 57.971 43.478 0.00 0.00 37.75 1.90
2198 2456 5.305644 CCTACCCACTAGCAGTCATTCTAAT 59.694 44.000 0.00 0.00 0.00 1.73
2199 2457 4.649674 CCTACCCACTAGCAGTCATTCTAA 59.350 45.833 0.00 0.00 0.00 2.10
2200 2458 4.079385 TCCTACCCACTAGCAGTCATTCTA 60.079 45.833 0.00 0.00 0.00 2.10
2201 2459 3.034635 CCTACCCACTAGCAGTCATTCT 58.965 50.000 0.00 0.00 0.00 2.40
2202 2460 3.031736 TCCTACCCACTAGCAGTCATTC 58.968 50.000 0.00 0.00 0.00 2.67
2203 2461 3.116096 TCCTACCCACTAGCAGTCATT 57.884 47.619 0.00 0.00 0.00 2.57
2204 2462 2.848678 TCCTACCCACTAGCAGTCAT 57.151 50.000 0.00 0.00 0.00 3.06
2205 2463 2.766263 CAATCCTACCCACTAGCAGTCA 59.234 50.000 0.00 0.00 0.00 3.41
2206 2464 2.766828 ACAATCCTACCCACTAGCAGTC 59.233 50.000 0.00 0.00 0.00 3.51
2207 2465 2.834113 ACAATCCTACCCACTAGCAGT 58.166 47.619 0.00 0.00 0.00 4.40
2208 2466 3.197766 TCAACAATCCTACCCACTAGCAG 59.802 47.826 0.00 0.00 0.00 4.24
2209 2467 3.178046 TCAACAATCCTACCCACTAGCA 58.822 45.455 0.00 0.00 0.00 3.49
2210 2468 3.906720 TCAACAATCCTACCCACTAGC 57.093 47.619 0.00 0.00 0.00 3.42
2211 2469 4.164221 ACCATCAACAATCCTACCCACTAG 59.836 45.833 0.00 0.00 0.00 2.57
2212 2470 4.108570 ACCATCAACAATCCTACCCACTA 58.891 43.478 0.00 0.00 0.00 2.74
2213 2471 2.919602 ACCATCAACAATCCTACCCACT 59.080 45.455 0.00 0.00 0.00 4.00
2214 2472 3.366052 ACCATCAACAATCCTACCCAC 57.634 47.619 0.00 0.00 0.00 4.61
2215 2473 5.725551 ATAACCATCAACAATCCTACCCA 57.274 39.130 0.00 0.00 0.00 4.51
2216 2474 7.264947 CAAAATAACCATCAACAATCCTACCC 58.735 38.462 0.00 0.00 0.00 3.69
2217 2475 6.756542 GCAAAATAACCATCAACAATCCTACC 59.243 38.462 0.00 0.00 0.00 3.18
2218 2476 7.319646 TGCAAAATAACCATCAACAATCCTAC 58.680 34.615 0.00 0.00 0.00 3.18
2219 2477 7.473735 TGCAAAATAACCATCAACAATCCTA 57.526 32.000 0.00 0.00 0.00 2.94
2220 2478 6.357579 TGCAAAATAACCATCAACAATCCT 57.642 33.333 0.00 0.00 0.00 3.24
2230 2927 9.289782 GGATCTAGTTCTATGCAAAATAACCAT 57.710 33.333 0.00 0.00 0.00 3.55
2336 3037 8.108551 ACGTTAGTCTAAGAAGATGTGTACTT 57.891 34.615 0.00 0.00 33.30 2.24
2360 3062 8.690680 TGTTGGACATTTAACAGTGTAAAAAC 57.309 30.769 0.00 0.84 33.29 2.43
2515 3226 9.638239 CACCAAATTAAAAGCTAAAGCATCTAA 57.362 29.630 4.54 0.00 45.16 2.10
2674 3385 5.653769 CCATCAAATAGACAACATGGTCCTT 59.346 40.000 0.00 0.00 38.59 3.36
2764 3475 9.352784 CAATCAAACGTGGTTCACATTAATATT 57.647 29.630 0.00 0.00 33.40 1.28
2765 3476 7.487829 GCAATCAAACGTGGTTCACATTAATAT 59.512 33.333 0.00 0.00 33.40 1.28
2766 3477 6.804295 GCAATCAAACGTGGTTCACATTAATA 59.196 34.615 0.00 0.00 33.40 0.98
2767 3478 5.633182 GCAATCAAACGTGGTTCACATTAAT 59.367 36.000 0.00 0.00 33.40 1.40
2768 3479 4.979197 GCAATCAAACGTGGTTCACATTAA 59.021 37.500 0.00 0.00 33.40 1.40
3019 3735 3.059597 CAGTTGCCAGTAAGTCAAACTCG 60.060 47.826 0.00 0.00 0.00 4.18
3163 3879 2.778299 TGTTTTCGACAAGGGATCCAG 58.222 47.619 15.23 5.27 34.69 3.86
3255 3971 3.305335 GCAACAATCACCCGATCTTTTGT 60.305 43.478 0.00 0.00 0.00 2.83
3512 4228 3.561120 TTTGACCCGCCCGCTGAAT 62.561 57.895 0.00 0.00 0.00 2.57
3682 4398 7.495934 GTGGTATACAATGTCAGTAGCTTGATT 59.504 37.037 5.01 0.00 0.00 2.57
3708 4424 6.801539 TCCTTTAGCAAGATTACAAGTGTG 57.198 37.500 0.00 0.00 30.57 3.82
3778 4495 9.930693 CCCTCTATAAAGAAATATAAGAGCGTT 57.069 33.333 0.00 0.00 0.00 4.84
3779 4496 9.310449 TCCCTCTATAAAGAAATATAAGAGCGT 57.690 33.333 0.00 0.00 0.00 5.07
3780 4497 9.796120 CTCCCTCTATAAAGAAATATAAGAGCG 57.204 37.037 0.00 0.00 0.00 5.03
3792 4509 9.756571 GGTTCTCATATACTCCCTCTATAAAGA 57.243 37.037 0.00 0.00 0.00 2.52
3793 4510 9.535170 TGGTTCTCATATACTCCCTCTATAAAG 57.465 37.037 0.00 0.00 0.00 1.85
3794 4511 9.892444 TTGGTTCTCATATACTCCCTCTATAAA 57.108 33.333 0.00 0.00 0.00 1.40
3795 4512 9.892444 TTTGGTTCTCATATACTCCCTCTATAA 57.108 33.333 0.00 0.00 0.00 0.98
3796 4513 9.892444 TTTTGGTTCTCATATACTCCCTCTATA 57.108 33.333 0.00 0.00 0.00 1.31
3797 4514 8.652290 GTTTTGGTTCTCATATACTCCCTCTAT 58.348 37.037 0.00 0.00 0.00 1.98
3798 4515 7.844779 AGTTTTGGTTCTCATATACTCCCTCTA 59.155 37.037 0.00 0.00 0.00 2.43
3799 4516 6.674419 AGTTTTGGTTCTCATATACTCCCTCT 59.326 38.462 0.00 0.00 0.00 3.69
3800 4517 6.763610 CAGTTTTGGTTCTCATATACTCCCTC 59.236 42.308 0.00 0.00 0.00 4.30
3801 4518 6.653989 CAGTTTTGGTTCTCATATACTCCCT 58.346 40.000 0.00 0.00 0.00 4.20
3802 4519 5.297029 GCAGTTTTGGTTCTCATATACTCCC 59.703 44.000 0.00 0.00 0.00 4.30
3803 4520 6.116126 AGCAGTTTTGGTTCTCATATACTCC 58.884 40.000 0.00 0.00 0.00 3.85
3804 4521 7.617041 AAGCAGTTTTGGTTCTCATATACTC 57.383 36.000 0.00 0.00 40.87 2.59
3832 4549 2.774439 ACCAGACGAAAAATGTGTGC 57.226 45.000 0.00 0.00 29.86 4.57
3865 4582 1.203287 GCTTGCCCTTCTGATCAAACC 59.797 52.381 0.00 0.00 0.00 3.27
3899 4616 6.992063 AAGATAAGCCAGAAACTGTACATG 57.008 37.500 0.00 0.00 0.00 3.21
3907 4624 6.970484 TCAACTCAAAAGATAAGCCAGAAAC 58.030 36.000 0.00 0.00 0.00 2.78
3910 4627 6.092670 CGAATCAACTCAAAAGATAAGCCAGA 59.907 38.462 0.00 0.00 0.00 3.86
3926 4645 4.130118 GCATAGATTGGACCGAATCAACT 58.870 43.478 14.96 0.00 35.16 3.16
3934 4655 3.627123 TGAAACATGCATAGATTGGACCG 59.373 43.478 0.00 0.00 0.00 4.79
4002 4801 3.845178 ACAGATTCGCTCGTTGTATGAA 58.155 40.909 0.00 0.00 0.00 2.57
4033 4832 7.038160 ACTCTATCTATGGATACGTCAGGTACT 60.038 40.741 0.00 0.00 39.20 2.73
4034 4833 7.104939 ACTCTATCTATGGATACGTCAGGTAC 58.895 42.308 0.00 0.00 42.51 3.34
4047 4846 8.804204 ACCCGTTTTAGAATACTCTATCTATGG 58.196 37.037 0.00 0.00 34.06 2.74
4050 4849 9.412460 TCAACCCGTTTTAGAATACTCTATCTA 57.588 33.333 0.00 0.00 34.06 1.98
4052 4851 8.196103 AGTCAACCCGTTTTAGAATACTCTATC 58.804 37.037 0.00 0.00 34.06 2.08
4053 4852 8.075761 AGTCAACCCGTTTTAGAATACTCTAT 57.924 34.615 0.00 0.00 34.06 1.98
4054 4853 7.363268 GGAGTCAACCCGTTTTAGAATACTCTA 60.363 40.741 0.00 0.00 32.70 2.43
4057 4856 5.247792 AGGAGTCAACCCGTTTTAGAATACT 59.752 40.000 0.00 0.00 0.00 2.12
4058 4857 5.485620 AGGAGTCAACCCGTTTTAGAATAC 58.514 41.667 0.00 0.00 0.00 1.89
4060 4859 4.041198 TGAGGAGTCAACCCGTTTTAGAAT 59.959 41.667 0.00 0.00 0.00 2.40
4098 4992 0.909623 TAGGTGCAGCTTAACCCCTC 59.090 55.000 25.47 0.00 37.13 4.30
4129 5024 8.983789 TCAAATTTTTGAGGGGTTAAACTACTT 58.016 29.630 1.66 0.00 41.88 2.24
4130 5025 8.541899 TCAAATTTTTGAGGGGTTAAACTACT 57.458 30.769 1.66 0.00 41.88 2.57
4149 5044 1.148310 CGGCTGACACGTCTCAAATT 58.852 50.000 0.00 0.00 0.00 1.82
4158 5053 0.318699 TTTCAGAGACGGCTGACACG 60.319 55.000 0.00 0.00 44.08 4.49
4169 5067 4.011966 TCAGCTGCTCAAATTTCAGAGA 57.988 40.909 9.47 4.15 33.74 3.10
4174 5072 4.642424 GCTTTTCAGCTGCTCAAATTTC 57.358 40.909 9.47 0.00 43.51 2.17
4188 5086 4.099881 ACCTTTTGCTGAGATTGCTTTTCA 59.900 37.500 0.00 0.00 0.00 2.69
4210 5108 2.183555 CGCACGAGGGGAGGTAAC 59.816 66.667 0.00 0.00 0.00 2.50
4229 5127 1.690985 GAGGGAGGGAGGAAGGTGG 60.691 68.421 0.00 0.00 0.00 4.61
4231 5129 2.184631 TGGAGGGAGGGAGGAAGGT 61.185 63.158 0.00 0.00 0.00 3.50
4238 5136 4.779733 GCCGAGTGGAGGGAGGGA 62.780 72.222 0.00 0.00 37.49 4.20
4275 5173 3.758931 GTTTGCGGGATGGCCACC 61.759 66.667 8.16 12.09 35.15 4.61
4276 5174 3.758931 GGTTTGCGGGATGGCCAC 61.759 66.667 8.16 1.35 35.15 5.01
4280 5178 3.131478 GACGGGTTTGCGGGATGG 61.131 66.667 0.00 0.00 0.00 3.51
4281 5179 3.496131 CGACGGGTTTGCGGGATG 61.496 66.667 0.00 0.00 0.00 3.51
4282 5180 4.770874 CCGACGGGTTTGCGGGAT 62.771 66.667 5.81 0.00 41.29 3.85
4326 5224 2.202610 CTGCCGACGAGCGAATCA 60.203 61.111 0.00 0.00 44.57 2.57
4363 5261 1.134226 GCTGCAACAACTTGATGCAC 58.866 50.000 19.59 13.76 46.77 4.57
4376 5274 1.670730 TCGATTTCAGCGGCTGCAA 60.671 52.632 24.78 20.78 46.23 4.08
4392 5321 0.943673 TGTGGCAACTTGATGTGTCG 59.056 50.000 0.00 0.00 37.61 4.35
4425 5354 3.636231 TGGTGGCCCTCCTTGACG 61.636 66.667 13.97 0.00 0.00 4.35
4429 5358 2.535317 ATGGTGGTGGCCCTCCTT 60.535 61.111 13.97 5.56 43.59 3.36
4431 5360 4.447342 CCATGGTGGTGGCCCTCC 62.447 72.222 2.57 3.26 43.51 4.30
4444 5375 0.877649 CGATGAAGGTCGGCTCCATG 60.878 60.000 0.00 0.00 37.94 3.66
4445 5376 1.443407 CGATGAAGGTCGGCTCCAT 59.557 57.895 0.00 0.00 37.94 3.41
4446 5377 2.892640 CGATGAAGGTCGGCTCCA 59.107 61.111 0.00 0.00 37.94 3.86
4498 5475 2.125512 AGTGAATCGCGAGGTGGC 60.126 61.111 16.66 3.60 0.00 5.01
4526 5503 1.299468 GGGCTACGACATGAGCTCG 60.299 63.158 9.64 0.28 38.79 5.03
4545 5522 3.929334 TATTTGGGCGGCAGCGGTT 62.929 57.895 12.47 0.00 46.35 4.44
4546 5523 3.714487 ATATTTGGGCGGCAGCGGT 62.714 57.895 12.47 0.00 46.35 5.68
4547 5524 2.906897 ATATTTGGGCGGCAGCGG 60.907 61.111 12.47 0.00 46.35 5.52
4548 5525 2.639286 GATATTTGGGCGGCAGCG 59.361 61.111 12.47 0.00 46.35 5.18
4549 5526 2.186826 ACGATATTTGGGCGGCAGC 61.187 57.895 12.47 0.00 44.18 5.25
4550 5527 1.648720 CACGATATTTGGGCGGCAG 59.351 57.895 12.47 0.00 0.00 4.85
4551 5528 1.821759 CCACGATATTTGGGCGGCA 60.822 57.895 12.47 0.00 0.00 5.69
4552 5529 3.030652 CCACGATATTTGGGCGGC 58.969 61.111 0.00 0.00 0.00 6.53
4553 5530 3.030652 GCCACGATATTTGGGCGG 58.969 61.111 6.47 0.00 36.58 6.13
4555 5532 1.092921 TCACGCCACGATATTTGGGC 61.093 55.000 6.47 4.83 42.98 5.36
4556 5533 0.937304 CTCACGCCACGATATTTGGG 59.063 55.000 6.47 0.00 34.35 4.12
4557 5534 0.937304 CCTCACGCCACGATATTTGG 59.063 55.000 0.00 0.75 37.17 3.28
4558 5535 1.934589 TCCTCACGCCACGATATTTG 58.065 50.000 0.00 0.00 0.00 2.32
4559 5536 2.483876 CATCCTCACGCCACGATATTT 58.516 47.619 0.00 0.00 0.00 1.40
4560 5537 1.873903 GCATCCTCACGCCACGATATT 60.874 52.381 0.00 0.00 0.00 1.28
4561 5538 0.319900 GCATCCTCACGCCACGATAT 60.320 55.000 0.00 0.00 0.00 1.63
4562 5539 1.067416 GCATCCTCACGCCACGATA 59.933 57.895 0.00 0.00 0.00 2.92
4563 5540 2.202932 GCATCCTCACGCCACGAT 60.203 61.111 0.00 0.00 0.00 3.73
4564 5541 4.794439 CGCATCCTCACGCCACGA 62.794 66.667 0.00 0.00 0.00 4.35
4570 5547 3.274586 CATGGCCGCATCCTCACG 61.275 66.667 0.00 0.00 0.00 4.35
4571 5548 2.903855 CCATGGCCGCATCCTCAC 60.904 66.667 0.00 0.00 0.00 3.51
4572 5549 4.193893 CCCATGGCCGCATCCTCA 62.194 66.667 6.09 0.00 0.00 3.86
4573 5550 4.962836 CCCCATGGCCGCATCCTC 62.963 72.222 6.09 0.00 0.00 3.71
4585 5562 1.991167 CTTTGCCCATGTGCCCCAT 60.991 57.895 0.00 0.00 0.00 4.00
4586 5563 2.604079 CTTTGCCCATGTGCCCCA 60.604 61.111 0.00 0.00 0.00 4.96
4587 5564 1.891722 CTTCTTTGCCCATGTGCCCC 61.892 60.000 0.00 0.00 0.00 5.80
4588 5565 0.899717 TCTTCTTTGCCCATGTGCCC 60.900 55.000 0.00 0.00 0.00 5.36
4589 5566 1.135721 GATCTTCTTTGCCCATGTGCC 59.864 52.381 0.00 0.00 0.00 5.01
4590 5567 1.135721 GGATCTTCTTTGCCCATGTGC 59.864 52.381 0.00 0.00 0.00 4.57
4591 5568 1.402968 CGGATCTTCTTTGCCCATGTG 59.597 52.381 0.00 0.00 0.00 3.21
4592 5569 1.004745 ACGGATCTTCTTTGCCCATGT 59.995 47.619 0.00 0.00 0.00 3.21
4593 5570 1.755179 ACGGATCTTCTTTGCCCATG 58.245 50.000 0.00 0.00 0.00 3.66
4594 5571 3.644966 TTACGGATCTTCTTTGCCCAT 57.355 42.857 0.00 0.00 0.00 4.00
4595 5572 3.644966 ATTACGGATCTTCTTTGCCCA 57.355 42.857 0.00 0.00 0.00 5.36
4596 5573 4.455877 CCATATTACGGATCTTCTTTGCCC 59.544 45.833 0.00 0.00 0.00 5.36
4597 5574 5.179555 GTCCATATTACGGATCTTCTTTGCC 59.820 44.000 0.00 0.00 34.32 4.52
4598 5575 5.758296 TGTCCATATTACGGATCTTCTTTGC 59.242 40.000 0.00 0.00 34.32 3.68
4599 5576 6.074302 CGTGTCCATATTACGGATCTTCTTTG 60.074 42.308 0.00 0.00 34.32 2.77
4600 5577 5.983720 CGTGTCCATATTACGGATCTTCTTT 59.016 40.000 0.00 0.00 34.32 2.52
4601 5578 5.529791 CGTGTCCATATTACGGATCTTCTT 58.470 41.667 0.00 0.00 34.32 2.52
4602 5579 4.558898 GCGTGTCCATATTACGGATCTTCT 60.559 45.833 0.00 0.00 38.20 2.85
4603 5580 3.673809 GCGTGTCCATATTACGGATCTTC 59.326 47.826 0.00 0.00 38.20 2.87
4604 5581 3.650139 GCGTGTCCATATTACGGATCTT 58.350 45.455 0.00 0.00 38.20 2.40
4605 5582 2.351447 CGCGTGTCCATATTACGGATCT 60.351 50.000 0.00 0.00 38.20 2.75
4606 5583 1.983605 CGCGTGTCCATATTACGGATC 59.016 52.381 0.00 0.00 38.20 3.36
4607 5584 1.610038 TCGCGTGTCCATATTACGGAT 59.390 47.619 5.77 0.00 38.20 4.18
4608 5585 1.002142 CTCGCGTGTCCATATTACGGA 60.002 52.381 5.77 0.00 38.20 4.69
4609 5586 1.002142 TCTCGCGTGTCCATATTACGG 60.002 52.381 5.77 0.00 38.20 4.02
4610 5587 2.394545 TCTCGCGTGTCCATATTACG 57.605 50.000 5.77 0.00 40.52 3.18
4611 5588 3.441163 TGTTCTCGCGTGTCCATATTAC 58.559 45.455 5.77 0.00 0.00 1.89
4612 5589 3.786516 TGTTCTCGCGTGTCCATATTA 57.213 42.857 5.77 0.00 0.00 0.98
4613 5590 2.665649 TGTTCTCGCGTGTCCATATT 57.334 45.000 5.77 0.00 0.00 1.28
4614 5591 2.159099 ACATGTTCTCGCGTGTCCATAT 60.159 45.455 5.77 0.00 33.77 1.78
4615 5592 1.203758 ACATGTTCTCGCGTGTCCATA 59.796 47.619 5.77 0.00 33.77 2.74
4616 5593 0.037326 ACATGTTCTCGCGTGTCCAT 60.037 50.000 5.77 7.69 33.77 3.41
4617 5594 0.943835 CACATGTTCTCGCGTGTCCA 60.944 55.000 5.77 5.50 36.56 4.02
4618 5595 0.944311 ACACATGTTCTCGCGTGTCC 60.944 55.000 5.77 0.00 38.13 4.02
4619 5596 0.161658 CACACATGTTCTCGCGTGTC 59.838 55.000 5.77 2.65 40.49 3.67
4620 5597 1.221466 CCACACATGTTCTCGCGTGT 61.221 55.000 5.77 0.00 43.12 4.49
4621 5598 1.492873 CCACACATGTTCTCGCGTG 59.507 57.895 5.77 3.13 35.48 5.34
4622 5599 2.317609 GCCACACATGTTCTCGCGT 61.318 57.895 5.77 0.00 0.00 6.01
4623 5600 1.568612 AAGCCACACATGTTCTCGCG 61.569 55.000 0.00 0.00 0.00 5.87
4624 5601 0.110056 CAAGCCACACATGTTCTCGC 60.110 55.000 0.00 0.00 0.00 5.03
4625 5602 0.518636 CCAAGCCACACATGTTCTCG 59.481 55.000 0.00 0.00 0.00 4.04
4626 5603 0.242017 GCCAAGCCACACATGTTCTC 59.758 55.000 0.00 0.00 0.00 2.87
4627 5604 0.467844 TGCCAAGCCACACATGTTCT 60.468 50.000 0.00 0.00 0.00 3.01
4628 5605 0.318955 GTGCCAAGCCACACATGTTC 60.319 55.000 0.00 0.00 36.77 3.18
4629 5606 1.042003 TGTGCCAAGCCACACATGTT 61.042 50.000 0.00 0.00 41.67 2.71
4630 5607 1.455402 TGTGCCAAGCCACACATGT 60.455 52.632 0.00 0.00 41.67 3.21
4631 5608 3.445888 TGTGCCAAGCCACACATG 58.554 55.556 0.00 0.00 41.67 3.21
4636 5613 2.126346 GCGAATGTGCCAAGCCAC 60.126 61.111 0.00 0.00 36.28 5.01
4644 5621 0.110056 CTTCACAGTGGCGAATGTGC 60.110 55.000 22.25 0.00 45.12 4.57
4645 5622 0.518636 CCTTCACAGTGGCGAATGTG 59.481 55.000 21.25 21.25 46.52 3.21
4646 5623 0.396435 TCCTTCACAGTGGCGAATGT 59.604 50.000 0.00 0.00 0.00 2.71
4647 5624 1.081892 CTCCTTCACAGTGGCGAATG 58.918 55.000 0.00 0.00 0.00 2.67
4648 5625 0.687354 ACTCCTTCACAGTGGCGAAT 59.313 50.000 0.00 0.00 0.00 3.34
4649 5626 0.468226 AACTCCTTCACAGTGGCGAA 59.532 50.000 0.00 0.00 0.00 4.70
4650 5627 0.249868 CAACTCCTTCACAGTGGCGA 60.250 55.000 0.00 0.00 0.00 5.54
4651 5628 1.230635 CCAACTCCTTCACAGTGGCG 61.231 60.000 0.00 0.00 0.00 5.69
4652 5629 0.179018 ACCAACTCCTTCACAGTGGC 60.179 55.000 0.00 0.00 0.00 5.01
4653 5630 1.597742 CACCAACTCCTTCACAGTGG 58.402 55.000 0.00 0.00 0.00 4.00
4654 5631 0.947244 GCACCAACTCCTTCACAGTG 59.053 55.000 0.00 0.00 0.00 3.66
4655 5632 0.532862 CGCACCAACTCCTTCACAGT 60.533 55.000 0.00 0.00 0.00 3.55
4656 5633 1.845809 GCGCACCAACTCCTTCACAG 61.846 60.000 0.30 0.00 0.00 3.66
4657 5634 1.891919 GCGCACCAACTCCTTCACA 60.892 57.895 0.30 0.00 0.00 3.58
4658 5635 2.946762 GCGCACCAACTCCTTCAC 59.053 61.111 0.30 0.00 0.00 3.18
4659 5636 2.664851 CGCGCACCAACTCCTTCA 60.665 61.111 8.75 0.00 0.00 3.02
4660 5637 4.090057 GCGCGCACCAACTCCTTC 62.090 66.667 29.10 0.00 0.00 3.46
4663 5640 4.752879 TAGGCGCGCACCAACTCC 62.753 66.667 34.42 12.85 0.00 3.85
4664 5641 3.488090 GTAGGCGCGCACCAACTC 61.488 66.667 34.42 13.69 0.00 3.01
4667 5644 4.444838 ATCGTAGGCGCGCACCAA 62.445 61.111 34.42 14.19 38.14 3.67
4678 5655 4.873129 AGCGCCGTGGCATCGTAG 62.873 66.667 12.06 0.00 42.06 3.51
4679 5656 4.444838 AAGCGCCGTGGCATCGTA 62.445 61.111 12.06 0.00 42.06 3.43
4694 5671 2.482142 CCTAGCTCCCAAAGTAGCGAAG 60.482 54.545 0.00 0.00 43.63 3.79
4695 5672 1.480954 CCTAGCTCCCAAAGTAGCGAA 59.519 52.381 0.00 0.00 43.63 4.70
4696 5673 1.112113 CCTAGCTCCCAAAGTAGCGA 58.888 55.000 0.00 0.00 43.63 4.93
4697 5674 0.530870 GCCTAGCTCCCAAAGTAGCG 60.531 60.000 0.00 0.00 43.63 4.26
4698 5675 0.833949 AGCCTAGCTCCCAAAGTAGC 59.166 55.000 0.00 0.00 30.62 3.58
4699 5676 3.493524 GCTTAGCCTAGCTCCCAAAGTAG 60.494 52.174 0.00 0.00 40.44 2.57
4700 5677 2.434702 GCTTAGCCTAGCTCCCAAAGTA 59.565 50.000 0.00 0.00 40.44 2.24
4701 5678 1.210722 GCTTAGCCTAGCTCCCAAAGT 59.789 52.381 0.00 0.00 40.44 2.66
4702 5679 1.960417 GCTTAGCCTAGCTCCCAAAG 58.040 55.000 0.00 0.00 40.44 2.77
4710 5687 2.556257 GGAAGTTGAGCTTAGCCTAGC 58.444 52.381 0.00 0.00 41.53 3.42
4711 5688 2.158885 GGGGAAGTTGAGCTTAGCCTAG 60.159 54.545 0.00 0.00 37.59 3.02
4712 5689 1.838077 GGGGAAGTTGAGCTTAGCCTA 59.162 52.381 0.00 0.00 37.59 3.93
4713 5690 0.621082 GGGGAAGTTGAGCTTAGCCT 59.379 55.000 0.00 0.00 37.59 4.58
4714 5691 0.328258 TGGGGAAGTTGAGCTTAGCC 59.672 55.000 0.00 0.00 37.59 3.93
4715 5692 2.293170 GATGGGGAAGTTGAGCTTAGC 58.707 52.381 0.00 0.00 37.59 3.09
4716 5693 2.168521 TCGATGGGGAAGTTGAGCTTAG 59.831 50.000 0.00 0.00 37.59 2.18
4717 5694 2.093658 GTCGATGGGGAAGTTGAGCTTA 60.094 50.000 0.00 0.00 37.59 3.09
4718 5695 0.984230 TCGATGGGGAAGTTGAGCTT 59.016 50.000 0.00 0.00 40.76 3.74
4719 5696 0.250513 GTCGATGGGGAAGTTGAGCT 59.749 55.000 0.00 0.00 0.00 4.09
4720 5697 1.084370 CGTCGATGGGGAAGTTGAGC 61.084 60.000 0.00 0.00 0.00 4.26
4721 5698 0.246635 ACGTCGATGGGGAAGTTGAG 59.753 55.000 9.90 0.00 0.00 3.02
4722 5699 0.682852 AACGTCGATGGGGAAGTTGA 59.317 50.000 9.90 0.00 37.27 3.18
4723 5700 1.076332 GAACGTCGATGGGGAAGTTG 58.924 55.000 9.90 0.00 38.45 3.16
4724 5701 0.036671 GGAACGTCGATGGGGAAGTT 60.037 55.000 9.90 0.00 40.50 2.66
4725 5702 1.595357 GGAACGTCGATGGGGAAGT 59.405 57.895 9.90 0.00 0.00 3.01
4726 5703 4.515404 GGAACGTCGATGGGGAAG 57.485 61.111 9.90 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.