Multiple sequence alignment - TraesCS4D01G289700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G289700 chr4D 100.000 2690 0 0 1 2690 460778306 460775617 0.000000e+00 4968
1 TraesCS4D01G289700 chr4D 80.529 945 150 23 720 1650 460986582 460987506 0.000000e+00 695
2 TraesCS4D01G289700 chr4A 91.507 2084 110 19 1 2076 7574143 7576167 0.000000e+00 2806
3 TraesCS4D01G289700 chr4A 80.251 876 139 23 721 1582 7442026 7441171 1.760000e-176 628
4 TraesCS4D01G289700 chr4A 93.500 400 20 5 2090 2487 7576153 7576548 8.290000e-165 590
5 TraesCS4D01G289700 chr4A 98.387 62 0 1 2577 2637 7576670 7576731 1.020000e-19 108
6 TraesCS4D01G289700 chr4A 89.873 79 7 1 2490 2567 7576602 7576680 1.700000e-17 100
7 TraesCS4D01G289700 chr4B 94.946 554 19 8 2090 2637 575380834 575381384 0.000000e+00 859
8 TraesCS4D01G289700 chr4B 92.188 512 32 3 1 511 575336839 575337343 0.000000e+00 717
9 TraesCS4D01G289700 chr4B 91.456 515 34 5 678 1191 575361670 575362175 0.000000e+00 699
10 TraesCS4D01G289700 chr4B 90.805 522 48 0 1191 1712 575371393 575371914 0.000000e+00 699
11 TraesCS4D01G289700 chr4B 80.747 883 138 22 993 1853 576166907 576167779 0.000000e+00 660
12 TraesCS4D01G289700 chr4B 95.095 367 16 1 1710 2076 575380484 575380848 6.460000e-161 577
13 TraesCS4D01G289700 chr4B 80.723 249 42 6 212 456 265911427 265911181 3.540000e-44 189
14 TraesCS4D01G289700 chr4B 79.848 263 46 7 210 467 277811255 277811515 4.570000e-43 185
15 TraesCS4D01G289700 chr4B 78.967 271 50 7 212 477 228594570 228594302 7.650000e-41 178
16 TraesCS4D01G289700 chr7B 80.392 255 43 7 207 456 137261655 137261907 1.270000e-43 187
17 TraesCS4D01G289700 chr7B 80.478 251 41 8 211 456 372681458 372681211 4.570000e-43 185
18 TraesCS4D01G289700 chr7B 77.258 299 60 8 192 485 83539302 83539597 4.610000e-38 169
19 TraesCS4D01G289700 chr6B 79.693 261 45 8 212 467 281153804 281153547 5.920000e-42 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G289700 chr4D 460775617 460778306 2689 True 4968 4968 100.00000 1 2690 1 chr4D.!!$R1 2689
1 TraesCS4D01G289700 chr4D 460986582 460987506 924 False 695 695 80.52900 720 1650 1 chr4D.!!$F1 930
2 TraesCS4D01G289700 chr4A 7574143 7576731 2588 False 901 2806 93.31675 1 2637 4 chr4A.!!$F1 2636
3 TraesCS4D01G289700 chr4A 7441171 7442026 855 True 628 628 80.25100 721 1582 1 chr4A.!!$R1 861
4 TraesCS4D01G289700 chr4B 575380484 575381384 900 False 718 859 95.02050 1710 2637 2 chr4B.!!$F6 927
5 TraesCS4D01G289700 chr4B 575336839 575337343 504 False 717 717 92.18800 1 511 1 chr4B.!!$F2 510
6 TraesCS4D01G289700 chr4B 575361670 575362175 505 False 699 699 91.45600 678 1191 1 chr4B.!!$F3 513
7 TraesCS4D01G289700 chr4B 575371393 575371914 521 False 699 699 90.80500 1191 1712 1 chr4B.!!$F4 521
8 TraesCS4D01G289700 chr4B 576166907 576167779 872 False 660 660 80.74700 993 1853 1 chr4B.!!$F5 860

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
933 945 0.528901 GTACGGTGCAGTGTGACACA 60.529 55.0 18.95 3.56 38.57 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2273 2336 0.251787 GACCTGTCCTGGCCCAAAAT 60.252 55.0 0.0 0.0 0.0 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 68 9.929180 ATTTTTCTCCTTTTCTAATGGCTTAAC 57.071 29.630 0.00 0.00 0.00 2.01
68 70 9.802039 TTTTCTCCTTTTCTAATGGCTTAACTA 57.198 29.630 0.00 0.00 0.00 2.24
70 72 9.975218 TTCTCCTTTTCTAATGGCTTAACTATT 57.025 29.630 0.00 0.00 33.46 1.73
74 76 7.255139 CCTTTTCTAATGGCTTAACTATTCCCG 60.255 40.741 0.00 0.00 31.07 5.14
124 126 5.617751 GCGTGCATCTCACTTTCTACAAAAT 60.618 40.000 0.00 0.00 43.46 1.82
257 260 9.936759 AACAAGTTGGATTAGTTTTCAAAAAGA 57.063 25.926 7.96 0.00 0.00 2.52
280 283 7.493367 AGATAATCTTCTCTAACTTTGACCGG 58.507 38.462 0.00 0.00 0.00 5.28
472 477 2.791347 TTTTAGCATGGAGGCGGTAA 57.209 45.000 0.00 0.00 39.27 2.85
543 548 4.716003 GGTGTAGGACTTGCACCC 57.284 61.111 13.03 0.00 44.95 4.61
563 568 2.357050 CCTGATGGGCCAGTTCACAATA 60.357 50.000 13.78 0.00 32.43 1.90
564 569 3.559069 CTGATGGGCCAGTTCACAATAT 58.441 45.455 13.78 0.00 0.00 1.28
565 570 4.446167 CCTGATGGGCCAGTTCACAATATA 60.446 45.833 13.78 0.00 32.43 0.86
566 571 5.319453 CTGATGGGCCAGTTCACAATATAT 58.681 41.667 13.78 0.00 0.00 0.86
567 572 6.446909 TGATGGGCCAGTTCACAATATATA 57.553 37.500 13.78 0.00 0.00 0.86
568 573 6.846988 TGATGGGCCAGTTCACAATATATAA 58.153 36.000 13.78 0.00 0.00 0.98
569 574 7.469343 TGATGGGCCAGTTCACAATATATAAT 58.531 34.615 13.78 0.00 0.00 1.28
570 575 8.610369 TGATGGGCCAGTTCACAATATATAATA 58.390 33.333 13.78 0.00 0.00 0.98
571 576 9.632638 GATGGGCCAGTTCACAATATATAATAT 57.367 33.333 13.78 0.00 0.00 1.28
624 629 5.432390 TGGTAGTTCTATCTAGTCAGGTCCT 59.568 44.000 0.00 0.00 0.00 3.85
633 638 5.006896 TCTAGTCAGGTCCTTTAGGTTGA 57.993 43.478 0.00 0.00 36.34 3.18
652 657 5.934625 GGTTGAACACTTGAGATCACTACAT 59.065 40.000 0.00 0.00 0.00 2.29
656 661 5.336150 ACACTTGAGATCACTACATCCAG 57.664 43.478 0.00 0.00 0.00 3.86
872 884 2.068519 GGGGTCGGTACACGTAAAAAG 58.931 52.381 0.00 0.00 44.69 2.27
879 891 2.031769 GGTACACGTAAAAAGGGTGCAC 60.032 50.000 8.80 8.80 35.11 4.57
933 945 0.528901 GTACGGTGCAGTGTGACACA 60.529 55.000 18.95 3.56 38.57 3.72
960 972 4.500205 CCGAGATTGGCATTTGCATGTAAT 60.500 41.667 4.74 0.00 44.36 1.89
1165 1206 0.524862 ACCGCAAGTCTACTACCACG 59.475 55.000 0.00 0.00 0.00 4.94
1481 1522 1.463674 GGCTTCGATGGGTTTGTCAT 58.536 50.000 0.00 0.00 0.00 3.06
1608 1649 2.031314 TTTAGGACCGCGCTTGCA 59.969 55.556 5.56 0.00 39.07 4.08
1668 1709 4.468689 GCCCTAGGGTGCGACCAC 62.469 72.222 28.96 5.84 41.02 4.16
1797 1847 5.273944 ACGAGCAATGAAACTTTGAACTTC 58.726 37.500 0.00 0.00 0.00 3.01
1842 1905 5.346822 GTCAACTATTGCTTCAGCCAAAATG 59.653 40.000 0.00 0.00 41.18 2.32
1944 2007 0.468771 AGCTCTTGGCAGCAGGTTTT 60.469 50.000 0.00 0.00 42.40 2.43
1978 2041 1.202722 TCAACTCGTTGTCCCCTTTCC 60.203 52.381 9.38 0.00 41.16 3.13
1986 2049 0.178846 TGTCCCCTTTCCCTCCATCA 60.179 55.000 0.00 0.00 0.00 3.07
1987 2050 0.999712 GTCCCCTTTCCCTCCATCAA 59.000 55.000 0.00 0.00 0.00 2.57
2041 2104 7.094162 TGTGTAATGAACTGAAACTTTGGACAA 60.094 33.333 0.00 0.00 0.00 3.18
2074 2137 7.784470 TTTAGTTAAGCAATTAATGGTGGGT 57.216 32.000 0.00 0.00 40.33 4.51
2075 2138 7.784470 TTAGTTAAGCAATTAATGGTGGGTT 57.216 32.000 0.00 0.00 40.33 4.11
2076 2139 6.280855 AGTTAAGCAATTAATGGTGGGTTC 57.719 37.500 0.00 0.00 40.33 3.62
2077 2140 5.186992 AGTTAAGCAATTAATGGTGGGTTCC 59.813 40.000 0.00 0.00 40.33 3.62
2078 2141 3.473113 AGCAATTAATGGTGGGTTCCT 57.527 42.857 0.00 0.00 38.62 3.36
2079 2142 3.790126 AGCAATTAATGGTGGGTTCCTT 58.210 40.909 0.00 0.00 38.62 3.36
2080 2143 4.167319 AGCAATTAATGGTGGGTTCCTTT 58.833 39.130 0.00 0.00 38.62 3.11
2081 2144 4.597075 AGCAATTAATGGTGGGTTCCTTTT 59.403 37.500 0.00 0.00 38.62 2.27
2082 2145 4.935205 GCAATTAATGGTGGGTTCCTTTTC 59.065 41.667 0.00 0.00 0.00 2.29
2083 2146 5.167845 CAATTAATGGTGGGTTCCTTTTCG 58.832 41.667 0.00 0.00 0.00 3.46
2084 2147 2.668144 AATGGTGGGTTCCTTTTCGA 57.332 45.000 0.00 0.00 0.00 3.71
2085 2148 2.668144 ATGGTGGGTTCCTTTTCGAA 57.332 45.000 0.00 0.00 0.00 3.71
2086 2149 2.438800 TGGTGGGTTCCTTTTCGAAA 57.561 45.000 6.47 6.47 0.00 3.46
2087 2150 2.736347 TGGTGGGTTCCTTTTCGAAAA 58.264 42.857 21.35 21.35 0.00 2.29
2088 2151 3.097614 TGGTGGGTTCCTTTTCGAAAAA 58.902 40.909 22.67 7.78 0.00 1.94
2194 2257 2.076863 CAGTTTTCTACTCCAAGCCCG 58.923 52.381 0.00 0.00 33.85 6.13
2217 2280 7.254932 CCCGCCTCACAATTTTTAATTTCAAAA 60.255 33.333 0.00 0.00 0.00 2.44
2330 2393 5.959618 ATTTACAGACTGGGCTGTTTAAC 57.040 39.130 14.61 0.00 46.42 2.01
2474 2537 2.436646 CCTTCGTGGCGGCATCTT 60.437 61.111 17.19 0.00 0.00 2.40
2560 2699 0.824109 TCTGGCGGTATCCTGACAAG 59.176 55.000 0.00 0.00 0.00 3.16
2561 2700 0.179073 CTGGCGGTATCCTGACAAGG 60.179 60.000 0.00 0.00 46.06 3.61
2562 2701 0.907704 TGGCGGTATCCTGACAAGGT 60.908 55.000 0.00 0.00 44.82 3.50
2563 2702 0.179081 GGCGGTATCCTGACAAGGTC 60.179 60.000 0.00 0.00 44.82 3.85
2564 2703 0.824759 GCGGTATCCTGACAAGGTCT 59.175 55.000 0.00 0.00 44.82 3.85
2565 2704 1.207329 GCGGTATCCTGACAAGGTCTT 59.793 52.381 0.00 0.00 44.82 3.01
2566 2705 2.738964 GCGGTATCCTGACAAGGTCTTC 60.739 54.545 0.00 0.00 44.82 2.87
2567 2706 2.496070 CGGTATCCTGACAAGGTCTTCA 59.504 50.000 0.00 0.00 44.82 3.02
2568 2707 3.133003 CGGTATCCTGACAAGGTCTTCAT 59.867 47.826 0.00 0.00 44.82 2.57
2569 2708 4.341235 CGGTATCCTGACAAGGTCTTCATA 59.659 45.833 0.00 0.00 44.82 2.15
2570 2709 5.163447 CGGTATCCTGACAAGGTCTTCATAA 60.163 44.000 0.00 0.00 44.82 1.90
2571 2710 6.629515 CGGTATCCTGACAAGGTCTTCATAAA 60.630 42.308 0.00 0.00 44.82 1.40
2572 2711 7.110155 GGTATCCTGACAAGGTCTTCATAAAA 58.890 38.462 0.00 0.00 44.82 1.52
2573 2712 7.610305 GGTATCCTGACAAGGTCTTCATAAAAA 59.390 37.037 0.00 0.00 44.82 1.94
2633 2772 5.934625 GCAAGAGAGTGTGGAGAGATAAAAA 59.065 40.000 0.00 0.00 0.00 1.94
2657 2796 8.942338 AAAAAGAGTGAATTCTGGTTTTTACC 57.058 30.769 7.05 0.00 0.00 2.85
2658 2797 6.650427 AAGAGTGAATTCTGGTTTTTACCC 57.350 37.500 7.05 0.00 0.00 3.69
2659 2798 5.077564 AGAGTGAATTCTGGTTTTTACCCC 58.922 41.667 7.05 0.00 0.00 4.95
2660 2799 3.824443 AGTGAATTCTGGTTTTTACCCCG 59.176 43.478 7.05 0.00 0.00 5.73
2661 2800 3.822167 GTGAATTCTGGTTTTTACCCCGA 59.178 43.478 7.05 0.00 0.00 5.14
2662 2801 4.461431 GTGAATTCTGGTTTTTACCCCGAT 59.539 41.667 7.05 0.00 0.00 4.18
2663 2802 4.703093 TGAATTCTGGTTTTTACCCCGATC 59.297 41.667 7.05 0.00 0.00 3.69
2664 2803 3.791953 TTCTGGTTTTTACCCCGATCA 57.208 42.857 0.00 0.00 0.00 2.92
2665 2804 4.310022 TTCTGGTTTTTACCCCGATCAT 57.690 40.909 0.00 0.00 0.00 2.45
2666 2805 3.616219 TCTGGTTTTTACCCCGATCATG 58.384 45.455 0.00 0.00 0.00 3.07
2667 2806 3.264706 TCTGGTTTTTACCCCGATCATGA 59.735 43.478 0.00 0.00 0.00 3.07
2668 2807 3.349022 TGGTTTTTACCCCGATCATGAC 58.651 45.455 0.00 0.00 0.00 3.06
2669 2808 3.244946 TGGTTTTTACCCCGATCATGACA 60.245 43.478 0.00 0.00 0.00 3.58
2670 2809 3.951680 GGTTTTTACCCCGATCATGACAT 59.048 43.478 0.00 0.00 0.00 3.06
2671 2810 4.401202 GGTTTTTACCCCGATCATGACATT 59.599 41.667 0.00 0.00 0.00 2.71
2672 2811 5.105513 GGTTTTTACCCCGATCATGACATTT 60.106 40.000 0.00 0.00 0.00 2.32
2673 2812 6.394809 GTTTTTACCCCGATCATGACATTTT 58.605 36.000 0.00 0.00 0.00 1.82
2674 2813 6.597832 TTTTACCCCGATCATGACATTTTT 57.402 33.333 0.00 0.00 0.00 1.94
2675 2814 7.704578 TTTTACCCCGATCATGACATTTTTA 57.295 32.000 0.00 0.00 0.00 1.52
2676 2815 6.687081 TTACCCCGATCATGACATTTTTAC 57.313 37.500 0.00 0.00 0.00 2.01
2677 2816 4.594970 ACCCCGATCATGACATTTTTACA 58.405 39.130 0.00 0.00 0.00 2.41
2678 2817 4.398044 ACCCCGATCATGACATTTTTACAC 59.602 41.667 0.00 0.00 0.00 2.90
2679 2818 4.640201 CCCCGATCATGACATTTTTACACT 59.360 41.667 0.00 0.00 0.00 3.55
2680 2819 5.820423 CCCCGATCATGACATTTTTACACTA 59.180 40.000 0.00 0.00 0.00 2.74
2681 2820 6.317642 CCCCGATCATGACATTTTTACACTAA 59.682 38.462 0.00 0.00 0.00 2.24
2682 2821 7.013274 CCCCGATCATGACATTTTTACACTAAT 59.987 37.037 0.00 0.00 0.00 1.73
2683 2822 8.405531 CCCGATCATGACATTTTTACACTAATT 58.594 33.333 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 70 7.994334 TGGCTTTTAAGTTACATATACGGGAAT 59.006 33.333 0.00 0.00 0.00 3.01
70 72 6.887013 TGGCTTTTAAGTTACATATACGGGA 58.113 36.000 0.00 0.00 0.00 5.14
150 152 6.597672 GCATTCCCAAACTAAAAATTTAGGGG 59.402 38.462 15.32 14.97 43.38 4.79
151 153 7.164803 TGCATTCCCAAACTAAAAATTTAGGG 58.835 34.615 15.32 8.99 43.38 3.53
152 154 8.614469 TTGCATTCCCAAACTAAAAATTTAGG 57.386 30.769 15.32 1.12 43.38 2.69
163 165 1.422531 TGCCTTTGCATTCCCAAACT 58.577 45.000 0.00 0.00 44.23 2.66
257 260 6.156429 ACCCGGTCAAAGTTAGAGAAGATTAT 59.844 38.462 0.00 0.00 0.00 1.28
280 283 9.750125 GACATCAATATTTTTCTCCCATAAACC 57.250 33.333 0.00 0.00 0.00 3.27
543 548 1.843368 ATTGTGAACTGGCCCATCAG 58.157 50.000 0.00 0.00 40.40 2.90
602 607 7.885009 AAAGGACCTGACTAGATAGAACTAC 57.115 40.000 0.00 0.00 0.00 2.73
624 629 6.591935 AGTGATCTCAAGTGTTCAACCTAAA 58.408 36.000 0.00 0.00 0.00 1.85
633 638 5.337894 CCTGGATGTAGTGATCTCAAGTGTT 60.338 44.000 0.00 0.00 0.00 3.32
652 657 0.036164 CCAACCAACGATGTCCTGGA 59.964 55.000 0.00 0.00 34.16 3.86
656 661 0.872388 GACACCAACCAACGATGTCC 59.128 55.000 0.00 0.00 34.83 4.02
754 765 6.816136 TGTCGTACCATGACATGATTTAGAT 58.184 36.000 17.24 0.00 39.05 1.98
755 766 6.215495 TGTCGTACCATGACATGATTTAGA 57.785 37.500 17.24 6.72 39.05 2.10
756 767 6.902224 TTGTCGTACCATGACATGATTTAG 57.098 37.500 17.24 2.17 43.00 1.85
757 768 6.092944 GGTTTGTCGTACCATGACATGATTTA 59.907 38.462 17.24 2.54 43.00 1.40
758 769 5.106317 GGTTTGTCGTACCATGACATGATTT 60.106 40.000 17.24 3.48 43.00 2.17
759 770 4.394920 GGTTTGTCGTACCATGACATGATT 59.605 41.667 17.24 5.93 43.00 2.57
760 771 3.938963 GGTTTGTCGTACCATGACATGAT 59.061 43.478 17.24 1.47 43.00 2.45
872 884 0.467290 TTTCCACTCCTTGTGCACCC 60.467 55.000 15.69 0.00 44.92 4.61
879 891 5.347907 GTCGTGTAGTATTTTCCACTCCTTG 59.652 44.000 0.00 0.00 0.00 3.61
984 1020 9.875691 TCTGCATACATAGATTGATATACCAAC 57.124 33.333 0.00 0.00 0.00 3.77
995 1035 6.338214 AGATCGTGTCTGCATACATAGATT 57.662 37.500 19.44 11.45 35.31 2.40
1386 1427 3.243873 CGTTCTCATTATAGGGCAGCTCA 60.244 47.826 0.00 0.00 0.00 4.26
1470 1511 2.692709 AATGGTCCATGACAAACCCA 57.307 45.000 4.74 0.00 33.68 4.51
1508 1549 4.409588 CGCACGTTTCGAGCACGG 62.410 66.667 19.66 11.62 42.97 4.94
1608 1649 1.547372 GTGAGCTTGGGCATGACATTT 59.453 47.619 0.00 0.00 41.70 2.32
1655 1696 2.920384 TGCAGTGGTCGCACCCTA 60.920 61.111 0.00 0.00 37.50 3.53
1668 1709 1.538047 AATGCTTGGTGGTAGTGCAG 58.462 50.000 0.00 0.00 37.07 4.41
1770 1820 5.591643 TCAAAGTTTCATTGCTCGTAGTC 57.408 39.130 0.00 0.00 0.00 2.59
1797 1847 1.135199 ACATACTGTCTGCCGGTTACG 60.135 52.381 1.90 0.00 40.55 3.18
1944 2007 3.181469 ACGAGTTGAAACAGTAGCAGGAA 60.181 43.478 0.00 0.00 0.00 3.36
1978 2041 6.040166 AGCTAACAAGCAATAATTGATGGAGG 59.960 38.462 0.00 0.00 37.25 4.30
2053 2116 5.186992 GGAACCCACCATTAATTGCTTAACT 59.813 40.000 0.00 0.00 29.85 2.24
2068 2131 3.804786 TTTTTCGAAAAGGAACCCACC 57.195 42.857 21.53 0.00 0.00 4.61
2093 2156 7.986889 GCTGATATTATTTTTCAACCCACCATT 59.013 33.333 0.00 0.00 0.00 3.16
2094 2157 7.125507 TGCTGATATTATTTTTCAACCCACCAT 59.874 33.333 0.00 0.00 0.00 3.55
2095 2158 6.438741 TGCTGATATTATTTTTCAACCCACCA 59.561 34.615 0.00 0.00 0.00 4.17
2110 2173 7.716560 AGCAATAGTTCACACATGCTGATATTA 59.283 33.333 0.00 0.00 37.86 0.98
2273 2336 0.251787 GACCTGTCCTGGCCCAAAAT 60.252 55.000 0.00 0.00 0.00 1.82
2330 2393 1.890174 GGGAATTTTGGGCCAGACG 59.110 57.895 6.23 0.00 0.00 4.18
2416 2479 4.188247 TGTGGTGAAAGGAGTAAGATCG 57.812 45.455 0.00 0.00 0.00 3.69
2474 2537 3.719268 AGCACTCCACATTTATCCACA 57.281 42.857 0.00 0.00 0.00 4.17
2633 2772 7.418597 GGGGTAAAAACCAGAATTCACTCTTTT 60.419 37.037 8.44 10.06 0.00 2.27
2637 2776 4.082949 CGGGGTAAAAACCAGAATTCACTC 60.083 45.833 8.44 0.00 0.00 3.51
2638 2777 3.824443 CGGGGTAAAAACCAGAATTCACT 59.176 43.478 8.44 0.00 0.00 3.41
2639 2778 3.822167 TCGGGGTAAAAACCAGAATTCAC 59.178 43.478 8.44 0.00 0.00 3.18
2640 2779 4.101645 TCGGGGTAAAAACCAGAATTCA 57.898 40.909 8.44 0.00 0.00 2.57
2641 2780 4.703093 TGATCGGGGTAAAAACCAGAATTC 59.297 41.667 0.00 0.00 35.85 2.17
2642 2781 4.668636 TGATCGGGGTAAAAACCAGAATT 58.331 39.130 0.00 0.00 35.85 2.17
2643 2782 4.310022 TGATCGGGGTAAAAACCAGAAT 57.690 40.909 0.00 0.00 35.85 2.40
2644 2783 3.791953 TGATCGGGGTAAAAACCAGAA 57.208 42.857 0.00 0.00 35.85 3.02
2645 2784 3.264706 TCATGATCGGGGTAAAAACCAGA 59.735 43.478 0.00 0.00 36.65 3.86
2646 2785 3.377172 GTCATGATCGGGGTAAAAACCAG 59.623 47.826 0.00 0.00 0.00 4.00
2647 2786 3.244946 TGTCATGATCGGGGTAAAAACCA 60.245 43.478 0.00 0.00 0.00 3.67
2648 2787 3.349022 TGTCATGATCGGGGTAAAAACC 58.651 45.455 0.00 0.00 0.00 3.27
2649 2788 5.576447 AATGTCATGATCGGGGTAAAAAC 57.424 39.130 0.00 0.00 0.00 2.43
2650 2789 6.597832 AAAATGTCATGATCGGGGTAAAAA 57.402 33.333 0.00 0.00 0.00 1.94
2651 2790 6.597832 AAAAATGTCATGATCGGGGTAAAA 57.402 33.333 0.00 0.00 0.00 1.52
2652 2791 6.659668 TGTAAAAATGTCATGATCGGGGTAAA 59.340 34.615 0.00 0.00 0.00 2.01
2653 2792 6.094325 GTGTAAAAATGTCATGATCGGGGTAA 59.906 38.462 0.00 0.00 0.00 2.85
2654 2793 5.587043 GTGTAAAAATGTCATGATCGGGGTA 59.413 40.000 0.00 0.00 0.00 3.69
2655 2794 4.398044 GTGTAAAAATGTCATGATCGGGGT 59.602 41.667 0.00 0.00 0.00 4.95
2656 2795 4.640201 AGTGTAAAAATGTCATGATCGGGG 59.360 41.667 0.00 0.00 0.00 5.73
2657 2796 5.818136 AGTGTAAAAATGTCATGATCGGG 57.182 39.130 0.00 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.