Multiple sequence alignment - TraesCS4D01G289200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G289200 chr4D 100.000 2960 0 0 1 2960 460478727 460481686 0.000000e+00 5467.0
1 TraesCS4D01G289200 chr4D 78.571 238 39 10 1060 1292 467949928 467949698 2.380000e-31 147.0
2 TraesCS4D01G289200 chr4A 93.336 2551 79 27 454 2960 7750555 7748052 0.000000e+00 3685.0
3 TraesCS4D01G289200 chr4A 89.691 97 8 2 5 99 7762427 7762331 4.010000e-24 122.0
4 TraesCS4D01G289200 chr4B 91.816 1454 66 30 529 1975 574948442 574949849 0.000000e+00 1977.0
5 TraesCS4D01G289200 chr4B 95.742 916 35 3 2048 2960 574949884 574950798 0.000000e+00 1472.0
6 TraesCS4D01G289200 chr4B 96.875 32 1 0 411 442 41700710 41700679 1.000000e-03 54.7
7 TraesCS4D01G289200 chr2A 86.364 132 18 0 1080 1211 738921993 738922124 8.550000e-31 145.0
8 TraesCS4D01G289200 chr2D 84.848 132 20 0 1080 1211 607283912 607284043 1.850000e-27 134.0
9 TraesCS4D01G289200 chr2D 88.889 72 8 0 331 402 556200570 556200641 4.060000e-14 89.8
10 TraesCS4D01G289200 chr2B 83.333 132 22 0 1080 1211 739369408 739369277 4.010000e-24 122.0
11 TraesCS4D01G289200 chr2B 89.855 69 7 0 334 402 663366887 663366819 4.060000e-14 89.8
12 TraesCS4D01G289200 chr1D 91.549 71 4 2 333 402 475925129 475925198 2.430000e-16 97.1
13 TraesCS4D01G289200 chr1D 88.571 70 8 0 333 402 314705694 314705625 5.260000e-13 86.1
14 TraesCS4D01G289200 chr6A 93.548 62 3 1 332 393 65858172 65858112 1.130000e-14 91.6
15 TraesCS4D01G289200 chr5D 93.548 62 3 1 332 393 114894065 114894005 1.130000e-14 91.6
16 TraesCS4D01G289200 chr7D 89.855 69 7 0 334 402 160550503 160550435 4.060000e-14 89.8
17 TraesCS4D01G289200 chr7A 89.855 69 7 0 334 402 161689443 161689375 4.060000e-14 89.8
18 TraesCS4D01G289200 chr1A 88.732 71 8 0 332 402 395177538 395177468 1.460000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G289200 chr4D 460478727 460481686 2959 False 5467.0 5467 100.000 1 2960 1 chr4D.!!$F1 2959
1 TraesCS4D01G289200 chr4A 7748052 7750555 2503 True 3685.0 3685 93.336 454 2960 1 chr4A.!!$R1 2506
2 TraesCS4D01G289200 chr4B 574948442 574950798 2356 False 1724.5 1977 93.779 529 2960 2 chr4B.!!$F1 2431

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.034477 AATTGAGGGGCGGTTGTAGG 60.034 55.0 0.0 0.0 0.0 3.18 F
182 183 0.038251 TCTGTGACTGGCATGACGAC 60.038 55.0 0.0 0.0 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 1707 0.322975 GCTGCAGGAACTCCTTGAGA 59.677 55.000 17.12 0.0 46.09 3.27 R
2041 2094 3.429135 CCTGGAAGCTAAACCTCGTAGAC 60.429 52.174 0.00 0.0 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.473643 TCTGTTTTGGGCCAGACG 57.526 55.556 6.23 6.93 32.93 4.18
18 19 1.896660 TCTGTTTTGGGCCAGACGC 60.897 57.895 6.23 0.00 32.93 5.19
19 20 2.124109 TGTTTTGGGCCAGACGCA 60.124 55.556 6.23 0.98 40.31 5.24
20 21 1.526575 CTGTTTTGGGCCAGACGCAT 61.527 55.000 6.23 0.00 41.46 4.73
21 22 1.212751 GTTTTGGGCCAGACGCATC 59.787 57.895 6.23 0.00 41.46 3.91
22 23 1.976474 TTTTGGGCCAGACGCATCC 60.976 57.895 6.23 0.00 41.46 3.51
23 24 2.705312 TTTTGGGCCAGACGCATCCA 62.705 55.000 6.23 0.00 41.46 3.41
24 25 3.626996 TTGGGCCAGACGCATCCAG 62.627 63.158 6.23 0.00 41.46 3.86
25 26 3.785859 GGGCCAGACGCATCCAGA 61.786 66.667 4.39 0.00 40.31 3.86
26 27 2.507944 GGCCAGACGCATCCAGAT 59.492 61.111 0.00 0.00 40.31 2.90
27 28 1.890979 GGCCAGACGCATCCAGATG 60.891 63.158 0.00 3.17 40.31 2.90
28 29 1.153289 GCCAGACGCATCCAGATGT 60.153 57.895 9.29 0.00 40.80 3.06
29 30 1.156645 GCCAGACGCATCCAGATGTC 61.157 60.000 9.29 0.54 40.80 3.06
30 31 0.531532 CCAGACGCATCCAGATGTCC 60.532 60.000 9.29 0.02 40.80 4.02
31 32 0.176449 CAGACGCATCCAGATGTCCA 59.824 55.000 9.29 0.00 40.80 4.02
32 33 0.904649 AGACGCATCCAGATGTCCAA 59.095 50.000 9.29 0.00 40.80 3.53
33 34 1.487976 AGACGCATCCAGATGTCCAAT 59.512 47.619 9.29 0.00 40.80 3.16
34 35 2.700371 AGACGCATCCAGATGTCCAATA 59.300 45.455 9.29 0.00 40.80 1.90
35 36 3.326006 AGACGCATCCAGATGTCCAATAT 59.674 43.478 9.29 0.00 40.80 1.28
36 37 3.668447 ACGCATCCAGATGTCCAATATC 58.332 45.455 9.29 0.00 40.80 1.63
37 38 2.669924 CGCATCCAGATGTCCAATATCG 59.330 50.000 9.29 0.00 40.80 2.92
38 39 2.417933 GCATCCAGATGTCCAATATCGC 59.582 50.000 9.29 0.00 40.80 4.58
39 40 2.839486 TCCAGATGTCCAATATCGCC 57.161 50.000 0.00 0.00 0.00 5.54
40 41 1.347707 TCCAGATGTCCAATATCGCCC 59.652 52.381 0.00 0.00 0.00 6.13
41 42 1.072173 CCAGATGTCCAATATCGCCCA 59.928 52.381 0.00 0.00 0.00 5.36
42 43 2.420642 CAGATGTCCAATATCGCCCAG 58.579 52.381 0.00 0.00 0.00 4.45
43 44 2.050144 AGATGTCCAATATCGCCCAGT 58.950 47.619 0.00 0.00 0.00 4.00
44 45 2.037772 AGATGTCCAATATCGCCCAGTC 59.962 50.000 0.00 0.00 0.00 3.51
45 46 0.468226 TGTCCAATATCGCCCAGTCC 59.532 55.000 0.00 0.00 0.00 3.85
46 47 0.468226 GTCCAATATCGCCCAGTCCA 59.532 55.000 0.00 0.00 0.00 4.02
47 48 0.758734 TCCAATATCGCCCAGTCCAG 59.241 55.000 0.00 0.00 0.00 3.86
48 49 0.886490 CCAATATCGCCCAGTCCAGC 60.886 60.000 0.00 0.00 0.00 4.85
49 50 0.886490 CAATATCGCCCAGTCCAGCC 60.886 60.000 0.00 0.00 0.00 4.85
50 51 1.056700 AATATCGCCCAGTCCAGCCT 61.057 55.000 0.00 0.00 0.00 4.58
51 52 1.476007 ATATCGCCCAGTCCAGCCTC 61.476 60.000 0.00 0.00 0.00 4.70
52 53 2.871795 TATCGCCCAGTCCAGCCTCA 62.872 60.000 0.00 0.00 0.00 3.86
53 54 4.020617 CGCCCAGTCCAGCCTCAA 62.021 66.667 0.00 0.00 0.00 3.02
54 55 2.436109 GCCCAGTCCAGCCTCAAA 59.564 61.111 0.00 0.00 0.00 2.69
55 56 1.000396 GCCCAGTCCAGCCTCAAAT 60.000 57.895 0.00 0.00 0.00 2.32
56 57 0.613012 GCCCAGTCCAGCCTCAAATT 60.613 55.000 0.00 0.00 0.00 1.82
57 58 1.180029 CCCAGTCCAGCCTCAAATTG 58.820 55.000 0.00 0.00 0.00 2.32
58 59 1.272092 CCCAGTCCAGCCTCAAATTGA 60.272 52.381 0.00 0.00 0.00 2.57
59 60 2.089980 CCAGTCCAGCCTCAAATTGAG 58.910 52.381 15.64 15.64 43.91 3.02
66 67 4.743018 CTCAAATTGAGGGGCGGT 57.257 55.556 14.85 0.00 40.71 5.68
67 68 2.961424 CTCAAATTGAGGGGCGGTT 58.039 52.632 14.85 0.00 40.71 4.44
68 69 0.527565 CTCAAATTGAGGGGCGGTTG 59.472 55.000 14.85 0.00 40.71 3.77
69 70 0.178975 TCAAATTGAGGGGCGGTTGT 60.179 50.000 0.00 0.00 0.00 3.32
70 71 1.074084 TCAAATTGAGGGGCGGTTGTA 59.926 47.619 0.00 0.00 0.00 2.41
71 72 1.472480 CAAATTGAGGGGCGGTTGTAG 59.528 52.381 0.00 0.00 0.00 2.74
72 73 0.034477 AATTGAGGGGCGGTTGTAGG 60.034 55.000 0.00 0.00 0.00 3.18
73 74 1.921869 ATTGAGGGGCGGTTGTAGGG 61.922 60.000 0.00 0.00 0.00 3.53
74 75 3.793888 GAGGGGCGGTTGTAGGGG 61.794 72.222 0.00 0.00 0.00 4.79
75 76 4.342086 AGGGGCGGTTGTAGGGGA 62.342 66.667 0.00 0.00 0.00 4.81
76 77 3.793888 GGGGCGGTTGTAGGGGAG 61.794 72.222 0.00 0.00 0.00 4.30
77 78 3.007323 GGGCGGTTGTAGGGGAGT 61.007 66.667 0.00 0.00 0.00 3.85
78 79 2.582978 GGCGGTTGTAGGGGAGTC 59.417 66.667 0.00 0.00 0.00 3.36
79 80 2.288025 GGCGGTTGTAGGGGAGTCA 61.288 63.158 0.00 0.00 0.00 3.41
80 81 1.218316 GCGGTTGTAGGGGAGTCAG 59.782 63.158 0.00 0.00 0.00 3.51
81 82 1.255667 GCGGTTGTAGGGGAGTCAGA 61.256 60.000 0.00 0.00 0.00 3.27
82 83 0.531200 CGGTTGTAGGGGAGTCAGAC 59.469 60.000 0.00 0.00 0.00 3.51
83 84 0.531200 GGTTGTAGGGGAGTCAGACG 59.469 60.000 0.00 0.00 0.00 4.18
84 85 1.254954 GTTGTAGGGGAGTCAGACGT 58.745 55.000 0.00 0.00 0.00 4.34
85 86 1.201880 GTTGTAGGGGAGTCAGACGTC 59.798 57.143 7.70 7.70 0.00 4.34
86 87 0.323178 TGTAGGGGAGTCAGACGTCC 60.323 60.000 13.01 9.48 0.00 4.79
87 88 0.323178 GTAGGGGAGTCAGACGTCCA 60.323 60.000 13.01 0.00 34.14 4.02
88 89 0.323178 TAGGGGAGTCAGACGTCCAC 60.323 60.000 13.01 9.60 36.38 4.02
89 90 2.647158 GGGGAGTCAGACGTCCACC 61.647 68.421 13.01 2.69 34.14 4.61
90 91 2.567049 GGAGTCAGACGTCCACCG 59.433 66.667 13.01 0.00 44.03 4.94
91 92 2.126424 GAGTCAGACGTCCACCGC 60.126 66.667 13.01 1.27 41.42 5.68
92 93 3.628280 GAGTCAGACGTCCACCGCC 62.628 68.421 13.01 0.00 41.42 6.13
93 94 3.681835 GTCAGACGTCCACCGCCT 61.682 66.667 13.01 0.00 41.42 5.52
94 95 3.680786 TCAGACGTCCACCGCCTG 61.681 66.667 13.01 1.81 46.98 4.85
95 96 4.742201 CAGACGTCCACCGCCTGG 62.742 72.222 13.01 0.00 42.57 4.45
107 108 4.362476 GCCTGGGCCAAGCGTTTG 62.362 66.667 12.07 4.84 34.56 2.93
108 109 2.912025 CCTGGGCCAAGCGTTTGT 60.912 61.111 8.04 0.00 32.21 2.83
109 110 2.336088 CTGGGCCAAGCGTTTGTG 59.664 61.111 8.04 3.95 32.21 3.33
110 111 2.441164 TGGGCCAAGCGTTTGTGT 60.441 55.556 2.13 0.00 32.21 3.72
111 112 2.335011 GGGCCAAGCGTTTGTGTC 59.665 61.111 11.22 4.13 32.21 3.67
112 113 2.051345 GGCCAAGCGTTTGTGTCG 60.051 61.111 11.22 0.00 32.21 4.35
119 120 3.688330 CGTTTGTGTCGCGAGCGT 61.688 61.111 10.24 0.00 40.74 5.07
120 121 2.128128 GTTTGTGTCGCGAGCGTG 60.128 61.111 10.24 4.85 40.74 5.34
121 122 2.278923 TTTGTGTCGCGAGCGTGA 60.279 55.556 10.24 7.44 40.74 4.35
122 123 1.663388 TTTGTGTCGCGAGCGTGAT 60.663 52.632 10.24 0.00 40.74 3.06
123 124 1.885814 TTTGTGTCGCGAGCGTGATG 61.886 55.000 10.24 0.00 40.74 3.07
124 125 4.196826 GTGTCGCGAGCGTGATGC 62.197 66.667 10.24 0.00 46.98 3.91
134 135 2.971997 GCGTGATGCCGTTATGAGA 58.028 52.632 0.00 0.00 37.76 3.27
135 136 0.855349 GCGTGATGCCGTTATGAGAG 59.145 55.000 0.00 0.00 37.76 3.20
136 137 1.536072 GCGTGATGCCGTTATGAGAGA 60.536 52.381 0.00 0.00 37.76 3.10
137 138 2.120232 CGTGATGCCGTTATGAGAGAC 58.880 52.381 0.00 0.00 0.00 3.36
138 139 2.479560 CGTGATGCCGTTATGAGAGACA 60.480 50.000 0.00 0.00 0.00 3.41
139 140 3.119291 GTGATGCCGTTATGAGAGACAG 58.881 50.000 0.00 0.00 0.00 3.51
140 141 3.023832 TGATGCCGTTATGAGAGACAGA 58.976 45.455 0.00 0.00 0.00 3.41
141 142 3.638627 TGATGCCGTTATGAGAGACAGAT 59.361 43.478 0.00 0.00 0.00 2.90
142 143 3.443099 TGCCGTTATGAGAGACAGATG 57.557 47.619 0.00 0.00 0.00 2.90
143 144 2.760650 TGCCGTTATGAGAGACAGATGT 59.239 45.455 0.00 0.00 0.00 3.06
144 145 3.181486 TGCCGTTATGAGAGACAGATGTC 60.181 47.826 4.77 4.77 45.08 3.06
156 157 4.647291 GACAGATGTCGTGTAAACAAGG 57.353 45.455 0.00 0.00 35.12 3.61
157 158 4.056050 GACAGATGTCGTGTAAACAAGGT 58.944 43.478 0.00 0.00 35.12 3.50
158 159 4.056050 ACAGATGTCGTGTAAACAAGGTC 58.944 43.478 0.00 0.00 0.00 3.85
159 160 4.202223 ACAGATGTCGTGTAAACAAGGTCT 60.202 41.667 0.00 0.00 0.00 3.85
160 161 4.150627 CAGATGTCGTGTAAACAAGGTCTG 59.849 45.833 10.09 10.09 0.00 3.51
161 162 2.206750 TGTCGTGTAAACAAGGTCTGC 58.793 47.619 0.00 0.00 0.00 4.26
162 163 2.159014 TGTCGTGTAAACAAGGTCTGCT 60.159 45.455 0.00 0.00 0.00 4.24
163 164 2.870411 GTCGTGTAAACAAGGTCTGCTT 59.130 45.455 0.00 0.00 0.00 3.91
164 165 3.059800 GTCGTGTAAACAAGGTCTGCTTC 60.060 47.826 0.00 0.00 0.00 3.86
165 166 3.131396 CGTGTAAACAAGGTCTGCTTCT 58.869 45.455 0.00 0.00 0.00 2.85
166 167 3.059597 CGTGTAAACAAGGTCTGCTTCTG 60.060 47.826 0.00 0.00 0.00 3.02
167 168 3.877508 GTGTAAACAAGGTCTGCTTCTGT 59.122 43.478 0.00 0.00 0.00 3.41
168 169 3.876914 TGTAAACAAGGTCTGCTTCTGTG 59.123 43.478 0.00 0.00 0.00 3.66
169 170 3.281727 AAACAAGGTCTGCTTCTGTGA 57.718 42.857 0.00 0.00 0.00 3.58
170 171 2.246719 ACAAGGTCTGCTTCTGTGAC 57.753 50.000 0.00 0.00 0.00 3.67
171 172 1.765314 ACAAGGTCTGCTTCTGTGACT 59.235 47.619 0.00 0.00 0.00 3.41
172 173 2.141517 CAAGGTCTGCTTCTGTGACTG 58.858 52.381 0.00 0.00 0.00 3.51
173 174 0.683973 AGGTCTGCTTCTGTGACTGG 59.316 55.000 0.00 0.00 0.00 4.00
174 175 0.952984 GGTCTGCTTCTGTGACTGGC 60.953 60.000 0.00 0.00 0.00 4.85
175 176 0.250038 GTCTGCTTCTGTGACTGGCA 60.250 55.000 0.00 0.00 0.00 4.92
176 177 0.689055 TCTGCTTCTGTGACTGGCAT 59.311 50.000 0.00 0.00 32.39 4.40
177 178 0.803117 CTGCTTCTGTGACTGGCATG 59.197 55.000 0.00 0.00 32.39 4.06
178 179 0.397564 TGCTTCTGTGACTGGCATGA 59.602 50.000 0.00 0.00 0.00 3.07
179 180 0.801251 GCTTCTGTGACTGGCATGAC 59.199 55.000 0.00 0.00 0.00 3.06
180 181 1.073964 CTTCTGTGACTGGCATGACG 58.926 55.000 0.00 0.00 0.00 4.35
181 182 0.678950 TTCTGTGACTGGCATGACGA 59.321 50.000 0.00 0.00 0.00 4.20
182 183 0.038251 TCTGTGACTGGCATGACGAC 60.038 55.000 0.00 0.00 0.00 4.34
183 184 1.347097 CTGTGACTGGCATGACGACG 61.347 60.000 0.00 0.00 0.00 5.12
184 185 1.080772 GTGACTGGCATGACGACGA 60.081 57.895 0.00 0.00 0.00 4.20
185 186 1.080772 TGACTGGCATGACGACGAC 60.081 57.895 0.00 0.00 0.00 4.34
186 187 2.126463 ACTGGCATGACGACGACG 60.126 61.111 5.58 5.58 45.75 5.12
187 188 2.178273 CTGGCATGACGACGACGA 59.822 61.111 15.32 0.00 42.66 4.20
188 189 1.226688 CTGGCATGACGACGACGAT 60.227 57.895 15.32 0.00 42.66 3.73
189 190 1.474648 CTGGCATGACGACGACGATG 61.475 60.000 15.32 9.30 42.66 3.84
190 191 1.226575 GGCATGACGACGACGATGA 60.227 57.895 15.32 0.00 42.66 2.92
191 192 0.595053 GGCATGACGACGACGATGAT 60.595 55.000 15.32 0.00 42.66 2.45
192 193 0.500178 GCATGACGACGACGATGATG 59.500 55.000 15.32 12.67 42.66 3.07
193 194 1.123655 CATGACGACGACGATGATGG 58.876 55.000 15.32 0.00 42.66 3.51
194 195 0.595053 ATGACGACGACGATGATGGC 60.595 55.000 15.32 0.00 42.66 4.40
195 196 1.226575 GACGACGACGATGATGGCA 60.227 57.895 15.32 0.00 42.66 4.92
196 197 0.800683 GACGACGACGATGATGGCAA 60.801 55.000 15.32 0.00 42.66 4.52
197 198 1.076533 ACGACGACGATGATGGCAAC 61.077 55.000 15.32 0.00 42.66 4.17
198 199 1.631072 GACGACGATGATGGCAACG 59.369 57.895 0.00 0.00 44.63 4.10
199 200 0.800683 GACGACGATGATGGCAACGA 60.801 55.000 0.00 0.00 42.11 3.85
200 201 1.076533 ACGACGATGATGGCAACGAC 61.077 55.000 0.00 6.49 42.11 4.34
201 202 1.075979 CGACGATGATGGCAACGACA 61.076 55.000 12.01 2.51 42.11 4.35
202 203 1.075542 GACGATGATGGCAACGACAA 58.924 50.000 12.01 0.00 42.11 3.18
203 204 1.665679 GACGATGATGGCAACGACAAT 59.334 47.619 12.01 0.00 42.11 2.71
204 205 1.398041 ACGATGATGGCAACGACAATG 59.602 47.619 12.01 0.00 42.11 2.82
205 206 1.665169 CGATGATGGCAACGACAATGA 59.335 47.619 0.00 0.00 42.11 2.57
206 207 2.537529 CGATGATGGCAACGACAATGAC 60.538 50.000 0.00 0.00 42.11 3.06
207 208 1.889545 TGATGGCAACGACAATGACA 58.110 45.000 0.00 0.00 40.80 3.58
209 210 3.604582 TGATGGCAACGACAATGACATA 58.395 40.909 0.00 0.00 46.40 2.29
210 211 4.198530 TGATGGCAACGACAATGACATAT 58.801 39.130 0.00 0.00 46.40 1.78
211 212 4.639755 TGATGGCAACGACAATGACATATT 59.360 37.500 0.00 0.00 46.40 1.28
212 213 5.125257 TGATGGCAACGACAATGACATATTT 59.875 36.000 0.00 0.00 46.40 1.40
213 214 4.980590 TGGCAACGACAATGACATATTTC 58.019 39.130 0.00 0.00 42.51 2.17
214 215 4.028383 GGCAACGACAATGACATATTTCG 58.972 43.478 10.24 10.24 0.00 3.46
215 216 4.201773 GGCAACGACAATGACATATTTCGA 60.202 41.667 16.10 0.00 0.00 3.71
216 217 5.320723 GCAACGACAATGACATATTTCGAA 58.679 37.500 16.10 0.00 0.00 3.71
217 218 5.965334 GCAACGACAATGACATATTTCGAAT 59.035 36.000 16.10 0.00 0.00 3.34
218 219 6.468956 GCAACGACAATGACATATTTCGAATT 59.531 34.615 16.10 0.00 0.00 2.17
219 220 7.304849 GCAACGACAATGACATATTTCGAATTC 60.305 37.037 16.10 0.00 0.00 2.17
220 221 7.302350 ACGACAATGACATATTTCGAATTCA 57.698 32.000 16.10 0.00 0.00 2.57
221 222 7.919690 ACGACAATGACATATTTCGAATTCAT 58.080 30.769 16.10 0.12 0.00 2.57
222 223 7.852454 ACGACAATGACATATTTCGAATTCATG 59.148 33.333 16.10 5.69 0.00 3.07
223 224 7.852454 CGACAATGACATATTTCGAATTCATGT 59.148 33.333 15.57 15.57 32.70 3.21
224 225 9.507280 GACAATGACATATTTCGAATTCATGTT 57.493 29.630 16.31 5.29 30.25 2.71
225 226 9.292846 ACAATGACATATTTCGAATTCATGTTG 57.707 29.630 16.31 13.84 30.25 3.33
226 227 9.292846 CAATGACATATTTCGAATTCATGTTGT 57.707 29.630 16.31 8.81 30.25 3.32
229 230 9.767684 TGACATATTTCGAATTCATGTTGTAAC 57.232 29.630 16.31 7.88 30.25 2.50
230 231 9.988350 GACATATTTCGAATTCATGTTGTAACT 57.012 29.630 16.31 0.00 30.25 2.24
235 236 6.984740 TCGAATTCATGTTGTAACTTTTGC 57.015 33.333 6.22 0.00 0.00 3.68
236 237 5.623264 TCGAATTCATGTTGTAACTTTTGCG 59.377 36.000 6.22 0.00 0.00 4.85
237 238 5.623264 CGAATTCATGTTGTAACTTTTGCGA 59.377 36.000 6.22 0.00 0.00 5.10
238 239 6.141527 CGAATTCATGTTGTAACTTTTGCGAA 59.858 34.615 6.22 0.00 0.00 4.70
239 240 6.747659 ATTCATGTTGTAACTTTTGCGAAC 57.252 33.333 0.00 0.00 0.00 3.95
240 241 4.602995 TCATGTTGTAACTTTTGCGAACC 58.397 39.130 0.00 0.00 0.00 3.62
241 242 4.336993 TCATGTTGTAACTTTTGCGAACCT 59.663 37.500 0.00 0.00 0.00 3.50
242 243 4.705337 TGTTGTAACTTTTGCGAACCTT 57.295 36.364 0.00 0.00 0.00 3.50
243 244 4.664188 TGTTGTAACTTTTGCGAACCTTC 58.336 39.130 0.00 0.00 0.00 3.46
244 245 4.396790 TGTTGTAACTTTTGCGAACCTTCT 59.603 37.500 0.00 0.00 0.00 2.85
245 246 5.585445 TGTTGTAACTTTTGCGAACCTTCTA 59.415 36.000 0.00 0.00 0.00 2.10
246 247 6.093771 TGTTGTAACTTTTGCGAACCTTCTAA 59.906 34.615 0.00 0.00 0.00 2.10
247 248 6.295039 TGTAACTTTTGCGAACCTTCTAAG 57.705 37.500 0.00 0.00 0.00 2.18
248 249 5.818857 TGTAACTTTTGCGAACCTTCTAAGT 59.181 36.000 0.00 0.00 0.00 2.24
249 250 5.419760 AACTTTTGCGAACCTTCTAAGTC 57.580 39.130 0.00 0.00 0.00 3.01
250 251 4.448210 ACTTTTGCGAACCTTCTAAGTCA 58.552 39.130 0.00 0.00 0.00 3.41
251 252 5.063880 ACTTTTGCGAACCTTCTAAGTCAT 58.936 37.500 0.00 0.00 0.00 3.06
252 253 5.531287 ACTTTTGCGAACCTTCTAAGTCATT 59.469 36.000 0.00 0.00 0.00 2.57
253 254 5.607119 TTTGCGAACCTTCTAAGTCATTC 57.393 39.130 0.00 0.00 0.00 2.67
254 255 3.596214 TGCGAACCTTCTAAGTCATTCC 58.404 45.455 0.00 0.00 0.00 3.01
255 256 2.937149 GCGAACCTTCTAAGTCATTCCC 59.063 50.000 0.00 0.00 0.00 3.97
256 257 3.618997 GCGAACCTTCTAAGTCATTCCCA 60.619 47.826 0.00 0.00 0.00 4.37
257 258 4.575885 CGAACCTTCTAAGTCATTCCCAA 58.424 43.478 0.00 0.00 0.00 4.12
258 259 5.186198 CGAACCTTCTAAGTCATTCCCAAT 58.814 41.667 0.00 0.00 0.00 3.16
259 260 6.346096 CGAACCTTCTAAGTCATTCCCAATA 58.654 40.000 0.00 0.00 0.00 1.90
260 261 6.992715 CGAACCTTCTAAGTCATTCCCAATAT 59.007 38.462 0.00 0.00 0.00 1.28
261 262 7.041780 CGAACCTTCTAAGTCATTCCCAATATG 60.042 40.741 0.00 0.00 0.00 1.78
262 263 7.213178 ACCTTCTAAGTCATTCCCAATATGT 57.787 36.000 0.00 0.00 0.00 2.29
263 264 7.643123 ACCTTCTAAGTCATTCCCAATATGTT 58.357 34.615 0.00 0.00 0.00 2.71
264 265 7.775561 ACCTTCTAAGTCATTCCCAATATGTTC 59.224 37.037 0.00 0.00 0.00 3.18
265 266 7.995488 CCTTCTAAGTCATTCCCAATATGTTCT 59.005 37.037 0.00 0.00 0.00 3.01
268 269 9.832445 TCTAAGTCATTCCCAATATGTTCTAAC 57.168 33.333 0.00 0.00 0.00 2.34
269 270 9.838339 CTAAGTCATTCCCAATATGTTCTAACT 57.162 33.333 0.00 0.00 0.00 2.24
271 272 9.533831 AAGTCATTCCCAATATGTTCTAACTTT 57.466 29.630 0.00 0.00 0.00 2.66
298 299 9.862371 ATTTCTGAATCAGATGTATATACGGAC 57.138 33.333 14.31 2.69 40.39 4.79
299 300 7.996098 TCTGAATCAGATGTATATACGGACA 57.004 36.000 9.18 0.00 35.39 4.02
300 301 8.404107 TCTGAATCAGATGTATATACGGACAA 57.596 34.615 9.18 0.00 35.39 3.18
301 302 8.856103 TCTGAATCAGATGTATATACGGACAAA 58.144 33.333 9.18 0.00 35.39 2.83
302 303 9.476202 CTGAATCAGATGTATATACGGACAAAA 57.524 33.333 3.77 0.00 32.44 2.44
303 304 9.825109 TGAATCAGATGTATATACGGACAAAAA 57.175 29.630 8.33 0.00 0.00 1.94
319 320 1.875963 AAAAAGATGGCAGCGACGG 59.124 52.632 0.00 0.00 0.00 4.79
320 321 0.605319 AAAAAGATGGCAGCGACGGA 60.605 50.000 0.00 0.00 0.00 4.69
321 322 1.021390 AAAAGATGGCAGCGACGGAG 61.021 55.000 0.00 0.00 0.00 4.63
322 323 2.859273 AAAGATGGCAGCGACGGAGG 62.859 60.000 0.00 0.00 0.00 4.30
323 324 3.838271 GATGGCAGCGACGGAGGA 61.838 66.667 0.00 0.00 0.00 3.71
324 325 3.781770 GATGGCAGCGACGGAGGAG 62.782 68.421 0.00 0.00 0.00 3.69
330 331 4.821589 GCGACGGAGGAGGCCAAG 62.822 72.222 5.01 0.00 0.00 3.61
331 332 4.821589 CGACGGAGGAGGCCAAGC 62.822 72.222 5.01 0.00 0.00 4.01
332 333 4.821589 GACGGAGGAGGCCAAGCG 62.822 72.222 5.01 0.00 0.00 4.68
334 335 4.394712 CGGAGGAGGCCAAGCGTT 62.395 66.667 5.01 0.00 0.00 4.84
335 336 2.034221 GGAGGAGGCCAAGCGTTT 59.966 61.111 5.01 0.00 0.00 3.60
336 337 1.603739 GGAGGAGGCCAAGCGTTTT 60.604 57.895 5.01 0.00 0.00 2.43
337 338 0.322187 GGAGGAGGCCAAGCGTTTTA 60.322 55.000 5.01 0.00 0.00 1.52
338 339 1.087501 GAGGAGGCCAAGCGTTTTAG 58.912 55.000 5.01 0.00 0.00 1.85
339 340 0.400594 AGGAGGCCAAGCGTTTTAGT 59.599 50.000 5.01 0.00 0.00 2.24
340 341 0.521735 GGAGGCCAAGCGTTTTAGTG 59.478 55.000 5.01 0.00 0.00 2.74
341 342 1.235724 GAGGCCAAGCGTTTTAGTGT 58.764 50.000 5.01 0.00 0.00 3.55
342 343 0.951558 AGGCCAAGCGTTTTAGTGTG 59.048 50.000 5.01 0.00 0.00 3.82
343 344 0.666374 GGCCAAGCGTTTTAGTGTGT 59.334 50.000 0.00 0.00 0.00 3.72
344 345 1.066454 GGCCAAGCGTTTTAGTGTGTT 59.934 47.619 0.00 0.00 0.00 3.32
345 346 2.480587 GGCCAAGCGTTTTAGTGTGTTT 60.481 45.455 0.00 0.00 0.00 2.83
346 347 2.533942 GCCAAGCGTTTTAGTGTGTTTG 59.466 45.455 0.00 0.00 0.00 2.93
347 348 3.765026 CCAAGCGTTTTAGTGTGTTTGT 58.235 40.909 0.00 0.00 0.00 2.83
348 349 4.170256 CCAAGCGTTTTAGTGTGTTTGTT 58.830 39.130 0.00 0.00 0.00 2.83
349 350 4.264380 CCAAGCGTTTTAGTGTGTTTGTTC 59.736 41.667 0.00 0.00 0.00 3.18
350 351 4.688511 AGCGTTTTAGTGTGTTTGTTCA 57.311 36.364 0.00 0.00 0.00 3.18
351 352 5.243426 AGCGTTTTAGTGTGTTTGTTCAT 57.757 34.783 0.00 0.00 0.00 2.57
352 353 5.646606 AGCGTTTTAGTGTGTTTGTTCATT 58.353 33.333 0.00 0.00 0.00 2.57
353 354 5.741982 AGCGTTTTAGTGTGTTTGTTCATTC 59.258 36.000 0.00 0.00 0.00 2.67
354 355 5.513495 GCGTTTTAGTGTGTTTGTTCATTCA 59.487 36.000 0.00 0.00 0.00 2.57
355 356 6.198216 GCGTTTTAGTGTGTTTGTTCATTCAT 59.802 34.615 0.00 0.00 0.00 2.57
356 357 7.253950 GCGTTTTAGTGTGTTTGTTCATTCATT 60.254 33.333 0.00 0.00 0.00 2.57
357 358 8.591312 CGTTTTAGTGTGTTTGTTCATTCATTT 58.409 29.630 0.00 0.00 0.00 2.32
358 359 9.900264 GTTTTAGTGTGTTTGTTCATTCATTTC 57.100 29.630 0.00 0.00 0.00 2.17
359 360 9.645059 TTTTAGTGTGTTTGTTCATTCATTTCA 57.355 25.926 0.00 0.00 0.00 2.69
360 361 8.854979 TTAGTGTGTTTGTTCATTCATTTCAG 57.145 30.769 0.00 0.00 0.00 3.02
361 362 5.750067 AGTGTGTTTGTTCATTCATTTCAGC 59.250 36.000 0.00 0.00 0.00 4.26
362 363 5.049167 TGTGTTTGTTCATTCATTTCAGCC 58.951 37.500 0.00 0.00 0.00 4.85
363 364 4.448732 GTGTTTGTTCATTCATTTCAGCCC 59.551 41.667 0.00 0.00 0.00 5.19
364 365 3.574284 TTGTTCATTCATTTCAGCCCG 57.426 42.857 0.00 0.00 0.00 6.13
365 366 2.513753 TGTTCATTCATTTCAGCCCGT 58.486 42.857 0.00 0.00 0.00 5.28
366 367 3.680490 TGTTCATTCATTTCAGCCCGTA 58.320 40.909 0.00 0.00 0.00 4.02
367 368 4.269183 TGTTCATTCATTTCAGCCCGTAT 58.731 39.130 0.00 0.00 0.00 3.06
368 369 4.096231 TGTTCATTCATTTCAGCCCGTATG 59.904 41.667 0.00 0.00 0.00 2.39
369 370 3.884895 TCATTCATTTCAGCCCGTATGT 58.115 40.909 0.00 0.00 0.00 2.29
370 371 5.029807 TCATTCATTTCAGCCCGTATGTA 57.970 39.130 0.00 0.00 0.00 2.29
371 372 5.056480 TCATTCATTTCAGCCCGTATGTAG 58.944 41.667 0.00 0.00 0.00 2.74
372 373 4.481368 TTCATTTCAGCCCGTATGTAGT 57.519 40.909 0.00 0.00 0.00 2.73
373 374 4.054780 TCATTTCAGCCCGTATGTAGTC 57.945 45.455 0.00 0.00 0.00 2.59
374 375 2.973694 TTTCAGCCCGTATGTAGTCC 57.026 50.000 0.00 0.00 0.00 3.85
375 376 1.855295 TTCAGCCCGTATGTAGTCCA 58.145 50.000 0.00 0.00 0.00 4.02
376 377 2.082140 TCAGCCCGTATGTAGTCCAT 57.918 50.000 0.00 0.00 37.58 3.41
377 378 3.232720 TCAGCCCGTATGTAGTCCATA 57.767 47.619 0.00 0.00 34.86 2.74
390 391 7.898014 ATGTAGTCCATACTGAACTATCACA 57.102 36.000 0.00 0.00 36.36 3.58
391 392 7.712204 TGTAGTCCATACTGAACTATCACAA 57.288 36.000 0.00 0.00 36.36 3.33
392 393 8.129496 TGTAGTCCATACTGAACTATCACAAA 57.871 34.615 0.00 0.00 36.36 2.83
393 394 8.251026 TGTAGTCCATACTGAACTATCACAAAG 58.749 37.037 0.00 0.00 36.36 2.77
394 395 7.482169 AGTCCATACTGAACTATCACAAAGA 57.518 36.000 0.00 0.00 33.57 2.52
395 396 8.083828 AGTCCATACTGAACTATCACAAAGAT 57.916 34.615 0.00 0.00 36.20 2.40
396 397 8.200792 AGTCCATACTGAACTATCACAAAGATC 58.799 37.037 0.00 0.00 34.71 2.75
397 398 8.200792 GTCCATACTGAACTATCACAAAGATCT 58.799 37.037 0.00 0.00 38.19 2.75
398 399 8.762645 TCCATACTGAACTATCACAAAGATCTT 58.237 33.333 0.88 0.88 38.19 2.40
408 409 8.643324 ACTATCACAAAGATCTTATACACTCCC 58.357 37.037 8.75 0.00 38.19 4.30
409 410 7.682787 ATCACAAAGATCTTATACACTCCCT 57.317 36.000 8.75 0.00 28.20 4.20
410 411 7.113658 TCACAAAGATCTTATACACTCCCTC 57.886 40.000 8.75 0.00 0.00 4.30
411 412 6.098409 TCACAAAGATCTTATACACTCCCTCC 59.902 42.308 8.75 0.00 0.00 4.30
412 413 5.069251 ACAAAGATCTTATACACTCCCTCCG 59.931 44.000 8.75 0.00 0.00 4.63
413 414 4.456662 AGATCTTATACACTCCCTCCGT 57.543 45.455 0.00 0.00 0.00 4.69
414 415 4.805744 AGATCTTATACACTCCCTCCGTT 58.194 43.478 0.00 0.00 0.00 4.44
415 416 5.950023 AGATCTTATACACTCCCTCCGTTA 58.050 41.667 0.00 0.00 0.00 3.18
416 417 6.005198 AGATCTTATACACTCCCTCCGTTAG 58.995 44.000 0.00 0.00 0.00 2.34
417 418 5.121380 TCTTATACACTCCCTCCGTTAGT 57.879 43.478 0.00 0.00 0.00 2.24
418 419 4.885907 TCTTATACACTCCCTCCGTTAGTG 59.114 45.833 0.00 0.00 44.89 2.74
419 420 2.885135 TACACTCCCTCCGTTAGTGA 57.115 50.000 8.57 0.00 42.59 3.41
420 421 2.233305 ACACTCCCTCCGTTAGTGAT 57.767 50.000 8.57 0.00 42.59 3.06
421 422 2.100989 ACACTCCCTCCGTTAGTGATC 58.899 52.381 8.57 0.00 42.59 2.92
422 423 2.291670 ACACTCCCTCCGTTAGTGATCT 60.292 50.000 8.57 0.00 42.59 2.75
423 424 3.053842 ACACTCCCTCCGTTAGTGATCTA 60.054 47.826 8.57 0.00 42.59 1.98
424 425 3.952323 CACTCCCTCCGTTAGTGATCTAA 59.048 47.826 0.00 0.00 42.59 2.10
425 426 4.401519 CACTCCCTCCGTTAGTGATCTAAA 59.598 45.833 0.00 0.00 42.59 1.85
426 427 4.401837 ACTCCCTCCGTTAGTGATCTAAAC 59.598 45.833 0.00 0.00 37.81 2.01
427 428 3.379372 TCCCTCCGTTAGTGATCTAAACG 59.621 47.826 16.01 16.01 37.81 3.60
428 429 3.379372 CCCTCCGTTAGTGATCTAAACGA 59.621 47.826 21.34 11.43 37.81 3.85
429 430 4.037684 CCCTCCGTTAGTGATCTAAACGAT 59.962 45.833 21.34 0.00 37.81 3.73
430 431 5.451520 CCCTCCGTTAGTGATCTAAACGATT 60.452 44.000 21.34 0.00 37.81 3.34
431 432 6.040878 CCTCCGTTAGTGATCTAAACGATTT 58.959 40.000 21.34 0.00 37.81 2.17
432 433 6.534079 CCTCCGTTAGTGATCTAAACGATTTT 59.466 38.462 21.34 0.00 37.81 1.82
433 434 7.703621 CCTCCGTTAGTGATCTAAACGATTTTA 59.296 37.037 21.34 7.43 37.81 1.52
434 435 9.245962 CTCCGTTAGTGATCTAAACGATTTTAT 57.754 33.333 21.34 0.00 37.81 1.40
446 447 8.693504 TCTAAACGATTTTATATTACTTCGCGG 58.306 33.333 6.13 0.00 0.00 6.46
447 448 7.467557 AAACGATTTTATATTACTTCGCGGA 57.532 32.000 6.13 0.00 0.00 5.54
448 449 6.686130 ACGATTTTATATTACTTCGCGGAG 57.314 37.500 14.32 14.32 0.00 4.63
449 450 5.632347 ACGATTTTATATTACTTCGCGGAGG 59.368 40.000 20.69 5.84 0.00 4.30
450 451 5.061808 CGATTTTATATTACTTCGCGGAGGG 59.938 44.000 20.69 0.00 44.04 4.30
478 479 3.350833 TCAGAACGGAGGAAGTAGTACC 58.649 50.000 0.00 0.00 0.00 3.34
491 492 6.901857 AGGAAGTAGTACCCTAGTATTTTGCT 59.098 38.462 0.00 0.00 0.00 3.91
521 525 6.530019 AAACCTAAACTTAATCATGCCCAG 57.470 37.500 0.00 0.00 0.00 4.45
522 526 5.450818 ACCTAAACTTAATCATGCCCAGA 57.549 39.130 0.00 0.00 0.00 3.86
525 529 7.759607 ACCTAAACTTAATCATGCCCAGATAT 58.240 34.615 0.00 0.00 0.00 1.63
736 763 1.310216 GCCATGCATCACACTGCTCA 61.310 55.000 0.00 0.00 42.75 4.26
738 765 1.161843 CATGCATCACACTGCTCACA 58.838 50.000 0.00 0.00 42.75 3.58
741 768 0.236711 GCATCACACTGCTCACACAC 59.763 55.000 0.00 0.00 39.12 3.82
742 769 1.585297 CATCACACTGCTCACACACA 58.415 50.000 0.00 0.00 0.00 3.72
743 770 1.262417 CATCACACTGCTCACACACAC 59.738 52.381 0.00 0.00 0.00 3.82
753 780 2.612221 GCTCACACACACCCCTACTTAC 60.612 54.545 0.00 0.00 0.00 2.34
776 803 4.166888 GCGCCCTCCATCAGCTCA 62.167 66.667 0.00 0.00 0.00 4.26
777 804 2.108566 CGCCCTCCATCAGCTCAG 59.891 66.667 0.00 0.00 0.00 3.35
778 805 2.203181 GCCCTCCATCAGCTCAGC 60.203 66.667 0.00 0.00 0.00 4.26
779 806 2.744243 GCCCTCCATCAGCTCAGCT 61.744 63.158 0.00 0.00 40.77 4.24
780 807 1.446791 CCCTCCATCAGCTCAGCTC 59.553 63.158 0.00 0.00 36.40 4.09
806 833 1.051812 CACACTCTCCTCACCCACTT 58.948 55.000 0.00 0.00 0.00 3.16
816 843 2.163815 CCTCACCCACTTCACTACTACG 59.836 54.545 0.00 0.00 0.00 3.51
817 844 1.542915 TCACCCACTTCACTACTACGC 59.457 52.381 0.00 0.00 0.00 4.42
818 845 0.893447 ACCCACTTCACTACTACGCC 59.107 55.000 0.00 0.00 0.00 5.68
848 875 3.699038 CTCCAAAACCAAAACCTCACTCA 59.301 43.478 0.00 0.00 0.00 3.41
946 978 3.307269 GCTGCCTGGATATATTGCTCTCA 60.307 47.826 0.00 0.00 0.00 3.27
957 989 7.495279 GGATATATTGCTCTCATTCTGATCCAC 59.505 40.741 0.00 0.00 0.00 4.02
1045 1081 3.387947 GGAAGAAGGGGCCGACGA 61.388 66.667 0.00 0.00 0.00 4.20
1981 2034 9.821240 TCTGAGATCTTATATTCTTAGGCTCTT 57.179 33.333 0.00 0.00 0.00 2.85
2041 2094 4.333913 ACCTTCGATCTCTGATGGATTG 57.666 45.455 7.67 0.00 35.31 2.67
2255 2312 2.523015 CTCATGCTTTTCGGTCATTGC 58.477 47.619 0.00 0.00 0.00 3.56
2284 2343 6.768483 TCACTCACTGTCAAAGGATTTATCA 58.232 36.000 0.00 0.00 35.03 2.15
2304 2363 3.752747 TCAAAAGCAAGAAGATCGATGCA 59.247 39.130 0.54 0.00 36.83 3.96
2310 2369 3.843868 GCAAGAAGATCGATGCAATCACG 60.844 47.826 0.54 0.00 45.97 4.35
2317 2376 2.892374 TCGATGCAATCACGACTCATT 58.108 42.857 0.00 0.00 45.97 2.57
2396 2455 2.250031 TGCCCACAAGAAAGCATTCAT 58.750 42.857 4.27 0.00 38.06 2.57
2436 2495 6.377780 CAAAATATGACGGTGAATTGTGACA 58.622 36.000 0.00 0.00 0.00 3.58
2598 2657 5.087391 TGTCAATTGTATTACCCGCTACA 57.913 39.130 5.13 0.00 0.00 2.74
2689 2748 5.632347 GTCCGATACAATAGTACCAAATCGG 59.368 44.000 13.22 13.22 45.83 4.18
2810 2869 2.747855 GCAGCTTGGGGGAGTTCG 60.748 66.667 0.00 0.00 0.00 3.95
2837 2896 2.921634 TTCGGACAGAAGAGATGTCG 57.078 50.000 0.44 0.00 46.49 4.35
2909 2968 6.862711 AGCATATGAGAGATGAATTGTGTG 57.137 37.500 6.97 0.00 0.00 3.82
2916 2975 6.950842 TGAGAGATGAATTGTGTGTATCCTT 58.049 36.000 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.896660 GCGTCTGGCCCAAAACAGA 60.897 57.895 0.00 0.00 41.13 3.41
1 2 1.526575 ATGCGTCTGGCCCAAAACAG 61.527 55.000 0.00 0.00 42.61 3.16
2 3 1.523154 GATGCGTCTGGCCCAAAACA 61.523 55.000 0.00 0.00 42.61 2.83
3 4 1.212751 GATGCGTCTGGCCCAAAAC 59.787 57.895 0.00 0.00 42.61 2.43
4 5 1.976474 GGATGCGTCTGGCCCAAAA 60.976 57.895 5.77 0.00 42.61 2.44
5 6 2.361104 GGATGCGTCTGGCCCAAA 60.361 61.111 5.77 0.00 42.61 3.28
6 7 3.626996 CTGGATGCGTCTGGCCCAA 62.627 63.158 5.77 0.00 42.61 4.12
7 8 4.100084 CTGGATGCGTCTGGCCCA 62.100 66.667 5.77 0.00 42.61 5.36
8 9 3.112205 ATCTGGATGCGTCTGGCCC 62.112 63.158 5.77 0.00 42.61 5.80
9 10 1.890979 CATCTGGATGCGTCTGGCC 60.891 63.158 5.77 0.00 42.61 5.36
10 11 1.153289 ACATCTGGATGCGTCTGGC 60.153 57.895 5.77 0.00 42.39 4.85
11 12 0.531532 GGACATCTGGATGCGTCTGG 60.532 60.000 5.77 0.00 42.39 3.86
12 13 0.176449 TGGACATCTGGATGCGTCTG 59.824 55.000 5.77 0.00 42.39 3.51
13 14 0.904649 TTGGACATCTGGATGCGTCT 59.095 50.000 5.77 0.00 42.39 4.18
14 15 1.959042 ATTGGACATCTGGATGCGTC 58.041 50.000 10.13 0.00 42.39 5.19
15 16 3.668447 GATATTGGACATCTGGATGCGT 58.332 45.455 10.13 0.00 42.39 5.24
16 17 2.669924 CGATATTGGACATCTGGATGCG 59.330 50.000 10.13 0.74 42.39 4.73
17 18 2.417933 GCGATATTGGACATCTGGATGC 59.582 50.000 10.13 4.08 42.39 3.91
18 19 3.005554 GGCGATATTGGACATCTGGATG 58.994 50.000 8.81 8.81 44.15 3.51
19 20 2.026822 GGGCGATATTGGACATCTGGAT 60.027 50.000 0.00 0.00 0.00 3.41
20 21 1.347707 GGGCGATATTGGACATCTGGA 59.652 52.381 0.00 0.00 0.00 3.86
21 22 1.072173 TGGGCGATATTGGACATCTGG 59.928 52.381 0.00 0.00 0.00 3.86
22 23 2.224378 ACTGGGCGATATTGGACATCTG 60.224 50.000 0.00 0.00 0.00 2.90
23 24 2.037772 GACTGGGCGATATTGGACATCT 59.962 50.000 0.00 0.00 0.00 2.90
24 25 2.417719 GACTGGGCGATATTGGACATC 58.582 52.381 0.00 0.00 0.00 3.06
25 26 1.072331 GGACTGGGCGATATTGGACAT 59.928 52.381 0.00 0.00 0.00 3.06
26 27 0.468226 GGACTGGGCGATATTGGACA 59.532 55.000 0.00 0.00 0.00 4.02
27 28 0.468226 TGGACTGGGCGATATTGGAC 59.532 55.000 0.00 0.00 0.00 4.02
28 29 0.758734 CTGGACTGGGCGATATTGGA 59.241 55.000 0.00 0.00 0.00 3.53
29 30 0.886490 GCTGGACTGGGCGATATTGG 60.886 60.000 0.00 0.00 0.00 3.16
30 31 0.886490 GGCTGGACTGGGCGATATTG 60.886 60.000 0.00 0.00 0.00 1.90
31 32 1.056700 AGGCTGGACTGGGCGATATT 61.057 55.000 0.00 0.00 0.00 1.28
32 33 1.460305 AGGCTGGACTGGGCGATAT 60.460 57.895 0.00 0.00 0.00 1.63
33 34 2.041922 AGGCTGGACTGGGCGATA 60.042 61.111 0.00 0.00 0.00 2.92
34 35 3.474570 GAGGCTGGACTGGGCGAT 61.475 66.667 0.00 0.00 0.00 4.58
36 37 2.826777 ATTTGAGGCTGGACTGGGCG 62.827 60.000 0.00 0.00 0.00 6.13
37 38 0.613012 AATTTGAGGCTGGACTGGGC 60.613 55.000 0.00 0.00 0.00 5.36
38 39 1.180029 CAATTTGAGGCTGGACTGGG 58.820 55.000 0.00 0.00 0.00 4.45
39 40 2.089980 CTCAATTTGAGGCTGGACTGG 58.910 52.381 17.09 0.00 40.71 4.00
49 50 0.527565 CAACCGCCCCTCAATTTGAG 59.472 55.000 17.78 17.78 43.91 3.02
50 51 0.178975 ACAACCGCCCCTCAATTTGA 60.179 50.000 0.00 0.00 0.00 2.69
51 52 1.472480 CTACAACCGCCCCTCAATTTG 59.528 52.381 0.00 0.00 0.00 2.32
52 53 1.615919 CCTACAACCGCCCCTCAATTT 60.616 52.381 0.00 0.00 0.00 1.82
53 54 0.034477 CCTACAACCGCCCCTCAATT 60.034 55.000 0.00 0.00 0.00 2.32
54 55 1.607612 CCTACAACCGCCCCTCAAT 59.392 57.895 0.00 0.00 0.00 2.57
55 56 2.598787 CCCTACAACCGCCCCTCAA 61.599 63.158 0.00 0.00 0.00 3.02
56 57 3.006728 CCCTACAACCGCCCCTCA 61.007 66.667 0.00 0.00 0.00 3.86
57 58 3.793888 CCCCTACAACCGCCCCTC 61.794 72.222 0.00 0.00 0.00 4.30
58 59 4.342086 TCCCCTACAACCGCCCCT 62.342 66.667 0.00 0.00 0.00 4.79
59 60 3.793888 CTCCCCTACAACCGCCCC 61.794 72.222 0.00 0.00 0.00 5.80
60 61 3.007323 ACTCCCCTACAACCGCCC 61.007 66.667 0.00 0.00 0.00 6.13
61 62 2.240162 CTGACTCCCCTACAACCGCC 62.240 65.000 0.00 0.00 0.00 6.13
62 63 1.218316 CTGACTCCCCTACAACCGC 59.782 63.158 0.00 0.00 0.00 5.68
63 64 0.531200 GTCTGACTCCCCTACAACCG 59.469 60.000 0.00 0.00 0.00 4.44
64 65 0.531200 CGTCTGACTCCCCTACAACC 59.469 60.000 6.21 0.00 0.00 3.77
65 66 1.201880 GACGTCTGACTCCCCTACAAC 59.798 57.143 8.70 0.00 0.00 3.32
66 67 1.542492 GACGTCTGACTCCCCTACAA 58.458 55.000 8.70 0.00 0.00 2.41
67 68 0.323178 GGACGTCTGACTCCCCTACA 60.323 60.000 16.46 0.00 0.00 2.74
68 69 0.323178 TGGACGTCTGACTCCCCTAC 60.323 60.000 16.46 0.00 0.00 3.18
69 70 0.323178 GTGGACGTCTGACTCCCCTA 60.323 60.000 16.46 3.60 0.00 3.53
70 71 1.606889 GTGGACGTCTGACTCCCCT 60.607 63.158 16.46 0.00 0.00 4.79
71 72 2.647158 GGTGGACGTCTGACTCCCC 61.647 68.421 16.46 15.13 0.00 4.81
72 73 2.971452 GGTGGACGTCTGACTCCC 59.029 66.667 16.46 13.28 0.00 4.30
73 74 2.567049 CGGTGGACGTCTGACTCC 59.433 66.667 16.46 15.21 37.93 3.85
74 75 2.126424 GCGGTGGACGTCTGACTC 60.126 66.667 16.46 0.00 46.52 3.36
75 76 3.681835 GGCGGTGGACGTCTGACT 61.682 66.667 16.46 0.00 45.50 3.41
90 91 4.362476 CAAACGCTTGGCCCAGGC 62.362 66.667 7.96 7.96 41.06 4.85
91 92 2.912025 ACAAACGCTTGGCCCAGG 60.912 61.111 5.89 0.00 36.82 4.45
92 93 2.336088 CACAAACGCTTGGCCCAG 59.664 61.111 0.00 0.00 36.82 4.45
93 94 2.441164 ACACAAACGCTTGGCCCA 60.441 55.556 0.00 0.00 36.82 5.36
94 95 2.335011 GACACAAACGCTTGGCCC 59.665 61.111 0.00 0.00 36.82 5.80
95 96 2.051345 CGACACAAACGCTTGGCC 60.051 61.111 3.25 0.00 36.82 5.36
102 103 3.688330 ACGCTCGCGACACAAACG 61.688 61.111 18.98 5.02 42.83 3.60
103 104 1.886861 ATCACGCTCGCGACACAAAC 61.887 55.000 18.98 0.00 42.83 2.93
104 105 1.663388 ATCACGCTCGCGACACAAA 60.663 52.632 18.98 0.00 42.83 2.83
105 106 2.049526 ATCACGCTCGCGACACAA 60.050 55.556 18.98 0.00 42.83 3.33
106 107 2.804931 CATCACGCTCGCGACACA 60.805 61.111 18.98 0.00 42.83 3.72
107 108 4.196826 GCATCACGCTCGCGACAC 62.197 66.667 18.98 0.00 42.83 3.67
112 113 2.237751 ATAACGGCATCACGCTCGC 61.238 57.895 0.00 0.00 41.91 5.03
113 114 0.869880 TCATAACGGCATCACGCTCG 60.870 55.000 0.00 0.00 41.91 5.03
114 115 0.855349 CTCATAACGGCATCACGCTC 59.145 55.000 0.00 0.00 41.91 5.03
115 116 0.459899 TCTCATAACGGCATCACGCT 59.540 50.000 0.00 0.00 41.91 5.07
116 117 0.855349 CTCTCATAACGGCATCACGC 59.145 55.000 0.00 0.00 41.28 5.34
117 118 2.120232 GTCTCTCATAACGGCATCACG 58.880 52.381 0.00 0.00 40.31 4.35
118 119 3.119291 CTGTCTCTCATAACGGCATCAC 58.881 50.000 0.00 0.00 0.00 3.06
119 120 3.023832 TCTGTCTCTCATAACGGCATCA 58.976 45.455 0.00 0.00 0.00 3.07
120 121 3.717400 TCTGTCTCTCATAACGGCATC 57.283 47.619 0.00 0.00 0.00 3.91
121 122 3.386078 ACATCTGTCTCTCATAACGGCAT 59.614 43.478 0.00 0.00 0.00 4.40
122 123 2.760650 ACATCTGTCTCTCATAACGGCA 59.239 45.455 0.00 0.00 0.00 5.69
123 124 3.376540 GACATCTGTCTCTCATAACGGC 58.623 50.000 3.07 0.00 41.65 5.68
124 125 3.065510 ACGACATCTGTCTCTCATAACGG 59.934 47.826 8.57 0.00 42.66 4.44
125 126 4.031691 CACGACATCTGTCTCTCATAACG 58.968 47.826 8.57 0.00 42.66 3.18
126 127 4.987832 ACACGACATCTGTCTCTCATAAC 58.012 43.478 8.57 0.00 42.66 1.89
127 128 6.753107 TTACACGACATCTGTCTCTCATAA 57.247 37.500 8.57 0.00 42.66 1.90
128 129 6.150474 TGTTTACACGACATCTGTCTCTCATA 59.850 38.462 8.57 0.00 42.66 2.15
129 130 5.048013 TGTTTACACGACATCTGTCTCTCAT 60.048 40.000 8.57 0.00 42.66 2.90
130 131 4.277423 TGTTTACACGACATCTGTCTCTCA 59.723 41.667 8.57 0.00 42.66 3.27
131 132 4.795268 TGTTTACACGACATCTGTCTCTC 58.205 43.478 8.57 0.00 42.66 3.20
132 133 4.848562 TGTTTACACGACATCTGTCTCT 57.151 40.909 8.57 0.00 42.66 3.10
133 134 4.386049 CCTTGTTTACACGACATCTGTCTC 59.614 45.833 8.57 0.00 42.66 3.36
134 135 4.202223 ACCTTGTTTACACGACATCTGTCT 60.202 41.667 8.57 0.00 42.66 3.41
135 136 4.056050 ACCTTGTTTACACGACATCTGTC 58.944 43.478 0.07 0.07 41.47 3.51
136 137 4.056050 GACCTTGTTTACACGACATCTGT 58.944 43.478 0.00 0.00 0.00 3.41
137 138 4.150627 CAGACCTTGTTTACACGACATCTG 59.849 45.833 0.00 0.00 0.00 2.90
138 139 4.307432 CAGACCTTGTTTACACGACATCT 58.693 43.478 0.00 0.00 0.00 2.90
139 140 3.120649 GCAGACCTTGTTTACACGACATC 60.121 47.826 0.00 0.00 0.00 3.06
140 141 2.806244 GCAGACCTTGTTTACACGACAT 59.194 45.455 0.00 0.00 0.00 3.06
141 142 2.159014 AGCAGACCTTGTTTACACGACA 60.159 45.455 0.00 0.00 0.00 4.35
142 143 2.480845 AGCAGACCTTGTTTACACGAC 58.519 47.619 0.00 0.00 0.00 4.34
143 144 2.902705 AGCAGACCTTGTTTACACGA 57.097 45.000 0.00 0.00 0.00 4.35
144 145 3.059597 CAGAAGCAGACCTTGTTTACACG 60.060 47.826 0.00 0.00 32.78 4.49
145 146 3.877508 ACAGAAGCAGACCTTGTTTACAC 59.122 43.478 0.00 0.00 32.78 2.90
146 147 3.876914 CACAGAAGCAGACCTTGTTTACA 59.123 43.478 0.00 0.00 32.78 2.41
147 148 4.024809 GTCACAGAAGCAGACCTTGTTTAC 60.025 45.833 0.00 0.00 32.78 2.01
148 149 4.127171 GTCACAGAAGCAGACCTTGTTTA 58.873 43.478 0.00 0.00 32.78 2.01
149 150 2.945668 GTCACAGAAGCAGACCTTGTTT 59.054 45.455 0.00 0.00 32.78 2.83
150 151 2.171448 AGTCACAGAAGCAGACCTTGTT 59.829 45.455 0.00 0.00 32.78 2.83
151 152 1.765314 AGTCACAGAAGCAGACCTTGT 59.235 47.619 0.00 0.00 32.78 3.16
152 153 2.141517 CAGTCACAGAAGCAGACCTTG 58.858 52.381 0.00 0.00 32.78 3.61
153 154 1.071385 CCAGTCACAGAAGCAGACCTT 59.929 52.381 0.00 0.00 36.19 3.50
154 155 0.683973 CCAGTCACAGAAGCAGACCT 59.316 55.000 0.00 0.00 32.82 3.85
155 156 0.952984 GCCAGTCACAGAAGCAGACC 60.953 60.000 0.00 0.00 32.82 3.85
156 157 0.250038 TGCCAGTCACAGAAGCAGAC 60.250 55.000 0.00 0.00 0.00 3.51
157 158 0.689055 ATGCCAGTCACAGAAGCAGA 59.311 50.000 0.00 0.00 36.80 4.26
158 159 0.803117 CATGCCAGTCACAGAAGCAG 59.197 55.000 0.00 0.00 36.80 4.24
159 160 0.397564 TCATGCCAGTCACAGAAGCA 59.602 50.000 0.00 0.00 37.94 3.91
160 161 0.801251 GTCATGCCAGTCACAGAAGC 59.199 55.000 0.00 0.00 0.00 3.86
161 162 1.073964 CGTCATGCCAGTCACAGAAG 58.926 55.000 0.00 0.00 0.00 2.85
162 163 0.678950 TCGTCATGCCAGTCACAGAA 59.321 50.000 0.00 0.00 0.00 3.02
163 164 0.038251 GTCGTCATGCCAGTCACAGA 60.038 55.000 0.00 0.00 0.00 3.41
164 165 1.347097 CGTCGTCATGCCAGTCACAG 61.347 60.000 0.00 0.00 0.00 3.66
165 166 1.372872 CGTCGTCATGCCAGTCACA 60.373 57.895 0.00 0.00 0.00 3.58
166 167 1.080772 TCGTCGTCATGCCAGTCAC 60.081 57.895 0.00 0.00 0.00 3.67
167 168 1.080772 GTCGTCGTCATGCCAGTCA 60.081 57.895 0.00 0.00 0.00 3.41
168 169 2.152699 CGTCGTCGTCATGCCAGTC 61.153 63.158 0.00 0.00 0.00 3.51
169 170 1.934220 ATCGTCGTCGTCATGCCAGT 61.934 55.000 1.33 0.00 38.33 4.00
170 171 1.226688 ATCGTCGTCGTCATGCCAG 60.227 57.895 1.33 0.00 38.33 4.85
171 172 1.516169 CATCGTCGTCGTCATGCCA 60.516 57.895 1.33 0.00 38.33 4.92
172 173 0.595053 ATCATCGTCGTCGTCATGCC 60.595 55.000 1.33 0.00 38.33 4.40
173 174 0.500178 CATCATCGTCGTCGTCATGC 59.500 55.000 1.33 0.00 38.33 4.06
174 175 1.123655 CCATCATCGTCGTCGTCATG 58.876 55.000 1.33 0.00 38.33 3.07
175 176 0.595053 GCCATCATCGTCGTCGTCAT 60.595 55.000 1.33 0.00 38.33 3.06
176 177 1.226575 GCCATCATCGTCGTCGTCA 60.227 57.895 1.33 0.00 38.33 4.35
177 178 0.800683 TTGCCATCATCGTCGTCGTC 60.801 55.000 1.33 0.00 38.33 4.20
178 179 1.076533 GTTGCCATCATCGTCGTCGT 61.077 55.000 1.33 0.00 38.33 4.34
179 180 1.631072 GTTGCCATCATCGTCGTCG 59.369 57.895 0.00 0.00 38.55 5.12
180 181 0.800683 TCGTTGCCATCATCGTCGTC 60.801 55.000 0.00 0.00 36.90 4.20
181 182 1.076533 GTCGTTGCCATCATCGTCGT 61.077 55.000 0.00 0.00 36.90 4.34
182 183 1.075979 TGTCGTTGCCATCATCGTCG 61.076 55.000 0.00 0.00 36.90 5.12
183 184 1.075542 TTGTCGTTGCCATCATCGTC 58.924 50.000 0.00 0.00 36.90 4.20
184 185 1.398041 CATTGTCGTTGCCATCATCGT 59.602 47.619 0.00 0.00 36.90 3.73
185 186 1.665169 TCATTGTCGTTGCCATCATCG 59.335 47.619 0.00 0.00 36.90 3.84
186 187 2.419673 TGTCATTGTCGTTGCCATCATC 59.580 45.455 0.00 0.00 0.00 2.92
187 188 2.435422 TGTCATTGTCGTTGCCATCAT 58.565 42.857 0.00 0.00 0.00 2.45
188 189 1.889545 TGTCATTGTCGTTGCCATCA 58.110 45.000 0.00 0.00 0.00 3.07
189 190 4.818534 ATATGTCATTGTCGTTGCCATC 57.181 40.909 0.00 0.00 0.00 3.51
190 191 5.581126 AAATATGTCATTGTCGTTGCCAT 57.419 34.783 0.00 0.00 0.00 4.40
191 192 4.436718 CGAAATATGTCATTGTCGTTGCCA 60.437 41.667 0.00 0.00 0.00 4.92
192 193 4.028383 CGAAATATGTCATTGTCGTTGCC 58.972 43.478 0.00 0.00 0.00 4.52
193 194 4.892655 TCGAAATATGTCATTGTCGTTGC 58.107 39.130 10.46 0.00 0.00 4.17
194 195 7.691877 TGAATTCGAAATATGTCATTGTCGTTG 59.308 33.333 0.00 0.00 0.00 4.10
195 196 7.747888 TGAATTCGAAATATGTCATTGTCGTT 58.252 30.769 0.00 0.00 0.00 3.85
196 197 7.302350 TGAATTCGAAATATGTCATTGTCGT 57.698 32.000 0.00 0.00 0.00 4.34
197 198 7.852454 ACATGAATTCGAAATATGTCATTGTCG 59.148 33.333 15.33 0.00 0.00 4.35
198 199 9.507280 AACATGAATTCGAAATATGTCATTGTC 57.493 29.630 19.09 0.00 31.30 3.18
199 200 9.292846 CAACATGAATTCGAAATATGTCATTGT 57.707 29.630 19.09 12.60 31.30 2.71
200 201 9.292846 ACAACATGAATTCGAAATATGTCATTG 57.707 29.630 19.09 16.64 31.30 2.82
203 204 9.767684 GTTACAACATGAATTCGAAATATGTCA 57.232 29.630 19.09 11.42 31.30 3.58
204 205 9.988350 AGTTACAACATGAATTCGAAATATGTC 57.012 29.630 19.09 10.64 31.30 3.06
209 210 8.487176 GCAAAAGTTACAACATGAATTCGAAAT 58.513 29.630 0.00 0.00 0.00 2.17
210 211 7.305705 CGCAAAAGTTACAACATGAATTCGAAA 60.306 33.333 0.00 0.00 0.00 3.46
211 212 6.141527 CGCAAAAGTTACAACATGAATTCGAA 59.858 34.615 0.00 0.00 0.00 3.71
212 213 5.623264 CGCAAAAGTTACAACATGAATTCGA 59.377 36.000 0.00 0.00 0.00 3.71
213 214 5.623264 TCGCAAAAGTTACAACATGAATTCG 59.377 36.000 0.00 0.00 0.00 3.34
214 215 6.984740 TCGCAAAAGTTACAACATGAATTC 57.015 33.333 0.00 0.00 0.00 2.17
215 216 6.200097 GGTTCGCAAAAGTTACAACATGAATT 59.800 34.615 0.00 0.00 0.00 2.17
216 217 5.689961 GGTTCGCAAAAGTTACAACATGAAT 59.310 36.000 0.00 0.00 0.00 2.57
217 218 5.038033 GGTTCGCAAAAGTTACAACATGAA 58.962 37.500 0.00 0.00 0.00 2.57
218 219 4.336993 AGGTTCGCAAAAGTTACAACATGA 59.663 37.500 0.00 0.00 0.00 3.07
219 220 4.606961 AGGTTCGCAAAAGTTACAACATG 58.393 39.130 0.00 0.00 0.00 3.21
220 221 4.911514 AGGTTCGCAAAAGTTACAACAT 57.088 36.364 0.00 0.00 0.00 2.71
221 222 4.396790 AGAAGGTTCGCAAAAGTTACAACA 59.603 37.500 0.00 0.00 0.00 3.33
222 223 4.916870 AGAAGGTTCGCAAAAGTTACAAC 58.083 39.130 0.00 0.00 0.00 3.32
223 224 6.316890 ACTTAGAAGGTTCGCAAAAGTTACAA 59.683 34.615 0.00 0.00 0.00 2.41
224 225 5.818857 ACTTAGAAGGTTCGCAAAAGTTACA 59.181 36.000 0.00 0.00 0.00 2.41
225 226 6.018507 TGACTTAGAAGGTTCGCAAAAGTTAC 60.019 38.462 0.00 0.00 0.00 2.50
226 227 6.050432 TGACTTAGAAGGTTCGCAAAAGTTA 58.950 36.000 0.00 0.00 0.00 2.24
227 228 4.879545 TGACTTAGAAGGTTCGCAAAAGTT 59.120 37.500 0.00 0.00 0.00 2.66
228 229 4.448210 TGACTTAGAAGGTTCGCAAAAGT 58.552 39.130 0.00 0.00 0.00 2.66
229 230 5.613358 ATGACTTAGAAGGTTCGCAAAAG 57.387 39.130 0.00 0.00 0.00 2.27
230 231 5.048991 GGAATGACTTAGAAGGTTCGCAAAA 60.049 40.000 0.00 0.00 0.00 2.44
231 232 4.454504 GGAATGACTTAGAAGGTTCGCAAA 59.545 41.667 0.00 0.00 0.00 3.68
232 233 4.000988 GGAATGACTTAGAAGGTTCGCAA 58.999 43.478 0.00 0.00 0.00 4.85
233 234 3.596214 GGAATGACTTAGAAGGTTCGCA 58.404 45.455 0.00 0.00 0.00 5.10
234 235 2.937149 GGGAATGACTTAGAAGGTTCGC 59.063 50.000 0.00 1.23 0.00 4.70
235 236 4.202245 TGGGAATGACTTAGAAGGTTCG 57.798 45.455 0.00 0.00 0.00 3.95
236 237 7.775561 ACATATTGGGAATGACTTAGAAGGTTC 59.224 37.037 0.00 0.00 0.00 3.62
237 238 7.643123 ACATATTGGGAATGACTTAGAAGGTT 58.357 34.615 0.00 0.00 0.00 3.50
238 239 7.213178 ACATATTGGGAATGACTTAGAAGGT 57.787 36.000 0.00 0.00 0.00 3.50
239 240 7.995488 AGAACATATTGGGAATGACTTAGAAGG 59.005 37.037 0.00 0.00 0.00 3.46
240 241 8.970859 AGAACATATTGGGAATGACTTAGAAG 57.029 34.615 0.00 0.00 0.00 2.85
242 243 9.832445 GTTAGAACATATTGGGAATGACTTAGA 57.168 33.333 0.00 0.00 0.00 2.10
243 244 9.838339 AGTTAGAACATATTGGGAATGACTTAG 57.162 33.333 0.00 0.00 0.00 2.18
245 246 9.533831 AAAGTTAGAACATATTGGGAATGACTT 57.466 29.630 0.00 0.00 0.00 3.01
272 273 9.862371 GTCCGTATATACATCTGATTCAGAAAT 57.138 33.333 19.73 14.99 44.04 2.17
273 274 8.856103 TGTCCGTATATACATCTGATTCAGAAA 58.144 33.333 19.73 9.36 44.04 2.52
274 275 8.404107 TGTCCGTATATACATCTGATTCAGAA 57.596 34.615 19.73 4.80 44.04 3.02
275 276 7.996098 TGTCCGTATATACATCTGATTCAGA 57.004 36.000 18.29 18.29 44.99 3.27
276 277 9.476202 TTTTGTCCGTATATACATCTGATTCAG 57.524 33.333 13.22 7.38 0.00 3.02
277 278 9.825109 TTTTTGTCCGTATATACATCTGATTCA 57.175 29.630 13.22 0.00 0.00 2.57
301 302 0.605319 TCCGTCGCTGCCATCTTTTT 60.605 50.000 0.00 0.00 0.00 1.94
302 303 1.003839 TCCGTCGCTGCCATCTTTT 60.004 52.632 0.00 0.00 0.00 2.27
303 304 1.448540 CTCCGTCGCTGCCATCTTT 60.449 57.895 0.00 0.00 0.00 2.52
304 305 2.185350 CTCCGTCGCTGCCATCTT 59.815 61.111 0.00 0.00 0.00 2.40
305 306 3.842923 CCTCCGTCGCTGCCATCT 61.843 66.667 0.00 0.00 0.00 2.90
306 307 3.781770 CTCCTCCGTCGCTGCCATC 62.782 68.421 0.00 0.00 0.00 3.51
307 308 3.842923 CTCCTCCGTCGCTGCCAT 61.843 66.667 0.00 0.00 0.00 4.40
313 314 4.821589 CTTGGCCTCCTCCGTCGC 62.822 72.222 3.32 0.00 0.00 5.19
314 315 4.821589 GCTTGGCCTCCTCCGTCG 62.822 72.222 3.32 0.00 0.00 5.12
315 316 4.821589 CGCTTGGCCTCCTCCGTC 62.822 72.222 3.32 0.00 0.00 4.79
317 318 3.901797 AAACGCTTGGCCTCCTCCG 62.902 63.158 3.32 2.14 0.00 4.63
318 319 0.322187 TAAAACGCTTGGCCTCCTCC 60.322 55.000 3.32 0.00 0.00 4.30
319 320 1.087501 CTAAAACGCTTGGCCTCCTC 58.912 55.000 3.32 0.00 0.00 3.71
320 321 0.400594 ACTAAAACGCTTGGCCTCCT 59.599 50.000 3.32 0.00 0.00 3.69
321 322 0.521735 CACTAAAACGCTTGGCCTCC 59.478 55.000 3.32 0.00 0.00 4.30
322 323 1.069227 CACACTAAAACGCTTGGCCTC 60.069 52.381 3.32 0.00 0.00 4.70
323 324 0.951558 CACACTAAAACGCTTGGCCT 59.048 50.000 3.32 0.00 0.00 5.19
324 325 0.666374 ACACACTAAAACGCTTGGCC 59.334 50.000 0.00 0.00 0.00 5.36
325 326 2.485266 AACACACTAAAACGCTTGGC 57.515 45.000 0.00 0.00 0.00 4.52
326 327 3.765026 ACAAACACACTAAAACGCTTGG 58.235 40.909 0.00 0.00 0.00 3.61
327 328 4.854291 TGAACAAACACACTAAAACGCTTG 59.146 37.500 0.00 0.00 0.00 4.01
328 329 5.049398 TGAACAAACACACTAAAACGCTT 57.951 34.783 0.00 0.00 0.00 4.68
329 330 4.688511 TGAACAAACACACTAAAACGCT 57.311 36.364 0.00 0.00 0.00 5.07
330 331 5.513495 TGAATGAACAAACACACTAAAACGC 59.487 36.000 0.00 0.00 0.00 4.84
331 332 7.678194 ATGAATGAACAAACACACTAAAACG 57.322 32.000 0.00 0.00 0.00 3.60
332 333 9.900264 GAAATGAATGAACAAACACACTAAAAC 57.100 29.630 0.00 0.00 0.00 2.43
333 334 9.645059 TGAAATGAATGAACAAACACACTAAAA 57.355 25.926 0.00 0.00 0.00 1.52
334 335 9.299963 CTGAAATGAATGAACAAACACACTAAA 57.700 29.630 0.00 0.00 0.00 1.85
335 336 7.434897 GCTGAAATGAATGAACAAACACACTAA 59.565 33.333 0.00 0.00 0.00 2.24
336 337 6.917477 GCTGAAATGAATGAACAAACACACTA 59.083 34.615 0.00 0.00 0.00 2.74
337 338 5.750067 GCTGAAATGAATGAACAAACACACT 59.250 36.000 0.00 0.00 0.00 3.55
338 339 5.050837 GGCTGAAATGAATGAACAAACACAC 60.051 40.000 0.00 0.00 0.00 3.82
339 340 5.049167 GGCTGAAATGAATGAACAAACACA 58.951 37.500 0.00 0.00 0.00 3.72
340 341 4.448732 GGGCTGAAATGAATGAACAAACAC 59.551 41.667 0.00 0.00 0.00 3.32
341 342 4.630111 GGGCTGAAATGAATGAACAAACA 58.370 39.130 0.00 0.00 0.00 2.83
342 343 3.674753 CGGGCTGAAATGAATGAACAAAC 59.325 43.478 0.00 0.00 0.00 2.93
343 344 3.320541 ACGGGCTGAAATGAATGAACAAA 59.679 39.130 0.00 0.00 0.00 2.83
344 345 2.890311 ACGGGCTGAAATGAATGAACAA 59.110 40.909 0.00 0.00 0.00 2.83
345 346 2.513753 ACGGGCTGAAATGAATGAACA 58.486 42.857 0.00 0.00 0.00 3.18
346 347 4.096382 ACATACGGGCTGAAATGAATGAAC 59.904 41.667 16.57 0.00 0.00 3.18
347 348 4.269183 ACATACGGGCTGAAATGAATGAA 58.731 39.130 16.57 0.00 0.00 2.57
348 349 3.884895 ACATACGGGCTGAAATGAATGA 58.115 40.909 16.57 0.00 0.00 2.57
349 350 4.816385 ACTACATACGGGCTGAAATGAATG 59.184 41.667 16.57 9.97 0.00 2.67
350 351 5.036117 ACTACATACGGGCTGAAATGAAT 57.964 39.130 16.57 2.57 0.00 2.57
351 352 4.439057 GACTACATACGGGCTGAAATGAA 58.561 43.478 16.57 0.00 0.00 2.57
352 353 3.181469 GGACTACATACGGGCTGAAATGA 60.181 47.826 16.57 4.10 0.00 2.57
353 354 3.131396 GGACTACATACGGGCTGAAATG 58.869 50.000 0.00 6.11 0.00 2.32
354 355 2.769663 TGGACTACATACGGGCTGAAAT 59.230 45.455 0.00 0.00 0.00 2.17
355 356 2.181125 TGGACTACATACGGGCTGAAA 58.819 47.619 0.00 0.00 0.00 2.69
356 357 1.855295 TGGACTACATACGGGCTGAA 58.145 50.000 0.00 0.00 0.00 3.02
357 358 2.082140 ATGGACTACATACGGGCTGA 57.918 50.000 0.00 0.00 38.26 4.26
371 372 8.200792 AGATCTTTGTGATAGTTCAGTATGGAC 58.799 37.037 0.00 0.00 39.38 4.02
372 373 8.311395 AGATCTTTGTGATAGTTCAGTATGGA 57.689 34.615 0.00 0.00 35.14 3.41
373 374 8.954950 AAGATCTTTGTGATAGTTCAGTATGG 57.045 34.615 0.88 0.00 35.14 2.74
382 383 8.643324 GGGAGTGTATAAGATCTTTGTGATAGT 58.357 37.037 14.36 0.00 35.14 2.12
383 384 8.865090 AGGGAGTGTATAAGATCTTTGTGATAG 58.135 37.037 14.36 0.00 35.14 2.08
384 385 8.783660 AGGGAGTGTATAAGATCTTTGTGATA 57.216 34.615 14.36 2.38 35.14 2.15
385 386 7.202047 GGAGGGAGTGTATAAGATCTTTGTGAT 60.202 40.741 14.36 3.43 38.27 3.06
386 387 6.098409 GGAGGGAGTGTATAAGATCTTTGTGA 59.902 42.308 14.36 0.00 0.00 3.58
387 388 6.284459 GGAGGGAGTGTATAAGATCTTTGTG 58.716 44.000 14.36 0.00 0.00 3.33
388 389 5.069251 CGGAGGGAGTGTATAAGATCTTTGT 59.931 44.000 14.36 5.81 0.00 2.83
389 390 5.069251 ACGGAGGGAGTGTATAAGATCTTTG 59.931 44.000 14.36 0.00 0.00 2.77
390 391 5.209659 ACGGAGGGAGTGTATAAGATCTTT 58.790 41.667 14.36 4.45 0.00 2.52
391 392 4.805744 ACGGAGGGAGTGTATAAGATCTT 58.194 43.478 13.56 13.56 0.00 2.40
392 393 4.456662 ACGGAGGGAGTGTATAAGATCT 57.543 45.455 0.00 0.00 0.00 2.75
393 394 5.769162 ACTAACGGAGGGAGTGTATAAGATC 59.231 44.000 0.00 0.00 0.00 2.75
394 395 5.535406 CACTAACGGAGGGAGTGTATAAGAT 59.465 44.000 0.00 0.00 38.83 2.40
395 396 4.885907 CACTAACGGAGGGAGTGTATAAGA 59.114 45.833 0.00 0.00 38.83 2.10
396 397 4.885907 TCACTAACGGAGGGAGTGTATAAG 59.114 45.833 0.00 0.00 42.49 1.73
397 398 4.858850 TCACTAACGGAGGGAGTGTATAA 58.141 43.478 0.00 0.00 42.49 0.98
398 399 4.508551 TCACTAACGGAGGGAGTGTATA 57.491 45.455 0.00 0.00 42.49 1.47
399 400 3.377253 TCACTAACGGAGGGAGTGTAT 57.623 47.619 0.00 0.00 42.49 2.29
400 401 2.885135 TCACTAACGGAGGGAGTGTA 57.115 50.000 0.00 0.00 42.49 2.90
401 402 2.100989 GATCACTAACGGAGGGAGTGT 58.899 52.381 0.00 0.00 42.35 3.55
402 403 2.379972 AGATCACTAACGGAGGGAGTG 58.620 52.381 0.00 0.00 42.35 3.51
403 404 2.830651 AGATCACTAACGGAGGGAGT 57.169 50.000 0.00 0.00 42.35 3.85
404 405 4.497674 CGTTTAGATCACTAACGGAGGGAG 60.498 50.000 15.12 0.00 42.35 4.30
405 406 3.379372 CGTTTAGATCACTAACGGAGGGA 59.621 47.826 15.12 0.00 43.59 4.20
406 407 3.379372 TCGTTTAGATCACTAACGGAGGG 59.621 47.826 19.77 0.00 38.18 4.30
407 408 4.627611 TCGTTTAGATCACTAACGGAGG 57.372 45.455 19.77 1.36 38.18 4.30
408 409 7.521509 AAAATCGTTTAGATCACTAACGGAG 57.478 36.000 19.77 0.00 38.98 4.63
420 421 8.693504 CCGCGAAGTAATATAAAATCGTTTAGA 58.306 33.333 8.23 0.00 32.76 2.10
421 422 8.693504 TCCGCGAAGTAATATAAAATCGTTTAG 58.306 33.333 8.23 0.00 32.76 1.85
422 423 8.572828 TCCGCGAAGTAATATAAAATCGTTTA 57.427 30.769 8.23 0.00 33.76 2.01
423 424 7.306983 CCTCCGCGAAGTAATATAAAATCGTTT 60.307 37.037 8.23 0.00 33.18 3.60
424 425 6.145048 CCTCCGCGAAGTAATATAAAATCGTT 59.855 38.462 8.23 0.00 33.18 3.85
425 426 5.632347 CCTCCGCGAAGTAATATAAAATCGT 59.368 40.000 8.23 0.00 33.18 3.73
426 427 5.061808 CCCTCCGCGAAGTAATATAAAATCG 59.938 44.000 8.23 0.00 0.00 3.34
427 428 6.161381 TCCCTCCGCGAAGTAATATAAAATC 58.839 40.000 8.23 0.00 0.00 2.17
428 429 6.105397 TCCCTCCGCGAAGTAATATAAAAT 57.895 37.500 8.23 0.00 0.00 1.82
429 430 5.069516 ACTCCCTCCGCGAAGTAATATAAAA 59.930 40.000 8.23 0.00 0.00 1.52
430 431 4.586001 ACTCCCTCCGCGAAGTAATATAAA 59.414 41.667 8.23 0.00 0.00 1.40
431 432 4.147321 ACTCCCTCCGCGAAGTAATATAA 58.853 43.478 8.23 0.00 0.00 0.98
432 433 3.759581 ACTCCCTCCGCGAAGTAATATA 58.240 45.455 8.23 0.00 0.00 0.86
433 434 2.595238 ACTCCCTCCGCGAAGTAATAT 58.405 47.619 8.23 0.00 0.00 1.28
434 435 2.062971 ACTCCCTCCGCGAAGTAATA 57.937 50.000 8.23 0.00 0.00 0.98
435 436 2.062971 TACTCCCTCCGCGAAGTAAT 57.937 50.000 8.23 0.00 0.00 1.89
436 437 1.838112 TTACTCCCTCCGCGAAGTAA 58.162 50.000 8.23 10.39 33.13 2.24
437 438 2.062971 ATTACTCCCTCCGCGAAGTA 57.937 50.000 8.23 4.45 0.00 2.24
438 439 1.136500 GAATTACTCCCTCCGCGAAGT 59.864 52.381 8.23 5.49 0.00 3.01
439 440 1.136305 TGAATTACTCCCTCCGCGAAG 59.864 52.381 8.23 0.00 0.00 3.79
440 441 1.136305 CTGAATTACTCCCTCCGCGAA 59.864 52.381 8.23 0.00 0.00 4.70
441 442 0.744874 CTGAATTACTCCCTCCGCGA 59.255 55.000 8.23 0.00 0.00 5.87
442 443 0.744874 TCTGAATTACTCCCTCCGCG 59.255 55.000 0.00 0.00 0.00 6.46
443 444 2.552031 GTTCTGAATTACTCCCTCCGC 58.448 52.381 0.00 0.00 0.00 5.54
444 445 2.481449 CCGTTCTGAATTACTCCCTCCG 60.481 54.545 0.00 0.00 0.00 4.63
445 446 2.764572 TCCGTTCTGAATTACTCCCTCC 59.235 50.000 0.00 0.00 0.00 4.30
446 447 3.181474 CCTCCGTTCTGAATTACTCCCTC 60.181 52.174 0.00 0.00 0.00 4.30
447 448 2.766828 CCTCCGTTCTGAATTACTCCCT 59.233 50.000 0.00 0.00 0.00 4.20
448 449 2.764572 TCCTCCGTTCTGAATTACTCCC 59.235 50.000 0.00 0.00 0.00 4.30
449 450 4.081586 ACTTCCTCCGTTCTGAATTACTCC 60.082 45.833 0.00 0.00 0.00 3.85
450 451 5.074584 ACTTCCTCCGTTCTGAATTACTC 57.925 43.478 0.00 0.00 0.00 2.59
451 452 5.715753 ACTACTTCCTCCGTTCTGAATTACT 59.284 40.000 0.00 0.00 0.00 2.24
452 453 5.963594 ACTACTTCCTCCGTTCTGAATTAC 58.036 41.667 0.00 0.00 0.00 1.89
732 759 0.396811 AAGTAGGGGTGTGTGTGAGC 59.603 55.000 0.00 0.00 0.00 4.26
736 763 1.355112 GGGTAAGTAGGGGTGTGTGT 58.645 55.000 0.00 0.00 0.00 3.72
738 765 0.548439 GGGGGTAAGTAGGGGTGTGT 60.548 60.000 0.00 0.00 0.00 3.72
776 803 0.814457 GAGAGTGTGACGATGGAGCT 59.186 55.000 0.00 0.00 0.00 4.09
777 804 0.179124 GGAGAGTGTGACGATGGAGC 60.179 60.000 0.00 0.00 0.00 4.70
778 805 1.403679 GAGGAGAGTGTGACGATGGAG 59.596 57.143 0.00 0.00 0.00 3.86
779 806 1.271926 TGAGGAGAGTGTGACGATGGA 60.272 52.381 0.00 0.00 0.00 3.41
780 807 1.135257 GTGAGGAGAGTGTGACGATGG 60.135 57.143 0.00 0.00 0.00 3.51
818 845 0.397816 TTGGTTTTGGAGTGTGGGGG 60.398 55.000 0.00 0.00 0.00 5.40
848 875 4.038763 GGGGGAATTCGAAGTTTGAAGTTT 59.961 41.667 11.20 2.04 0.00 2.66
881 909 2.222445 AGAAATGCGCGAAACTTACGTT 59.778 40.909 12.10 0.00 34.03 3.99
927 959 5.585445 CAGAATGAGAGCAATATATCCAGGC 59.415 44.000 0.00 0.00 39.69 4.85
946 978 1.144057 GACGGCGGTGGATCAGAAT 59.856 57.895 13.24 0.00 0.00 2.40
1236 1272 1.303643 GTGGGGCAGGTTGAGGAAG 60.304 63.158 0.00 0.00 0.00 3.46
1509 1554 3.471806 GAGGAAGGGGACGAGGCC 61.472 72.222 0.00 0.00 0.00 5.19
1558 1603 2.649034 GGACTGGAAGCACGACGA 59.351 61.111 0.00 0.00 37.60 4.20
1563 1608 1.673665 CAGCTGGGACTGGAAGCAC 60.674 63.158 5.57 0.00 39.47 4.40
1662 1707 0.322975 GCTGCAGGAACTCCTTGAGA 59.677 55.000 17.12 0.00 46.09 3.27
1981 2034 5.509501 GCAAAGCTTATGCATGGGCTAATTA 60.510 40.000 22.33 0.00 43.29 1.40
2010 2063 7.265647 TCAGAGATCGAAGGTAGTAAATCAG 57.734 40.000 0.00 0.00 0.00 2.90
2041 2094 3.429135 CCTGGAAGCTAAACCTCGTAGAC 60.429 52.174 0.00 0.00 0.00 2.59
2255 2312 4.058124 TCCTTTGACAGTGAGTGATTTCG 58.942 43.478 0.00 0.00 0.00 3.46
2284 2343 4.771590 TTGCATCGATCTTCTTGCTTTT 57.228 36.364 7.83 0.00 36.10 2.27
2304 2363 5.854010 TTAGCTCCTAATGAGTCGTGATT 57.146 39.130 0.00 0.00 43.48 2.57
2310 2369 4.045783 GCGTCTTTAGCTCCTAATGAGTC 58.954 47.826 0.00 0.00 43.48 3.36
2344 2403 9.881529 GATGTAAGTTTTCACCACGTTTATTTA 57.118 29.630 0.00 0.00 0.00 1.40
2396 2455 7.804600 GTCATATTTTGCGCTGATTATGAATGA 59.195 33.333 19.75 11.27 0.00 2.57
2598 2657 1.002315 GCACACCCTTGATTGCCAATT 59.998 47.619 0.00 0.00 33.68 2.32
2689 2748 4.947388 TGATATACAAGTGAAGGGCAAACC 59.053 41.667 0.00 0.00 40.67 3.27
2700 2759 5.477510 GAGGGATGCTCTGATATACAAGTG 58.522 45.833 0.00 0.00 0.00 3.16
2867 2926 3.128349 GCTTCGTCTTGTGTTTCAGGTA 58.872 45.455 0.00 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.